| 1 | #-Q- curie #!/bin/ksh |
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| 2 | #-Q- curie ###################### |
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| 3 | #-Q- curie ## CURIE TGCC/CEA ## |
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| 4 | #-Q- curie ###################### |
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| 5 | #-Q- curie #MSUB -r ::Jobname:: # Job Name |
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| 6 | #-Q- curie #MSUB -o Script_Output_::Jobname::.000001 # standard output |
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| 7 | #-Q- curie #MSUB -e Script_Output_::Jobname::.000001 # error output |
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| 8 | #-Q- curie #MSUB -eo |
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| 9 | #-Q- curie #MSUB -n ::JobNumProcTot:: # Number of MPI tasks (SPMD case) or cores (MPMD case) |
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| 10 | #-Q- curie #MSUB -c ::openMPthreads:: # Number of openMP threads. To specify only for SMPD |
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| 11 | #-Q- curie #MSUB -x # exclusive node. To specify only for MPMD together with the one below |
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| 12 | #-Q- curie #MSUB -E '--cpu_bind=none' |
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| 13 | #-Q- curie ##MSUB -E '--distribution cyclic' |
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| 14 | #-Q- curie #MSUB -T 86400 # Wall clock limit (seconds) |
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| 15 | #-Q- curie #MSUB -q standard # thin nodes |
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| 16 | #-Q- curie ##MSUB -U high |
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| 17 | #-Q- curie #MSUB -U medium |
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| 18 | #-Q- curie ##MSUB -U low |
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| 19 | #-Q- curie #MSUB -A ::default_project:: |
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| 20 | #-Q- curie #MSUB -E --no-requeue |
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| 21 | #-Q- curie # Below specific options that can be activated |
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| 22 | #-Q- curie ##MSUB -q ivybridge # Option for Airain |
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| 23 | #-Q- curie |
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| 24 | #-Q- curie BATCH_NUM_PROC_TOT=$BRIDGE_MSUB_NPROC |
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| 25 | #-Q- curie set +x |
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| 26 | #-Q- irene #!/bin/ksh |
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| 27 | #-Q- irene ###################### |
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| 28 | #-Q- irene ## IRENE TGCC/CEA ## |
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| 29 | #-Q- irene ###################### |
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| 30 | #-Q- irene #MSUB -r ::Jobname:: # Job Name |
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| 31 | #-Q- irene #MSUB -o Script_Output_::Jobname::.000001 # standard output |
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| 32 | #-Q- irene #MSUB -e Script_Output_::Jobname::.000001 # error output |
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| 33 | #-Q- irene #MSUB -eo |
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| 34 | #-Q- irene #MSUB -n ::JobNumProcTot:: # Number of MPI tasks (SPMD case) or cores (MPMD case) |
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| 35 | #-Q- irene #MSUB -c ::openMPthreads:: # Number of openMP threads. To specify only for SMPD |
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| 36 | #-Q- irene #MSUB -x # exclusive node. To specify only for MPMD together with the one below |
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| 37 | #-Q- irene #MSUB -E '--cpu_bind=none' |
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| 38 | #-Q- irene #MSUB -T 86400 # Wall clock limit (seconds) |
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| 39 | #-Q- irene #MSUB -A ::default_project:: |
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| 40 | #-Q- irene #MSUB -q skylake |
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| 41 | #-Q- irene #MSUB -m store,work,scratch |
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| 42 | #-Q- irene |
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| 43 | #-Q- irene BATCH_NUM_PROC_TOT=$BRIDGE_MSUB_NPROC |
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| 44 | #-Q- irene set +x |
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| 45 | #-Q- jeanzay #!/bin/ksh |
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| 46 | #-Q- jeanzay ###################### |
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| 47 | #-Q- jeanzay ## JEANZAY IDRIS ## |
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| 48 | #-Q- jeanzay ###################### |
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| 49 | #-Q- jeanzay #SBATCH --job-name=::Jobname:: # Job Name |
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| 50 | #-Q- jeanzay #SBATCH --output=Script_Output_::Jobname::.000001 # standard output |
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| 51 | #-Q- jeanzay #SBATCH --error=Script_Output_::Jobname::.000001 # error output |
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| 52 | #-Q- jeanzay #SBATCH --ntasks=::JobNumProcTot:: # Number of MPI tasks |
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| 53 | #-Q- jeanzay #SBATCH --cpus-per-task=::openMPthreads:: # Number of openMP threads. |
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| 54 | #-Q- jeanzay #SBATCH --hint=nomultithread # 1 processus MPI par par physical core (no hyperthreading) |
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| 55 | #-Q- jeanzay #SBATCH --time=00:30:00 # Wall clock limit (seconds) |
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| 56 | #-Q- jeanzay #SBATCH --account ::default_project::@cpu |
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| 57 | #-Q- jeanzay |
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| 58 | #-Q- jeanzay ##BATCH_NUM_PROC_TOT=$BRIDGE_SBATCH_NPROC |
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| 59 | #-Q- jeanzay set +x |
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| 60 | #-Q- ada #!/bin/ksh |
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| 61 | #-Q- ada # ###################### |
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| 62 | #-Q- ada # ## ADA IDRIS ## |
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| 63 | #-Q- ada # ###################### |
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| 64 | #-Q- ada # Job name |
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| 65 | #-Q- ada # @ job_name = ::Jobname:: |
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| 66 | #-Q- ada # Standard output file name |
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| 67 | #-Q- ada # @ output = Script_Output_::Jobname::.000001 |
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| 68 | #-Q- ada # Error output file name |
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| 69 | #-Q- ada # @ error = Script_Output_::Jobname::.000001 |
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| 70 | #-Q- ada # Job type |
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| 71 | #-Q- ada # @ job_type = parallel |
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| 72 | #-Q- ada # Total number of tasks |
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| 73 | #-Q- ada # @ total_tasks = ::JobNumProcTot:: |
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| 74 | #-Q- ada # Specific option for OpenMP parallelization: Number of OpenMP threads per MPI task |
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| 75 | #-Q- ada # @ parallel_threads = ::openMPthreads:: |
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| 76 | #-Q- ada # Memory : as_limit=3.5gb max per process per core. With 4 threads per process use max as_limit=14gb |
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| 77 | #-Q- ada # @ as_limit = 3.5gb |
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| 78 | #-Q- ada # Maximum CPU time per task hh:mm:ss |
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| 79 | #-Q- ada # @ wall_clock_limit = 1:00:00 |
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| 80 | #-Q- ada # @ environment = "BATCH_NUM_PROC_TOT=::JobNumProcTot::" ; wall_clock_limit=$(wall_clock_limit) |
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| 81 | #-Q- ada # End of the header options |
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| 82 | #-Q- ada # @ queue |
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| 83 | #-Q- lxiv8 ###################### |
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| 84 | #-Q- lxiv8 ## OBELIX LSCE ## |
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| 85 | #-Q- lxiv8 ###################### |
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| 86 | #-Q- lxiv8 #PBS -N ::Jobname:: |
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| 87 | #-Q- lxiv8 #PBS -m a |
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| 88 | #-Q- lxiv8 #PBS -j oe |
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| 89 | #-Q- lxiv8 #PBS -q mediump |
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| 90 | #-Q- lxiv8 #PBS -o Script_Output_::Jobname::.000001 |
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| 91 | #-Q- lxiv8 #PBS -S /bin/ksh |
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| 92 | #-Q- lxiv8 #PBS -v BATCH_NUM_PROC_TOT=::JobNumProcTot:: |
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| 93 | #-Q- lxiv8 #PBS -l nodes=1:ppn=::JobNumProcTot:: |
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| 94 | #-Q- ifort_CICLAD ###################### |
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| 95 | #-Q- ifort_CICLAD ## CICLAD IPSL ## |
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| 96 | #-Q- ifort_CICLAD ###################### |
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| 97 | #-Q- ifort_CICLAD #PBS -N ::Jobname:: |
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| 98 | #-Q- ifort_CICLAD #PBS -m a |
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| 99 | #-Q- ifort_CICLAD #PBS -j oe |
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| 100 | #-Q- ifort_CICLAD ###PBS -q h12 # Queue for 12 hours at ciclad only |
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| 101 | #-Q- ifort_CICLAD #PBS -o Script_Output_::Jobname::.000001 |
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| 102 | #-Q- ifort_CICLAD #PBS -S /bin/ksh |
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| 103 | #-Q- ifort_CICLAD #PBS -v BATCH_NUM_PROC_TOT=::JobNumProcTot:: |
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| 104 | #-Q- ifort_CICLAD #PBS -l nodes=1:ppn=::JobNumProcTot:: |
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| 105 | #-Q- ifort_CICLAD #PBS -l mem=6gb |
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| 106 | #-Q- ifort_CICLAD #PBS -l vmem=30gb |
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| 107 | #-Q- default #!/bin/ksh |
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| 108 | #-Q- default ################## |
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| 109 | #-Q- default ## DEFAULT HOST ## |
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| 110 | #-Q- default ################## |
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| 111 | #-Q- default #For MPI use, uncomment next line : |
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| 112 | #-Q- default #BATCH_NUM_PROC_TOT=::JobNumProcTot:: |
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| 113 | |
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| 114 | #************************************************************** |
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| 115 | # Author: Sebastien Denvil |
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| 116 | # Contact: Sebastien.Denvil__at__ipsl.jussieu.fr |
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| 117 | # $Revision:: $ Revision of last commit |
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| 118 | # $Author:: $ Author of last commit |
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| 119 | # $Date:: $ Date of last commit |
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| 120 | # IPSL (2006) |
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| 121 | # This software is governed by the CeCILL licence see libIGCM/libIGCM_CeCILL.LIC |
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| 122 | # |
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| 123 | #************************************************************** |
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| 124 | |
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| 125 | #set -eu |
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| 126 | #set -vx |
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| 127 | |
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| 128 | date |
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| 129 | echo |
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| 130 | echo "#######################################" |
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| 131 | echo "# ANOTHER GREAT SIMULATION #" |
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| 132 | echo "#######################################" |
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| 133 | echo |
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| 134 | |
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| 135 | #D--------------------------------------------------------------------== |
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| 136 | #D- |
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| 137 | #D- Job to launch IGCM models |
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| 138 | #D- |
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| 139 | #D--------------------------------------------------------------------== |
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| 140 | #D- |
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| 141 | |
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| 142 | MODIPSL=::modipsl:: |
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| 143 | libIGCM=${MODIPSL}/libIGCM |
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| 144 | |
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| 145 | #D--------------------------------------------------------------------== |
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| 146 | #D- -1. PLACE FOR USER MODIFICATION |
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| 147 | #D- - Job Verbosity |
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| 148 | #D- - PeriodNb |
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| 149 | #D- - Experience type : DEB(ug), DEV(elopment), RUN |
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| 150 | #D--------------------------------------------------------------------== |
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| 151 | |
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| 152 | #D- Task type DO NOT CHANGE (computing, post-processing or checking) |
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| 153 | TaskType=computing |
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| 154 | |
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| 155 | #D- Increased verbosity (1, 2, 3) |
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| 156 | Verbosity=3 |
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| 157 | |
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| 158 | #D- postProcessingStopLevel (0,1,2,3) |
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| 159 | #D- 3 stop the main job if any post-processing went wrong (atlas, monitoring, metrics, create_ts, create_se, rebuild or pack_*) |
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| 160 | #D- 2 stop only if create_ts, create_se or pack_* failed (dont stop if atlas, monitoring or metrics failed) |
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| 161 | #D- 1 stop only if pack_* failed (dont stop if atlas, monitoring, metrics, create_ts or create_se failed) |
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| 162 | #D- 0 never stop the main job for post-processing that went wrong |
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| 163 | postProcessingStopLevel=1 |
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| 164 | |
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| 165 | #D- Experience type : DEB(ug), DEV(elopment), RUN (default) |
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| 166 | #D- DEB : set -vx mode + output files are NOT read only |
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| 167 | #D- DEV : output files are NOT read only |
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| 168 | #D- RUN : output files ARE read only |
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| 169 | JobType=RUN |
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| 170 | |
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| 171 | #D- Number of execution in one job |
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| 172 | PeriodNb=1 |
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| 173 | |
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| 174 | #D- |
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| 175 | #D- --------------------------------------------------------------------------------------------------# |
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| 176 | #D- ! OPTIONNAL FEATURES /!\ USE WITH CARE ! # |
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| 177 | #D- --------------------------------------------------------------------------------------------------# |
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| 178 | |
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| 179 | |
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| 180 | #D- Low level debug : to perform lib test checks, stack construction and IO functions instrumentation |
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| 181 | #D- Default=true |
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| 182 | #D- |
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| 183 | DEBUG_debug=true |
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| 184 | |
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| 185 | #D- Messaging : all activities and call stacks will be sent to ipsl servers |
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| 186 | #D- If true will imply DEBUG_debug=true |
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| 187 | #D- Default=false |
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| 188 | #D- |
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| 189 | BigBrother=true |
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| 190 | |
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| 191 | #D- Set DEBUG_sys to false to disable output calls of function |
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| 192 | #D- true when JobType=DEB # means DEB(ug) |
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| 193 | #D- |
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| 194 | #DEBUG_sys=false |
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| 195 | |
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| 196 | #D- Define running directory |
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| 197 | #D- Default=${TMPDIR} ie temporary batch directory |
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| 198 | #D- |
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| 199 | #RUN_DIR_PATH=/workdir/or/scratchdir/of/this/machine |
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| 200 | |
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| 201 | #D- Define submit directory |
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| 202 | #D- Default= where you launch qsub (variable from scheduler) |
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| 203 | #D- |
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| 204 | #SUBMIT_DIR=$( pwd ) |
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| 205 | |
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| 206 | #D- Define input file root directory R_IN |
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| 207 | #D- IPSL: /prodigfs/ipslfs/igcmg/IGCM |
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| 208 | #D- TGCC: /ccc/work/cont003/igcmg/igcmg/IGCM |
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| 209 | #D- IDRIS: /gpfswork/rech/psl/commun/IGCM |
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| 210 | #D- OBELIX: /home/orchideeshare/igcmg/IGCM |
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| 211 | #D- Other default: /home_local/${LOGIN}/IGCM |
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| 212 | |
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| 213 | #D- Change below to override the default |
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| 214 | #R_IN=/u/rech/por/rpor111/DATA |
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| 215 | |
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| 216 | #D- Turn in dry run mode ? (0,1,2,3) |
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| 217 | #D- Default=0 |
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| 218 | #D- |
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| 219 | #DRYRUN=3 |
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| 220 | #D-# YOU HAVE TO COMPILE YOUR EXE FILES to USE DRYRUN MODE ! |
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| 221 | #D-# ------------------------------------------------------------------------------------- |
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| 222 | #D-# | DRYRUN= | Date computations, | sys_Get | Exe | sys_Put_Out; sys_Put_Rest | |
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| 223 | #D-# | | Cp/Exe/param/files | | | | |
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| 224 | #D-# | | Chmod Qsub | | | | |
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| 225 | #D-# ------------------------------------------------------------------------------------- |
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| 226 | #D-# | 0 | yes | yes | yes | yes | |
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| 227 | #D-# ------------------------------------------------------------------------------------- |
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| 228 | #D-# | 1 | yes | yes | yes | no | |
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| 229 | #D-# ------------------------------------------------------------------------------------- |
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| 230 | #D-# | 2 | yes | yes | no | no | |
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| 231 | #D-# ------------------------------------------------------------------------------------- |
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| 232 | #D-# | 3 | yes | no | no | no | |
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| 233 | #D-# ------------------------------------------------------------------------------------- |
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| 234 | |
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| 235 | #D- |
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| 236 | # --------------------------------------------------------------------------------------------------# |
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| 237 | #D- ! END OF OPTIONNAL FEATURES /!\ DO NOT MODIFY ANYTHING BELOW UNLESS YOU KNOW WHAT YOU ARE DOING # |
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| 238 | # --------------------------------------------------------------------------------------------------# |
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| 239 | |
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| 240 | #D- |
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| 241 | #D--------------------------------------------------------------------== |
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| 242 | #D- 0.0 SYSTEM ENVIRONMENT |
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| 243 | #D- - Define variables for Number of processors |
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| 244 | #D- - Define MPI variables |
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| 245 | #D- - Define batch scheduler variables |
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| 246 | #D- - Source IGCM Library |
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| 247 | #D- - Get RESOLution in .resol file (temporary) |
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| 248 | #D--------------------------------------------------------------------== |
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| 249 | |
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| 250 | #---------------------------------------------------------------------== |
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| 251 | |
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| 252 | . ${libIGCM}/libIGCM_debug/libIGCM_debug.ksh |
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| 253 | . ${libIGCM}/libIGCM_card/libIGCM_card.ksh |
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| 254 | . ${libIGCM}/libIGCM_date/libIGCM_date.ksh |
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| 255 | #------- |
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| 256 | . ${libIGCM}/libIGCM_sys/libIGCM_sys.ksh |
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| 257 | . ${libIGCM}/libIGCM_config/libIGCM_config.ksh |
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| 258 | . ${libIGCM}/libIGCM_comp/libIGCM_comp.ksh |
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| 259 | . ${libIGCM}/libIGCM_post/libIGCM_post.ksh |
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| 260 | #------- |
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| 261 | ( ${DEBUG_debug} ) && IGCM_debug_Check |
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| 262 | ( ${DEBUG_debug} ) && IGCM_card_Check |
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| 263 | ( ${DEBUG_debug} ) && IGCM_date_Check |
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| 264 | |
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| 265 | #--------------------------------------------------------------------== |
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| 266 | |
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| 267 | #-- Resolution FLAG for oasis input |
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| 268 | #RESOL="ORCA2xLMD9671" |
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| 269 | [ -f ${SUBMIT_DIR}/../.resol ] && RESOL=$(head -1 ${SUBMIT_DIR}/../.resol) |
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| 270 | #-- Chemistrie FLAG to ease chemistries configurations management |
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| 271 | #CHEM="AER" |
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| 272 | [ -f ${SUBMIT_DIR}/../.chimie ] && eval $(grep CHEM ${SUBMIT_DIR}/../.chimie) |
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| 273 | |
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| 274 | #D- |
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| 275 | #D--------------------------------------------------------------------== |
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| 276 | #D- 0.1 COMMON ENVIRONMENT |
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| 277 | #D- - Read libIGCM compatibility version in config.card |
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| 278 | #D- - Read UserChoices section |
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| 279 | #D- - Read Ensemble section |
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| 280 | #D- - Read Post section |
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| 281 | #D- - Define all netcdf output directories |
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| 282 | #D--------------------------------------------------------------------== |
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| 283 | IGCM_config_CommonConfiguration ${SUBMIT_DIR}/config.card |
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| 284 | |
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| 285 | if [ ! -r ${SUBMIT_DIR}/run.card ] ; then |
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| 286 | #================================================# |
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| 287 | # The file run.card doesn't exist # |
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| 288 | #================================================# |
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| 289 | FirstInitialize=true |
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| 290 | #copy initial run.card |
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| 291 | IGCM_sys_Cp ${SUBMIT_DIR}/run.card.init ${SUBMIT_DIR}/run.card |
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| 292 | IGCM_debug_Print 2 "run.card copied from run.card.init" |
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| 293 | else |
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| 294 | FirstInitialize=false |
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| 295 | IGCM_debug_Print 2 "run.card exists" |
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| 296 | fi |
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| 297 | |
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| 298 | # ------------------------------------------------------------------ |
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| 299 | # Activate BigBrother so as to supervise this simulation |
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| 300 | # ------------------------------------------------------------------ |
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| 301 | IGCM_debug_BigBro_Initialize |
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| 302 | |
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| 303 | #D- |
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| 304 | #D--------------------------------------------------------------------== |
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| 305 | #D- 1. INITIALIZE CONFIGURATION |
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| 306 | #D- - Simulation configuration |
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| 307 | #D- - Simulation parameters |
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| 308 | #D- - Execution parameter |
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| 309 | #D- - Define input files directory |
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| 310 | #D- - Read or initialize CumulPeriod |
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| 311 | #D- - run.card |
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| 312 | #D--------------------------------------------------------------------== |
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| 313 | IGCM_config_Initialize |
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| 314 | |
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| 315 | # --------------------------------------------------------------------== |
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| 316 | # Define, create and cd RUN_DIR |
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| 317 | # --------------------------------------------------------------------== |
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| 318 | RUN_DIR=${RUN_DIR_PATH}/${config_UserChoices_JobName}.${$} |
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| 319 | IGCM_sys_MkdirWork ${RUN_DIR} |
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| 320 | IGCM_sys_Cd ${RUN_DIR} |
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| 321 | |
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| 322 | # ------------------------------------------------------------------ |
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| 323 | # Test if all was right before proceeding further |
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| 324 | # ------------------------------------------------------------------ |
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| 325 | IGCM_debug_Verif_Exit |
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| 326 | |
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| 327 | #D- |
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| 328 | #D---------------------------------------------------------------------== |
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| 329 | #D- 2. INITIALIZE ALL COMPONENT OF THE CONFIGURATION |
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| 330 | #D- - Define component executable |
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| 331 | #D- - Define Write Frequency by component "1M" "1D" ... |
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| 332 | #D- - Source ${comp}.driver |
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| 333 | #D- - Define Storage Places by component |
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| 334 | #D- - ${comp}_Initialize : |
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| 335 | #D- - Patterns to sed |
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| 336 | #D- - Variables from namelist |
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| 337 | #D---------------------------------------------------------------------== |
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| 338 | IGCM_comp_Initialize |
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| 339 | |
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| 340 | #D- |
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| 341 | #D---------------------------------------------------------------------== |
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| 342 | #D- 3. PERFORM GENERAL VERIFICATION |
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| 343 | #D- - Verify compatibility of period length, write frequencies, ... |
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| 344 | #D- - Verify compatibility of rebuild choices and post-process choices |
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| 345 | #D- - Will stop here if something is wrong |
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| 346 | #D---------------------------------------------------------------------== |
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| 347 | IGCM_config_Check |
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| 348 | |
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| 349 | # ------------------------------------------------------------------ |
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| 350 | # Test if all was right before entering the period loop |
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| 351 | # ------------------------------------------------------------------ |
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| 352 | IGCM_debug_Verif_Exit |
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| 353 | |
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| 354 | #D- |
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| 355 | #D---------------------------------------------------------------------== |
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| 356 | #D- 4. ENTER THE DEEP EXECUTION LOOP |
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| 357 | #D- ! FASTEN YOUR SEAT BELTS PLEASE. ! |
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| 358 | #D- ! WE WILL CROSS TURBULENCES. ! |
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| 359 | #D---------------------------------------------------------------------== |
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| 360 | |
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| 361 | Period=1 |
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| 362 | |
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| 363 | PeriodContinue=false |
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| 364 | if [ ${Period} -le ${PeriodNb} ]; then |
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| 365 | PeriodContinue=true |
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| 366 | fi |
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| 367 | while ( ${PeriodContinue} ) ; do |
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| 368 | |
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| 369 | echo |
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| 370 | echo "Starting iteration ${Period} / ${PeriodNb}" |
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| 371 | |
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| 372 | #D- |
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| 373 | # ------------------------------------------------------------------ |
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| 374 | #D- 4.1 COMPUTE AND DEFINE DATE INFORMATION. |
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| 375 | #D- - ${PeriodDateBegin} |
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| 376 | #D- - ${PeriodDateEnd} |
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| 377 | #D- - ${CumulPeriod} |
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| 378 | #D- - ${DatesPeriod}=${PeriodDateBegin}_${PeriodDateEnd} |
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| 379 | #D- - ${PeriodLength} => JOURS=31 , 28, 29, 30 ; MOIS=0 ; ANS=0 |
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| 380 | #D- - update run.card value |
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| 381 | # ------------------------------------------------------------------ |
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| 382 | IGCM_config_PeriodStart |
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| 383 | |
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| 384 | #D- |
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| 385 | # ------------------------------------------------------------------ |
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| 386 | #D- 4.2 BEGIN COMPUTATION ONLY IF NEEDED |
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| 387 | # ------------------------------------------------------------------ |
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| 388 | if [ ${SimulationLengthInDays} -gt ${ExperienceLengthInDays} ] ; then |
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| 389 | IGCM_debug_Print 1 "break because '\${SimulationLengthInDays} -gt \${ExperienceLengthInDays}' : ${SimulationLengthInDays} -gt ${ExperienceLengthInDays}" |
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| 390 | break ; |
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| 391 | fi |
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| 392 | |
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| 393 | #D- |
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| 394 | # ------------------------------------------------------------------ |
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| 395 | #D- 4.3 CALL OPTIONNAL FUNCTION WITHIN DRIVER |
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| 396 | #D- - to set special variables used in lists (Param, Init or Bc). |
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| 397 | # ------------------------------------------------------------------ |
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| 398 | IGCM_comp_PeriodStart |
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| 399 | |
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| 400 | #D- |
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| 401 | # ------------------------------------------------------------------ |
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| 402 | #D- 4.4 GET PARAMETERS TEXT FILES UPDATED BY JOB |
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| 403 | #D- - (.def, namelist ...) |
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| 404 | #D- - READ AND USE BY GCM AT EACH EXECUTION. |
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| 405 | # ------------------------------------------------------------------ |
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| 406 | IGCM_comp_GetInputParametersFiles |
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| 407 | |
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| 408 | #D- |
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| 409 | # ------------------------------------------------------------------ |
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| 410 | #D- 4.5 GET INITIAL STATE |
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| 411 | #D- - (Etat0, carteveg,relief...) |
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| 412 | #D- - NECESSARY ONLY IF CumulPeriod= (=> NUMERO) == 1 |
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| 413 | #D- - AND ???_Restart=NO |
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| 414 | #D- - READ AND USE BY GCM FOR ONLY ONE EXECUTION. |
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| 415 | # ------------------------------------------------------------------ |
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| 416 | IGCM_comp_GetInputInitialStateFiles |
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| 417 | |
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| 418 | #D- |
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| 419 | # ------------------------------------------------------------------ |
|---|
| 420 | #D- 4.6 GET BOUNDARIES CONDITIONS |
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| 421 | #D- - (SST, WIND[X,Y,Z], LAI ...) |
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| 422 | #D- - READ AND USE BY GCM AT EACH EXECUTION. |
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| 423 | # ------------------------------------------------------------------ |
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| 424 | IGCM_comp_GetInputBoundaryFiles |
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| 425 | |
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| 426 | #D- |
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| 427 | # ------------------------------------------------------------------ |
|---|
| 428 | #D- 4.7 GET SmoothFiles CONDITIONS |
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| 429 | #D- - (SST, WIND[X,Y,Z], LAI ...) |
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| 430 | #D- - READ AND USE BY GCM AT EACH EXECUTION |
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| 431 | #D- - Do not change at each ${Period} |
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| 432 | # ------------------------------------------------------------------ |
|---|
| 433 | IGCM_comp_GetInputSmoothFiles |
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| 434 | |
|---|
| 435 | #D- |
|---|
| 436 | # ------------------------------------------------------------------ |
|---|
| 437 | #D- 4.8 GET RESTART FILES |
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| 438 | #D- - (restartphy.nc, orca_restart.nc ...) |
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| 439 | #D- - READ AND USE BY GCM AT EACH EXECUTION. |
|---|
| 440 | #D- |
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| 441 | #D- - IF A COMPONENT DO NOT RESTART FROM PREVIOULSY COMPUTED RESTART |
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| 442 | #D- - ONLY IF CumulPeriod= (=> NUMERO) == 1 |
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| 443 | #D- - MUST EXECUTE CREATE ETAT0_LIMIT (TYPICALLY LMDZ AND ./create_etat0_limit.e) |
|---|
| 444 | #D- |
|---|
| 445 | #D- - IF CumulPeriod == 1 |
|---|
| 446 | #D- - AND A COMPONENT RESTART FROM PREVIOULSY COMPUTED RESTART |
|---|
| 447 | #D- - MUST BRING THIS RESTART IN ${RUN_DIR_PATH} |
|---|
| 448 | #D- |
|---|
| 449 | #D- - ELSE BRING RESTART FROM ${JobName} IN ${RUN_DIR_PATH} |
|---|
| 450 | # ------------------------------------------------------------------ |
|---|
| 451 | IGCM_comp_GetInputRestartFiles |
|---|
| 452 | |
|---|
| 453 | # ------------------------------------------------------------------ |
|---|
| 454 | #D- 4.9 GET BINARY FILES |
|---|
| 455 | #D- - USED BY AT EACH EXECUTION. |
|---|
| 456 | #D- - CHECK BINARIES HAS BEEN COMPILED WITH THE SAME COMPILER |
|---|
| 457 | #D- - RELOAD THE APPROPRIATE ENVIRONMENT THE FIRST TIME IF NEEDED |
|---|
| 458 | # ------------------------------------------------------------------ |
|---|
| 459 | IGCM_comp_GetInputBinaryFiles |
|---|
| 460 | |
|---|
| 461 | # ------------------------------------------------------------------ |
|---|
| 462 | # Test if all was right before Update |
|---|
| 463 | # ------------------------------------------------------------------ |
|---|
| 464 | IGCM_debug_Verif_Exit |
|---|
| 465 | |
|---|
| 466 | #D- |
|---|
| 467 | # ------------------------------------------------------------------ |
|---|
| 468 | #D- 4.10 ACTIVATE RUNNING ENVIRONNEMENT VARIABLES |
|---|
| 469 | #D- - including module load associated to compiler & tools |
|---|
| 470 | #D- - .env_intel17.0.2_curie |
|---|
| 471 | #D- - .env_netcdf4.3.3.1_curie |
|---|
| 472 | # ------------------------------------------------------------------ |
|---|
| 473 | IGCM_sys_activ_variables |
|---|
| 474 | |
|---|
| 475 | #D- |
|---|
| 476 | # ------------------------------------------------------------------ |
|---|
| 477 | #D- 4.11 UPDATE ParametersFiles |
|---|
| 478 | #D- - (.def, namelist ...) |
|---|
| 479 | #D- - with current value of (ORCA_NIT00, ORCA_LRSTAR, RAZ_DATE, ...) |
|---|
| 480 | # ------------------------------------------------------------------ |
|---|
| 481 | IGCM_comp_Update |
|---|
| 482 | |
|---|
| 483 | # ------------------------------------------------------------------ |
|---|
| 484 | # Test if all was right before execution |
|---|
| 485 | # ------------------------------------------------------------------ |
|---|
| 486 | IGCM_debug_Verif_Exit |
|---|
| 487 | |
|---|
| 488 | #-Q- jeanzay # Workaround at Jean-Zay |
|---|
| 489 | #-Q- jeanzay source $I_MPI_ROOT/intel64/bin/mpivars.sh release_mt |
|---|
| 490 | |
|---|
| 491 | #D- |
|---|
| 492 | #D---------------------------------------------------------------------== |
|---|
| 493 | #D- 5. EXECUTION |
|---|
| 494 | #D---------------------------------------------------------------------== |
|---|
| 495 | |
|---|
| 496 | echo |
|---|
| 497 | echo "#######################################" |
|---|
| 498 | echo "# DIR BEFORE RUN EXECUTION #" |
|---|
| 499 | echo "#######################################" |
|---|
| 500 | echo |
|---|
| 501 | ls -lrt |
|---|
| 502 | |
|---|
| 503 | echo "========================================================================" |
|---|
| 504 | if [ ${DRYRUN} -le 1 ] ; then |
|---|
| 505 | REAL_DATE_INIT=$( date ) |
|---|
| 506 | echo > ${Exe_Output} |
|---|
| 507 | echo "#######################################" >> ${Exe_Output} |
|---|
| 508 | echo "EXECUTION of : ${EXECUTION}" |
|---|
| 509 | echo "EXECUTION of : ${EXECUTION}" >> ${Exe_Output} |
|---|
| 510 | echo >> ${Exe_Output} |
|---|
| 511 | typeset RET |
|---|
| 512 | RUN_DATE_BEGIN=$( date '+%Y-%m-%dT%H:%M:%S' ) |
|---|
| 513 | ${EXECUTION} >> ${Exe_Output} 2>&1 |
|---|
| 514 | RET=$? |
|---|
| 515 | RUN_DATE_END=$( date '+%Y-%m-%dT%H:%M:%S' ) |
|---|
| 516 | if [ ${RET} -gt 0 ] ; then |
|---|
| 517 | echo "Return code of executable :" ${RET} |
|---|
| 518 | IGCM_debug_Exit "EXECUTABLE" |
|---|
| 519 | IGCM_sys_Mkdir ${SUBMIT_DIR}/Debug |
|---|
| 520 | IGCM_sys_Cp ${Exe_Output} ${SUBMIT_DIR}/Debug/${PREFIX}_${Exe_Output}_error |
|---|
| 521 | ExecutionFail=true |
|---|
| 522 | fi |
|---|
| 523 | echo >> ${Exe_Output} |
|---|
| 524 | echo "#######################################" >> ${Exe_Output} |
|---|
| 525 | echo "libIGCM RunDateBegin=${RUN_DATE_BEGIN}" >> ${Exe_Output} |
|---|
| 526 | echo "libIGCM RunDateEnd=${RUN_DATE_END}" >> ${Exe_Output} |
|---|
| 527 | echo >> ${Exe_Output} |
|---|
| 528 | else |
|---|
| 529 | echo "EXECUTION of : ${EXECUTION} simulated for DRYRUN = " $DRYRUN |
|---|
| 530 | echo "EXECUTION of : ${EXECUTION} simulated for DRYRUN = " $DRYRUN > ${Exe_Output} |
|---|
| 531 | if ( $DEBUG_debug ) ; then |
|---|
| 532 | echo "FOR EXECUTION DRYRUN mode = " $DRYRUN >> stack |
|---|
| 533 | fi |
|---|
| 534 | fi |
|---|
| 535 | echo "========================================================================" |
|---|
| 536 | |
|---|
| 537 | echo |
|---|
| 538 | echo "#######################################" |
|---|
| 539 | echo "# DIR AFTER RUN EXECUTION #" |
|---|
| 540 | echo "#######################################" |
|---|
| 541 | echo |
|---|
| 542 | ls -lrt |
|---|
| 543 | |
|---|
| 544 | #D- |
|---|
| 545 | #D---------------------------------------------------------------------== |
|---|
| 546 | #D- 6. POST EXECUTION OPERATIONS |
|---|
| 547 | #D---------------------------------------------------------------------== |
|---|
| 548 | |
|---|
| 549 | #D- |
|---|
| 550 | # ------------------------------------------------------------------ |
|---|
| 551 | #D- 6.1. DESACTIVATE RUNNING ENVIRONNEMENT VARIABLES |
|---|
| 552 | # ------------------------------------------------------------------ |
|---|
| 553 | IGCM_sys_desactiv_variables |
|---|
| 554 | |
|---|
| 555 | #D- |
|---|
| 556 | # ------------------------------------------------------------------ |
|---|
| 557 | #D- 6.2. SAVE OUTPUTS |
|---|
| 558 | #D- - On archive/storage machine |
|---|
| 559 | #D- - netcdf outputs, restarts and text files of models |
|---|
| 560 | # ------------------------------------------------------------------ |
|---|
| 561 | IGCM_comp_Finalize |
|---|
| 562 | |
|---|
| 563 | # ------------------------------------------------------------------ |
|---|
| 564 | # Test if all was right after Finalize |
|---|
| 565 | # ------------------------------------------------------------------ |
|---|
| 566 | IGCM_debug_Verif_Exit |
|---|
| 567 | |
|---|
| 568 | #D- |
|---|
| 569 | # ------------------------------------------------------------------ |
|---|
| 570 | #D- 6.3. CONFIGURE POST-PROCESSING |
|---|
| 571 | #D- - asynchronous post-treatment (Level 0) when necessary (rebuild/pack) |
|---|
| 572 | #D- - classic post-treatment (Level 1) when necessary (TimeSeries/Seasonal) |
|---|
| 573 | # ------------------------------------------------------------------ |
|---|
| 574 | IGCM_post_Configure |
|---|
| 575 | |
|---|
| 576 | #D- |
|---|
| 577 | # ------------------------------------------------------------------ |
|---|
| 578 | #D- 6.4. SUBMIT POST-PROCESSING |
|---|
| 579 | #D- - remote rebuild or/and post-treatment process if necessary |
|---|
| 580 | # ------------------------------------------------------------------ |
|---|
| 581 | IGCM_post_Submit |
|---|
| 582 | |
|---|
| 583 | #D- |
|---|
| 584 | # ------------------------------------------------------------------ |
|---|
| 585 | #D- 6.5. FINALYZE CURRENT LOOP AND PREPARE NEXT ONE |
|---|
| 586 | #D- - Manage executable size to save only different binary |
|---|
| 587 | #D- - Write in run.card user, system and elapse time |
|---|
| 588 | #D- - Check that everything went well ! No ? then we stop. |
|---|
| 589 | #D- - Determine next computed period |
|---|
| 590 | # ------------------------------------------------------------------ |
|---|
| 591 | IGCM_config_PeriodEnd |
|---|
| 592 | |
|---|
| 593 | echo "Ending iteration ${Period}" |
|---|
| 594 | (( Period = Period + 1 )) |
|---|
| 595 | |
|---|
| 596 | # End loop if date end is reached |
|---|
| 597 | if [ ${SimulationLengthInDays} -ge ${ExperienceLengthInDays} ] ; then |
|---|
| 598 | break ; |
|---|
| 599 | fi |
|---|
| 600 | |
|---|
| 601 | PeriodContinue=false |
|---|
| 602 | if [ ${Period} -le ${PeriodNb} ]; then |
|---|
| 603 | PeriodContinue=true |
|---|
| 604 | fi |
|---|
| 605 | done |
|---|
| 606 | |
|---|
| 607 | #D- |
|---|
| 608 | #D---------------------------------------------------------------------== |
|---|
| 609 | #D- 7. SUBMIT NEXT JOB OR SEND MAIL IF SIMULATION IS OVER. |
|---|
| 610 | #D---------------------------------------------------------------------== |
|---|
| 611 | IGCM_config_Finalize |
|---|
| 612 | |
|---|
| 613 | date |
|---|
