source: trunk/libIGCM/AA_rebuild_fromWorkdir @ 1170

#-Q- curie ######################
#-Q- curie ## CURIE   TGCC/CEA ##
#-Q- curie ######################
#-Q- curie #MSUB -r REBUILDWRK     # Nom du job
#-Q- curie #MSUB -eo
#-Q- curie #MSUB -n 1              # Reservation du processus
#-Q- curie #MSUB -T 36000          # Limite de temps elapsed du job
#-Q- curie #MSUB -q standard       # xlarge:fat nodes standard:thin nodes
#-Q- curie #MSUB -x                # exclusive node (needed to use high speed disk below)
#-Q- curie #MSUB -Q normal
#-Q- curie #MSUB -A ::default_project::
#-Q- curie RUN_DIR_PATH=/tmp/REBUILD_DIR_MR_$$     # RAM high speed disk partition ; 250GB/node. Along with -q standard
#-Q- curie #RUN_DIR_PATH=/dev/shm/REBUILD_DIR_MR_$$ # SSD high speed disk partition ; 64GB/node.  Along with -q xlarge
#-Q- curie set +x
#-Q- ada #!/bin/ksh
#-Q- ada #######################
#-Q- ada ## ADA         IDRIS ##
#-Q- ada #######################
#-Q- ada # @ job_type = serial
#-Q- ada # @ requirements = (Feature == "prepost")
#-Q- ada # Temps Elapsed max. d'une requete hh:mm:ss
#-Q- ada # @ wall_clock_limit = 10:00:00
#-Q- ada # Nom du travail LoadLeveler
#-Q- ada # @ job_name   = REBUILDWRK
#-Q- ada # Fichier de sortie standard du travail
#-Q- ada # @ output     = $(job_name).$(jobid)
#-Q- ada # Fichier de sortie d'erreur du travail
#-Q- ada # @ error      =  $(job_name).$(jobid)
#-Q- ada # pour recevoir un mail en cas de depassement du temps Elapsed (ou autre pb.)
#-Q- ada # @ notification = error
#-Q- ada # @ environment  = $DEBUG_debug ; $BigBrother ; $MODIPSL ; $libIGCM ; $libIGCM_SX ; $SUBMIT_DIR ; $REBUILD_DIR ; $POST_DIR ; $Script_Post_Output ; $DateBegin ; $PeriodDateBegin ; $PeriodDateEnd ; $NbRebuildDir ; $StandAlone ; $RESOL_ATM ; $RESOL_OCE ; $RESOL_ICE ; $RESOL_MBG ; $RESOL_SRF ; $RESOL_SBG ; $MASTER
#-Q- ada # @ queue
#-Q- lxiv8 ######################
#-Q- lxiv8 ## OBELIX      LSCE ##
#-Q- lxiv8 ######################
#-Q- lxiv8 #PBS -N REBUILDWRK
#-Q- lxiv8 #PBS -m a
#-Q- lxiv8 #PBS -j oe
#-Q- lxiv8 #PBS -q medium
#-Q- lxiv8 #PBS -o REBUILDWRK.$$
#-Q- lxiv8 #PBS -S /bin/ksh
#-Q- default #!/bin/ksh
#-Q- default ##################
#-Q- default ## DEFAULT HOST ##
#-Q- default ##################

#**************************************************************
# Author: Sebastien Denvil
# Contact: Sebastien.Denvil__at__ipsl.jussieu.fr
# $Revision::                                          $ Revision of last commit
# $Author::                                            $ Author of last commit
# $Date::                                              $ Date of last commit
# IPSL (2006)
#  This software is governed by the CeCILL licence see libIGCM/libIGCM_CeCILL.LIC
#
#**************************************************************

#set -eu
#set -vx

date

#-Q- ada export OMP_NUM_THREADS=1

#D- Task type (computing or post-processing)
TaskType=post-processing

########################################################################

#D- Flag to determine if this job in a standalone mode
#D- Default : value from AA_job if any
StandAlone=${StandAlone:=true}

#D- Path to libIGCM
#D- Default : value from AA_job if any
# WARNING For StandAlone use : To run this script on some machine (ulam and cesium)
# WARNING you must check MirrorlibIGCM variable in sys library.
# WARNING If this variable is true, you must use libIGCM_POST path instead
# WARNING of your running libIGCM directory.
libIGCM=${libIGCM:=::modipsl::/libIGCM}

#-D- $hostname of the MASTER job when SUBMIT_DIR is not visible on postprocessing computer.
MASTER=${MASTER:=ada|curie}

#D- Directory where files we need to rebuild are store
#D- Default : value from AA_job if any
#D- REBUILD_DIR=${BIGDIR}/REBUILD/TagName/JobName/
#D- example : /scratch/cont003/p86denv/REBUILD/IPSLCM5/SCAL-NEW
REBUILD_DIR=${REBUILD_DIR:=/path/to/your/TMP/REBUILD/FILES}

#D- How many directory to rebuild we have to consider
#D- Default : value from AA_job if any
NbRebuildDir=${NbRebuildDir:=1000}

#D- Suffix date we will use to determine which directory to rebuild
#D- We will rebuild NbRebuildDir before and including PeriodDateBegin
#D- Default : value from AA_job if any
LastPeriodForRebuild=${LastPeriodForRebuild:=${PeriodDateBegin:=18901201}}

#D- Flag to determine atlas job's output directory
#D- Default : value from libIGCM_post.ksh if any
POST_DIR=${POST_DIR:=${PBS_O_WORKDIR}}

#-D- libIGCM_SX contains libIGCM on Master computer. Required on some center. Always OK.
libIGCM_SX=${libIGCM_SX:=::modipsl::/libIGCM}

#D- Increased verbosity (1, 2, 3)
#D- Default : value from AA_job if any
Verbosity=${Verbosity:=3}

#D- Low level debug : to bypass lib test checks and stack construction
#D- Default : value from AA_job if any
DEBUG_debug=${DEBUG_debug:=false}

#D- TEMPORARY Flag to determine atmospheric resolution
#D- Default : value from atmospheric driver if any
RESOL_ATM=${RESOL_ATM:=ALL}

#D- TEMPORARY Flag to determine ocean resolution
#D- Default : value from ocean driver if any
RESOL_OCE=${RESOL_OCE:=ORCA2}

#D- TEMPORARY Flag to determine ice resolution
#D- Default : value from ice driver if any
RESOL_ICE=${RESOL_ICE:=ORCA2}

#D- TEMPORARY Flag to determine biogeochemistry resolution
#D- Default : value from ice driver if any
RESOL_MBG=${RESOL_MBG:=ORCA2}

#D- Flag to determine surface resolution
#D- Default : value from surface driver if any
RESOL_SRF=ALL

#D- Flag to determine surface resolution
#D- Default : value from surface driver if any
RESOL_SBG=ALL

########################################################################

. ${libIGCM}/libIGCM_debug/libIGCM_debug.ksh
. ${libIGCM}/libIGCM_card/libIGCM_card.ksh
. ${libIGCM}/libIGCM_date/libIGCM_date.ksh
#-------
. ${libIGCM}/libIGCM_sys/libIGCM_sys.ksh
. ${libIGCM}/libIGCM_config/libIGCM_config.ksh
. ${libIGCM}/libIGCM_post/libIGCM_post.ksh
#-------
( ${DEBUG_debug} ) && IGCM_debug_Check
( ${DEBUG_debug} ) && IGCM_card_Check
( ${DEBUG_debug} ) && IGCM_date_Check

########################################################################

#set -vx

RUN_DIR=${RUN_DIR_PATH}
IGCM_sys_MkdirWork ${RUN_DIR}
IGCM_sys_Cd ${RUN_DIR}

# ------------------------------------------------------------------
# Test if all was right before proceeding further
# ------------------------------------------------------------------
IGCM_debug_Verif_Exit_Post

if [ ${StandAlone} = true ] ; then
  CARD_DIR=${SUBMIT_DIR}
else
  CARD_DIR=${RUN_DIR}
  IGCM_sys_Get_Master ${SUBMIT_DIR}/config.card ${RUN_DIR_PATH}
  IGCM_sys_Get_Master ${SUBMIT_DIR}/run.card    ${RUN_DIR_PATH}
  IGCM_sys_Get_Master ${SUBMIT_DIR}/COMP        ${RUN_DIR_PATH}
  IGCM_sys_Get_Master ${SUBMIT_DIR}/POST        ${RUN_DIR_PATH}
fi

#==================================
# First of all
#
# Read libIGCM compatibility version in config.card
# Read UserChoices section
# Read Ensemble section
# Read Post section
# Define all netcdf output directories
#==================================
IGCM_config_CommonConfiguration ${CARD_DIR}/config.card

# Directory list to work with
ListAllRebuildDir=$( IGCM_sys_RshMaster ls -d ${REBUILD_DIR}/REBUILD_* | grep -B $(( ${NbRebuildDir} -1 )) ${LastPeriodForRebuild} )

for directory in ${ListAllRebuildDir} ; do
  #
  IGCM_sys_Get_Master ${directory} ${RUN_DIR}
  #
  IGCM_sys_Cd ${RUN_DIR}/$( basename ${directory} )

  # --------------------------------------------------------------------
  # Source function include in the REBUILD ksh and rebuild
  # --------------------------------------------------------------------
  . ${RUN_DIR}/$( basename ${directory} )/rebuild.ksh
  IGCM_FlushRebuild
  #
  IGCM_sys_Cd ${RUN_DIR}
  # Clean Up
  # local clean up
  IGCM_sys_Rm -rf $( basename ${directory} )
  # remote clean up
  IGCM_sys_RshMaster rm -rf ${directory}
done

# Clean RUN_DIR_PATH (necessary for cesium and titane only)
IGCM_sys_RmRunDir -Rf ${RUN_DIR_PATH}

date