1 | #-Q- curie ###################### |
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2 | #-Q- curie ## CURIE TGCC/CEA ## |
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3 | #-Q- curie ###################### |
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4 | #-Q- curie #MSUB -r METRICS_NEMO # Nom du job |
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5 | #-Q- curie #MSUB -eo |
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6 | #-Q- curie #MSUB -n 1 # Reservation du processus |
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7 | #-Q- curie #MSUB -T 14400 # Limite de temps elapsed du job |
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8 | #-Q- curie #MSUB -q ::default_node:: |
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9 | #-Q- curie #MSUB -c ::default_core:: |
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10 | #-Q- curie #MSUB -Q normal |
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11 | #-Q- curie #MSUB -A ::default_project:: |
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12 | #-Q- curie set +x |
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13 | #-Q- ada #!/bin/ksh |
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14 | #-Q- ada ####################### |
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15 | #-Q- ada ## ADA IDRIS ## |
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16 | #-Q- ada ####################### |
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17 | #-Q- ada # @ job_type = serial |
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18 | #-Q- ada # @ requirements = (Feature == "prepost") |
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19 | #-Q- ada # Temps Elapsed max. d'une requete hh:mm:ss |
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20 | #-Q- ada # @ wall_clock_limit = 4:00:00 |
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21 | #-Q- ada # Nom du travail LoadLeveler |
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22 | #-Q- ada # @ job_name = METRICS_NEMO |
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23 | #-Q- ada # Fichier de sortie standard du travail |
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24 | #-Q- ada # @ output = $(job_name).$(jobid) |
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25 | #-Q- ada # Fichier de sortie d'erreur du travail |
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26 | #-Q- ada # @ error = $(job_name).$(jobid) |
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27 | #-Q- ada # pour recevoir un mail en cas de depassement du temps Elapsed (ou autre pb.) |
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28 | #-Q- ada # @ notification = error |
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29 | #-Q- ada # @ environment = $POST_DIR ; $Script_Post_Output ; $SUBMIT_DIR ; $libIGCM ; $DEBUG_debug ; $BigBrother ; $R_INIT ; $R_BC ; $StandAlone ; $RESOL_ATM ; $RESOL_OCE ; $RESOL_ICE ; $RESOL_MBG ; $RESOL_SRF ; $RESOL_SBG ; $YEARS ; $DIR_OUT ; $MASTER ; $libIGCM_SX ; wall_clock_limit=$(wall_clock_limit) |
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30 | #-Q- ada # @ queue |
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31 | #-Q- lxiv8 ###################### |
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32 | #-Q- lxiv8 ## OBELIX LSCE ## |
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33 | #-Q- lxiv8 ###################### |
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34 | #-Q- lxiv8 #PBS -N METRICS_NEMO |
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35 | #-Q- lxiv8 #PBS -m a |
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36 | #-Q- lxiv8 #PBS -j oe |
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37 | #-Q- lxiv8 #PBS -q test |
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38 | #-Q- lxiv8 #PBS -o METRICS_NEMO.$$ |
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39 | #-Q- lxiv8 #PBS -S /bin/ksh |
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40 | #-Q- ifort_CICLAD ###################### |
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41 | #-Q- ifort_CICLAD ## CICLAD IPSL ## |
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42 | #-Q- ifort_CICLAD ###################### |
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43 | #-Q- ifort_CICLAD #PBS -N METRICS_NEMO |
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44 | #-Q- ifort_CICLAD #PBS -m a |
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45 | #-Q- ifort_CICLAD #PBS -j oe |
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46 | #-Q- ifort_CICLAD #PBS -q std |
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47 | #-Q- ifort_CICLAD #PBS -S /bin/ksh |
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48 | #-Q- default #!/bin/ksh |
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49 | #-Q- default ################## |
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50 | #-Q- default ## DEFAULT HOST ## |
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51 | #-Q- default ################## |
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52 | |
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53 | #************************************************************** |
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54 | # Author: Sebastien Denvil |
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55 | # Contact: Sebastien.Denvil__at__ipsl.jussieu.fr |
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56 | # $Revision:: $ Revision of last commit |
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57 | # $Author:: $ Author of last commit |
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58 | # $Date:: $ Date of last commit |
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59 | # IPSL (2006) |
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60 | # This software is governed by the CeCILL licence see libIGCM/libIGCM_CeCILL.LIC |
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61 | # |
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62 | #************************************************************** |
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63 | |
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64 | #set -eu |
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65 | #set -vx |
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66 | |
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67 | date |
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68 | |
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69 | #-Q- ada export OMP_NUM_THREADS=1 |
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70 | |
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71 | #D- Task type (computing or post-processing) |
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72 | TaskType=post-processing |
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73 | |
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74 | ###################################################################### |
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75 | |
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76 | . ${libIGCM}/libIGCM_debug/libIGCM_debug.ksh |
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77 | . ${libIGCM}/libIGCM_card/libIGCM_card.ksh |
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78 | . ${libIGCM}/libIGCM_date/libIGCM_date.ksh |
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79 | #------- |
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80 | . ${libIGCM}/libIGCM_sys/libIGCM_sys.ksh |
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81 | . ${libIGCM}/libIGCM_config/libIGCM_config.ksh |
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82 | . ${libIGCM}/libIGCM_comp/libIGCM_comp.ksh |
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83 | #------- |
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84 | IGCM_sys_MkdirWork ${RUN_DIR_PATH} |
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85 | IGCM_sys_Cd ${RUN_DIR_PATH} |
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86 | #------- |
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87 | ( ${DEBUG_debug} ) && IGCM_debug_Check |
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88 | ( ${DEBUG_debug} ) && IGCM_card_Check |
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89 | ( ${DEBUG_debug} ) && IGCM_date_Check |
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90 | |
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91 | ###################################################################### |
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92 | |
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93 | #set -vx |
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94 | |
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95 | # ------------------------------------------------------------------ |
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96 | # Test if all was right before proceeding further |
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97 | # ------------------------------------------------------------------ |
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98 | IGCM_debug_Verif_Exit |
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99 | |
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100 | if [ ${StandAlone} = true ] ; then |
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101 | CARD_DIR=${SUBMIT_DIR} |
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102 | else |
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103 | CARD_DIR=${RUN_DIR_PATH} |
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104 | IGCM_sys_Get_Master ${SUBMIT_DIR}/config.card ${RUN_DIR_PATH} |
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105 | IGCM_sys_Get_Master ${SUBMIT_DIR}/run.card ${RUN_DIR_PATH} |
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106 | IGCM_sys_Get_Master ${SUBMIT_DIR}/COMP ${RUN_DIR_PATH} |
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107 | IGCM_sys_Get_Master ${SUBMIT_DIR}/POST ${RUN_DIR_PATH} |
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108 | fi |
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109 | |
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110 | #================================== |
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111 | # First of all |
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112 | # |
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113 | # Read libIGCM compatibility version in config.card |
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114 | # Read UserChoices section |
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115 | # Read Ensemble section |
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116 | # Read Post section |
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117 | # Define all netcdf output directories |
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118 | #================================== |
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119 | IGCM_config_CommonConfiguration ${CARD_DIR}/config.card |
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120 | |
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121 | # ------------------------------------------------------------------ |
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122 | # Activate BigBrother so as to supervise this job |
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123 | # ------------------------------------------------------------------ |
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124 | IGCM_debug_BigBro_Initialize |
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125 | |
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126 | #================================== |
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127 | # Then set up several directories |
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128 | #================================== |
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129 | R_OUT_OCE=${R_SAVE}/OCE |
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130 | DIR_OUT=${DIR_OUT:=SE} |
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131 | RUN_DIR=${RUN_DIR_PATH} |
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132 | IGCM_sys_MkdirArchive ${R_FIGR} |
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133 | IGCM_sys_MkdirWork ${RUN_DIR} |
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134 | IGCM_sys_Cd ${RUN_DIR} |
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135 | IGCM_sys_MkdirWork METRICS/SE_${YEARS} |
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136 | |
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137 | #================================== |
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138 | # Get the file |
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139 | #================================== |
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140 | IGCM_sys_Get ${R_OUT_OCE}/Analyse/${DIR_OUT}/${config_UserChoices_JobName}_SE_${YEARS}_1M_grid_T.nc ${RUN_DIR} |
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141 | |
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142 | #================================== |
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143 | # Rename variables |
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144 | #================================== |
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145 | IGCM_sys_ncrename -v .votemper,t -v .thetao,to -v .vosaline,so -v .somxl010,mldpt -v .mldr10_1,mldpt -v .sosstsst,tos -v .sossheig,zos -v .sosaline,sos -v .sowaflup,wfo ${config_UserChoices_JobName}_SE_${YEARS}_1M_grid_T.nc |
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146 | |
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147 | #================================== |
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148 | # Interpolate vertical levels |
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149 | #================================== |
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150 | IGCM_sys_cdo intlevel,50,100,250,500,1000 -selvar,to,so ${config_UserChoices_JobName}_SE_${YEARS}_1M_grid_T.nc ${config_UserChoices_JobName}_SE_${YEARS}_1MVertLevels_grid_T.nc |
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151 | |
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152 | #================================== |
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153 | # Tweak the grid |
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154 | #================================== |
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155 | if [ ${RESOL_ORCA} = 'eORCA1' ] ; then |
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156 | orca_grid='/ccc/scratch/cont003/dsm/p86mart/ORCA1_BLD/DOMSK/eORCA1.0/IPSL.eORCA1.0_gridCF.nc' |
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157 | elif [ ${RESOL_ORCA} = 'ORCA1' ] ; then |
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158 | orca_grid='/ccc/work/cont003/dsm/p86ipsl/database/grids/NEMO1_grid.nc' |
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159 | elif [ ${RESOL_ORCA} = 'ORCA2' ] ; then |
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160 | orca_grid='/ccc/work/cont003/dsm/p86ipsl/database/grids/ORCA2_lon_lat_bounds_for_metrics.nc' |
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161 | fi |
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162 | |
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163 | IGCM_sys_ncks --append -v bounds_lat,bounds_lon ${orca_grid} ${config_UserChoices_JobName}_SE_${YEARS}_1M_grid_T.nc |
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164 | IGCM_sys_ncatted -O -a bounds,nav_lat,o,c,bounds_lat ${config_UserChoices_JobName}_SE_${YEARS}_1M_grid_T.nc |
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165 | IGCM_sys_ncatted -O -a bounds,nav_lon,o,c,bounds_lon ${config_UserChoices_JobName}_SE_${YEARS}_1M_grid_T.nc |
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166 | |
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167 | IGCM_sys_ncks --append -v bounds_lat,bounds_lon ${orca_grid} ${config_UserChoices_JobName}_SE_${YEARS}_1MVertLevels_grid_T.nc |
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168 | IGCM_sys_ncatted -O -a bounds,nav_lat,o,c,bounds_lat ${config_UserChoices_JobName}_SE_${YEARS}_1MVertLevels_grid_T.nc |
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169 | IGCM_sys_ncatted -O -a bounds,nav_lon,o,c,bounds_lon ${config_UserChoices_JobName}_SE_${YEARS}_1MVertLevels_grid_T.nc |
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170 | |
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171 | #================================== |
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172 | # SET UP THE PATH (will be done in libIGCM_sys later) |
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173 | #================================== |
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174 | export PATH=${PCMDI_MP}/work_install_v2/PCMDI_METRICS/bin:${PATH} |
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175 | |
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176 | #================================== |
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177 | # Group of metrics we will compute |
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178 | #================================== |
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179 | GroupsOfMetrics='NEMO_PCMDI NEMO_LatBandsAndRegions NEMO_VertLevels' |
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180 | MP_Version=v2.12 |
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181 | |
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182 | for metricsGroupName in ${GroupsOfMetrics} ; do |
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183 | |
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184 | #================================== |
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185 | # Appropriate configuration template |
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186 | #================================== |
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187 | IGCM_sys_Cp ${PCMDI_MP}/work_install_${MP_Version}/PCMDI_METRICS/doc/parameter_files/input_parameters_${metricsGroupName}_template.py template.py |
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188 | |
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189 | #================================== |
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190 | # Configure template for grid_T.nc |
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191 | #================================== |
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192 | |
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193 | if [ ${metricsGroupName} != "NEMO_VertLevels" ] ; then |
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194 | IGCM_comp_modifyFile template.py path_and_filename \'./${config_UserChoices_JobName}_SE_${YEARS}_1M_grid_T.nc\' |
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195 | IGCM_comp_modifyFile template.py filename \'${config_UserChoices_JobName}_SE_${YEARS}_1M_grid_T.nc\' |
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196 | else |
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197 | IGCM_comp_modifyFile template.py path_and_filename \'./${config_UserChoices_JobName}_SE_${YEARS}_1MVertLevels_grid_T.nc\' |
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198 | IGCM_comp_modifyFile template.py filename \'${config_UserChoices_JobName}_SE_${YEARS}_1MVertLevels_grid_T.nc\' |
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199 | fi |
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200 | IGCM_comp_modifyFile template.py attributes_provided \'IPSL_Extended\' |
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201 | IGCM_comp_modifyFile template.py Login \'${LOGIN}\' |
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202 | IGCM_comp_modifyFile template.py model_versions \[\'${config_UserChoices_TagName}\'\] |
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203 | IGCM_comp_modifyFile template.py experiment \'${config_UserChoices_ExperimentName}\' |
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204 | IGCM_comp_modifyFile template.py realization \'${config_UserChoices_JobName}\' |
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205 | IGCM_comp_modifyFile template.py project_id \'IPSL\-${config_UserChoices_SpaceName}\' |
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206 | IGCM_comp_modifyFile template.py ModelFreeSpace "\"${config_UserChoices_LongName}\"" |
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207 | IGCM_comp_modifyFile template.py case_id \'${metricsGroupName}\' |
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208 | IGCM_comp_modifyFile template.py obs_data_path \'${PCMDI_MP}/references-for-metrics/obs\' |
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209 | IGCM_comp_modifyFile template.py metrics_output_path \'${RUN_DIR}/METRICS/SE_${YEARS}\' |
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210 | IGCM_comp_modifyFile template.py model_clims_interpolated_output \'${RUN_DIR}\' |
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211 | |
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212 | #================================== |
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213 | # Compute metrics |
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214 | #================================== |
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215 | python ${PCMDI_MP}/work_install_${MP_Version}/PCMDI_METRICS/bin/pcmdi_metrics_driver.py -p template.py |
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216 | |
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217 | #================================== |
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218 | # Export metrics to mongoDB system |
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219 | #================================== |
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220 | IGCM_debug_sendAMQP_Metrics METRICS/SE_${YEARS}/${metricsGroupName} ${metricsGroupName} |
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221 | |
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222 | done |
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223 | |
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224 | #================================== |
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225 | # Save files |
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226 | #================================== |
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227 | IGCM_sys_Put_Dir METRICS ${R_FIGR} |
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228 | IGCM_sys_Rm -Rf METRICS |
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229 | IGCM_sys_Rm ${config_UserChoices_JobName}_SE_${YEARS}_1M_grid_T.nc |
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230 | |
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231 | # Clean RUN_DIR_PATH (necessary for cesium and titane only) |
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232 | IGCM_sys_RmRunDir -Rf ${RUN_DIR_PATH} |
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233 | |
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234 | # ------------------------------------------------------------------ |
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235 | # Finalize BigBrother to inform that the jobs end |
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236 | # ------------------------------------------------------------------ |
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237 | IGCM_debug_BigBro_Finalize |
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