source: trunk/libIGCM/AA_monitoring @ 729

#-Q- cesium #!/bin/ksh
#-Q- cesium ######################
#-Q- cesium ## CESIUM   CEA ##
#-Q- cesium ######################
#-Q- cesium #MSUB -r MONITORING     # Nom du job                
#-Q- cesium #MSUB -N 1              # Reservation du noeud
#-Q- cesium #MSUB -n 1              # Reservation du processus
#-Q- cesium #MSUB -T 86400          # Limite de temps elapsed du job
#-Q- cesium #MSUB -E "-j o"
#-Q- cesium #MSUB -E "-S /bin/ksh"
#-Q- curie ######################
#-Q- curie ## CURIE   TGCC/CEA ##
#-Q- curie ######################
#-Q- curie #MSUB -r MONITORING     # Nom du job               
#-Q- curie #MSUB -eo
#-Q- curie #MSUB -n 1              # Reservation du processus
#-Q- curie #MSUB -T 86400          # Limite de temps elapsed du job
#-Q- curie #MSUB -E '--no-requeue' 
#-Q- curie #MSUB -q large
#-Q- curie #MSUB -Q normal
#-Q- curie set +x
#-Q- platine #!/usr/bin/ksh
#-Q- platine ##################
#-Q- platine ## PLATINE   CEA ##
#-Q- platine ##################
#-Q- platine #BSUB -J MONITORING             # Nom du job
#-Q- platine #BSUB -N                        # message a la fin du job
#-Q- platine #BSUB -n 1                      # reservation des processeurs pour le job
#-Q- platine #BSUB -W 1:00                   # Limite temps
#-Q- platine #BSUB -q post              # Passage en queue post
#-Q- platine #BSUB -L /bin/ksh
#-Q- sx8brodie #!/bin/ksh
#-Q- sx8brodie #######################
#-Q- sx8brodie ## SX8BRODIE   IDRIS ##
#-Q- sx8brodie #######################
#-Q- sx8brodie # Temps Elapsed max. d'une requete hh:mm:ss
#-Q- sx8brodie # @ wall_clock_limit = 1:00:00
#-Q- sx8brodie # Nom du travail LoadLeveler
#-Q- sx8brodie # @ job_name   = MONITORING
#-Q- sx8brodie # Fichier de sortie standard du travail       
#-Q- sx8brodie # @ output     = $(job_name).$(jobid)
#-Q- sx8brodie # Fichier de sortie d'erreur du travail
#-Q- sx8brodie # @ error      =  $(job_name).$(jobid)
#-Q- sx8brodie # pour recevoir un mail en cas de depassement du temps Elapsed (ou autre pb.)
#-Q- sx8brodie # @ notification = error
#-Q- sx8brodie # @ environment  = $POST_DIR ; $SUBMIT_DIR ; $libIGCM ;  $libIGCM_SX ; $R_INIT ; $R_BC ; $StandAlone ; $RESOL_ATM ; $RESOL_OCE ; $RESOL_ICE ; $RESOL_MBG ; $RESOL_SRF ; $R_SAVE ; $config_UserChoices_JobName ; $config_UserChoices_TagName ; $YEARS ; $MASTER
#-Q- sx8brodie # @ queue
#-Q- aix6 #!/bin/ksh
#-Q- aix6 #######################
#-Q- aix6 ##   VARGAS   IDRIS  ##
#-Q- aix6 #######################
#-Q- aix6 # Temps Elapsed max. d'une requete hh:mm:ss
#-Q- aix6 # @ wall_clock_limit = 1:00:00
#-Q- aix6 # Nom du travail LoadLeveler
#-Q- aix6 # @ job_name   = MONITORING
#-Q- aix6 # Fichier de sortie standard du travail       
#-Q- aix6 # @ output     = $(job_name).$(jobid)
#-Q- aix6 # Fichier de sortie d'erreur du travail
#-Q- aix6 # @ error      =  $(job_name).$(jobid)
#-Q- aix6 # pour recevoir un mail en cas de depassement du temps Elapsed (ou autre pb.)
#-Q- aix6 # @ notification = error
#-Q- aix6 # @ environment  = $POST_DIR ; $SUBMIT_DIR ; $libIGCM ; $libIGCM_SX ; $R_INIT ; $R_BC ; $StandAlone ; $RESOL_ATM ; $RESOL_OCE ; $RESOL_ICE ; $RESOL_MBG ; $RESOL_SRF ; $R_SAVE ; $config_UserChoices_JobName ; $config_UserChoices_TagName ; $YEARS ; $MASTER
#-Q- aix6 # @ queue
#-Q- ulam #!/bin/ksh
#-Q- ulam #######################
#-Q- ulam ##   ULAM   IDRIS  ##
#-Q- ulam #######################
#-Q- ulam # Temps Elapsed max. d'une requete hh:mm:ss
#-Q- ulam # @ wall_clock_limit = 1:00:00
#-Q- ulam # Nom du travail LoadLeveler
#-Q- ulam # @ job_name   = MONITORING
#-Q- ulam # Fichier de sortie standard du travail       
#-Q- ulam # @ output     = $(job_name).$(jobid)
#-Q- ulam # Fichier de sortie d'erreur du travail
#-Q- ulam # @ error      =  $(job_name).$(jobid)
#-Q- ulam # pour recevoir un mail en cas de depassement du temps Elapsed (ou autre pb.)
#-Q- ulam # @ notification = error
#-Q- ulam # @ environment  = $POST_DIR ; $SUBMIT_DIR ; $libIGCM ; $libIGCM_SX ; $R_INIT ; $R_BC ; $StandAlone ; $RESOL_ATM ; $RESOL_OCE ; $RESOL_ICE ; $RESOL_MBG ; $RESOL_SRF ; $R_SAVE ; $config_UserChoices_JobName ; $config_UserChoices_TagName ; $YEARS ; $MASTER
#-Q- ulam # @ queue
#-Q- sx8mercure #!/bin/ksh
#-Q- sx8mercure ######################
#-Q- sx8mercure ## SX8MERCURE   CEA ##
#-Q- sx8mercure ######################
#-Q- sx8mercure #PBS -N  MONITORING          # Nom du job
#-Q- sx8mercure #PBS -j o                    # regroupement des stdout et stderr
#-Q- sx8mercure #PBS -S /usr/bin/ksh         # shell de soumission
#-Q- sx8mercure #PBS -l memsz_job=1gb        # Limite memoire a 1 Go
#-Q- sx8mercure #PBS -l cputim_job=1:00:00   # Limite temps a 2 heures
#-Q- sx8mercure #PBS -q scalaire
#-Q- sx8mercure #PBS -r n
#-Q- sx9mercure #!/bin/ksh
#-Q- sx9mercure ######################
#-Q- sx9mercure ## SX9MERCURE  CCRT ##
#-Q- sx9mercure ######################
#-Q- sx9mercure #PBS -N  MONITORING          # Nom du job
#-Q- sx9mercure #PBS -j o                    # regroupement des stdout et stderr
#-Q- sx9mercure #PBS -S /usr/bin/ksh         # shell de soumission
#-Q- sx9mercure #PBS -l memsz_job=1gb        # Limite memoire a 1 Go
#-Q- sx9mercure #PBS -l elapstim_req=1:00:00   # Limite temps a 2 heures
#-Q- sx9mercure #PBS -q scalaire
#-Q- sx9mercure #PBS -r n
#-Q- titane #!/bin/ksh
#-Q- titane ######################
#-Q- titane ## TITANE   CEA ##
#-Q- titane ######################
#-Q- titane #MSUB -r MONITORING     # Nom du job                
#-Q- titane #MSUB -eo
#-Q- titane #MSUB -n 1              # Reservation du processus
#-Q- titane #MSUB -T 86400          # Limite de temps elapsed du job
#-Q- titane #MSUB -q mono
#-Q- titane #MSUB -E '-rn'
#-Q- lxiv8 ######################
#-Q- lxiv8 ## OBELIX      LSCE ##
#-Q- lxiv8 ######################
#-Q- lxiv8 #PBS -N MONITORING
#-Q- lxiv8 #PBS -m a
#-Q- lxiv8 #PBS -j oe
#-Q- lxiv8 #PBS -q medium
#-Q- lxiv8 #PBS -o MONITORING.$$
#-Q- lxiv8 #PBS -S /bin/ksh
#-Q- default #!/bin/ksh
#-Q- default ##################
#-Q- default ## DEFAULT HOST ##
#-Q- default ##################

#**************************************************************
# Author: Sebastien Denvil
# Contact: Sebastien.Denvil__at__ipsl.jussieu.fr
# $Revision::                                          $ Revision of last commit
# $Author::                                            $ Author of last commit
# $Date::                                              $ Date of last commit
# IPSL (2006)
#  This software is governed by the CeCILL licence see libIGCM/libIGCM_CeCILL.LIC
#
#**************************************************************

#set -eu
#set -vx

date

#-Q- sx8brodie export OMP_NUM_THREADS=1
#-Q- aix6 export OMP_NUM_THREADS=1
#-Q- ulam export OMP_NUM_THREADS=1

#D- Task type (computing or post-processing)
TaskType=post-processing

########################################################################

#D- Flag to determine if this job in a standalone mode
#D- Default : value from AA_job if any
StandAlone=${StandAlone:=true}

#D- Path to libIGCM
#D- Default : value from AA_job if any
# WARNING For StandAlone use : To run this script on some machine (ulam and cesium)
# WARNING you must check MirrorlibIGCM variable in sys library.
# WARNING If this variable is true, you must use libIGCM_POST path instead
# WARNING of your running libIGCM directory.
libIGCM=${libIGCM:=::modipsl::/libIGCM}

#D- Increased verbosity (1, 2, 3)
#D- Default : value from AA_job if any
Verbosity=${Verbosity:=3}

#D- Low level debug : to bypass lib test checks and stack construction
#D- Default : value from AA_job if any
DEBUG_debug=${DEBUG_debug:=false}

#D- TEMPORARY Flag to determine atmospheric resolution
#D- Default : value from atmospheric driver if any
RESOL_ATM=${RESOL_ATM:=ALL}

#D- Flag to determine surface resolution
#D- Default : value from surface driver if any
RESOL_SRF=${RESOL_SRF:=ALL}

#D- Flag to determine surface resolution
#D- Default : value from surface driver if any
RESOL_SBG=${RESOL_SBG:=ALL}

#D- TEMPORARY Flag to determine ocean resolution
#D- Default : value from ocean driver if any
RESOL_OCE=${RESOL_OCE:=ORCA2}

#D- TEMPORARY Flag to determine ice resolution
#D- Default : value from ice driver if any
RESOL_ICE=${RESOL_ICE:=ORCA2}

#D- TEMPORARY Flag to determine marine biogeochemistry resolution
#D- Default : value from ice driver if any
RESOL_MBG=${RESOL_MBG:=ORCA2}

######################################################################

. ${libIGCM}/libIGCM_debug/libIGCM_debug.ksh
      ( ${DEBUG_debug} ) && IGCM_debug_Check
. ${libIGCM}/libIGCM_card/libIGCM_card.ksh
     ( ${DEBUG_debug} ) && IGCM_card_Check
. ${libIGCM}/libIGCM_date/libIGCM_date.ksh
     ( ${DEBUG_debug} ) && IGCM_date_Check
#-------
. ${libIGCM}/libIGCM_sys/libIGCM_sys.ksh

######################################################################

#set -vx 

#===========================================
RUN_DIR=${RUN_DIR_PATH}
IGCM_sys_MkdirWork ${RUN_DIR}
IGCM_sys_Cd ${RUN_DIR}

# ------------------------------------------------------------------
# Test if all was right before proceeding further
# ------------------------------------------------------------------
IGCM_debug_Verif_Exit_Post

if [ ${StandAlone} = true ] ; then
    CARD_DIR=${SUBMIT_DIR}
else
    CARD_DIR=${RUN_DIR}
    IGCM_sys_Get_Master ${SUBMIT_DIR}/config.card ${RUN_DIR_PATH}
    IGCM_sys_Get_Master ${SUBMIT_DIR}/run.card    ${RUN_DIR_PATH}
    IGCM_sys_Get_Master ${SUBMIT_DIR}/COMP        ${RUN_DIR_PATH}
    IGCM_sys_Get_Master ${SUBMIT_DIR}/POST        ${RUN_DIR_PATH}
fi

#==================================
# First of all
#
# Read libIGCM compatibility version in config.card
# Read UserChoices section
# Read Ensemble section
# Read Post section
# Define all netcdf output directories
#==================================
IGCM_config_CommonConfiguration ${CARD_DIR}/config.card

#==================================
# Read ListOfComponents section:
IGCM_card_DefineArrayFromSection ${CARD_DIR}/config.card ListOfComponents

# Create R_FIGR that has been defined by IGCM_config_CommonConfiguration
IGCM_sys_MkdirArchive ${R_FIGR}
#
IGCM_sys_TestDirArchive ${R_FIGR}/MONITORING
if [ $? = 0 ] ; then
    IGCM_debug_Print 1 "Get MONITORING directory from archive"
    IGCM_sys_Get_Dir ${R_FIGR}/MONITORING ${RUN_DIR}
else
    IGCM_debug_Print 1 "MONITORING first pass. Nothing has been done before"
fi
# --------------------------------------------
# Insert your commands between III...III lines 
# and precise produced directories to save
# IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII

for comp in ${config_ListOfComponents[*]} ; do
    IGCM_debug_Print 1 "################## Component: ${comp} ######################"
    liste_file_monitoring=""
    IGCM_card_DefineArrayFromOption ${CARD_DIR}/config.card ListOfComponents ${comp}
    eval compname=\${config_ListOfComponents_${comp}[0]}                > /dev/null 2>&1

    PATH_monitoring_file=""
    eval monitoring_file=monitoring01_${compname}_\${RESOL_${comp}}.cfg > /dev/null 2>&1
    if [[ -d ${CARD_DIR}/POST && -f ${CARD_DIR}/POST/monitoring01_${compname}.cfg ]] ; then
        PATH_monitoring_file=${CARD_DIR}/POST/monitoring01_${compname}.cfg
    elif [ -f ${FER_ATLAS}/${monitoring_file} ] ; then
        PATH_monitoring_file=${FER_ATLAS}/${monitoring_file}
    else
        IGCM_debug_Print 1 "No monitoring file found for this component. Was expecting ${monitoring_file}"
        IGCM_debug_Print 1 "Step to next component"
        continue
    fi
    #
    if [ X${PATH_monitoring_file} != X"" ] ; then
        IGCM_debug_Print 1 "Monitoring file used : ${PATH_monitoring_file}"
        IGCM_debug_Print 1 "Determine which files we need."
        . monitoring01 -l2 --listcommand 'IGCM_sys_RshArchive ls' ${PATH_monitoring_file} ${R_SAVE}/${comp}/Analyse/TS_MO
        liste_file_monitoring=$( . monitoring01 -q -l2 --listcommand 'IGCM_sys_RshArchive ls' ${PATH_monitoring_file} ${R_SAVE}/${comp}/Analyse/TS_MO )
    fi
    #
    if [ ! "X${liste_file_monitoring}" = X ] ; then
        IGCM_sys_Get /l liste_file_monitoring ${RUN_DIR}
        IGCM_debug_Print 1 "monitoring01 -c ${CARD_DIR} -p ${comp} --time -t \"${config_UserChoices_JobName} monitoring\" -o ${RUN_DIR}/MONITORING ${PATH_monitoring_file} ."
        IGCM_debug_Print 1 "monitoring01 starts ................................................."
        monitoring01 -c ${CARD_DIR} -p ${comp} --time -t "${config_UserChoices_JobName} monitoring" -o ${RUN_DIR}/MONITORING ${PATH_monitoring_file} .
    else
        IGCM_debug_Print 1 "No time series detected by this command :"
        IGCM_debug_Print 1 "monitoring01 -l2 --listcommand 'IGCM_sys_RshArchive ls' ${PATH_monitoring_file} ${R_SAVE}/${comp}/Analyse/TS_MO"
        . monitoring01 -l2 --listcommand 'IGCM_sys_RshArchive ls' ${PATH_monitoring_file} ${R_SAVE}/${comp}/Analyse/TS_MO
    fi
    #
done

# IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII

# Save files
IGCM_sys_Put_Dir MONITORING ${R_FIGR}

# Dods copy
IGCM_sys_Put_Dods MONITORING

# Clean RUN_DIR_PATH (necessary for cesium and titane only)
IGCM_sys_RmRunDir -Rf ${RUN_DIR_PATH}