source: trunk/libIGCM/AA_pack_restart @ 765

Last change on this file since 765 was 765, checked in by mafoipsl, 11 years ago
  • Consolidation of AA_pack_debug and AA_pack_restart : don't delete pre-packed files if Put_Out doesn't work.
  • On curie : add information about file before Put_Out.
  • Change comments into libIGCM_debug. Thanks to Masa :-)
  • Property svn:keywords set to Revision Author Date
File size: 13.8 KB
Line 
1#-Q- cesium #!/bin/ksh
2#-Q- cesium ######################
3#-Q- cesium ## CESIUM   CEA ##
4#-Q- cesium ######################
5#-Q- cesium #MSUB -r PACKRESTART    # Nom du job
6#-Q- cesium #MSUB -N 1              # Reservation du noeud
7#-Q- cesium #MSUB -n 1              # Reservation du processus
8#-Q- cesium #MSUB -T 86400          # Limite de temps elapsed du job
9#-Q- cesium #MSUB -E "-j o"
10#-Q- cesium #MSUB -E "-S /bin/ksh"
11#-Q- curie ######################
12#-Q- curie ## CURIE   TGCC/CEA ##
13#-Q- curie ######################
14#-Q- curie #MSUB -r PACKRESTART    # Nom du job               
15#-Q- curie #MSUB -eo
16#-Q- curie #MSUB -n 1              # Reservation du processus
17#-Q- curie #MSUB -T 86400          # Limite de temps elapsed du job
18#-Q- curie #MSUB -q xlarge
19#-Q- curie #MSUB -Q normal
20#-Q- curie set +x
21#-Q- platine #!/usr/bin/ksh
22#-Q- platine ###################
23#-Q- platine ## PLATINE   CEA ##
24#-Q- platine ###################
25#-Q- platine #BSUB -J PACKRESTART            # Nom du job
26#-Q- platine #BSUB -N                        # message a la fin du job
27#-Q- platine #BSUB -n 1                      # reservation des processeurs pour le job
28#-Q- platine #BSUB -W 4:00                   # Limite temps
29#-Q- platine #BSUB -q post                   # Passage en queue post
30#-Q- platine #BSUB -L /bin/ksh
31#-Q- sx8brodie #!/bin/ksh
32#-Q- sx8brodie #######################
33#-Q- sx8brodie ## SX8BRODIE   IDRIS ##
34#-Q- sx8brodie #######################
35#-Q- sx8brodie # Temps Elapsed max. d'une requete hh:mm:ss
36#-Q- sx8brodie # @ wall_clock_limit = 10:00:00
37#-Q- sx8brodie # Nom du travail LoadLeveler
38#-Q- sx8brodie # @ job_name   = PACKRESTART
39#-Q- sx8brodie # Fichier de sortie standard du travail
40#-Q- sx8brodie # @ output     = $(job_name).$(jobid)
41#-Q- sx8brodie # Fichier de sortie d'erreur du travail
42#-Q- sx8brodie # @ error      =  $(job_name).$(jobid)
43#-Q- sx8brodie # pour recevoir un mail en cas de depassement du temps Elapsed (ou autre pb.)
44#-Q- sx8brodie # @ notification = error
45#-Q- sx8brodie # @ environment  = $DEBUG_debug ; $MODIPSL ; $libIGCM ; $libIGCM_SX ; $SUBMIT_DIR ; $DateBegin ; $DateEnd ; $PeriodPack ; $StandAlone ; $MASTER
46#-Q- sx8brodie # @ queue
47#-Q- aix6 #!/bin/ksh
48#-Q- aix6 #######################
49#-Q- aix6 ##   VARGAS   IDRIS  ##
50#-Q- aix6 #######################
51#-Q- aix6 # Temps Elapsed max. d'une requete hh:mm:ss
52#-Q- aix6 # @ wall_clock_limit = 10:00:00
53#-Q- aix6 # Nom du travail LoadLeveler
54#-Q- aix6 # @ job_name   = PACKRESTART
55#-Q- aix6 # Fichier de sortie standard du travail
56#-Q- aix6 # @ output     = $(job_name).$(jobid)
57#-Q- aix6 # Fichier de sortie d'erreur du travail
58#-Q- aix6 # @ error      =  $(job_name).$(jobid)
59#-Q- aix6 # pour recevoir un mail en cas de depassement du temps Elapsed (ou autre pb.)
60#-Q- aix6 # @ notification = error
61#-Q- aix6 # @ environment  = $DEBUG_debug ; $MODIPSL ; $libIGCM ; $libIGCM_SX ; $SUBMIT_DIR ; $DateBegin ; $DateEnd ; $PeriodPack ; $StandAlone ; $MASTER
62#-Q- aix6 # @ queue
63#-Q- ulam #!/bin/ksh
64#-Q- ulam #######################
65#-Q- ulam ##   VARGAS   IDRIS  ##
66#-Q- ulam #######################
67#-Q- ulam # Temps Elapsed max. d'une requete hh:mm:ss
68#-Q- ulam # @ wall_clock_limit = 10:00:00
69#-Q- ulam # Nom du travail LoadLeveler
70#-Q- ulam # @ job_name   = PACKRESTART
71#-Q- ulam # Fichier de sortie standard du travail
72#-Q- ulam # @ output     = $(job_name).$(jobid)
73#-Q- ulam # Fichier de sortie d'erreur du travail
74#-Q- ulam # @ error      =  $(job_name).$(jobid)
75#-Q- ulam # pour recevoir un mail en cas de depassement du temps Elapsed (ou autre pb.)
76#-Q- ulam # @ notification = error
77#-Q- ulam # @ environment  = $DEBUG_debug ; $MODIPSL ; $libIGCM ; $libIGCM_SX ; $SUBMIT_DIR ; $DateBegin ; $DateEnd ; $PeriodPack ; $StandAlone ; $MASTER
78#-Q- ulam # @ queue
79#-Q- sx8mercure #!/bin/ksh
80#-Q- sx8mercure ######################
81#-Q- sx8mercure ## SX8MERCURE   CEA ##
82#-Q- sx8mercure ######################
83#-Q- sx8mercure #PBS -N PACKRESTART          # Nom du job
84#-Q- sx8mercure #PBS -j o                    # regroupement des stdout et stderr
85#-Q- sx8mercure #PBS -S /usr/bin/ksh         # shell de soumission
86#-Q- sx8mercure #PBS -l memsz_job=1gb        # Limite memoire a 1 Go
87#-Q- sx8mercure #PBS -l cputim_job=24:00:00  # Limite temps a 1 heures
88#-Q- sx8mercure #PBS -q scalaire
89#-Q- sx8mercure #PBS -r n
90#-Q- sx9mercure #!/bin/ksh
91#-Q- sx9mercure ######################
92#-Q- sx9mercure ## SX9MERCURE  CCRT ##
93#-Q- sx9mercure ######################
94#-Q- sx9mercure #PBS -N PACKRESTART          # Nom du job
95#-Q- sx9mercure #PBS -j o                    # regroupement des stdout et stderr
96#-Q- sx9mercure #PBS -S /usr/bin/ksh         # shell de soumission
97#-Q- sx9mercure #PBS -l memsz_job=1gb        # Limite memoire a 1 Go
98#-Q- sx9mercure #PBS -l elapstim_req=24:00:00  # Limite temps a 1 heures
99#-Q- sx9mercure #PBS -q scalaire
100#-Q- sx9mercure #PBS -r n
101#-Q- titane #!/bin/ksh
102#-Q- titane ######################
103#-Q- titane ## TITANE   CEA     ##
104#-Q- titane ######################
105#-Q- titane #MSUB -r PACKRESTART    # Nom du job
106#-Q- titane #MSUB -eo
107#-Q- titane #MSUB -n 1              # Reservation du processus
108#-Q- titane #MSUB -T 86400          # Limite de temps elapsed du job
109#-Q- titane #MSUB -q mono
110#-Q- titane #MSUB -E '-rn'
111#-Q- lxiv8 ######################
112#-Q- lxiv8 ## OBELIX      LSCE ##
113#-Q- lxiv8 ######################
114#-Q- lxiv8 #PBS -N PACKRESTART
115#-Q- lxiv8 #PBS -m a
116#-Q- lxiv8 #PBS -j oe
117#-Q- lxiv8 #PBS -q medium
118#-Q- lxiv8 #PBS -o PACKRESTART.$$
119#-Q- lxiv8 #PBS -S /bin/ksh
120#-Q- default #!/bin/ksh
121#-Q- default ##################
122#-Q- default ## DEFAULT HOST ##
123#-Q- default ##################
124
125#**************************************************************
126# Author: Sebastien Denvil
127# Contact: Sebastien.Denvil__at__ipsl.jussieu.fr
128# $Revision::                                          $ Revision of last commit
129# $Author::                                            $ Author of last commit
130# $Date::                                              $ Date of last commit
131# IPSL (2006)
132#  This software is governed by the CeCILL licence see libIGCM/libIGCM_CeCILL.LIC
133#
134#**************************************************************
135
136#set -eu
137#set -vx
138
139date
140
141#D- Task type (computing or post-processing)
142TaskType=post-processing
143
144########################################################################
145
146#D- Flag to determine if this job in a standalone mode
147#D- Default : value from AA_job if any
148StandAlone=${StandAlone:=true}
149
150#D- Path to libIGCM
151#D- Default : value from AA_job if any
152# WARNING For StandAlone use : To run this script on some machine (ulam and cesium)
153# WARNING you must check MirrorlibIGCM variable in sys library.
154# WARNING If this variable is true, you must use libIGCM_POST path instead
155# WARNING of your running libIGCM directory.
156libIGCM=${libIGCM:=::modipsl::/libIGCM}
157
158#-D- $hostname of the MASTER job when SUBMIT_DIR is not visible on postprocessing computer.
159MASTER=${MASTER:=mercure|titane|brodie|vargas}
160
161#D- Flag to determine begin date for restart pack
162#D- Default : value from AA_job if any
163DateBegin=${DateBegin:=20000101}
164
165#D- Flag to determine end date for restart pack
166#D- Default : value from AA_job if any
167DateEnd=${DateEnd:=20691231}
168
169#D- Flag to determine pack period
170#D- Default : value from AA_job if any
171PeriodPack=${PeriodPack:=10Y}
172
173#D- Uncomment to run interactively
174#D- For testing purpose, will be remove
175#SUBMIT_DIR=${PWD}
176#RUN_DIR_PATH=${SCRATCHDIR}/Pack_Test
177
178#D- Increased verbosity (1, 2, 3)
179#D- Default : value from AA_job if any
180Verbosity=${Verbosity:=3}
181
182#D- Low level debug : to bypass lib test checks and stack construction
183#D- Default : value from AA_job if any
184DEBUG_debug=${DEBUG_debug:=false}
185
186#D- Keep following comments for now. Will be remove.
187
188#on veut archiver les fichiers restart
189#Dans le cadre du demenagement ils seront renommes
190#ATM/Restart/****.nc
191#OCE/Restart/****.nc
192#...
193#sous la forme
194#RESTART/ATM_****.nc
195#RESTART/OCE_****.nc
196#Attention de bien conserver les dates d'origines
197#
198#Dans le cadre de la production nouvelle chaine
199#ils auront directement le bon nom
200#
201#On veut egalement que l'archive soit par periode de temps
202# cette periode est definie par la taille du pack donc connue
203# en entree du script (1M, 1Y, 5Y, 10Y etc...)
204#
205# $1= PATH/config_card d'une simulation avec
206# TagName/JobName/ExperimentName/SpaceName/DateBegin/DateEnd
207# $2=PeriodPack en M/m ou Y/y
208
209########################################################################
210
211. ${libIGCM}/libIGCM_debug/libIGCM_debug.ksh
212( ${DEBUG_debug} ) && IGCM_debug_Check
213. ${libIGCM}/libIGCM_card/libIGCM_card.ksh
214( ${DEBUG_debug} ) && IGCM_card_Check
215. ${libIGCM}/libIGCM_date/libIGCM_date.ksh
216( ${DEBUG_debug} ) && IGCM_date_Check
217#-------
218. ${libIGCM}/libIGCM_sys/libIGCM_sys.ksh
219. ${libIGCM}/libIGCM_config/libIGCM_config.ksh
220. ${libIGCM}/libIGCM_post/libIGCM_post.ksh
221
222########################################################################
223
224#set -vx
225
226RUN_DIR=${RUN_DIR_PATH}
227IGCM_sys_MkdirWork ${RUN_DIR}
228IGCM_sys_Cd ${RUN_DIR}
229
230# ------------------------------------------------------------------
231# Test if all was right before proceeding further
232# ------------------------------------------------------------------
233IGCM_debug_Verif_Exit_Post
234
235if [ ${StandAlone} = true ] ; then
236    CARD_DIR=${SUBMIT_DIR}
237else
238    CARD_DIR=${RUN_DIR_PATH}
239    IGCM_sys_Get_Master ${SUBMIT_DIR}/config.card ${RUN_DIR_PATH}
240    IGCM_sys_Get_Master ${SUBMIT_DIR}/run.card    ${RUN_DIR_PATH}
241    IGCM_sys_Get_Master ${SUBMIT_DIR}/COMP        ${RUN_DIR_PATH}
242    IGCM_sys_Get_Master ${SUBMIT_DIR}/POST        ${RUN_DIR_PATH}
243fi
244
245#==================================
246# First of all
247#
248# Read libIGCM compatibility version in config.card
249# Read UserChoices section
250# Read Ensemble section
251# Read Post section
252# Define all netcdf output directories
253#==================================
254IGCM_config_CommonConfiguration ${CARD_DIR}/config.card
255#
256IGCM_sys_TestDirArchive ${R_SAVE}
257[ $? != 0 ] && IGCM_debug_Exit "IGCM_sys_TestDirArchive"
258
259#STORE_RESTART=/ccc/store/cont003/dsm/p86denv/.../RESTART
260STORE_RESTART=${R_SAVE}/RESTART
261IGCM_sys_MkdirArchive ${STORE_RESTART}
262
263#cd ${STORE_RESTART}
264#rm -f *
265
266# Switch to script variables meaning (try to be compatible with ipsl_pack TGCC moving procedure)
267JobName=${config_UserChoices_JobName}
268echo $JobName $R_BUFR $DateBegin $DateEnd
269
270# Clear txt file lists
271rm -f ${RUN_DIR}/liste_restart_files.txt
272rm -f ${RUN_DIR}/new_liste_restart_files.txt
273rm -f ${RUN_DIR}/liste_pack_*.txt
274
275# Create sorted restart list to work with
276find ${R_BUFR}/*/Restart -name "*.*" | sort >> ${RUN_DIR}/liste_restart_files.txt
277
278# Rename restart files we will work with using symlinks
279#gawk -F/ '{dest_name=$(NF-2)("_") $(NF); system("cp --preserve " $0 " "dest_name)}' ${RUN_DIR}/liste_restart_files.txt
280gawk -F/ '{dest_name=$(NF-2)("_") $(NF); system("ln -s " $0 " "dest_name)}' ${RUN_DIR}/liste_restart_files.txt
281
282# List renamed restart files
283find ${RUN_DIR} -maxdepth 1 -mindepth 1 -name "???_*${JobName}*" -ls | sort -k 11 > ${RUN_DIR}/new_liste_restart_files.txt
284
285# ------------------------------------------------------------------
286# Test if all was right before proceeding further
287# ------------------------------------------------------------------
288IGCM_debug_Verif_Exit_Post
289
290# Init loop
291date_begin_pack=${DateBegin}
292date_end_simulation=${DateEnd}
293number_pack=1
294
295IGCM_debug_PrintVariables 3 date_begin_pack
296IGCM_debug_PrintVariables 3 date_end_simulation
297
298# last restart of the previous period : to be deleted
299typeset date_end_previous
300date_end_previous=$( IGCM_date_AddDaysToGregorianDate ${date_begin_pack} -1 )
301
302while [ ${date_begin_pack} -le ${date_end_simulation} ] ; do
303
304  IGCM_debug_PrintVariables 3 number_pack
305
306  DaysTemp=$( IGCM_date_DaysInCurrentPeriod ${date_begin_pack} ${PeriodPack} )
307  date_end_pack=$( IGCM_date_AddDaysToGregorianDate ${date_begin_pack} $(( ${DaysTemp} - 1 )) )
308
309  for file in $( gawk '{print $11}' ${RUN_DIR}/new_liste_restart_files.txt ); do
310    extract_date_file=$( echo ${file}  | sed -e "s/.*${JobName}_//" )
311    date_file=$( echo ${extract_date_file} | sed 's/\([0-9]\{8\}\)_.*$/\1/g' )
312    # warning demenagement. delete last restart of the previous pack
313    [  ${date_file} -eq ${date_end_previous} ] && echo $( readlink ${file} ) >> ${RUN_DIR}/liste_remove_pack_${date_begin_pack}_${date_end_pack}.txt
314    # echo pack number ${number_pack}  ${date_file} ${date_begin_pack} ${date_end_pack}
315    if [ ${date_file} -le ${date_end_pack} ] && [ ${date_file} -ge ${date_begin_pack} ] ; then
316      echo $( basename ${file} ) >> ${RUN_DIR}/liste_pack_${date_begin_pack}_${date_end_pack}.txt
317      # warning demenagement. do not delete last restart of this pack
318      [ ${date_file} -eq ${date_end_pack} ] || echo $( readlink ${file} ) >> ${RUN_DIR}/liste_remove_pack_${date_begin_pack}_${date_end_pack}.txt
319    fi
320  done
321
322  # Create tar files
323  IGCM_debug_Print 1 "Tar ongoing"
324  tar -cvf ${JobName}_${date_begin_pack}_${date_end_pack}_restart.tar --dereference --files-from ${RUN_DIR}/liste_pack_${date_begin_pack}_${date_end_pack}.txt
325  # Save it
326  IGCM_sys_Put_Out ${JobName}_${date_begin_pack}_${date_end_pack}_restart.tar ${STORE_RESTART}
327  # Clean it
328  IGCM_sys_Rm ${JobName}_${date_begin_pack}_${date_end_pack}_restart.tar
329  # ------------------------------------------------------------------
330  # Test if all was right before proceeding cleaning
331  # ------------------------------------------------------------------
332  IGCM_debug_Verif_Exit_Post
333  # Clean links
334  cat ${RUN_DIR}/liste_pack_${date_begin_pack}_${date_end_pack}.txt | xargs rm
335  # Clean files links pointed to
336  cat ${RUN_DIR}/liste_remove_pack_${date_begin_pack}_${date_end_pack}.txt | xargs rm
337  # Save the list of files that has been pack (tar)
338  #mv ${RUN_DIR}/liste_pack_${date_begin_pack}_${date_end_pack}.txt ${STORE_RESTART}
339  IGCM_debug_Print 1 "Tar and cleaning done"
340
341  (( number_pack = number_pack + 1 ))
342
343  # Add 1 day to date_end_pack to have the new date_begin_pack
344  date_begin_pack=$( IGCM_date_AddDaysToGregorianDate ${date_end_pack} 1 )
345
346done
347
348# Clean RUN_DIR_PATH (necessary for cesium and titane only)
349IGCM_sys_RmRunDir -Rf ${RUN_DIR_PATH}
350
351date
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