source: trunk/libIGCM/AA_pack_debug @ 658

Last change on this file since 658 was 658, checked in by labetoulle, 12 years ago

Add Ensemble functionality to libIGCM - First step :
modify output directories according to an option in section [Ensemble]
in config.card (modification of config.card yet to be done).
  • Property svn:keywords set to Revision Author Date
File size: 16.0 KB
Line 
1#-Q- cesium #!/bin/ksh
2#-Q- cesium ######################
3#-Q- cesium ## CESIUM   CEA ##
4#-Q- cesium ######################
5#-Q- cesium #MSUB -r PACKDEBUG    # Nom du job
6#-Q- cesium #MSUB -N 1              # Reservation du noeud
7#-Q- cesium #MSUB -n 1              # Reservation du processus
8#-Q- cesium #MSUB -T 86400          # Limite de temps elapsed du job
9#-Q- cesium #MSUB -E "-j o"
10#-Q- cesium #MSUB -E "-S /bin/ksh"
11#-Q- curie ######################
12#-Q- curie ## CURIE   TGCC/CEA ##
13#-Q- curie ######################
14#-Q- curie #MSUB -r PACKDEBUG      # Nom du job               
15#-Q- curie #MSUB -eo
16#-Q- curie #MSUB -n 1              # Reservation du processus
17#-Q- curie #MSUB -T 86400          # Limite de temps elapsed du job
18#-Q- curie #MSUB -E '--no-requeue'
19#-Q- platine #!/usr/bin/ksh
20#-Q- platine ###################
21#-Q- platine ## PLATINE   CEA ##
22#-Q- platine ###################
23#-Q- platine #BSUB -J PACKDEBUG            # Nom du job
24#-Q- platine #BSUB -N                        # message a la fin du job
25#-Q- platine #BSUB -n 1                      # reservation des processeurs pour le job
26#-Q- platine #BSUB -W 4:00                   # Limite temps
27#-Q- platine #BSUB -q post                   # Passage en queue post
28#-Q- platine #BSUB -L /bin/ksh
29#-Q- sx8brodie #!/bin/ksh
30#-Q- sx8brodie #######################
31#-Q- sx8brodie ## SX8BRODIE   IDRIS ##
32#-Q- sx8brodie #######################
33#-Q- sx8brodie # Temps Elapsed max. d'une requete hh:mm:ss
34#-Q- sx8brodie # @ wall_clock_limit = 10:00:00
35#-Q- sx8brodie # Nom du travail LoadLeveler
36#-Q- sx8brodie # @ job_name   = PACKDEBUG
37#-Q- sx8brodie # Fichier de sortie standard du travail
38#-Q- sx8brodie # @ output     = $(job_name).$(jobid)
39#-Q- sx8brodie # Fichier de sortie d'erreur du travail
40#-Q- sx8brodie # @ error      =  $(job_name).$(jobid)
41#-Q- sx8brodie # pour recevoir un mail en cas de depassement du temps Elapsed (ou autre pb.)
42#-Q- sx8brodie # @ notification = error
43#-Q- sx8brodie # @ environment  = $DEBUG_debug ; $MODIPSL ; $libIGCM ; $libIGCM_SX ; $SUBMIT_DIR ; $DateBegin ; $DateEnd ; $PeriodPack ; $StandAlone ; $MASTER
44#-Q- sx8brodie # @ queue
45#-Q- aix6 #!/bin/ksh
46#-Q- aix6 #######################
47#-Q- aix6 ##   VARGAS   IDRIS  ##
48#-Q- aix6 #######################
49#-Q- aix6 # Temps Elapsed max. d'une requete hh:mm:ss
50#-Q- aix6 # @ wall_clock_limit = 10:00:00
51#-Q- aix6 # Nom du travail LoadLeveler
52#-Q- aix6 # @ job_name   = PACKDEBUG
53#-Q- aix6 # Fichier de sortie standard du travail
54#-Q- aix6 # @ output     = $(job_name).$(jobid)
55#-Q- aix6 # Fichier de sortie d'erreur du travail
56#-Q- aix6 # @ error      =  $(job_name).$(jobid)
57#-Q- aix6 # pour recevoir un mail en cas de depassement du temps Elapsed (ou autre pb.)
58#-Q- aix6 # @ notification = error
59#-Q- aix6 # @ environment  = $DEBUG_debug ; $MODIPSL ; $libIGCM ; $libIGCM_SX ; $SUBMIT_DIR ; $DateBegin ; $DateEnd ; $PeriodPack ; $StandAlone ; $MASTER
60#-Q- aix6 # @ queue
61#-Q- ulam #!/bin/ksh
62#-Q- ulam #######################
63#-Q- ulam ##   VARGAS   IDRIS  ##
64#-Q- ulam #######################
65#-Q- ulam # Temps Elapsed max. d'une requete hh:mm:ss
66#-Q- ulam # @ wall_clock_limit = 10:00:00
67#-Q- ulam # Nom du travail LoadLeveler
68#-Q- ulam # @ job_name   = PACKDEBUG
69#-Q- ulam # Fichier de sortie standard du travail
70#-Q- ulam # @ output     = $(job_name).$(jobid)
71#-Q- ulam # Fichier de sortie d'erreur du travail
72#-Q- ulam # @ error      =  $(job_name).$(jobid)
73#-Q- ulam # pour recevoir un mail en cas de depassement du temps Elapsed (ou autre pb.)
74#-Q- ulam # @ notification = error
75#-Q- ulam # @ environment  = $DEBUG_debug ; $MODIPSL ; $libIGCM ; $libIGCM_SX ; $SUBMIT_DIR ; $DateBegin ; $DateEnd ; $PeriodPack ; $StandAlone ; $MASTER
76#-Q- ulam # @ queue
77#-Q- sx8mercure #!/bin/ksh
78#-Q- sx8mercure ######################
79#-Q- sx8mercure ## SX8MERCURE   CEA ##
80#-Q- sx8mercure ######################
81#-Q- sx8mercure #PBS -N PACKDEBUG          # Nom du job
82#-Q- sx8mercure #PBS -j o                    # regroupement des stdout et stderr
83#-Q- sx8mercure #PBS -S /usr/bin/ksh         # shell de soumission
84#-Q- sx8mercure #PBS -l memsz_job=1gb        # Limite memoire a 1 Go
85#-Q- sx8mercure #PBS -l cputim_job=24:00:00  # Limite temps a 1 heures
86#-Q- sx8mercure #PBS -q scalaire
87#-Q- sx8mercure #PBS -r n
88#-Q- sx9mercure #!/bin/ksh
89#-Q- sx9mercure ######################
90#-Q- sx9mercure ## SX9MERCURE  CCRT ##
91#-Q- sx9mercure ######################
92#-Q- sx9mercure #PBS -N PACKDEBUG          # Nom du job
93#-Q- sx9mercure #PBS -j o                    # regroupement des stdout et stderr
94#-Q- sx9mercure #PBS -S /usr/bin/ksh         # shell de soumission
95#-Q- sx9mercure #PBS -l memsz_job=1gb        # Limite memoire a 1 Go
96#-Q- sx9mercure #PBS -l elapstim_req=24:00:00  # Limite temps a 1 heures
97#-Q- sx9mercure #PBS -q scalaire
98#-Q- sx9mercure #PBS -r n
99#-Q- titane #!/bin/ksh
100#-Q- titane ######################
101#-Q- titane ## TITANE   CEA     ##
102#-Q- titane ######################
103#-Q- titane #MSUB -r PACKDEBUG    # Nom du job
104#-Q- titane #MSUB -eo
105#-Q- titane #MSUB -n 1              # Reservation du processus
106#-Q- titane #MSUB -T 86400          # Limite de temps elapsed du job
107#-Q- titane #MSUB -q mono
108#-Q- titane #MSUB -E '-rn'
109#-Q- lxiv8 ######################
110#-Q- lxiv8 ## OBELIX      LSCE ##
111#-Q- lxiv8 ######################
112#-Q- lxiv8 #PBS -N PACKDEBUG
113#-Q- lxiv8 #PBS -m a
114#-Q- lxiv8 #PBS -j oe
115#-Q- lxiv8 #PBS -q medium
116#-Q- lxiv8 #PBS -o PACKDEBUG.$$
117#-Q- lxiv8 #PBS -S /bin/ksh
118#-Q- default #!/bin/ksh
119#-Q- default ##################
120#-Q- default ## DEFAULT HOST ##
121#-Q- default ##################
122
123#**************************************************************
124# Author: Sebastien Denvil
125# Contact: Sebastien.Denvil__at__ipsl.jussieu.fr
126# $Revision::                                          $ Revision of last commit
127# $Author::                                            $ Author of last commit
128# $Date::                                              $ Date of last commit
129# IPSL (2006)
130#  This software is governed by the CeCILL licence see libIGCM/libIGCM_CeCILL.LIC
131#
132#**************************************************************
133
134#set -eu
135#set -vx
136
137date
138
139########################################################################
140
141#D- Flag to determine if this job in a standalone mode
142#D- Default : value from AA_job if any
143StandAlone=${StandAlone:=true}
144
145#D- Path to libIGCM
146#D- Default : value from AA_job if any
147# WARNING For StandAlone use : To run this script on some machine (ulam and cesium)
148# WARNING you must check MirrorlibIGCM variable in sys library.
149# WARNING If this variable is true, you must use libIGCM_POST path instead
150# WARNING of your running libIGCM directory.
151libIGCM=${libIGCM:=::modipsl::/libIGCM}
152
153#-D- $hostname of the MASTER job when SUBMIT_DIR is not visible on postprocessing computer.
154MASTER=${MASTER:=mercure|titane|brodie|vargas}
155
156#D- Flag to determine begin date for restart pack
157#D- Default : value from AA_job if any
158DateBegin=${DateBegin:=20000101}
159
160#D- Flag to determine end date for restart pack
161#D- Default : value from AA_job if any
162DateEnd=${DateEnd:=20691231}
163
164#D- Flag to determine pack period
165#D- Default : value from AA_job if any
166PeriodPack=${PeriodPack:=10Y}
167
168#D- Uncomment to run interactively
169#D- For testing purpose, will be remove
170#SUBMIT_DIR=${PWD}
171#RUN_DIR_PATH=${SCRATCHDIR}/Pack_Test
172
173#D- Increased verbosity (1, 2, 3)
174#D- Default : value from AA_job if any
175Verbosity=${Verbosity:=3}
176
177#D- Low level debug : to bypass lib test checks and stack construction
178#D- Default : value from AA_job if any
179DEBUG_debug=${DEBUG_debug:=false}
180
181#D- Keep following comments for now. Will be remove.
182
183#on veut archiver les fichiers restart
184#Dans le cadre du demenagement ils seront renommes
185#ATM/Restart/****.nc
186#OCE/Restart/****.nc
187#...
188#sous la forme
189#RESTART/ATM_****.nc
190#RESTART/OCE_****.nc
191#Attention de bien conserver les dates d'origines
192#
193#Dans le cadre de la production nouvelle chaine
194#ils auront directement le bon nom
195#
196#On veut egalement que l'archive soit par periode de temps
197# cette periode est definie par la taille du pack donc connue
198# en entree du script (1M, 1Y, 5Y, 10Y etc...)
199#
200# $1= PATH/config_card d'une simulation avec
201# TagName/JobName/ExperimentName/SpaceName/DateBegin/DateEnd
202# $2=PeriodPack en M/m ou Y/y
203
204########################################################################
205
206. ${libIGCM}/libIGCM_debug/libIGCM_debug.ksh
207( ${DEBUG_debug} ) && IGCM_debug_Check
208. ${libIGCM}/libIGCM_card/libIGCM_card.ksh
209( ${DEBUG_debug} ) && IGCM_card_Check
210. ${libIGCM}/libIGCM_date/libIGCM_date.ksh
211( ${DEBUG_debug} ) && IGCM_date_Check
212#-------
213. ${libIGCM}/libIGCM_sys/libIGCM_sys.ksh
214. ${libIGCM}/libIGCM_post/libIGCM_post.ksh
215
216########################################################################
217
218#set -vx
219
220RUN_DIR=${RUN_DIR_PATH}
221IGCM_sys_MkdirWork ${RUN_DIR}
222IGCM_sys_Cd ${RUN_DIR}
223
224# ------------------------------------------------------------------
225# Test if all was right before proceeding further
226# ------------------------------------------------------------------
227IGCM_debug_Verif_Exit_Post
228
229if [ ${StandAlone} = true ] ; then
230    CARD_DIR=${SUBMIT_DIR}
231else
232    CARD_DIR=${RUN_DIR_PATH}
233    IGCM_sys_Get_Master ${SUBMIT_DIR}/config.card ${RUN_DIR_PATH}
234    IGCM_sys_Get_Master ${SUBMIT_DIR}/run.card    ${RUN_DIR_PATH}
235    IGCM_sys_Get_Master ${SUBMIT_DIR}/COMP        ${RUN_DIR_PATH}
236    IGCM_sys_Get_Master ${SUBMIT_DIR}/POST        ${RUN_DIR_PATH}
237fi
238
239#====================================================
240# First of all
241#
242# Read config.card
243
244IGCM_card_DefineArrayFromSection     ${CARD_DIR}/config.card UserChoices
245typeset option
246for option in ${config_UserChoices[*]} ; do
247  IGCM_card_DefineVariableFromOption ${CARD_DIR}/config.card UserChoices ${option}
248done
249#
250IGCM_card_DefineArrayFromSection     ${CARD_DIR}/config.card Ensemble
251typeset option
252for option in ${config_Ensemble[*]} ; do
253  IGCM_card_DefineVariableFromOption ${CARD_DIR}/config.card Ensemble ${option}
254done
255#
256echo
257IGCM_debug_Print 1 "DefineArrayFromOption  : config_UserChoices"
258IGCM_debug_PrintVariables 3 config_UserChoices_JobName
259IGCM_debug_PrintVariables 3 config_UserChoices_LongName
260IGCM_debug_PrintVariables 3 config_UserChoices_TagName
261IGCM_debug_PrintVariables 3 config_UserChoices_SpaceName
262IGCM_debug_PrintVariables 3 config_UserChoices_ExperimentName
263IGCM_debug_PrintVariables 3 config_UserChoices_CalendarType
264IGCM_debug_PrintVariables 3 config_UserChoices_DateBegin
265IGCM_debug_PrintVariables 3 config_UserChoices_DateEnd
266IGCM_debug_PrintVariables 3 config_UserChoices_PeriodLength
267IGCM_debug_PrintVariables 3 config_Ensemble_EnsembleName
268IGCM_debug_PrintVariables 3 config_Ensemble_EnsembleDate
269echo
270
271#====================================================
272# Prepare environment
273#R_SAVE      : Job output storage directory
274#R_BUFR      : Job output buffered directory
275#STORE_DEBUG : Where we store tar files
276
277if ( [ ! X${config_UserChoices_SpaceName} = X ] && [ ! X${config_UserChoices_ExperimentName} = X ] ) ; then
278  FreeName=$( echo ${config_UserChoices_JobName} | sed 's/.*_//' )
279  if ( [ ! X${config_Ensemble_EnsembleName} = X ] && [ ! X${config_Ensemble_EnsembleDate} = X ] ) ; then
280    R_SAVE=${R_OUT}/${config_UserChoices_TagName}/${config_UserChoices_SpaceName}/${config_UserChoices_ExperimentName}/${config_Ensemble_EnsembleName}/${config_Ensemble_EnsembleDate}/${FreeName}
281    R_BUFR=${R_BUF}/${config_UserChoices_TagName}/${config_UserChoices_SpaceName}/${config_UserChoices_ExperimentName}/${config_Ensemble_EnsembleName}/${config_Ensemble_EnsembleDate}/${FreeName}
282  else
283    R_SAVE=${R_OUT}/${config_UserChoices_TagName}/${config_UserChoices_SpaceName}/${config_UserChoices_ExperimentName}/${FreeName}
284    R_BUFR=${R_BUF}/${config_UserChoices_TagName}/${config_UserChoices_SpaceName}/${config_UserChoices_ExperimentName}/${FreeName}
285  fi
286else
287  if ( [ ! X${config_Ensemble_EnsembleName} = X ] && [ ! X${config_Ensemble_EnsembleDate} = X ] ) ; then
288    R_SAVE=${R_OUT}/${config_UserChoices_TagName}/${config_Ensemble_EnsembleName}/${config_Ensemble_EnsembleDate}/${config_UserChoices_JobName}
289    R_BUFR=${R_BUF}/${config_UserChoices_TagName}/${config_Ensemble_EnsembleName}/${config_Ensemble_EnsembleDate}/${config_UserChoices_JobName}
290  else
291    R_SAVE=${R_OUT}/${config_UserChoices_TagName}/${config_UserChoices_JobName}
292    R_BUFR=${R_BUF}/${config_UserChoices_TagName}/${config_UserChoices_JobName}
293  fi
294fi
295IGCM_sys_TestDirArchive ${R_SAVE}
296[ $? != 0 ] && IGCM_debug_Exit "IGCM_sys_TestDirArchive"
297
298#STORE_DEBUG=/ccc/store/cont003/dsm/p86denv/.../DEBUG
299STORE_DEBUG=${R_SAVE}/DEBUG
300IGCM_sys_MkdirArchive ${STORE_DEBUG}
301
302#cd ${STORE_DEBUG}
303#rm -f *
304
305# Switch to script variables meaning (try to be compatible with ipsl_pack TGCC moving procedure)
306JobName=${config_UserChoices_JobName}
307echo $JobName $DateBegin $DateEnd
308
309# Clear txt file lists
310rm -f ${RUN_DIR}/liste_debug_files.txt
311rm -f ${RUN_DIR}/liste_out_files.txt
312rm -f ${RUN_DIR}/new_liste_debug_files.txt
313rm -f ${RUN_DIR}/liste_pack_*.txt
314
315# Create sorted debug list to work with
316find ${R_BUFR}/*/Debug -type f | sort >> ${RUN_DIR}/liste_debug_files.txt
317
318# Rename debug files we will work with using symlinks. use ???_ prefix ie NF-2
319#gawk -F/ '{dest_name=$(NF-2)("_") $(NF); system("cp --preserve " $0 " "dest_name)}' ${RUN_DIR}/liste_debug_files.txt
320gawk -F/ '{dest_name=$(NF-2)("_") $(NF); system("ln -s " $0 " "dest_name)}' ${RUN_DIR}/liste_debug_files.txt
321
322# Add out_ : output of execution files
323find ${R_BUFR}/Out -type f -name '*out_*' | sort >> ${RUN_DIR}/liste_out_files.txt
324
325# Rename out files we will work with using symlinks. use Out_ prefix ie NF-1
326gawk -F/ '{dest_name=$(NF-1)("_") $(NF); system("ln -s " $0 " "dest_name)}' ${RUN_DIR}/liste_out_files.txt
327
328# List renamed debug files. Exclude Job_xxx files.
329find ${RUN_DIR} -maxdepth 1 -mindepth 1 -name "???_*${JobName}*" -ls | sort -k 11 > ${RUN_DIR}/new_liste_debug_files.txt
330
331# ------------------------------------------------------------------
332# Test if all was right before proceeding further
333# ------------------------------------------------------------------
334IGCM_debug_Verif_Exit_Post
335
336# Init loop
337date_begin_pack=${DateBegin}
338date_end_simulation=${DateEnd}
339number_pack=1
340
341IGCM_debug_PrintVariables 3 date_begin_pack
342IGCM_debug_PrintVariables 3 date_end_simulation
343
344while [ ${date_begin_pack} -le ${date_end_simulation} ] ; do
345
346  IGCM_debug_PrintVariables 3 number_pack
347
348  DaysTemp=$( IGCM_date_DaysInCurrentPeriod ${date_begin_pack} ${PeriodPack} )
349  date_end_pack=$( IGCM_date_AddDaysToGregorianDate ${date_begin_pack} $(( ${DaysTemp} - 1 )) )
350
351  for file in $( gawk '{print $11}' ${RUN_DIR}/new_liste_debug_files.txt ); do
352    extract_date_file=$( echo ${file}  | sed -e "s/.*${JobName}_[0-9]*_//" )
353    date_file=$( echo ${extract_date_file} | sed 's/\([0-9]\{8\}\)_.*$/\1/g' )
354#   echo pack n°${number_pack}  ${date_file} ${date_begin_pack} ${date_end_pack}
355    if [ ${date_file} -le ${date_end_pack} ] && [ ${date_file} -ge ${date_begin_pack} ] ; then
356        echo $( basename ${file} ) >> ${RUN_DIR}/liste_pack_${date_begin_pack}_${date_end_pack}.txt
357        echo $( readlink ${file} ) >> ${RUN_DIR}/liste_remove_pack_${date_begin_pack}_${date_end_pack}.txt
358#    Will not work. Need to find a better ordering.
359#    elif [ ${date_file} -ge ${date_end_pack} ] ; then
360#      break
361    fi
362  done
363
364  # Create tar files
365  IGCM_debug_Print 1 "Tar ongoing"
366  tar -cvf ${JobName}_${date_begin_pack}_${date_end_pack}_debug.tar --dereference --files-from ${RUN_DIR}/liste_pack_${date_begin_pack}_${date_end_pack}.txt
367  # Save it
368  IGCM_sys_Put_Out ${JobName}_${date_begin_pack}_${date_end_pack}_debug.tar ${STORE_DEBUG}
369  # Clean it
370  IGCM_sys_Rm ${JobName}_${date_begin_pack}_${date_end_pack}_debug.tar
371  # Clean links
372  cat ${RUN_DIR}/liste_pack_${date_begin_pack}_${date_end_pack}.txt | xargs rm
373  # Clean files links pointed to
374  cat ${RUN_DIR}/liste_remove_pack_${date_begin_pack}_${date_end_pack}.txt | xargs rm
375  # Save the list of files that has been pack (tar)
376  #mv ${RUN_DIR}/liste_pack_${date_begin_pack}_${date_end_pack}.txt ${STORE_DEBUG}
377  IGCM_debug_Print 1 "Tar and cleaning done"
378
379  (( number_pack = number_pack + 1 ))
380
381  # Add 1 day to date_end_pack to have the new date_begin_pack
382  date_begin_pack=$( IGCM_date_AddDaysToGregorianDate ${date_end_pack} 1 )
383
384done
385
386# Clean RUN_DIR_PATH (necessary for cesium and titane only)
387IGCM_sys_RmRunDir -Rf ${RUN_DIR_PATH}
388
389date
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