source: trunk/libIGCM/AA_metrics_NEMO @ 1516

Last change on this file since 1516 was 1468, checked in by mafoipsl, 6 years ago

On curie : set output files for all jobs.

On irene :

  • set output files for all jobs like curie
  • add the possibility to use xlarge nodes (for free) for post-processing or skylake nodes
  • add a question to set project used for post-processing and delete -A option in libIGCM_sys_irene
  • display only available projects for computing or post-processing on irene
  • Property svn:keywords set to Author Revision Date
File size: 10.4 KB
Line 
1#-Q- curie ######################
2#-Q- curie ## CURIE   TGCC/CEA ##
3#-Q- curie ######################
4#-Q- curie #MSUB -r METRICS_NEMO       # Nom du job
5#-Q- curie #MSUB -o METRICS_NEMO.out_%I
6#-Q- curie #MSUB -e METRICS_NEMO.out_%I
7#-Q- curie #MSUB -n 1              # Reservation du processus
8#-Q- curie #MSUB -T 14400          # Limite de temps elapsed du job
9#-Q- curie #MSUB -q ::default_node::
10#-Q- curie #MSUB -c ::default_core::
11#-Q- curie #MSUB -Q normal
12#-Q- curie #MSUB -A ::default_project::
13#-Q- curie set +x
14#-Q- irene ######################
15#-Q- irene ## IRENE   TGCC/CEA ##
16#-Q- irene ######################
17#-Q- irene #MSUB -r METRICS_NEMO # Job name
18#-Q- irene #MSUB -o METRICS_NEMO.out_%I
19#-Q- irene #MSUB -e METRICS_NEMO.out_%I
20#-Q- irene #MSUB -n 1
21#-Q- irene #MSUB -T 14400        # Maximum elapsed time
22#-Q- irene #MSUB -q ::default_node::
23#-Q- irene #MSUB -c ::default_core::
24#-Q- irene #MSUB -Q normal
25#-Q- irene #MSUB -A ::default_post_project::
26#-Q- irene #MSUB -m store,work,scratch
27#-Q- irene set +x
28#-Q- ada #!/bin/ksh
29#-Q- ada #######################
30#-Q- ada ## ADA         IDRIS ##
31#-Q- ada #######################
32#-Q- ada # @ job_type = mpich
33#-Q- ada # @ requirements = (Feature == "prepost")
34#-Q- ada # Temps Elapsed max. d'une requete hh:mm:ss
35#-Q- ada # @ wall_clock_limit = 4:00:00
36#-Q- ada # Nom du travail LoadLeveler
37#-Q- ada # @ job_name   = METRICS_NEMO
38#-Q- ada # Fichier de sortie standard du travail
39#-Q- ada # @ output     = $(job_name).$(jobid)
40#-Q- ada # Fichier de sortie d'erreur du travail
41#-Q- ada # @ error      =  $(job_name).$(jobid)
42#-Q- ada # pour recevoir un mail en cas de depassement du temps Elapsed (ou autre pb.)
43#-Q- ada # @ notification = error
44#-Q- ada # @ environment  = $POST_DIR ; $Script_Post_Output ; $SUBMIT_DIR ; $libIGCM ; $DEBUG_debug ; $BigBrother ; $postProcessingStopLevel ; $R_INIT ; $R_BC ; $StandAlone ; $RESOL_ATM ; $RESOL_OCE ; $RESOL_ICE ; $RESOL_MBG ; $RESOL_SRF ; $RESOL_SBG ; $YEARS ; $DIR_OUT ; $MASTER ; $libIGCM_SX ; wall_clock_limit=$(wall_clock_limit)
45#-Q- ada # @ queue
46#-Q- lxiv8 ######################
47#-Q- lxiv8 ## OBELIX      LSCE ##
48#-Q- lxiv8 ######################
49#-Q- lxiv8 #PBS -N METRICS_NEMO
50#-Q- lxiv8 #PBS -m a
51#-Q- lxiv8 #PBS -j oe
52#-Q- lxiv8 #PBS -q test
53#-Q- lxiv8 #PBS -o METRICS_NEMO.$$
54#-Q- lxiv8 #PBS -S /bin/ksh
55#-Q- ifort_CICLAD ######################
56#-Q- ifort_CICLAD ##   CICLAD    IPSL ##
57#-Q- ifort_CICLAD ######################
58#-Q- ifort_CICLAD #PBS -N METRICS_NEMO
59#-Q- ifort_CICLAD #PBS -m a
60#-Q- ifort_CICLAD #PBS -j oe
61#-Q- ifort_CICLAD #PBS -q std
62#-Q- ifort_CICLAD #PBS -S /bin/ksh
63#-Q- default #!/bin/ksh
64#-Q- default ##################
65#-Q- default ## DEFAULT HOST ##
66#-Q- default ##################
67
68#**************************************************************
69# Author: Sebastien Denvil
70# Contact: Sebastien.Denvil__at__ipsl.jussieu.fr
71# $Revision::                                          $ Revision of last commit
72# $Author::                                            $ Author of last commit
73# $Date::                                              $ Date of last commit
74# IPSL (2006)
75#  This software is governed by the CeCILL licence see libIGCM/libIGCM_CeCILL.LIC
76#
77#**************************************************************
78
79#set -eu
80#set -vx
81
82date
83
84#-Q- ada export OMP_NUM_THREADS=1
85
86#D- Task type DO NOT CHANGE (computing, post-processing or checking)
87TaskType=post-processing
88
89######################################################################
90
91. ${libIGCM}/libIGCM_debug/libIGCM_debug.ksh
92. ${libIGCM}/libIGCM_card/libIGCM_card.ksh
93. ${libIGCM}/libIGCM_date/libIGCM_date.ksh
94#-------
95. ${libIGCM}/libIGCM_sys/libIGCM_sys.ksh
96. ${libIGCM}/libIGCM_config/libIGCM_config.ksh
97. ${libIGCM}/libIGCM_comp/libIGCM_comp.ksh
98#-------
99IGCM_sys_MkdirWork ${RUN_DIR_PATH}
100IGCM_sys_Cd ${RUN_DIR_PATH}
101#-------
102( ${DEBUG_debug} ) && IGCM_debug_Check
103( ${DEBUG_debug} ) && IGCM_card_Check
104( ${DEBUG_debug} ) && IGCM_date_Check
105
106######################################################################
107
108#set -vx
109
110# ------------------------------------------------------------------
111# Test if all was right before proceeding further
112# ------------------------------------------------------------------
113IGCM_debug_Verif_Exit
114
115if [ ${StandAlone} = true ] ; then
116    CARD_DIR=${SUBMIT_DIR}
117else
118    CARD_DIR=${RUN_DIR_PATH}
119    IGCM_sys_Get_Master ${SUBMIT_DIR}/config.card ${RUN_DIR_PATH}
120    IGCM_sys_Get_Master ${SUBMIT_DIR}/run.card    ${RUN_DIR_PATH}
121    IGCM_sys_Get_Master ${SUBMIT_DIR}/COMP        ${RUN_DIR_PATH}
122    IGCM_sys_Get_Master ${SUBMIT_DIR}/POST        ${RUN_DIR_PATH}
123fi
124
125#==================================
126# First of all
127#
128# Read libIGCM compatibility version in config.card
129# Read UserChoices section
130# Read Ensemble section
131# Read Post section
132# Define all netcdf output directories
133#==================================
134IGCM_config_CommonConfiguration ${CARD_DIR}/config.card
135
136# ------------------------------------------------------------------
137# Activate BigBrother so as to supervise this job
138# ------------------------------------------------------------------
139IGCM_debug_BigBro_Initialize
140
141#==================================
142# Then set up several directories
143#==================================
144R_OUT_OCE=${R_SAVE}/OCE
145DIR_OUT=${DIR_OUT:=SE}
146RUN_DIR=${RUN_DIR_PATH}
147IGCM_sys_MkdirArchive ${R_FIGR}
148IGCM_sys_MkdirWork ${RUN_DIR}
149IGCM_sys_Cd ${RUN_DIR}
150IGCM_sys_MkdirWork METRICS/SE_${YEARS}
151
152#==================================
153# Get the file
154#==================================
155IGCM_sys_Get ${R_OUT_OCE}/Analyse/${DIR_OUT}/${config_UserChoices_JobName}_SE_${YEARS}_1M_grid_T.nc ${RUN_DIR}
156
157#==================================
158# Rename variables
159#==================================
160IGCM_sys_ncrename -v .votemper,t -v .thetao,to -v .vosaline,so -v .somxl010,mldpt -v .mldr10_1,mldpt -v .sosstsst,tos -v .sossheig,zos -v .sosaline,sos -v .sowaflup,wfo ${config_UserChoices_JobName}_SE_${YEARS}_1M_grid_T.nc
161
162#==================================
163# Interpolate vertical levels
164#==================================
165IGCM_sys_cdo intlevel,50,100,250,500,1000 -selvar,to,so ${config_UserChoices_JobName}_SE_${YEARS}_1M_grid_T.nc ${config_UserChoices_JobName}_SE_${YEARS}_1MVertLevels_grid_T.nc
166
167#==================================
168# Identify grid label from opa9.card
169#==================================
170IGCM_card_DefineVariableFromOption ${CARD_DIR}/COMP/opa9.card UserChoices ORCA_version
171IGCM_debug_Print 3 "ORCA_VERSION=${opa9_UserChoices_ORCA_version}"
172
173#==================================
174# To be found soon from the synchronized igcmg repository instead
175#==================================
176orca_grid=${DB}/grids/${opa9_UserChoices_ORCA_version}_grid.nc
177
178## IGCM_sys_ncks --append -v bounds_lat,bounds_lon ${orca_grid} ${config_UserChoices_JobName}_SE_${YEARS}_1M_grid_T.nc
179## IGCM_sys_ncatted -O -a bounds,nav_lat,o,c,bounds_lat ${config_UserChoices_JobName}_SE_${YEARS}_1M_grid_T.nc
180## IGCM_sys_ncatted -O -a bounds,nav_lon,o,c,bounds_lon ${config_UserChoices_JobName}_SE_${YEARS}_1M_grid_T.nc
181
182## IGCM_sys_ncks --append -v bounds_lat,bounds_lon ${orca_grid} ${config_UserChoices_JobName}_SE_${YEARS}_1MVertLevels_grid_T.nc
183## IGCM_sys_ncatted -O -a bounds,nav_lat,o,c,bounds_lat ${config_UserChoices_JobName}_SE_${YEARS}_1MVertLevels_grid_T.nc
184## IGCM_sys_ncatted -O -a bounds,nav_lon,o,c,bounds_lon ${config_UserChoices_JobName}_SE_${YEARS}_1MVertLevels_grid_T.nc
185
186#==================================
187# Group of metrics we will compute
188#==================================
189GroupsOfMetrics='NEMO_PCMDI NEMO_LatBandsAndRegions NEMO_VertLevels'
190MP_Version=v3
191
192#==================================
193# SET UP THE PATH (wont be done in libIGCM_sys because setup_runtime.sh is way too intrusive)
194#==================================
195. ${PCMDI_MP}/work_install_${MP_Version}/PCMDI_METRICS/bin/setup_runtime.sh
196
197for metricsGroupName in ${GroupsOfMetrics} ; do
198
199  #==================================
200  # Appropriate configuration template
201  #==================================
202  IGCM_sys_Cp ${PCMDI_MP}/work_install_${MP_Version}/PCMDI_METRICS/doc/parameter_files/input_parameters_${metricsGroupName}_template.py template.py
203
204  #==================================
205  # Configure template for grid_T.nc
206  #==================================
207
208  if [ ${metricsGroupName} != "NEMO_VertLevels" ] ; then
209    IGCM_comp_modifyFile template.py path_and_filename \'./${config_UserChoices_JobName}_SE_${YEARS}_1M_grid_T.nc\'
210    IGCM_comp_modifyFile template.py filename \'${config_UserChoices_JobName}_SE_${YEARS}_1M_grid_T.nc\'
211  else
212    IGCM_comp_modifyFile template.py path_and_filename \'./${config_UserChoices_JobName}_SE_${YEARS}_1MVertLevels_grid_T.nc\'
213    IGCM_comp_modifyFile template.py filename \'${config_UserChoices_JobName}_SE_${YEARS}_1MVertLevels_grid_T.nc\'
214  fi
215  IGCM_comp_modifyFile template.py attributes_provided \'IPSL_Extended\'
216  IGCM_comp_modifyFile template.py Login  \'${LOGIN}\'
217  IGCM_comp_modifyFile template.py model_versions \[\'${config_UserChoices_TagName}\'\]
218  IGCM_comp_modifyFile template.py experiment  \'${config_UserChoices_ExperimentName}\'
219  IGCM_comp_modifyFile template.py realization \'${config_UserChoices_JobName}\'
220  IGCM_comp_modifyFile template.py project_id \'IPSL\-${config_UserChoices_SpaceName}\'
221  IGCM_comp_modifyFile template.py ModelFreeSpace "\"${config_UserChoices_LongName}\""
222  IGCM_comp_modifyFile template.py case_id \'${metricsGroupName}\'
223  IGCM_comp_modifyFile template.py obs_data_path  \'${R_IN}/ReferenceDatasets/climatos\'
224  IGCM_comp_modifyFile template.py metrics_output_path \'${RUN_DIR}/METRICS/SE_${YEARS}\'
225  IGCM_comp_modifyFile template.py model_clims_interpolated_output \'${RUN_DIR}\'
226
227  #==================================
228  # Compute metrics
229  #==================================
230  python ${PCMDI_MP}/work_install_${MP_Version}/PCMDI_METRICS/bin/pcmdi_metrics_driver.py -p template.py
231
232  #==================================
233  # Export metrics to mongoDB system
234  #==================================
235  IGCM_debug_sendAMQP_Metrics METRICS/SE_${YEARS}/${metricsGroupName} ${metricsGroupName}
236
237done
238
239#==================================
240# Save files
241#==================================
242IGCM_sys_Put_Dir METRICS ${R_FIGR}
243IGCM_sys_Rm -Rf METRICS
244IGCM_sys_Rm ${config_UserChoices_JobName}_SE_${YEARS}_1M_grid_T.nc
245
246# Clean RUN_DIR_PATH (necessary for cesium and titane only)
247IGCM_sys_RmRunDir -Rf ${RUN_DIR_PATH}
248
249# ------------------------------------------------------------------
250# Finalize BigBrother to inform that the jobs end
251# ------------------------------------------------------------------
252IGCM_debug_BigBro_Finalize
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