source: trunk/libIGCM/AA_metrics_ORCHIDEE @ 1510

Last change on this file since 1510 was 1468, checked in by mafoipsl, 6 years ago

On curie : set output files for all jobs.

On irene :

  • set output files for all jobs like curie
  • add the possibility to use xlarge nodes (for free) for post-processing or skylake nodes
  • add a question to set project used for post-processing and delete -A option in libIGCM_sys_irene
  • display only available projects for computing or post-processing on irene
  • Property svn:keywords set to Author Revision Date
File size: 8.8 KB
Line 
1#-Q- curie ######################
2#-Q- curie ## CURIE   TGCC/CEA ##
3#-Q- curie ######################
4#-Q- curie #MSUB -r METRICS_ORCHIDEE       # Nom du job
5#-Q- curie #MSUB -o METRICS_ORCHIDEE.out_%I
6#-Q- curie #MSUB -e METRICS_ORCHIDEE.out_%I
7#-Q- curie #MSUB -n 1              # Reservation du processus
8#-Q- curie #MSUB -T 14400          # Limite de temps elapsed du job
9#-Q- curie #MSUB -q ::default_node::
10#-Q- curie #MSUB -Q normal
11#-Q- curie #MSUB -c ::default_core::
12#-Q- curie #MSUB -A ::default_project::
13#-Q- curie set +x
14#-Q- irene ######################
15#-Q- irene ## IRENE   TGCC/CEA ##
16#-Q- irene ######################
17#-Q- irene #MSUB -r METRICS_ORCHIDEE # Job name
18#-Q- irene #MSUB -o METRICS_ORCHIDEE.out_%I
19#-Q- irene #MSUB -e METRICS_ORCHIDEE.out_%I
20#-Q- irene #MSUB -n 1
21#-Q- irene #MSUB -T 14400           # Maximum elapsed time
22#-Q- irene #MSUB -q ::default_node::
23#-Q- irene #MSUB -c ::default_core::
24#-Q- irene #MSUB -Q normal
25#-Q- irene #MSUB -A ::default_post_project::
26#-Q- irene #MSUB -m store,work,scratch
27#-Q- irene set +x
28#-Q- ada #!/bin/ksh
29#-Q- ada #######################
30#-Q- ada ## ADA         IDRIS ##
31#-Q- ada #######################
32#-Q- ada # @ job_type = mpich
33#-Q- ada # @ requirements = (Feature == "prepost")
34#-Q- ada # Temps Elapsed max. d'une requete hh:mm:ss
35#-Q- ada # @ wall_clock_limit = 4:00:00
36#-Q- ada # Nom du travail LoadLeveler
37#-Q- ada # @ job_name   = METRICS_ORCHIDEE
38#-Q- ada # Fichier de sortie standard du travail
39#-Q- ada # @ output     = $(job_name).$(jobid)
40#-Q- ada # Fichier de sortie d'erreur du travail
41#-Q- ada # @ error      =  $(job_name).$(jobid)
42#-Q- ada # pour recevoir un mail en cas de depassement du temps Elapsed (ou autre pb.)
43#-Q- ada # @ notification = error
44#-Q- ada # @ environment  = $POST_DIR ; $Script_Post_Output ; $SUBMIT_DIR ; $libIGCM ; $DEBUG_debug ; $BigBrother ; $postProcessingStopLevel ; $R_INIT ; $R_BC ; $StandAlone ; $RESOL_ATM ; $RESOL_OCE ; $RESOL_ICE ; $RESOL_MBG ; $RESOL_SRF ; $RESOL_SBG ; $YEARS ; $DIR_OUT ; $MASTER ; $libIGCM_SX ; wall_clock_limit=$(wall_clock_limit)
45#-Q- ada # @ queue
46#-Q- lxiv8 ######################
47#-Q- lxiv8 ## OBELIX      LSCE ##
48#-Q- lxiv8 ######################
49#-Q- lxiv8 #PBS -N METRICS_ORCHIDEE
50#-Q- lxiv8 #PBS -m a
51#-Q- lxiv8 #PBS -j oe
52#-Q- lxiv8 #PBS -q test
53#-Q- lxiv8 #PBS -o METRICS_ORCHIDEE.$$
54#-Q- lxiv8 #PBS -S /bin/ksh
55#-Q- ifort_CICLAD ######################
56#-Q- ifort_CICLAD ##   CICLAD    IPSL ##
57#-Q- ifort_CICLAD ######################
58#-Q- ifort_CICLAD #PBS -N METRICS_ORCHIDEE
59#-Q- ifort_CICLAD #PBS -m a
60#-Q- ifort_CICLAD #PBS -j oe
61#-Q- ifort_CICLAD #PBS -q std
62#-Q- ifort_CICLAD #PBS -S /bin/ksh
63#-Q- default #!/bin/ksh
64#-Q- default ##################
65#-Q- default ## DEFAULT HOST ##
66#-Q- default ##################
67
68#**************************************************************
69# Author: Sebastien Denvil
70# Contact: Sebastien.Denvil__at__ipsl.jussieu.fr
71# $Revision::                                          $ Revision of last commit
72# $Author::                                            $ Author of last commit
73# $Date::                                              $ Date of last commit
74# IPSL (2006)
75#  This software is governed by the CeCILL licence see libIGCM/libIGCM_CeCILL.LIC
76#
77#**************************************************************
78
79#set -eu
80#set -vx
81
82date
83
84#-Q- ada export OMP_NUM_THREADS=1
85
86#D- Task type DO NOT CHANGE (computing, post-processing or checking)
87TaskType=post-processing
88
89######################################################################
90
91. ${libIGCM}/libIGCM_debug/libIGCM_debug.ksh
92. ${libIGCM}/libIGCM_card/libIGCM_card.ksh
93. ${libIGCM}/libIGCM_date/libIGCM_date.ksh
94#-------
95. ${libIGCM}/libIGCM_sys/libIGCM_sys.ksh
96. ${libIGCM}/libIGCM_config/libIGCM_config.ksh
97. ${libIGCM}/libIGCM_comp/libIGCM_comp.ksh
98#-------
99IGCM_sys_MkdirWork ${RUN_DIR_PATH}
100IGCM_sys_Cd ${RUN_DIR_PATH}
101#-------
102( ${DEBUG_debug} ) && IGCM_debug_Check
103( ${DEBUG_debug} ) && IGCM_card_Check
104( ${DEBUG_debug} ) && IGCM_date_Check
105
106######################################################################
107
108#set -vx
109
110# ------------------------------------------------------------------
111# Test if all was right before proceeding further
112# ------------------------------------------------------------------
113IGCM_debug_Verif_Exit
114
115if [ ${StandAlone} = true ] ; then
116    CARD_DIR=${SUBMIT_DIR}
117else
118    CARD_DIR=${RUN_DIR_PATH}
119    IGCM_sys_Get_Master ${SUBMIT_DIR}/config.card ${RUN_DIR_PATH}
120    IGCM_sys_Get_Master ${SUBMIT_DIR}/run.card    ${RUN_DIR_PATH}
121    IGCM_sys_Get_Master ${SUBMIT_DIR}/COMP        ${RUN_DIR_PATH}
122    IGCM_sys_Get_Master ${SUBMIT_DIR}/POST        ${RUN_DIR_PATH}
123fi
124
125#==================================
126# First of all
127#
128# Read libIGCM compatibility version in config.card
129# Read UserChoices section
130# Read Ensemble section
131# Read Post section
132# Define all netcdf output directories
133#==================================
134IGCM_config_CommonConfiguration ${CARD_DIR}/config.card
135
136# ------------------------------------------------------------------
137# Activate BigBrother so as to supervise this job
138# ------------------------------------------------------------------
139IGCM_debug_BigBro_Initialize
140
141#==================================
142# Then set up several directories
143#==================================
144R_OUT_SRF=${R_SAVE}/SRF
145DIR_OUT=${DIR_OUT:=SE}
146RUN_DIR=${RUN_DIR_PATH}
147IGCM_sys_MkdirArchive ${R_FIGR}
148IGCM_sys_MkdirWork ${RUN_DIR}
149IGCM_sys_Cd ${RUN_DIR}
150IGCM_sys_MkdirWork METRICS/SE_${YEARS}
151
152#==================================
153# Get the file
154#==================================
155IGCM_sys_Get ${R_OUT_SRF}/Analyse/${DIR_OUT}/${config_UserChoices_JobName}_SE_${YEARS}_1M_sechiba_history.nc ${RUN_DIR}
156
157#==================================
158# Get the fileCompute gpptot
159#==================================
160IGCM_sys_ncap2 -s 'gpptot = gpp.total($veget)/1000' ${config_UserChoices_JobName}_SE_${YEARS}_1M_sechiba_history.nc tmpout.nc
161IGCM_sys_ncatted -O -a units,gpptot,o,c,"kg m-2 s-1" tmpout.nc
162IGCM_sys_Mv tmpout.nc ${config_UserChoices_JobName}_SE_${YEARS}_1M_sechiba_history.nc
163
164#==================================
165# Group of metrics we will compute
166#==================================
167GroupsOfMetrics='ORCHIDEE_PCMDI'
168MP_Version=v3
169
170#==================================
171# SET UP THE PATH (wont be done in libIGCM_sys because setup_runtime.sh is way too intrusive)
172#==================================
173. ${PCMDI_MP}/work_install_${MP_Version}/PCMDI_METRICS/bin/setup_runtime.sh
174
175for metricsGroupName in ${GroupsOfMetrics} ; do
176
177  #==================================
178  # Appropriate configuration template
179  #==================================
180  IGCM_sys_Cp ${PCMDI_MP}/work_install_${MP_Version}/PCMDI_METRICS/doc/parameter_files/input_parameters_${metricsGroupName}_template.py template.py
181
182  #==================================
183  # Configure template for histmth.nc
184  #==================================
185  IGCM_comp_modifyFile template.py path_and_filename \'./${config_UserChoices_JobName}_SE_${YEARS}_1M_sechiba_history.nc\'
186  IGCM_comp_modifyFile template.py filename \'${config_UserChoices_JobName}_SE_${YEARS}_1M_sechiba_history.nc\'
187  IGCM_comp_modifyFile template.py attributes_provided \'IPSL_Extended\'
188  IGCM_comp_modifyFile template.py Login  \'${LOGIN}\'
189  IGCM_comp_modifyFile template.py model_versions \[\'${config_UserChoices_TagName}\'\]
190  IGCM_comp_modifyFile template.py experiment  \'${config_UserChoices_ExperimentName}\'
191  IGCM_comp_modifyFile template.py realization \'${config_UserChoices_JobName}\'
192  IGCM_comp_modifyFile template.py project_id \'IPSL\-${config_UserChoices_SpaceName}\'
193  IGCM_comp_modifyFile template.py ModelFreeSpace "\"${config_UserChoices_LongName}\""
194  IGCM_comp_modifyFile template.py case_id \'${metricsGroupName}\'
195  IGCM_comp_modifyFile template.py obs_data_path  \'${R_IN}/ReferenceDatasets/climatos\'
196  IGCM_comp_modifyFile template.py metrics_output_path \'${RUN_DIR}/METRICS/SE_${YEARS}\'
197  IGCM_comp_modifyFile template.py model_clims_interpolated_output \'${RUN_DIR}\'
198
199  #==================================
200  # Compute metrics
201  #==================================
202  python ${PCMDI_MP}/work_install_${MP_Version}/PCMDI_METRICS/bin/pcmdi_metrics_driver.py -p template.py
203
204  #==================================
205  # Export metrics to mongoDB system
206  #==================================
207  IGCM_debug_sendAMQP_Metrics METRICS/SE_${YEARS}/${metricsGroupName} ${metricsGroupName}
208
209done
210
211#==================================
212# Save files
213#==================================
214IGCM_sys_Put_Dir METRICS ${R_FIGR}
215IGCM_sys_Rm -Rf METRICS
216IGCM_sys_Rm ${config_UserChoices_JobName}_SE_${YEARS}_1M_histmth.nc
217
218# Clean RUN_DIR_PATH (necessary for cesium and titane only)
219IGCM_sys_RmRunDir -Rf ${RUN_DIR_PATH}
220
221# ------------------------------------------------------------------
222# Finalize BigBrother to inform that the jobs end
223# ------------------------------------------------------------------
224IGCM_debug_BigBro_Finalize
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