source: trunk/libIGCM/AA_job_debug @ 1572

#-Q- curie #!/bin/ksh
#-Q- curie ######################
#-Q- curie ## CURIE   TGCC/CEA ##
#-Q- curie ######################
#-Q- curie #MSUB -r ::Jobname::        # Job Name
#-Q- curie #MSUB -o Script_Output_::Jobname::.000001    # standard output
#-Q- curie #MSUB -e Script_Output_::Jobname::.000001    # error output
#-Q- curie #MSUB -eo
#-Q- curie #MSUB -n ::JobNumProcTot::  # Number of MPI tasks (SPMD case) or cores (MPMD case)
#-Q- curie #MSUB -c ::openMPthreads::  # Number of openMP threads. To specify only for SMPD
#-Q- curie #MSUB -x                    # exclusive node. To specify only for MPMD together with the one below
#-Q- curie #MSUB -E '--cpu_bind=none'
#-Q- curie ##MSUB -E '--distribution cyclic' 
#-Q- curie #MSUB -T 86400              # Wall clock limit (seconds)
#-Q- curie #MSUB -q standard           # thin nodes
#-Q- curie ##MSUB -U high
#-Q- curie #MSUB -U medium
#-Q- curie ##MSUB -U low
#-Q- curie #MSUB -A ::default_project::
#-Q- curie #MSUB -E --no-requeue
#-Q- curie # Below specific options that can be activated 
#-Q- curie ##MSUB -q ivybridge         # Option for Airain
#-Q- curie
#-Q- curie BATCH_NUM_PROC_TOT=$BRIDGE_MSUB_NPROC
#-Q- curie set +x
#-Q- irene #!/bin/ksh
#-Q- irene ######################
#-Q- irene ## IRENE   TGCC/CEA ##
#-Q- irene ######################
#-Q- irene #MSUB -r ::Jobname::        # Job Name
#-Q- irene #MSUB -o Script_Output_::Jobname::.000001    # standard output
#-Q- irene #MSUB -e Script_Output_::Jobname::.000001    # error output
#-Q- irene #MSUB -eo
#-Q- irene #MSUB -n ::JobNumProcTot::  # Number of MPI tasks (SPMD case) or cores (MPMD case)
#-Q- irene #MSUB -c ::openMPthreads::  # Number of openMP threads. To specify only for SMPD
#-Q- irene #MSUB -x                    # exclusive node. To specify only for MPMD together with the one below
#-Q- irene #MSUB -E '--cpu_bind=none'
#-Q- irene #MSUB -T ::WallTime::              # Wall clock limit (seconds)
#-Q- irene #MSUB -A ::default_project::
#-Q- irene #MSUB -q skylake
#-Q- irene #MSUB -m store,work,scratch
#-Q- irene
#-Q- irene BATCH_NUM_PROC_TOT=$BRIDGE_MSUB_NPROC
#-Q- irene set +x
#-Q- irene-amd #!/bin/ksh
#-Q- irene-amd ######################
#-Q- irene-amd ## IRENE-AMD   TGCC/CEA ##
#-Q- irene-amd ######################
#-Q- irene-amd #MSUB -r ::Jobname::        # Job Name
#-Q- irene-amd #MSUB -o Script_Output_::Jobname::.000001    # standard output
#-Q- irene-amd #MSUB -e Script_Output_::Jobname::.000001    # error output
#-Q- irene-amd #MSUB -eo
#-Q- irene-amd #MSUB -n ::JobNumProcTot::  # Number of MPI tasks (SPMD case) or cores (MPMD case)
#-Q- irene-amd #MSUB -c ::openMPthreads::  # Number of openMP threads. To specify only for SMPD
#-Q- irene-amd #MSUB -x                    # exclusive node. To specify only for MPMD together with the one below
#-Q- irene-amd #MSUB -T ::WallTime::              # Wall clock limit (seconds)
#-Q- irene-amd #MSUB -A ::default_project::
#-Q- irene-amd #MSUB -q rome
#-Q- irene-amd #MSUB -m store,work,scratch
#-Q- irene-amd
#-Q- irene-amd BATCH_NUM_PROC_TOT=$BRIDGE_MSUB_NPROC
#-Q- irene-amd set +x
#-Q- jeanzay #!/bin/ksh
#-Q- jeanzay ######################
#-Q- jeanzay ## JEANZAY    IDRIS ##
#-Q- jeanzay ######################
#-Q- jeanzay #SBATCH --job-name=::Jobname::        # Job Name
#-Q- jeanzay #SBATCH --output=Script_Output_::Jobname::.000001    # standard output
#-Q- jeanzay #SBATCH --error=Script_Output_::Jobname::.000001    # error output
#-Q- jeanzay #SBATCH --ntasks=::JobNumProcTot::   # Number of MPI tasks
#-Q- jeanzay #SBATCH --cpus-per-task=::openMPthreads::  # Number of openMP threads.
#-Q- jeanzay #SBATCH --hint=nomultithread         # 1 processus MPI par par physical core (no hyperthreading) 
#-Q- jeanzay #SBATCH --time=::WallTime::             # Wall clock limit (minutes)
#-Q- jeanzay #SBATCH --account ::default_project::@cpu
#-Q- jeanzay
#-Q- jeanzay ##BATCH_NUM_PROC_TOT=$BRIDGE_SBATCH_NPROC
#-Q- jeanzay set +x
#-Q- ada #!/bin/ksh
#-Q- ada # ######################
#-Q- ada # ##  ADA       IDRIS ##
#-Q- ada # ######################
#-Q- ada # Job name 
#-Q- ada # @ job_name = ::Jobname::
#-Q- ada # Standard output file name
#-Q- ada # @ output = Script_Output_::Jobname::.000001
#-Q- ada # Error output file name
#-Q- ada # @ error = Script_Output_::Jobname::.000001
#-Q- ada # Job type
#-Q- ada # @ job_type = parallel
#-Q- ada # Total number of tasks
#-Q- ada # @ total_tasks = ::JobNumProcTot::
#-Q- ada # Specific option for OpenMP parallelization: Number of OpenMP threads per MPI task
#-Q- ada # @ parallel_threads = ::openMPthreads::
#-Q- ada # Memory : as_limit=3.5gb max per process per core. With 4 threads per process use max as_limit=14gb
#-Q- ada # @ as_limit = 3.5gb
#-Q- ada # Maximum CPU time per task hh:mm:ss
#-Q- ada # @ wall_clock_limit = 1:00:00
#-Q- ada # @ environment = "BATCH_NUM_PROC_TOT=::JobNumProcTot::" ; wall_clock_limit=$(wall_clock_limit)
#-Q- ada # End of the header options
#-Q- ada # @ queue
#-Q- obelix ######################
#-Q- obelix ## OBELIX      LSCE ##
#-Q- obelix ######################
#-Q- obelix #PBS -N ::Jobname::
#-Q- obelix #PBS -m a
#-Q- obelix #PBS -j oe
#-Q- obelix #PBS -q mediump
#-Q- obelix #PBS -o Script_Output_::Jobname::.000001
#-Q- obelix #PBS -S /bin/ksh
#-Q- obelix #PBS -v BATCH_NUM_PROC_TOT=::JobNumProcTot::
#-Q- obelix #PBS -l nodes=1:ppn=::JobNumProcTot::
#-Q- mesoipsl #!/bin/ksh
#-Q- mesoipsl ######################
#-Q- mesoipsl ## MESO ESPRI IPSL  ##
#-Q- mesoipsl ######################
#-Q- mesoipsl #SBATCH --job-name=::Jobname::        # Job Name
#-Q- mesoipsl #SBATCH --output=Script_Output_::Jobname::.000001    # standard output
#-Q- mesoipsl #SBATCH --error=Script_Output_::Jobname::.000001    # error output
#-Q- mesoipsl #SBATCH --ntasks=::JobNumProcTot::   # Number of MPI tasks
#-Q- mesoipsl #SBATCH --cpus-per-task=::openMPthreads::  # Number of openMP threads.
#-Q- mesoipsl #SBATCH --hint=nomultithread         # 1 processus MPI par par physical core (no hyperthreading) 
#-Q- mesoipsl #SBATCH --time=30                    # Wall clock limit (minutes)
#-Q- mesoipsl set +x
#-Q- ifort_CICLAD ######################
#-Q- ifort_CICLAD ##   CICLAD    IPSL ##
#-Q- ifort_CICLAD ######################
#-Q- ifort_CICLAD #PBS -N ::Jobname::
#-Q- ifort_CICLAD #PBS -m a
#-Q- ifort_CICLAD #PBS -j oe
#-Q- ifort_CICLAD ###PBS -q h12   # Queue for 12 hours at ciclad only
#-Q- ifort_CICLAD #PBS -o Script_Output_::Jobname::.000001
#-Q- ifort_CICLAD #PBS -S /bin/ksh
#-Q- ifort_CICLAD #PBS -v BATCH_NUM_PROC_TOT=::JobNumProcTot::
#-Q- ifort_CICLAD #PBS -l nodes=1:ppn=::JobNumProcTot::
#-Q- ifort_CICLAD #PBS -l mem=6gb
#-Q- ifort_CICLAD #PBS -l vmem=30gb
#-Q- default #!/bin/ksh
#-Q- default ##################
#-Q- default ## DEFAULT HOST ##
#-Q- default ##################
#-Q- default #For MPI use, uncomment next line :
#-Q- default #BATCH_NUM_PROC_TOT=::JobNumProcTot::

#**************************************************************
# Author: Sebastien Denvil
# Contact: Sebastien.Denvil__at__ipsl.jussieu.fr
# $Revision:: 1536                                     $ Revision of last commit
# $Author:: rpennel                                    $ Author of last commit
# $Date:: 2020-07-03 15:16:53 +0200 (Fri, 03 Jul 2020) $ Date of last commit
# IPSL (2006)
#  This software is governed by the CeCILL licence see libIGCM/libIGCM_CeCILL.LIC
#
#**************************************************************

date

echo
echo "#######################################"
echo "#  ANOTHER GREAT DEBUG SIMULATION #"
echo "#######################################"
echo

#D------------------------------------------------------
#D- ENVIRONMENT
#D-     - Loading environment needed to run
#D------------------------------------------------------

MODIPSL=::modipsl::
libIGCM=${MODIPSL}/libIGCM
SRF_comp=::SRF_comp::
OCE_comp=::OCE_comp::
CPL_comp=::CPL_comp::
CHM_comp=::CHM_comp::
JobName=::JOBNAME::
::SUBMIT_DIR::
ExecutionType=::EXECUTION_TYPE::

#-Q- jeanzay . /gpfslocalsup/spack_soft/environment-modules/current/init/ksh
#-Q- mesoipsl . /etc/profile.d/modules.sh

. ::ENVFILE::

module list

#D------------------------------------------------------
#D- EXECUTION
#D-     - Copy binary files from modipsl directory
#D-     - Remove of some out restart files 
#D-     - Execution
#D------------------------------------------------------

cd ${SUBMIT_DIR}

while read EXEIN EXEOUT ;do
 eval EXEIN=${EXEIN}
 cp ${MODIPSL}/bin/${EXEIN} ${EXEOUT}
done < components_binary.txt

if [ X${SRF_comp} = Xy ] ; then
  [ -f sechiba_rest_out.nc ] && rm -f sechiba_rest_out.nc
  [ -f stomate_rest_out.nc ] && rm -f stomate_rest_out.nc
  [ -f driver_rest_out.nc ] && rm -f driver_rest_out.nc
fi
if [ X${OCE_comp} = Xy ] ; then
  [ X${JobName} != X ] && rm -f ${JobName}*restart*.nc
fi

if [ X${CPL_comp} = Xy ] ; then
  if [ -f sstoc_orig.nc ] ; then
    cp sstoc_orig.nc sstoc.nc
    cp flxat_orig.nc flxat.nc
    cp icbrg_orig.nc icbrg.nc
    cp icshf_orig.nc icshf.nc
  else
   cp sstoc.nc sstoc_orig.nc
   cp flxat.nc flxat_orig.nc
   cp icbrg.nc icbrg_orig.nc
   cp icshf.nc icshf_orig.nc
  fi
fi
if [ X${CHM_comp} = Xy ] ; then
  [ -f reprecipinsoil.dat ] && rm -f reprecipinsoil.dat
fi

#-Q- jeanzay #Case MPMD + MPI/OpenMP
#-Q- jeanzay if [ ${ExecutionType} -eq 2 ] ; then
#-Q- jeanzay    _bkIFS=$IFS;
#-Q- jeanzay    IFS=$'\n'; set -f
#-Q- jeanzay    listnodes=($(< <( scontrol show hostnames $SLURM_JOB_NODELIST )))
#-Q- jeanzay    IFS=$_bkIFS; set +f
#-Q- jeanzay    rm -f hostlist ; cp hostlist_template hostlist
#-Q- jeanzay    for nb_proc in `seq 0 $(($SLURM_JOB_NUM_NODES-1))`; do
#-Q- jeanzay        mv hostlist hostlist_tmp
#-Q- jeanzay        host_value=${listnodes[${nb_proc}]}
#-Q- jeanzay        sed -e "s/node_${nb_proc}_X/${host_value}/" hostlist_tmp > hostlist
#-Q- jeanzay    done
#-Q- jeanzay    export SLURM_HOSTFILE=./hostlist
#-Q- jeanzay fi
#-Q- jeanzay # Workaround at Jean-Zay
#-Q- jeanzay source $I_MPI_ROOT/intel64/bin/mpivars.sh release_mt


::EXECUTION:: > out_execution  2>&1
RET=$?
if [ ${RET} -gt 0 ] ; then
    echo "Return code of executable :" ${RET}
fi

date
exit