source: trunk/libIGCM/AA_metrics_NEMO @ 1398

Last change on this file since 1398 was 1379, checked in by mafoipsl, 7 years ago

MAF+JS : comment bounds line useless since XIOS.

  • Property svn:keywords set to Author Revision Date
File size: 9.8 KB
Line 
1#-Q- curie ######################
2#-Q- curie ## CURIE   TGCC/CEA ##
3#-Q- curie ######################
4#-Q- curie #MSUB -r METRICS_NEMO       # Nom du job
5#-Q- curie #MSUB -eo
6#-Q- curie #MSUB -n 1              # Reservation du processus
7#-Q- curie #MSUB -T 14400          # Limite de temps elapsed du job
8#-Q- curie #MSUB -q ::default_node::
9#-Q- curie #MSUB -c ::default_core::
10#-Q- curie #MSUB -Q normal
11#-Q- curie #MSUB -A ::default_project::
12#-Q- curie set +x
13#-Q- ada #!/bin/ksh
14#-Q- ada #######################
15#-Q- ada ## ADA         IDRIS ##
16#-Q- ada #######################
17#-Q- ada # @ job_type = serial
18#-Q- ada # @ requirements = (Feature == "prepost")
19#-Q- ada # Temps Elapsed max. d'une requete hh:mm:ss
20#-Q- ada # @ wall_clock_limit = 4:00:00
21#-Q- ada # Nom du travail LoadLeveler
22#-Q- ada # @ job_name   = METRICS_NEMO
23#-Q- ada # Fichier de sortie standard du travail
24#-Q- ada # @ output     = $(job_name).$(jobid)
25#-Q- ada # Fichier de sortie d'erreur du travail
26#-Q- ada # @ error      =  $(job_name).$(jobid)
27#-Q- ada # pour recevoir un mail en cas de depassement du temps Elapsed (ou autre pb.)
28#-Q- ada # @ notification = error
29#-Q- ada # @ environment  = $POST_DIR ; $Script_Post_Output ; $SUBMIT_DIR ; $libIGCM ; $DEBUG_debug ; $BigBrother ; $postProcessingStopLevel ; $R_INIT ; $R_BC ; $StandAlone ; $RESOL_ATM ; $RESOL_OCE ; $RESOL_ICE ; $RESOL_MBG ; $RESOL_SRF ; $RESOL_SBG ; $YEARS ; $DIR_OUT ; $MASTER ; $libIGCM_SX ; wall_clock_limit=$(wall_clock_limit)
30#-Q- ada # @ queue
31#-Q- lxiv8 ######################
32#-Q- lxiv8 ## OBELIX      LSCE ##
33#-Q- lxiv8 ######################
34#-Q- lxiv8 #PBS -N METRICS_NEMO
35#-Q- lxiv8 #PBS -m a
36#-Q- lxiv8 #PBS -j oe
37#-Q- lxiv8 #PBS -q test
38#-Q- lxiv8 #PBS -o METRICS_NEMO.$$
39#-Q- lxiv8 #PBS -S /bin/ksh
40#-Q- ifort_CICLAD ######################
41#-Q- ifort_CICLAD ##   CICLAD    IPSL ##
42#-Q- ifort_CICLAD ######################
43#-Q- ifort_CICLAD #PBS -N METRICS_NEMO
44#-Q- ifort_CICLAD #PBS -m a
45#-Q- ifort_CICLAD #PBS -j oe
46#-Q- ifort_CICLAD #PBS -q std
47#-Q- ifort_CICLAD #PBS -S /bin/ksh
48#-Q- default #!/bin/ksh
49#-Q- default ##################
50#-Q- default ## DEFAULT HOST ##
51#-Q- default ##################
52
53#**************************************************************
54# Author: Sebastien Denvil
55# Contact: Sebastien.Denvil__at__ipsl.jussieu.fr
56# $Revision::                                          $ Revision of last commit
57# $Author::                                            $ Author of last commit
58# $Date::                                              $ Date of last commit
59# IPSL (2006)
60#  This software is governed by the CeCILL licence see libIGCM/libIGCM_CeCILL.LIC
61#
62#**************************************************************
63
64#set -eu
65#set -vx
66
67date
68
69#-Q- ada export OMP_NUM_THREADS=1
70
71#D- Task type DO NOT CHANGE (computing, post-processing or checking)
72TaskType=post-processing
73
74######################################################################
75
76. ${libIGCM}/libIGCM_debug/libIGCM_debug.ksh
77. ${libIGCM}/libIGCM_card/libIGCM_card.ksh
78. ${libIGCM}/libIGCM_date/libIGCM_date.ksh
79#-------
80. ${libIGCM}/libIGCM_sys/libIGCM_sys.ksh
81. ${libIGCM}/libIGCM_config/libIGCM_config.ksh
82. ${libIGCM}/libIGCM_comp/libIGCM_comp.ksh
83#-------
84IGCM_sys_MkdirWork ${RUN_DIR_PATH}
85IGCM_sys_Cd ${RUN_DIR_PATH}
86#-------
87( ${DEBUG_debug} ) && IGCM_debug_Check
88( ${DEBUG_debug} ) && IGCM_card_Check
89( ${DEBUG_debug} ) && IGCM_date_Check
90
91######################################################################
92
93#set -vx
94
95# ------------------------------------------------------------------
96# Test if all was right before proceeding further
97# ------------------------------------------------------------------
98IGCM_debug_Verif_Exit
99
100if [ ${StandAlone} = true ] ; then
101    CARD_DIR=${SUBMIT_DIR}
102else
103    CARD_DIR=${RUN_DIR_PATH}
104    IGCM_sys_Get_Master ${SUBMIT_DIR}/config.card ${RUN_DIR_PATH}
105    IGCM_sys_Get_Master ${SUBMIT_DIR}/run.card    ${RUN_DIR_PATH}
106    IGCM_sys_Get_Master ${SUBMIT_DIR}/COMP        ${RUN_DIR_PATH}
107    IGCM_sys_Get_Master ${SUBMIT_DIR}/POST        ${RUN_DIR_PATH}
108fi
109
110#==================================
111# First of all
112#
113# Read libIGCM compatibility version in config.card
114# Read UserChoices section
115# Read Ensemble section
116# Read Post section
117# Define all netcdf output directories
118#==================================
119IGCM_config_CommonConfiguration ${CARD_DIR}/config.card
120
121# ------------------------------------------------------------------
122# Activate BigBrother so as to supervise this job
123# ------------------------------------------------------------------
124IGCM_debug_BigBro_Initialize
125
126#==================================
127# Then set up several directories
128#==================================
129R_OUT_OCE=${R_SAVE}/OCE
130DIR_OUT=${DIR_OUT:=SE}
131RUN_DIR=${RUN_DIR_PATH}
132IGCM_sys_MkdirArchive ${R_FIGR}
133IGCM_sys_MkdirWork ${RUN_DIR}
134IGCM_sys_Cd ${RUN_DIR}
135IGCM_sys_MkdirWork METRICS/SE_${YEARS}
136
137#==================================
138# Get the file
139#==================================
140IGCM_sys_Get ${R_OUT_OCE}/Analyse/${DIR_OUT}/${config_UserChoices_JobName}_SE_${YEARS}_1M_grid_T.nc ${RUN_DIR}
141
142#==================================
143# Rename variables
144#==================================
145IGCM_sys_ncrename -v .votemper,t -v .thetao,to -v .vosaline,so -v .somxl010,mldpt -v .mldr10_1,mldpt -v .sosstsst,tos -v .sossheig,zos -v .sosaline,sos -v .sowaflup,wfo ${config_UserChoices_JobName}_SE_${YEARS}_1M_grid_T.nc
146
147#==================================
148# Interpolate vertical levels
149#==================================
150IGCM_sys_cdo intlevel,50,100,250,500,1000 -selvar,to,so ${config_UserChoices_JobName}_SE_${YEARS}_1M_grid_T.nc ${config_UserChoices_JobName}_SE_${YEARS}_1MVertLevels_grid_T.nc
151
152#==================================
153# Identify grid label from opa9.card
154#==================================
155IGCM_card_DefineVariableFromOption ${CARD_DIR}/COMP/opa9.card UserChoices ORCA_version
156IGCM_debug_Print 3 "ORCA_VERSION=${opa9_UserChoices_ORCA_version}"
157
158#==================================
159# To be found soon from the synchronized igcmg repository instead
160#==================================
161orca_grid=${DB}/grids/${opa9_UserChoices_ORCA_version}_grid.nc
162
163## IGCM_sys_ncks --append -v bounds_lat,bounds_lon ${orca_grid} ${config_UserChoices_JobName}_SE_${YEARS}_1M_grid_T.nc
164## IGCM_sys_ncatted -O -a bounds,nav_lat,o,c,bounds_lat ${config_UserChoices_JobName}_SE_${YEARS}_1M_grid_T.nc
165## IGCM_sys_ncatted -O -a bounds,nav_lon,o,c,bounds_lon ${config_UserChoices_JobName}_SE_${YEARS}_1M_grid_T.nc
166
167## IGCM_sys_ncks --append -v bounds_lat,bounds_lon ${orca_grid} ${config_UserChoices_JobName}_SE_${YEARS}_1MVertLevels_grid_T.nc
168## IGCM_sys_ncatted -O -a bounds,nav_lat,o,c,bounds_lat ${config_UserChoices_JobName}_SE_${YEARS}_1MVertLevels_grid_T.nc
169## IGCM_sys_ncatted -O -a bounds,nav_lon,o,c,bounds_lon ${config_UserChoices_JobName}_SE_${YEARS}_1MVertLevels_grid_T.nc
170
171#==================================
172# Group of metrics we will compute
173#==================================
174GroupsOfMetrics='NEMO_PCMDI NEMO_LatBandsAndRegions NEMO_VertLevels'
175MP_Version=v3
176
177#==================================
178# SET UP THE PATH (wont be done in libIGCM_sys because setup_runtime.sh is way too intrusive)
179#==================================
180. ${PCMDI_MP}/work_install_${MP_Version}/PCMDI_METRICS/bin/setup_runtime.sh
181
182for metricsGroupName in ${GroupsOfMetrics} ; do
183
184  #==================================
185  # Appropriate configuration template
186  #==================================
187  IGCM_sys_Cp ${PCMDI_MP}/work_install_${MP_Version}/PCMDI_METRICS/doc/parameter_files/input_parameters_${metricsGroupName}_template.py template.py
188
189  #==================================
190  # Configure template for grid_T.nc
191  #==================================
192
193  if [ ${metricsGroupName} != "NEMO_VertLevels" ] ; then
194    IGCM_comp_modifyFile template.py path_and_filename \'./${config_UserChoices_JobName}_SE_${YEARS}_1M_grid_T.nc\'
195    IGCM_comp_modifyFile template.py filename \'${config_UserChoices_JobName}_SE_${YEARS}_1M_grid_T.nc\'
196  else
197    IGCM_comp_modifyFile template.py path_and_filename \'./${config_UserChoices_JobName}_SE_${YEARS}_1MVertLevels_grid_T.nc\'
198    IGCM_comp_modifyFile template.py filename \'${config_UserChoices_JobName}_SE_${YEARS}_1MVertLevels_grid_T.nc\'
199  fi
200  IGCM_comp_modifyFile template.py attributes_provided \'IPSL_Extended\'
201  IGCM_comp_modifyFile template.py Login  \'${LOGIN}\'
202  IGCM_comp_modifyFile template.py model_versions \[\'${config_UserChoices_TagName}\'\]
203  IGCM_comp_modifyFile template.py experiment  \'${config_UserChoices_ExperimentName}\'
204  IGCM_comp_modifyFile template.py realization \'${config_UserChoices_JobName}\'
205  IGCM_comp_modifyFile template.py project_id \'IPSL\-${config_UserChoices_SpaceName}\'
206  IGCM_comp_modifyFile template.py ModelFreeSpace "\"${config_UserChoices_LongName}\""
207  IGCM_comp_modifyFile template.py case_id \'${metricsGroupName}\'
208  IGCM_comp_modifyFile template.py obs_data_path  \'${R_IN}/ReferenceDatasets/climatos\'
209  IGCM_comp_modifyFile template.py metrics_output_path \'${RUN_DIR}/METRICS/SE_${YEARS}\'
210  IGCM_comp_modifyFile template.py model_clims_interpolated_output \'${RUN_DIR}\'
211
212  #==================================
213  # Compute metrics
214  #==================================
215  python ${PCMDI_MP}/work_install_${MP_Version}/PCMDI_METRICS/bin/pcmdi_metrics_driver.py -p template.py
216
217  #==================================
218  # Export metrics to mongoDB system
219  #==================================
220  IGCM_debug_sendAMQP_Metrics METRICS/SE_${YEARS}/${metricsGroupName} ${metricsGroupName}
221
222done 
223
224#==================================
225# Save files
226#==================================
227IGCM_sys_Put_Dir METRICS ${R_FIGR}
228IGCM_sys_Rm -Rf METRICS
229IGCM_sys_Rm ${config_UserChoices_JobName}_SE_${YEARS}_1M_grid_T.nc
230
231# Clean RUN_DIR_PATH (necessary for cesium and titane only)
232IGCM_sys_RmRunDir -Rf ${RUN_DIR_PATH}
233
234# ------------------------------------------------------------------
235# Finalize BigBrother to inform that the jobs end
236# ------------------------------------------------------------------
237IGCM_debug_BigBro_Finalize
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