source: trunk/libIGCM/AA_pack_debug @ 553

Last change on this file since 553 was 547, checked in by sdipsl, 12 years ago
  • Add pack_restart and pack_debug. Adapted from A. Cozic script. Standalone only for now and for testing purpose only. No warranty.
  • Be warn it could delete some of your files.
  • Property svn:keywords set to Revision Author Date
File size: 14.3 KB
Line 
1#-Q- cesium #!/bin/ksh
2#-Q- cesium ######################
3#-Q- cesium ## CESIUM   CEA ##
4#-Q- cesium ######################
5#-Q- cesium #MSUB -r PACKDEBUG    # Nom du job               
6#-Q- cesium #MSUB -N 1              # Reservation du noeud
7#-Q- cesium #MSUB -n 1              # Reservation du processus
8#-Q- cesium #MSUB -T 86400          # Limite de temps elapsed du job
9#-Q- cesium #MSUB -E "-j o"
10#-Q- cesium #MSUB -E "-S /bin/ksh"
11#-Q- platine #!/usr/bin/ksh
12#-Q- platine ###################
13#-Q- platine ## PLATINE   CEA ##
14#-Q- platine ###################
15#-Q- platine #BSUB -J PACKDEBUG            # Nom du job
16#-Q- platine #BSUB -N                        # message a la fin du job
17#-Q- platine #BSUB -n 1                      # reservation des processeurs pour le job
18#-Q- platine #BSUB -W 4:00                   # Limite temps
19#-Q- platine #BSUB -q post                   # Passage en queue post
20#-Q- platine #BSUB -L /bin/ksh
21#-Q- sx8brodie #!/bin/ksh
22#-Q- sx8brodie #######################
23#-Q- sx8brodie ## SX8BRODIE   IDRIS ##
24#-Q- sx8brodie #######################
25#-Q- sx8brodie # Temps Elapsed max. d'une requete hh:mm:ss
26#-Q- sx8brodie # @ wall_clock_limit = 10:00:00
27#-Q- sx8brodie # Nom du travail LoadLeveler
28#-Q- sx8brodie # @ job_name   = PACKDEBUG
29#-Q- sx8brodie # Fichier de sortie standard du travail       
30#-Q- sx8brodie # @ output     = $(job_name).$(jobid)
31#-Q- sx8brodie # Fichier de sortie d'erreur du travail
32#-Q- sx8brodie # @ error      =  $(job_name).$(jobid)
33#-Q- sx8brodie # pour recevoir un mail en cas de depassement du temps Elapsed (ou autre pb.)
34#-Q- sx8brodie # @ notification = error
35#-Q- sx8brodie # @ environment  = $DEBUG_debug ; $MODIPSL ; $libIGCM ; $libIGCM_SX ; $SUBMIT_DIR ; $DateBegin ; $PeriodDateBegin ; $PeriodDateEnd ; $StandAlone ; $MASTER
36#-Q- sx8brodie # @ queue
37#-Q- aix6 #!/bin/ksh
38#-Q- aix6 #######################
39#-Q- aix6 ##   VARGAS   IDRIS  ##
40#-Q- aix6 #######################
41#-Q- aix6 # Temps Elapsed max. d'une requete hh:mm:ss
42#-Q- aix6 # @ wall_clock_limit = 10:00:00
43#-Q- aix6 # Nom du travail LoadLeveler
44#-Q- aix6 # @ job_name   = PACKDEBUG
45#-Q- aix6 # Fichier de sortie standard du travail
46#-Q- aix6 # @ output     = $(job_name).$(jobid)
47#-Q- aix6 # Fichier de sortie d'erreur du travail
48#-Q- aix6 # @ error      =  $(job_name).$(jobid)
49#-Q- aix6 # pour recevoir un mail en cas de depassement du temps Elapsed (ou autre pb.)
50#-Q- aix6 # @ notification = error
51#-Q- aix6 # @ environment  = $DEBUG_debug ; $MODIPSL ; $libIGCM ; $libIGCM_SX ; $SUBMIT_DIR ; $DateBegin ; $PeriodDateBegin ; $PeriodDateEnd ; $StandAlone ; $MASTER
52#-Q- aix6 # @ queue
53#-Q- ulam #!/bin/ksh
54#-Q- ulam #######################
55#-Q- ulam ##   VARGAS   IDRIS  ##
56#-Q- ulam #######################
57#-Q- ulam # Temps Elapsed max. d'une requete hh:mm:ss
58#-Q- ulam # @ wall_clock_limit = 10:00:00
59#-Q- ulam # Nom du travail LoadLeveler
60#-Q- ulam # @ job_name   = PACKDEBUG
61#-Q- ulam # Fichier de sortie standard du travail
62#-Q- ulam # @ output     = $(job_name).$(jobid)
63#-Q- ulam # Fichier de sortie d'erreur du travail
64#-Q- ulam # @ error      =  $(job_name).$(jobid)
65#-Q- ulam # pour recevoir un mail en cas de depassement du temps Elapsed (ou autre pb.)
66#-Q- ulam # @ notification = error
67#-Q- ulam # @ environment  = $DEBUG_debug ; $MODIPSL ; $libIGCM ; $libIGCM_SX ; $SUBMIT_DIR ; $DateBegin ; $PeriodDateBegin ; $PeriodDateEnd ; $StandAlone ; $MASTER
68#-Q- ulam # @ queue
69#-Q- sx8mercure #!/bin/ksh
70#-Q- sx8mercure ######################
71#-Q- sx8mercure ## SX8MERCURE   CEA ##
72#-Q- sx8mercure ######################
73#-Q- sx8mercure #PBS -N PACKDEBUG          # Nom du job
74#-Q- sx8mercure #PBS -j o                    # regroupement des stdout et stderr
75#-Q- sx8mercure #PBS -S /usr/bin/ksh         # shell de soumission
76#-Q- sx8mercure #PBS -l memsz_job=1gb        # Limite memoire a 1 Go
77#-Q- sx8mercure #PBS -l cputim_job=24:00:00  # Limite temps a 1 heures
78#-Q- sx8mercure #PBS -q scalaire
79#-Q- sx9mercure #!/bin/ksh
80#-Q- sx9mercure ######################
81#-Q- sx9mercure ## CESIUM   CEA ##
82#-Q- sx9mercure ######################
83#-Q- sx9mercure #MSUB -r PACKDEBUG    # Nom du job               
84#-Q- sx9mercure #MSUB -N 1              # Reservation du noeud
85#-Q- sx9mercure #MSUB -n 1              # Reservation du processus
86#-Q- sx9mercure #MSUB -T 86400          # Limite de temps elapsed du job
87#-Q- sx9mercure #MSUB -E "-j o"
88#-Q- sx9mercure #MSUB -E "-S /bin/ksh"
89#-Q- titane #!/bin/ksh
90#-Q- titane ######################
91#-Q- titane ## TITANE   CEA     ##
92#-Q- titane ######################
93#-Q- titane #MSUB -r PACKDEBUG    # Nom du job               
94#-Q- titane #MSUB -eo
95#-Q- titane #MSUB -n 1              # Reservation du processus
96#-Q- titane #MSUB -T 86400          # Limite de temps elapsed du job
97#-Q- titane #MSUB -q mono
98#-Q- lxiv8 ######################
99#-Q- lxiv8 ## OBELIX      LSCE ##
100#-Q- lxiv8 ######################
101#-Q- lxiv8 #PBS -N PACKDEBUG
102#-Q- lxiv8 #PBS -m a
103#-Q- lxiv8 #PBS -j oe
104#-Q- lxiv8 #PBS -q medium
105#-Q- lxiv8 #PBS -o PACKDEBUG.$$
106#-Q- lxiv8 #PBS -S /bin/ksh
107#-Q- default #!/bin/ksh
108#-Q- default ##################
109#-Q- default ## DEFAULT HOST ##
110#-Q- default ##################
111
112#**************************************************************
113# Author: Sebastien Denvil
114# Contact: Sebastien.Denvil__at__ipsl.jussieu.fr
115# $Revision::                                          $ Revision of last commit
116# $Author::                                            $ Author of last commit
117# $Date::                                              $ Date of last commit
118# IPSL (2006)
119#  This software is governed by the CeCILL licence see libIGCM/libIGCM_CeCILL.LIC
120#
121#**************************************************************
122
123#set -eu
124#set -vx
125
126date
127
128########################################################################
129
130#D- Flag to determine if this job in a standalone mode
131#D- Default : value from AA_job if any
132StandAlone=${StandAlone:=true}
133
134#D- Flag to determine begin date for restart pack
135#D- Default : value from AA_job if any
136DateBegin=20000101
137
138#D- Flag to determine end date for restart pack
139#D- Default : value from AA_job if any
140DateEnd=20691231
141
142#D- Flag to determine pack period
143#D- Default : value from AA_job if any
144period_pack=${period_pack:=10Y}
145
146SUBMIT_DIR=${PWD}
147
148RUN_DIR_PATH=/scratch/cont003/p86denv/Pack_Test
149
150#-D- $hostname of the MASTER job when SUBMIT_DIR is not visible on postprocessing computer.
151MASTER=${MASTER:=mercure|titane|brodie|vargas}
152
153#D- Low level debug : to bypass lib test checks and stack construction
154#D- Default : value from AA_job if any
155libIGCM=${libIGCM:=/work/cont003/p86denv/PARA_XEON_CM5_IPSLCM5A.16122011_39L/modipsl/libIGCM}
156
157# WARNING for StandAlone use : To run this script on some machine,
158# you must check MirrorlibIGCM variable in sys library.
159# If this variable is true, you must use libIGCM_POST path instead
160# of your running libIGCM directory.
161
162#D- Increased verbosity (1, 2, 3)
163#D- Default : value from AA_job if any
164Verbosity=${Verbosity:=3}
165
166#D- Low level debug : to bypass lib test checks and stack construction
167#D- Default : value from AA_job if any
168DEBUG_debug=${DEBUG_debug:=false}
169
170#on veut archiver les fichiers restart
171#Dans le cadre du demenagement ils seront renommes
172#ATM/Restart/****.nc
173#OCE/Restart/****.nc
174#...
175#sous la forme
176#RESTART/ATM_****.nc
177#RESTART/OCE_****.nc
178#Attention de bien conserver les dates d'origines
179#
180#Dans le cadre de la production nouvelle chaine
181#ils auront directement le bon nom
182#
183#On veut egalement que l'archive soit par periode de temps
184# cette periode est definie par la taille du pack donc connue
185# en entree du script (1M, 1Y, 5Y, 10Y etc...)
186#
187# $1= PATH/config_card d'une simulation avec
188# TagName/JobName/ExperimentName/SpaceName/DateBegin/DateEnd/PATH_SIMUL
189# $2=period_pack en M/m ou Y/y
190
191########################################################################
192
193. ${libIGCM}/libIGCM_debug/libIGCM_debug.ksh
194( ${DEBUG_debug} ) && IGCM_debug_Check
195. ${libIGCM}/libIGCM_card/libIGCM_card.ksh
196( ${DEBUG_debug} ) && IGCM_card_Check
197. ${libIGCM}/libIGCM_date/libIGCM_date.ksh
198( ${DEBUG_debug} ) && IGCM_date_Check
199#-------
200. ${libIGCM}/libIGCM_sys/libIGCM_sys.ksh
201. ${libIGCM}/libIGCM_post/libIGCM_post.ksh
202
203########################################################################
204
205#set -vx
206
207RUN_DIR=${RUN_DIR_PATH}
208IGCM_sys_MkdirWork ${RUN_DIR}
209IGCM_sys_Cd ${RUN_DIR}
210
211# ------------------------------------------------------------------
212# Test if all was right before proceeding further
213# ------------------------------------------------------------------
214IGCM_debug_Verif_Exit_Post
215
216if [ ${StandAlone} = true ] ; then
217    CARD_DIR=${SUBMIT_DIR}
218else
219    CARD_DIR=${RUN_DIR_PATH}/$( basename ${SUBMIT_DIR} )
220    IGCM_sys_Get_Master ${SUBMIT_DIR} ${RUN_DIR_PATH}
221fi
222
223#
224# First of all
225#
226#### 0- lecture de config.card
227#### on veut les renseignements suivants :
228#### JobName, PATH_SIMUL, DateBegin et DateEnd
229
230IGCM_card_DefineArrayFromSection     ${CARD_DIR}/config.card UserChoices
231typeset option
232for option in ${config_UserChoices[*]} ; do
233  IGCM_card_DefineVariableFromOption ${CARD_DIR}/config.card UserChoices ${option}
234done
235#
236echo
237IGCM_debug_Print 1 "DefineArrayFromOption  : config_UserChoices"
238IGCM_debug_PrintVariables 3 config_UserChoices_JobName
239IGCM_debug_PrintVariables 3 config_UserChoices_LongName
240IGCM_debug_PrintVariables 3 config_UserChoices_TagName
241IGCM_debug_PrintVariables 3 config_UserChoices_SpaceName
242IGCM_debug_PrintVariables 3 config_UserChoices_ExperimentName
243IGCM_debug_PrintVariables 3 config_UserChoices_CalendarType
244IGCM_debug_PrintVariables 3 config_UserChoices_DateBegin
245IGCM_debug_PrintVariables 3 config_UserChoices_DateEnd
246IGCM_debug_PrintVariables 3 config_UserChoices_PeriodLength
247echo
248
249#====================================================
250#R_SAVE : Job output storage directory
251#R_BUFR : Job output buffered directory
252
253if ( [ ! X${config_UserChoices_SpaceName} = X ] && [ ! X${config_UserChoices_ExperimentName} = X ] ) ; then
254  FreeName=$( echo ${config_UserChoices_JobName} | sed 's/.*_//' )
255  R_SAVE=${R_OUT}/${config_UserChoices_TagName}/${config_UserChoices_SpaceName}/${config_UserChoices_ExperimentName}/${FreeName}
256  R_BUFR=${R_BUF}/${config_UserChoices_TagName}/${config_UserChoices_SpaceName}/${config_UserChoices_ExperimentName}/${FreeName}
257else
258  R_SAVE=${R_OUT}/${config_UserChoices_TagName}/${config_UserChoices_JobName}
259  R_BUFR=${R_BUF}/${config_UserChoices_TagName}/${config_UserChoices_JobName}
260fi
261IGCM_sys_TestDirArchive ${R_SAVE}
262[ $? != 0 ] && IGCM_debug_Exit "IGCM_sys_TestDirArchive"
263
264#### Preparation de l'environnement
265# repertoire dans lequel seront crees les archives
266#STORE_DEBUG=${R_SAVE}/DEBUG
267#IGCM_sys_MkdirArchive ${STORE_DEBUG}
268
269STORE_DEBUG=/scratch/cont003/p86denv/Pack_Test/DEBUG
270mkdir -p ${STORE_DEBUG}
271
272#### 0- lecture de config.card
273#### on veut les renseignements suivants :
274#### JobName, PATH_SIMUL, DateBegin et DateEnd
275
276JobName=${config_UserChoices_JobName}
277#DateBegin=$( IGCM_date_ConvertFormatToGregorian ${config_UserChoices_DateBegin} )
278#DateEnd=$(   IGCM_date_ConvertFormatToGregorian ${config_UserChoices_DateEnd}   )
279PATH_SIMUL=${R_BUFR}
280echo $JobName $PATH_SIMUL $DateBegin $DateEnd
281
282#### 1- renommer les fichiers ######
283#cd ${STORE_DEBUG}
284#rm -rf *
285
286# On les copie sur le scratchdir en changeant le nom et conservant la date
287# Clear txt file lists
288rm -f ${RUN_DIR}/liste_debug_files.txt
289rm -f ${RUN_DIR}/new_liste_debug_files.txt
290rm -f ${RUN_DIR}/liste_pack_*.txt
291
292# Create sorted debug list to work with
293find ${PATH_SIMUL}/*/Debug -type f | sort >> ${RUN_DIR}/liste_debug_files.txt
294
295###cat  ${RUN_DIR}/liste_debug_files.txt | xargs dmget
296
297# Rename debug files we will work with
298#gawk -F/ '{dest_name=$(NF-2)("_") $(NF); system("cp --preserve " $0 " "dest_name)}' ${RUN_DIR}/liste_debug_files.txt
299gawk -F/ '{dest_name=$(NF-2)("_") $(NF); system("ln -s " $0 " "dest_name)}' ${RUN_DIR}/liste_debug_files.txt
300
301# List renamed debug files
302ls -l ${RUN_DIR}/???_*${JobName}* > ${RUN_DIR}/new_liste_debug_files.txt
303
304### 2- creer les listes de fichiers par periode ####
305### 2.1- dechiffrer period_pack et le separer en year et month ###
306case ${period_pack} in
307*Y|*y) 
308  periodpackinyear=$( echo ${period_pack} | sed -e 's/[yY]//' ) 
309  periodpackinmonth=0
310  ;;
311
312*M|*m) 
313  periodpackinyear=0
314  periodpackinmonth=$( echo ${period_pack} | sed -e 's/[mM]//' ) 
315  ;;
316
317*)
318  echo "period_pack doit etre en mois ou annees"
319  IGCM_debug_Exit "period pack unit"
320  ;;
321
322esac
323
324### 2.2- extraire l'annee et le mois de DateBegin ###
325date_begin=${DateBegin}
326date_end=${DateEnd}
327
328IGCM_date_GetYearMonth ${date_begin} year_begin month_begin
329IGCM_date_GetYearMonth ${date_end}   year_end   month_end
330
331# ------------------------------------------------------------------
332# Test if all was right before proceeding further
333# ------------------------------------------------------------------
334IGCM_debug_Verif_Exit_Post
335
336### 2.3- creation des listes ###
337date_begin_pack=${date_begin}
338month_begin_pack=${month_begin}
339year_begin_pack=${year_begin}
340
341date_end_simulation=${date_end}
342
343number_pack=1
344
345IGCM_debug_PrintVariables 3 date_begin_pack
346IGCM_debug_PrintVariables 3 date_end_simulation
347
348while [ ${date_begin_pack} -le ${date_end_simulation} ] ; do
349
350  IGCM_debug_PrintVariables 3 number_pack
351
352  (( month_end_pack = month_begin_pack + periodpackinmonth ))
353  (( add_year = ${month_end_pack} / 13 ))
354  if [ ${month_end_pack} -ge 13 ] ; then 
355    (( month_end_pack = ${month_end_pack} % 12 ))
356  fi 
357
358  (( year_end_pack = year_begin_pack + periodpackinyear + add_year ))
359
360  date_end_pack=${year_end_pack}$( printf "%02i\n" ${month_end_pack} )01
361
362  for file in $( gawk '{print $9}' ${RUN_DIR}/new_liste_debug_files.txt ); do
363    extract_date_file=$( echo ${file}  | sed -e "s/.*${JobName}_[0-9]*_//" )
364    date_file=$( echo ${extract_date_file} | sed 's/\([0-9]\{8\}\)_.*$/\1/g' )
365#   echo pack n°${number_pack}  ${date_file} ${date_begin_pack} ${date_end_pack}
366    if [ ${date_file} -lt ${date_end_pack} ] && [ ${date_file} -ge ${date_begin_pack} ] ; then
367        echo $( basename ${file} ) >> ${RUN_DIR}/liste_pack_${number_pack}.txt
368#    elif [ ${date_file} -ge ${date_end_pack} ] ; then
369#      break
370    fi
371  done
372
373  month_begin_pack=${month_end_pack}
374  year_begin_pack=${year_end_pack}
375  date_begin_pack=${year_begin_pack}$( printf "%02i\n" ${month_begin_pack} )01
376
377  tar -cvf ${STORE_DEBUG}/debug_pack_${number_pack}.tar --dereference --files-from ${RUN_DIR}/liste_pack_${number_pack}.txt
378  cat  ${RUN_DIR}/liste_pack_${number_pack}.txt | xargs rm
379  mv ${RUN_DIR}/liste_pack_${number_pack}.txt ${STORE_DEBUG}
380
381  (( number_pack = number_pack + 1 ))
382
383done
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