[622] | 1 | #-Q- curie ###################### |
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| 2 | #-Q- curie ## CURIE TGCC/CEA ## |
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| 3 | #-Q- curie ###################### |
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[626] | 4 | #-Q- curie #MSUB -r REBUILDARCH # Nom du job |
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[622] | 5 | #-Q- curie #MSUB -eo |
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| 6 | #-Q- curie #MSUB -n 1 # Reservation du processus |
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| 7 | #-Q- curie #MSUB -T 86400 # Limite de temps elapsed du job |
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[741] | 8 | #-Q- curie #MSUB -q xlarge |
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[704] | 9 | #-Q- curie #MSUB -Q normal |
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[837] | 10 | #-Q- curie #MSUB -A ::default_project:: |
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[681] | 11 | #-Q- curie set +x |
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[770] | 12 | #-Q- ada #!/bin/ksh |
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| 13 | #-Q- ada ####################### |
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[848] | 14 | #-Q- ada ## ADA IDRIS ## |
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[770] | 15 | #-Q- ada ####################### |
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[848] | 16 | #-Q- ada # @ job_type = serial |
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| 17 | #-Q- ada # @ requirements = (Feature == "prepost") |
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[770] | 18 | #-Q- ada # Temps Elapsed max. d'une requete hh:mm:ss |
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| 19 | #-Q- ada # @ wall_clock_limit = 10:00:00 |
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| 20 | #-Q- ada # Nom du travail LoadLeveler |
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| 21 | #-Q- ada # @ job_name = REBUILDARCH |
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| 22 | #-Q- ada # Fichier de sortie standard du travail |
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| 23 | #-Q- ada # @ output = $(job_name).$(jobid) |
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| 24 | #-Q- ada # Fichier de sortie d'erreur du travail |
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| 25 | #-Q- ada # @ error = $(job_name).$(jobid) |
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| 26 | #-Q- ada # pour recevoir un mail en cas de depassement du temps Elapsed (ou autre pb.) |
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| 27 | #-Q- ada # @ notification = error |
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| 28 | #-Q- ada # @ environment = $DEBUG_debug ; $MODIPSL ; $libIGCM ; $libIGCM_SX ; $SUBMIT_DIR ; $REBUILD_DIR ; $RebuildFromArchive ; $POST_DIR ; $DateBegin ; $PeriodDateBegin ; $PeriodDateEnd ; $NbRebuildDir ; $StandAlone ; $RESOL_ATM ; $RESOL_OCE ; $RESOL_ICE ; $RESOL_MBG ; $RESOL_SRF ; $RESOL_SBG ; $MASTER |
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| 29 | #-Q- ada # @ queue |
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[172] | 30 | #-Q- sx9mercure #!/bin/ksh |
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| 31 | #-Q- sx9mercure ###################### |
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[616] | 32 | #-Q- sx9mercure ## SX9MERCURE CCRT ## |
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[172] | 33 | #-Q- sx9mercure ###################### |
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[616] | 34 | #-Q- sx9mercure #PBS -N REBUILDARCH # Nom du job |
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| 35 | #-Q- sx9mercure #PBS -j o # regroupement des stdout et stderr |
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| 36 | #-Q- sx9mercure #PBS -S /usr/bin/ksh # shell de soumission |
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| 37 | #-Q- sx9mercure #PBS -l memsz_job=1gb # Limite memoire a 1 Go |
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| 38 | #-Q- sx9mercure #PBS -l elapstim_req=24:00:00 # Limite temps a 1 heures |
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| 39 | #-Q- sx9mercure #PBS -q scalaire |
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[640] | 40 | #-Q- sx9mercure #PBS -r n |
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[222] | 41 | #-Q- titane #!/bin/ksh |
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| 42 | #-Q- titane ###################### |
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[451] | 43 | #-Q- titane ## TITANE CEA ## |
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[222] | 44 | #-Q- titane ###################### |
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[837] | 45 | #-Q- titane #MSUB -r REBUILDARCH # Nom du job |
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[451] | 46 | #-Q- titane #MSUB -eo |
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| 47 | #-Q- titane #MSUB -n 1 # Reservation du processus |
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| 48 | #-Q- titane #MSUB -T 86400 # Limite de temps elapsed du job |
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[478] | 49 | #-Q- titane #MSUB -q mono |
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[643] | 50 | #-Q- titane #MSUB -E '-rn' |
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[281] | 51 | #-Q- lxiv8 ###################### |
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| 52 | #-Q- lxiv8 ## OBELIX LSCE ## |
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| 53 | #-Q- lxiv8 ###################### |
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| 54 | #-Q- lxiv8 #PBS -N REBUILDARCH |
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| 55 | #-Q- lxiv8 #PBS -m a |
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| 56 | #-Q- lxiv8 #PBS -j oe |
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| 57 | #-Q- lxiv8 #PBS -q medium |
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| 58 | #-Q- lxiv8 #PBS -o REBUILDARCH.$$ |
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| 59 | #-Q- lxiv8 #PBS -S /bin/ksh |
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[108] | 60 | #-Q- default #!/bin/ksh |
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| 61 | #-Q- default ################## |
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| 62 | #-Q- default ## DEFAULT HOST ## |
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| 63 | #-Q- default ################## |
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| 64 | |
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[373] | 65 | #************************************************************** |
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| 66 | # Author: Sebastien Denvil |
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| 67 | # Contact: Sebastien.Denvil__at__ipsl.jussieu.fr |
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| 68 | # $Revision:: $ Revision of last commit |
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| 69 | # $Author:: $ Author of last commit |
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| 70 | # $Date:: $ Date of last commit |
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[108] | 71 | # IPSL (2006) |
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| 72 | # This software is governed by the CeCILL licence see libIGCM/libIGCM_CeCILL.LIC |
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[373] | 73 | # |
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| 74 | #************************************************************** |
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[108] | 75 | |
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| 76 | #set -eu |
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| 77 | #set -vx |
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| 78 | |
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| 79 | date |
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| 80 | |
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[770] | 81 | #-Q- ada export OMP_NUM_THREADS=1 |
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[108] | 82 | |
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[712] | 83 | #D- Task type (computing or post-processing) |
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| 84 | TaskType=post-processing |
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| 85 | |
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[108] | 86 | ######################################################################## |
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| 87 | |
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| 88 | #D- Flag to determine if this job in a standalone mode |
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| 89 | #D- Default : value from AA_job if any |
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| 90 | StandAlone=${StandAlone:=true} |
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| 91 | |
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[554] | 92 | #D- Path to libIGCM |
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[206] | 93 | #D- Default : value from AA_job if any |
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[554] | 94 | # WARNING For StandAlone use : To run this script on some machine (ulam and cesium) |
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| 95 | # WARNING you must check MirrorlibIGCM variable in sys library. |
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| 96 | # WARNING If this variable is true, you must use libIGCM_POST path instead |
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| 97 | # WARNING of your running libIGCM directory. |
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[229] | 98 | libIGCM=${libIGCM:=::modipsl::/libIGCM} |
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[206] | 99 | |
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[327] | 100 | #-D- $hostname of the MASTER job when SUBMIT_DIR is not visible on postprocessing computer. |
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| 101 | MASTER=${MASTER:=mercure|titane|brodie|vargas} |
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| 102 | |
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[257] | 103 | #D- Do we rebuild parallel output from archive or from ${BIGDIR} |
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[206] | 104 | #D- Default : value from AA_job if any |
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[257] | 105 | RebuildFromArchive=${RebuildFromArchive:=true} |
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| 106 | |
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| 107 | #D- Directory where files we need to rebuild are store |
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| 108 | #D- Default : value from AA_job if any |
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| 109 | #D- if RebuildFromArchive=true REBUILD_DIR=${DMFDIR}/IGCM_OUT/.../JobName/TMP |
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| 110 | #D- example : /dmnfs09/cont003/p86denv/IGCM_OUT/IPSLCM5/CM5PIRC7/TMP |
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| 111 | #D- if RebuildFromArchive=false REBUILD_DIR=${BIGDIR}/REBUILD/TagName/JobName/ |
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| 112 | #D- example : /scratch/cont003/p86denv/REBUILD/IPSLCM5/SCAL-NEW |
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[206] | 113 | REBUILD_DIR=${REBUILD_DIR:=/path/to/your/TMP/REBUILD/FILES} |
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| 114 | |
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| 115 | #D- How many directory to rebuild we have to consider |
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| 116 | #D- Default : value from AA_job if any |
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[229] | 117 | NbRebuildDir=${NbRebuildDir:=1000} |
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[206] | 118 | |
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| 119 | #D- Suffix date we will use to determine which directory to rebuild |
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| 120 | #D- We will rebuild NbRebuildDir before and including PeriodDateBegin |
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| 121 | #D- Default : value from AA_job if any |
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[419] | 122 | LastPeriodForRebuild=${LastPeriodForRebuild:=${PeriodDateBegin:=18901201}} |
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[206] | 123 | |
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[108] | 124 | #D- Flag to determine atlas job's output directory |
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| 125 | #D- Default : value from libIGCM_post.ksh if any |
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| 126 | POST_DIR=${POST_DIR:=${PBS_O_WORKDIR}} |
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| 127 | |
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[327] | 128 | #-D- libIGCM_SX contains libIGCM on Master computer. Required on some center. Always OK. |
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| 129 | libIGCM_SX=${libIGCM_SX:=::modipsl::/libIGCM} |
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| 130 | |
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[108] | 131 | #D- Increased verbosity (1, 2, 3) |
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| 132 | #D- Default : value from AA_job if any |
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| 133 | Verbosity=${Verbosity:=3} |
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| 134 | |
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| 135 | #D- Low level debug : to bypass lib test checks and stack construction |
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| 136 | #D- Default : value from AA_job if any |
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| 137 | DEBUG_debug=${DEBUG_debug:=false} |
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| 138 | |
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| 139 | #D- TEMPORARY Flag to determine atmospheric resolution |
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| 140 | #D- Default : value from atmospheric driver if any |
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[135] | 141 | RESOL_ATM=${RESOL_ATM:=ALL} |
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[108] | 142 | |
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| 143 | #D- TEMPORARY Flag to determine ocean resolution |
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| 144 | #D- Default : value from ocean driver if any |
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| 145 | RESOL_OCE=${RESOL_OCE:=ORCA2} |
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| 146 | |
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| 147 | #D- TEMPORARY Flag to determine ice resolution |
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| 148 | #D- Default : value from ice driver if any |
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| 149 | RESOL_ICE=${RESOL_ICE:=ORCA2} |
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| 150 | |
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[178] | 151 | #D- TEMPORARY Flag to determine biogeochemistry resolution |
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| 152 | #D- Default : value from ice driver if any |
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| 153 | RESOL_MBG=${RESOL_MBG:=ORCA2} |
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| 154 | |
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[108] | 155 | #D- Flag to determine surface resolution |
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| 156 | #D- Default : value from surface driver if any |
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[213] | 157 | RESOL_SRF=ALL |
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[108] | 158 | |
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[213] | 159 | #D- Flag to determine surface resolution |
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| 160 | #D- Default : value from surface driver if any |
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| 161 | RESOL_SBG=ALL |
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[207] | 162 | |
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[108] | 163 | ######################################################################## |
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| 164 | |
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| 165 | . ${libIGCM}/libIGCM_debug/libIGCM_debug.ksh |
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| 166 | . ${libIGCM}/libIGCM_card/libIGCM_card.ksh |
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| 167 | . ${libIGCM}/libIGCM_date/libIGCM_date.ksh |
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| 168 | #------- |
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| 169 | . ${libIGCM}/libIGCM_sys/libIGCM_sys.ksh |
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| 170 | . ${libIGCM}/libIGCM_post/libIGCM_post.ksh |
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[832] | 171 | #------- |
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| 172 | ( ${DEBUG_debug} ) && IGCM_debug_Check |
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| 173 | ( ${DEBUG_debug} ) && IGCM_card_Check |
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| 174 | ( ${DEBUG_debug} ) && IGCM_date_Check |
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[108] | 175 | |
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| 176 | ######################################################################## |
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| 177 | |
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| 178 | #set -vx |
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| 179 | |
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[157] | 180 | RUN_DIR=${RUN_DIR_PATH} |
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[202] | 181 | IGCM_sys_MkdirWork ${RUN_DIR} |
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| 182 | IGCM_sys_Cd ${RUN_DIR} |
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[436] | 183 | |
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| 184 | # ------------------------------------------------------------------ |
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| 185 | # Test if all was right before proceeding further |
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| 186 | # ------------------------------------------------------------------ |
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| 187 | IGCM_debug_Verif_Exit_Post |
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| 188 | |
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[202] | 189 | # |
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[236] | 190 | if [ ${RebuildFromArchive} = true ] ; then |
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[785] | 191 | ListAllRebuildDir=$( IGCM_sys_RshArchive ls -d ${REBUILD_DIR}/REBUILD_* | grep -B $(( ${NbRebuildDir} -1 )) ${LastPeriodForRebuild} ) |
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[236] | 192 | else |
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[785] | 193 | ListAllRebuildDir=$( IGCM_sys_RshMaster ls -d ${REBUILD_DIR}/REBUILD_* | grep -B $(( ${NbRebuildDir} -1 )) ${LastPeriodForRebuild} ) |
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[236] | 194 | fi |
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[157] | 195 | # |
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[108] | 196 | |
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| 197 | for directory in ${ListAllRebuildDir} ; do |
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[785] | 198 | # |
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| 199 | if [ ${RebuildFromArchive} = true ] ; then |
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| 200 | IGCM_sys_Get_Dir ${directory} ${RUN_DIR} |
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| 201 | else |
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| 202 | IGCM_sys_Get_Master ${directory} ${RUN_DIR} |
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| 203 | fi |
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| 204 | # |
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| 205 | IGCM_sys_Cd ${RUN_DIR}/$( basename ${directory} ) |
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[108] | 206 | |
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[785] | 207 | # -------------------------------------------------------------------- |
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| 208 | # Source function include in the REBUILD ksh and rebuild |
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| 209 | # -------------------------------------------------------------------- |
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| 210 | . ${RUN_DIR}/$( basename ${directory} )/rebuild.ksh |
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| 211 | IGCM_FlushRebuild |
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| 212 | # |
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| 213 | IGCM_sys_Cd ${RUN_DIR} |
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| 214 | # Clean Up |
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| 215 | # local clean up |
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| 216 | IGCM_sys_Rm -rf $( basename ${directory} ) |
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| 217 | # remote clean up |
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| 218 | if [ ${RebuildFromArchive} = true ] ; then |
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| 219 | IGCM_sys_RshArchive rm -rf ${directory} |
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| 220 | else |
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| 221 | IGCM_sys_Rm -rf ${directory} |
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| 222 | fi |
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[108] | 223 | done |
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[203] | 224 | |
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[590] | 225 | # Clean RUN_DIR_PATH (necessary for cesium and titane only) |
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[203] | 226 | IGCM_sys_RmRunDir -Rf ${RUN_DIR_PATH} |
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[590] | 227 | |
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| 228 | date |
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