source: trunk/libIGCM/AA_rebuild_fromArchive @ 544

Last change on this file since 544 was 544, checked in by sdipsl, 12 years ago
  • Prepare libIGCM for TGCC migration. For now work for CCRT machines ONLY
  • SX8, SX9 and Titane are independant from DMNFS
    • 30 seconds between execution instead of at least 3 minutes ; sometimes hours
  • SX8, SX9 and Titane use their SCRATCHDIR as a BUFFER (for restart and text)
  • Titane simulations are entirely post-processed on titane mono
    • Working except create_se and atlas (missing software : ncap2, openpbm, ImageMagick?)
  • Cards are the same up to now
  • New indentation to ease readability ("svn diff -x -b" to ignore space when differencing)
  • Project (gen2211) is inherited from AA_job by post-processing jobs
    • will stop during config_check if Project is empty
  • Prepare easy switching (submitting post-processing here or there)
  • Homogenize CCRTs libIGCM_sys
  • Bugfixes
  • Cosmetics

First steps and still a long way to go.
  • Property svn:keywords set to Revision Author Date
File size: 11.0 KB
Line 
1#-Q- cesium #!/bin/ksh
2#-Q- cesium ######################
3#-Q- cesium ## CESIUM   CEA ##
4#-Q- cesium ######################
5#-Q- cesium #MSUB -r REBUILDARCH    # Nom du job               
6#-Q- cesium #MSUB -N 1              # Reservation du noeud
7#-Q- cesium #MSUB -n 1              # Reservation du processus
8#-Q- cesium #MSUB -T 86400          # Limite de temps elapsed du job
9#-Q- cesium #MSUB -E "-j o"
10#-Q- cesium #MSUB -E "-S /bin/ksh"
11#-Q- platine #!/usr/bin/ksh
12#-Q- platine ###################
13#-Q- platine ## PLATINE   CEA ##
14#-Q- platine ###################
15#-Q- platine #BSUB -J REBUILDARCH            # Nom du job
16#-Q- platine #BSUB -N                        # message a la fin du job
17#-Q- platine #BSUB -n 1                      # reservation des processeurs pour le job
18#-Q- platine #BSUB -W 4:00                   # Limite temps
19#-Q- platine #BSUB -q post                   # Passage en queue post
20#-Q- platine #BSUB -L /bin/ksh
21#-Q- sx8brodie #!/bin/ksh
22#-Q- sx8brodie #######################
23#-Q- sx8brodie ## SX8BRODIE   IDRIS ##
24#-Q- sx8brodie #######################
25#-Q- sx8brodie # Temps Elapsed max. d'une requete hh:mm:ss
26#-Q- sx8brodie # @ wall_clock_limit = 10:00:00
27#-Q- sx8brodie # Nom du travail LoadLeveler
28#-Q- sx8brodie # @ job_name   = REBUILDARCH
29#-Q- sx8brodie # Fichier de sortie standard du travail       
30#-Q- sx8brodie # @ output     = $(job_name).$(jobid)
31#-Q- sx8brodie # Fichier de sortie d'erreur du travail
32#-Q- sx8brodie # @ error      =  $(job_name).$(jobid)
33#-Q- sx8brodie # pour recevoir un mail en cas de depassement du temps Elapsed (ou autre pb.)
34#-Q- sx8brodie # @ notification = error
35#-Q- sx8brodie # @ environment  = $DEBUG_debug ; $MODIPSL ; $libIGCM ; $libIGCM_SX ; $SUBMIT_DIR ; $REBUILD_DIR ; $RebuildFromArchive ; $POST_DIR ; $DateBegin ; $PeriodDateBegin ; $PeriodDateEnd ; $NbRebuildDir ; $StandAlone ; $RESOL_ATM ; $RESOL_OCE ; $RESOL_ICE ; $RESOL_MBG ; $RESOL_SRF ; $RESOL_SBG ; $MASTER
36#-Q- sx8brodie # @ queue
37#-Q- aix6 #!/bin/ksh
38#-Q- aix6 #######################
39#-Q- aix6 ##   VARGAS   IDRIS  ##
40#-Q- aix6 #######################
41#-Q- aix6 # Temps Elapsed max. d'une requete hh:mm:ss
42#-Q- aix6 # @ wall_clock_limit = 10:00:00
43#-Q- aix6 # Nom du travail LoadLeveler
44#-Q- aix6 # @ job_name   = REBUILDARCH
45#-Q- aix6 # Fichier de sortie standard du travail
46#-Q- aix6 # @ output     = $(job_name).$(jobid)
47#-Q- aix6 # Fichier de sortie d'erreur du travail
48#-Q- aix6 # @ error      =  $(job_name).$(jobid)
49#-Q- aix6 # pour recevoir un mail en cas de depassement du temps Elapsed (ou autre pb.)
50#-Q- aix6 # @ notification = error
51#-Q- aix6 # @ environment  = $DEBUG_debug ; $MODIPSL ; $libIGCM ; $libIGCM_SX ; $SUBMIT_DIR ; $REBUILD_DIR ; $RebuildFromArchive ; $POST_DIR ; $DateBegin ; $PeriodDateBegin ; $PeriodDateEnd ; $NbRebuildDir ; $StandAlone ; $RESOL_ATM ; $RESOL_OCE ; $RESOL_ICE ; $RESOL_MBG ; $RESOL_SRF ; $RESOL_SBG ; $MASTER
52#-Q- aix6 # @ queue
53#-Q- ulam #!/bin/ksh
54#-Q- ulam #######################
55#-Q- ulam ##   ULAM   IDRIS  ##
56#-Q- ulam #######################
57#-Q- ulam # Temps Elapsed max. d'une requete hh:mm:ss
58#-Q- ulam # @ wall_clock_limit = 10:00:00
59#-Q- ulam # Nom du travail LoadLeveler
60#-Q- ulam # @ job_name   = REBUILDARCH
61#-Q- ulam # Fichier de sortie standard du travail
62#-Q- ulam # @ output     = $(job_name).$(jobid)
63#-Q- ulam # Fichier de sortie d'erreur du travail
64#-Q- ulam # @ error      =  $(job_name).$(jobid)
65#-Q- ulam # pour recevoir un mail en cas de depassement du temps Elapsed (ou autre pb.)
66#-Q- ulam # @ notification = error
67#-Q- ulam # @ environment  = $DEBUG_debug ; $MODIPSL ; $libIGCM ; $libIGCM_SX ; $SUBMIT_DIR ; $REBUILD_DIR ; $RebuildFromArchive ; $POST_DIR ; $DateBegin ; $PeriodDateBegin ; $PeriodDateEnd ; $NbRebuildDir ; $StandAlone ; $RESOL_ATM ; $RESOL_OCE ; $RESOL_ICE ; $RESOL_MBG ; $RESOL_SRF ; $RESOL_SBG ; $MASTER
68#-Q- ulam # @ queue
69#-Q- sx8mercure #!/bin/ksh
70#-Q- sx8mercure ######################
71#-Q- sx8mercure ## SX8MERCURE   CEA ##
72#-Q- sx8mercure ######################
73#-Q- sx8mercure #PBS -N REBUILDARCH          # Nom du job
74#-Q- sx8mercure #PBS -j o                    # regroupement des stdout et stderr
75#-Q- sx8mercure #PBS -S /usr/bin/ksh         # shell de soumission
76#-Q- sx8mercure #PBS -l memsz_job=1gb        # Limite memoire a 1 Go
77#-Q- sx8mercure #PBS -l cputim_job=24:00:00  # Limite temps a 1 heures
78#-Q- sx8mercure #PBS -q scalaire
79#-Q- sx9mercure #!/bin/ksh
80#-Q- sx9mercure ######################
81#-Q- sx9mercure ## CESIUM FOR SX9  CEA ##
82#-Q- sx9mercure ######################
83#-Q- sx9mercure #MSUB -r REBUILDARCH    # Nom du job               
84#-Q- sx9mercure #MSUB -N 1              # Reservation du noeud
85#-Q- sx9mercure #MSUB -n 1              # Reservation du processus
86#-Q- sx9mercure #MSUB -T 86400          # Limite de temps elapsed du job
87#-Q- sx9mercure #MSUB -E "-j o"
88#-Q- sx9mercure #MSUB -E "-S /bin/ksh"
89#-Q- titane #!/bin/ksh
90#-Q- titane ######################
91#-Q- titane ## TITANE   CEA     ##
92#-Q- titane ######################
93#-Q- titane #MSUB -r REBUILDARCH     # Nom du job               
94#-Q- titane #MSUB -eo
95#-Q- titane #MSUB -n 1               # Reservation du processus
96#-Q- titane #MSUB -T 86400           # Limite de temps elapsed du job
97#-Q- titane #MSUB -q mono
98#-Q- lxiv8 ######################
99#-Q- lxiv8 ## OBELIX      LSCE ##
100#-Q- lxiv8 ######################
101#-Q- lxiv8 #PBS -N REBUILDARCH
102#-Q- lxiv8 #PBS -m a
103#-Q- lxiv8 #PBS -j oe
104#-Q- lxiv8 #PBS -q medium
105#-Q- lxiv8 #PBS -o REBUILDARCH.$$
106#-Q- lxiv8 #PBS -S /bin/ksh
107#-Q- default #!/bin/ksh
108#-Q- default ##################
109#-Q- default ## DEFAULT HOST ##
110#-Q- default ##################
111
112#**************************************************************
113# Author: Sebastien Denvil
114# Contact: Sebastien.Denvil__at__ipsl.jussieu.fr
115# $Revision::                                          $ Revision of last commit
116# $Author::                                            $ Author of last commit
117# $Date::                                              $ Date of last commit
118# IPSL (2006)
119#  This software is governed by the CeCILL licence see libIGCM/libIGCM_CeCILL.LIC
120#
121#**************************************************************
122
123#set -eu
124#set -vx
125
126date
127
128#-Q- sx8brodie export OMP_NUM_THREADS=1
129#-Q- aix6 export OMP_NUM_THREADS=1
130#-Q- ulam export OMP_NUM_THREADS=1
131
132########################################################################
133
134#D- Flag to determine if this job in a standalone mode
135#D- Default : value from AA_job if any
136StandAlone=${StandAlone:=true}
137
138#D- Low level debug : to bypass lib test checks and stack construction
139#D- Default : value from AA_job if any
140libIGCM=${libIGCM:=::modipsl::/libIGCM}
141# WARNING for StandAlone used : To run this script on some machine,
142# you must check MirrorlibIGCM variable in sys library.
143# If this variable is true, you must use libIGCM_POST path instead
144# of your running libIGCM directory.
145
146#-D- $hostname of the MASTER job when SUBMIT_DIR is not visible on postprocessing computer.
147MASTER=${MASTER:=mercure|titane|brodie|vargas}
148
149#D- Do we rebuild parallel output from archive or from ${BIGDIR}
150#D- Default : value from AA_job if any
151RebuildFromArchive=${RebuildFromArchive:=true}
152
153#D- Directory where files we need to rebuild are store
154#D- Default : value from AA_job if any
155#D- if RebuildFromArchive=true REBUILD_DIR=${DMFDIR}/IGCM_OUT/.../JobName/TMP
156#D- example : /dmnfs09/cont003/p86denv/IGCM_OUT/IPSLCM5/CM5PIRC7/TMP
157#D- if RebuildFromArchive=false REBUILD_DIR=${BIGDIR}/REBUILD/TagName/JobName/
158#D- example : /scratch/cont003/p86denv/REBUILD/IPSLCM5/SCAL-NEW
159REBUILD_DIR=${REBUILD_DIR:=/path/to/your/TMP/REBUILD/FILES}
160
161#D- How many directory to rebuild we have to consider
162#D- Default : value from AA_job if any
163NbRebuildDir=${NbRebuildDir:=1000}
164
165#D- Suffix date we will use to determine which directory to rebuild
166#D- We will rebuild NbRebuildDir before and including PeriodDateBegin
167#D- Default : value from AA_job if any
168LastPeriodForRebuild=${LastPeriodForRebuild:=${PeriodDateBegin:=18901201}}
169
170#D- Flag to determine atlas job's output directory
171#D- Default : value from libIGCM_post.ksh if any
172POST_DIR=${POST_DIR:=${PBS_O_WORKDIR}}
173
174#-D- libIGCM_SX contains libIGCM on Master computer. Required on some center. Always OK.
175libIGCM_SX=${libIGCM_SX:=::modipsl::/libIGCM}
176
177#D- Increased verbosity (1, 2, 3)
178#D- Default : value from AA_job if any
179Verbosity=${Verbosity:=3}
180
181#D- Low level debug : to bypass lib test checks and stack construction
182#D- Default : value from AA_job if any
183DEBUG_debug=${DEBUG_debug:=false}
184
185#D- TEMPORARY Flag to determine atmospheric resolution
186#D- Default : value from atmospheric driver if any
187RESOL_ATM=${RESOL_ATM:=ALL}
188
189#D- TEMPORARY Flag to determine ocean resolution
190#D- Default : value from ocean driver if any
191RESOL_OCE=${RESOL_OCE:=ORCA2}
192
193#D- TEMPORARY Flag to determine ice resolution
194#D- Default : value from ice driver if any
195RESOL_ICE=${RESOL_ICE:=ORCA2}
196
197#D- TEMPORARY Flag to determine biogeochemistry resolution
198#D- Default : value from ice driver if any
199RESOL_MBG=${RESOL_MBG:=ORCA2}
200
201#D- Flag to determine surface resolution
202#D- Default : value from surface driver if any
203RESOL_SRF=ALL
204
205#D- Flag to determine surface resolution
206#D- Default : value from surface driver if any
207RESOL_SBG=ALL
208
209########################################################################
210
211. ${libIGCM}/libIGCM_debug/libIGCM_debug.ksh
212      ( ${DEBUG_debug} ) && IGCM_debug_Check
213. ${libIGCM}/libIGCM_card/libIGCM_card.ksh
214     ( ${DEBUG_debug} ) && IGCM_card_Check
215. ${libIGCM}/libIGCM_date/libIGCM_date.ksh
216     ( ${DEBUG_debug} ) && IGCM_date_Check
217#-------
218. ${libIGCM}/libIGCM_sys/libIGCM_sys.ksh
219. ${libIGCM}/libIGCM_post/libIGCM_post.ksh
220
221########################################################################
222
223#set -vx
224
225RUN_DIR=${RUN_DIR_PATH}
226IGCM_sys_MkdirWork ${RUN_DIR}
227IGCM_sys_Cd ${RUN_DIR}
228
229# ------------------------------------------------------------------
230# Test if all was right before proceeding further
231# ------------------------------------------------------------------
232IGCM_debug_Verif_Exit_Post
233
234#
235if [ ${RebuildFromArchive} = true ] ; then
236    ListAllRebuildDir=$( IGCM_sys_RshArchive ls -d ${REBUILD_DIR}/REBUILD_* | grep -B $(( ${NbRebuildDir} -1 )) ${LastPeriodForRebuild} )
237else
238    ListAllRebuildDir=$( IGCM_sys_RshMaster ls -d ${REBUILD_DIR}/REBUILD_* | grep -B $(( ${NbRebuildDir} -1 )) ${LastPeriodForRebuild} )
239fi
240#
241
242for directory in ${ListAllRebuildDir} ; do
243    #
244    if [ ${RebuildFromArchive} = true ] ; then
245        IGCM_sys_Get_Dir ${directory} ${RUN_DIR}
246    else
247        IGCM_sys_Get_Master ${directory} ${RUN_DIR}
248    fi
249    #
250    IGCM_sys_Cd ${RUN_DIR}/$( basename ${directory} )
251
252    # --------------------------------------------------------------------
253    # Source function include in the REBUILD ksh and rebuild
254    # --------------------------------------------------------------------
255    . ${RUN_DIR}/$( basename ${directory} )/rebuild.ksh
256    IGCM_FlushRebuild
257    #
258    IGCM_sys_Cd ${RUN_DIR}
259    # Clean Up
260    # local clean up
261    IGCM_sys_Rm -rf $( basename ${directory} )
262    # remote clean up
263    if [ ${RebuildFromArchive} = true ] ; then
264        IGCM_sys_RshArchive rm -rf ${directory}
265    else
266        IGCM_sys_Rm -rf ${directory}
267    fi
268done
269
270# Clean RUN_DIR_PATH (necessary for cesium only)
271IGCM_sys_RmRunDir -Rf ${RUN_DIR_PATH}
Note: See TracBrowser for help on using the repository browser.