source: trunk/libIGCM/AA_rebuild_fromArchive @ 461

Last change on this file since 461 was 451, checked in by sdipsl, 13 years ago
  • Rebuilds and patchs are done on titane's mono class
  • Standard error and standard output end up in the same file
  • Homegenize sleeping period across libIGCM_sys
  • Property svn:keywords set to Revision Author Date
File size: 11.2 KB
Line 
1#-Q- cesium #!/bin/ksh
2#-Q- cesium ######################
3#-Q- cesium ## CESIUM   CEA ##
4#-Q- cesium ######################
5#-Q- cesium #MSUB -r REBUILDARCH    # Nom du job               
6#-Q- cesium #MSUB -N 1              # Reservation du noeud
7#-Q- cesium #MSUB -n 1              # Reservation du processus
8#-Q- cesium #MSUB -T 86400          # Limite de temps elapsed du job
9#-Q- cesium #MSUB -E "-j o"
10#-Q- cesium #MSUB -E "-S /bin/ksh"
11#-Q- platine #!/usr/bin/ksh
12#-Q- platine ###################
13#-Q- platine ## PLATINE   CEA ##
14#-Q- platine ###################
15#-Q- platine #BSUB -J REBUILDARCH            # Nom du job
16#-Q- platine #BSUB -N                        # message a la fin du job
17#-Q- platine #BSUB -n 1                      # reservation des processeurs pour le job
18#-Q- platine #BSUB -W 4:00                   # Limite temps
19#-Q- platine #BSUB -q post                   # Passage en queue post
20#-Q- platine #BSUB -L /bin/ksh
21#-Q- sx8brodie #!/bin/ksh
22#-Q- sx8brodie #######################
23#-Q- sx8brodie ## SX8BRODIE   IDRIS ##
24#-Q- sx8brodie #######################
25#-Q- sx8brodie # Temps Elapsed max. d'une requete hh:mm:ss
26#-Q- sx8brodie # @ wall_clock_limit = 20:00:00
27#-Q- sx8brodie # Nom du travail LoadLeveler
28#-Q- sx8brodie # @ job_name   = REBUILDARCH
29#-Q- sx8brodie # Fichier de sortie standard du travail       
30#-Q- sx8brodie # @ output     = $(job_name).$(jobid)
31#-Q- sx8brodie # Fichier de sortie d'erreur du travail
32#-Q- sx8brodie # @ error      =  $(job_name).$(jobid)
33#-Q- sx8brodie # pour recevoir un mail en cas de depassement du temps Elapsed (ou autre pb.)
34#-Q- sx8brodie # @ notification = error
35#-Q- sx8brodie # @ environment  = $DEBUG_debug ; $MODIPSL ; $libIGCM ; $libIGCM_SX ; $SUBMIT_DIR ; $REBUILD_DIR ; $RebuildFromArchive ; $POST_DIR ; $DateBegin ; $PeriodDateBegin ; $PeriodDateEnd ; $NbRebuildDir ; $StandAlone ; $RESOL_ATM ; $RESOL_OCE ; $RESOL_ICE ; $RESOL_MBG ; $RESOL_SRF ; $RESOL_SBG ; $MASTER
36#-Q- sx8brodie # @ queue
37#-Q- aix6 #!/bin/ksh
38#-Q- aix6 #######################
39#-Q- aix6 ##   VARGAS   IDRIS  ##
40#-Q- aix6 #######################
41#-Q- aix6 # Temps Elapsed max. d'une requete hh:mm:ss
42#-Q- aix6 # @ wall_clock_limit = 20:00:00
43#-Q- aix6 # Nom du travail LoadLeveler
44#-Q- aix6 # @ job_name   = REBUILDARCH
45#-Q- aix6 # Fichier de sortie standard du travail
46#-Q- aix6 # @ output     = $(job_name).$(jobid)
47#-Q- aix6 # Fichier de sortie d'erreur du travail
48#-Q- aix6 # @ error      =  $(job_name).$(jobid)
49#-Q- aix6 # pour recevoir un mail en cas de depassement du temps Elapsed (ou autre pb.)
50#-Q- aix6 # @ notification = error
51#-Q- aix6 # @ environment  = $DEBUG_debug ; $MODIPSL ; $libIGCM ; $libIGCM_SX ; $SUBMIT_DIR ; $REBUILD_DIR ; $RebuildFromArchive ; $POST_DIR ; $DateBegin ; $PeriodDateBegin ; $PeriodDateEnd ; $NbRebuildDir ; $StandAlone ; $RESOL_ATM ; $RESOL_OCE ; $RESOL_ICE ; $RESOL_MBG ; $RESOL_SRF ; $RESOL_SBG ; $MASTER
52#-Q- aix6 # @ queue
53#-Q- ulam #!/bin/ksh
54#-Q- ulam #######################
55#-Q- ulam ##   ULAM   IDRIS  ##
56#-Q- ulam #######################
57#-Q- ulam # Temps Elapsed max. d'une requete hh:mm:ss
58#-Q- ulam # @ wall_clock_limit = 20:00:00
59#-Q- ulam # Nom du travail LoadLeveler
60#-Q- ulam # @ job_name   = REBUILDARCH
61#-Q- ulam # Fichier de sortie standard du travail
62#-Q- ulam # @ output     = $(job_name).$(jobid)
63#-Q- ulam # Fichier de sortie d'erreur du travail
64#-Q- ulam # @ error      =  $(job_name).$(jobid)
65#-Q- ulam # pour recevoir un mail en cas de depassement du temps Elapsed (ou autre pb.)
66#-Q- ulam # @ notification = error
67#-Q- ulam # @ environment  = $DEBUG_debug ; $MODIPSL ; $libIGCM ; $libIGCM_SX ; $SUBMIT_DIR ; $REBUILD_DIR ; $RebuildFromArchive ; $POST_DIR ; $DateBegin ; $PeriodDateBegin ; $PeriodDateEnd ; $NbRebuildDir ; $StandAlone ; $RESOL_ATM ; $RESOL_OCE ; $RESOL_ICE ; $RESOL_MBG ; $RESOL_SRF ; $RESOL_SBG ; $MASTER
68#-Q- ulam # @ queue
69#-Q- sx8mercure #!/bin/ksh
70#-Q- sx8mercure ######################
71#-Q- sx8mercure ## SX8MERCURE   CEA ##
72#-Q- sx8mercure ######################
73#-Q- sx8mercure #PBS -N REBUILDARCH          # Nom du job
74#-Q- sx8mercure #PBS -j o                    # regroupement des stdout et stderr
75#-Q- sx8mercure #PBS -S /usr/bin/ksh         # shell de soumission
76#-Q- sx8mercure #PBS -l memsz_job=1gb        # Limite memoire a 1 Go
77#-Q- sx8mercure #PBS -l cputim_job=24:00:00  # Limite temps a 1 heures
78#-Q- sx8mercure #PBS -q scalaire
79#-Q- sx9mercure #!/bin/ksh
80#-Q- sx9mercure ######################
81#-Q- sx9mercure ## CESIUM FOR SX9  CEA ##
82#-Q- sx9mercure ######################
83#-Q- sx9mercure #MSUB -r REBUILDARCH    # Nom du job               
84#-Q- sx9mercure #MSUB -N 1              # Reservation du noeud
85#-Q- sx9mercure #MSUB -n 1              # Reservation du processus
86#-Q- sx9mercure #MSUB -T 86400          # Limite de temps elapsed du job
87#-Q- sx9mercure #MSUB -E "-j o"
88#-Q- sx9mercure #MSUB -E "-S /bin/ksh"
89#-Q- titane #!/bin/ksh
90#-Q- titane ######################
91#-Q- titane ## TITANE   CEA     ##
92#-Q- titane ######################
93#-Q- titane #MSUB -r REBUILDARCH     # Nom du job               
94#-Q- titane #MSUB -o REBUILDARCH.out # nom du fichier de sortie
95#-Q- titane #MSUB -e REBUILDARCH.out # nom du fichier de sortie
96#-Q- titane #MSUB -eo
97#-Q- titane #MSUB -n 1               # Reservation du processus
98#-Q- titane #MSUB -T 86400           # Limite de temps elapsed du job
99#-Q- titane #MSUB -p gen2211
100#-Q- titane #MSUB -q mono
101#-Q- lxiv8 ######################
102#-Q- lxiv8 ## OBELIX      LSCE ##
103#-Q- lxiv8 ######################
104#-Q- lxiv8 #PBS -N REBUILDARCH
105#-Q- lxiv8 #PBS -m a
106#-Q- lxiv8 #PBS -j oe
107#-Q- lxiv8 #PBS -q medium
108#-Q- lxiv8 #PBS -o REBUILDARCH.$$
109#-Q- lxiv8 #PBS -S /bin/ksh
110#-Q- default #!/bin/ksh
111#-Q- default ##################
112#-Q- default ## DEFAULT HOST ##
113#-Q- default ##################
114
115#**************************************************************
116# Author: Sebastien Denvil
117# Contact: Sebastien.Denvil__at__ipsl.jussieu.fr
118# $Revision::                                          $ Revision of last commit
119# $Author::                                            $ Author of last commit
120# $Date::                                              $ Date of last commit
121# IPSL (2006)
122#  This software is governed by the CeCILL licence see libIGCM/libIGCM_CeCILL.LIC
123#
124#**************************************************************
125
126#set -eu
127#set -vx
128
129date
130
131#-Q- sx8brodie export OMP_NUM_THREADS=1
132#-Q- aix6 export OMP_NUM_THREADS=1
133#-Q- ulam export OMP_NUM_THREADS=1
134
135########################################################################
136
137#D- Flag to determine if this job in a standalone mode
138#D- Default : value from AA_job if any
139StandAlone=${StandAlone:=true}
140
141#D- Low level debug : to bypass lib test checks and stack construction
142#D- Default : value from AA_job if any
143libIGCM=${libIGCM:=::modipsl::/libIGCM}
144# WARNING for StandAlone used : To run this script on some machine,
145# you must check MirrorlibIGCM variable in sys library.
146# If this variable is true, you must use libIGCM_POST path instead
147# of your running libIGCM directory.
148
149#-D- $hostname of the MASTER job when SUBMIT_DIR is not visible on postprocessing computer.
150MASTER=${MASTER:=mercure|titane|brodie|vargas}
151
152#D- Do we rebuild parallel output from archive or from ${BIGDIR}
153#D- Default : value from AA_job if any
154RebuildFromArchive=${RebuildFromArchive:=true}
155
156#D- Directory where files we need to rebuild are store
157#D- Default : value from AA_job if any
158#D- if RebuildFromArchive=true REBUILD_DIR=${DMFDIR}/IGCM_OUT/.../JobName/TMP
159#D- example : /dmnfs09/cont003/p86denv/IGCM_OUT/IPSLCM5/CM5PIRC7/TMP
160#D- if RebuildFromArchive=false REBUILD_DIR=${BIGDIR}/REBUILD/TagName/JobName/
161#D- example : /scratch/cont003/p86denv/REBUILD/IPSLCM5/SCAL-NEW
162REBUILD_DIR=${REBUILD_DIR:=/path/to/your/TMP/REBUILD/FILES}
163
164#D- How many directory to rebuild we have to consider
165#D- Default : value from AA_job if any
166NbRebuildDir=${NbRebuildDir:=1000}
167
168#D- Suffix date we will use to determine which directory to rebuild
169#D- We will rebuild NbRebuildDir before and including PeriodDateBegin
170#D- Default : value from AA_job if any
171LastPeriodForRebuild=${LastPeriodForRebuild:=${PeriodDateBegin:=18901201}}
172
173#D- Flag to determine atlas job's output directory
174#D- Default : value from libIGCM_post.ksh if any
175POST_DIR=${POST_DIR:=${PBS_O_WORKDIR}}
176
177#-D- libIGCM_SX contains libIGCM on Master computer. Required on some center. Always OK.
178libIGCM_SX=${libIGCM_SX:=::modipsl::/libIGCM}
179
180#D- Increased verbosity (1, 2, 3)
181#D- Default : value from AA_job if any
182Verbosity=${Verbosity:=3}
183
184#D- Low level debug : to bypass lib test checks and stack construction
185#D- Default : value from AA_job if any
186DEBUG_debug=${DEBUG_debug:=false}
187
188#D- TEMPORARY Flag to determine atmospheric resolution
189#D- Default : value from atmospheric driver if any
190RESOL_ATM=${RESOL_ATM:=ALL}
191
192#D- TEMPORARY Flag to determine ocean resolution
193#D- Default : value from ocean driver if any
194RESOL_OCE=${RESOL_OCE:=ORCA2}
195
196#D- TEMPORARY Flag to determine ice resolution
197#D- Default : value from ice driver if any
198RESOL_ICE=${RESOL_ICE:=ORCA2}
199
200#D- TEMPORARY Flag to determine biogeochemistry resolution
201#D- Default : value from ice driver if any
202RESOL_MBG=${RESOL_MBG:=ORCA2}
203
204#D- Flag to determine surface resolution
205#D- Default : value from surface driver if any
206RESOL_SRF=ALL
207
208#D- Flag to determine surface resolution
209#D- Default : value from surface driver if any
210RESOL_SBG=ALL
211
212########################################################################
213
214. ${libIGCM}/libIGCM_debug/libIGCM_debug.ksh
215      ( ${DEBUG_debug} ) && IGCM_debug_Check
216. ${libIGCM}/libIGCM_card/libIGCM_card.ksh
217     ( ${DEBUG_debug} ) && IGCM_card_Check
218. ${libIGCM}/libIGCM_date/libIGCM_date.ksh
219     ( ${DEBUG_debug} ) && IGCM_date_Check
220#-------
221. ${libIGCM}/libIGCM_sys/libIGCM_sys.ksh
222. ${libIGCM}/libIGCM_post/libIGCM_post.ksh
223
224########################################################################
225
226#set -vx
227
228RUN_DIR=${RUN_DIR_PATH}
229IGCM_sys_MkdirWork ${RUN_DIR}
230IGCM_sys_Cd ${RUN_DIR}
231
232# ------------------------------------------------------------------
233# Test if all was right before proceeding further
234# ------------------------------------------------------------------
235IGCM_debug_Verif_Exit_Post
236
237#
238if [ ${RebuildFromArchive} = true ] ; then
239    ListAllRebuildDir=$( IGCM_sys_RshArchive ls -d ${REBUILD_DIR}/REBUILD_* | grep -B $(( ${NbRebuildDir} -1 )) ${LastPeriodForRebuild} )
240else
241    ListAllRebuildDir=$( IGCM_sys_RshMaster ls -d ${REBUILD_DIR}/REBUILD_* | grep -B $(( ${NbRebuildDir} -1 )) ${LastPeriodForRebuild} )
242fi
243#
244
245for directory in ${ListAllRebuildDir} ; do
246    #
247    if [ ${RebuildFromArchive} = true ] ; then
248        IGCM_sys_Get_Dir ${directory} ${RUN_DIR}
249    else
250        IGCM_sys_Get_Master ${directory} ${RUN_DIR}
251    fi
252    #
253    IGCM_sys_Cd ${RUN_DIR}/$( basename ${directory} )
254
255    # --------------------------------------------------------------------
256    # Source function include in the REBUILD ksh and rebuild
257    # --------------------------------------------------------------------
258    . ${RUN_DIR}/$( basename ${directory} )/rebuild.ksh
259    IGCM_FlushRebuild
260    #
261    IGCM_sys_Cd ${RUN_DIR}
262    # Clean Up
263    # local clean up
264    IGCM_sys_Rm -rf $( basename ${directory} )
265    # remote clean up
266    if [ ${RebuildFromArchive} = true ] ; then
267        IGCM_sys_RshArchive rm -rf ${directory}
268    else
269        IGCM_sys_Rm -rf ${directory}
270    fi
271done
272
273# Clean RUN_DIR_PATH (necessary for cesium only)
274IGCM_sys_RmRunDir -Rf ${RUN_DIR_PATH}
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