source: trunk/libIGCM/AA_rebuild_fromWorkdir @ 706

Last change on this file since 706 was 704, checked in by jgipsl, 12 years ago

=> Added "#MSUB -Q normal" in headings for jobs at curie : When submitting a job in test queue (#MSUB -Q test) all sub jobs will also be subbmitted in test queue if nothingelse is specified.

=> Changed in AA_job : use /bin/ksh at curie due to specific usage in SPINUP configuration.

=> Correct directory in libIGCM_sys_obelix.
  • Property svn:keywords set to Revision Author Date
File size: 11.6 KB
RevLine 
[314]1#-Q- cesium #!/bin/ksh
2#-Q- cesium ######################
3#-Q- cesium ## CESIUM   CEA ##
4#-Q- cesium ######################
5#-Q- cesium #MSUB -r REBUILDWRK     # Nom du job               
6#-Q- cesium #MSUB -N 1              # Reservation du noeud
7#-Q- cesium #MSUB -n 1              # Reservation du processus
8#-Q- cesium #MSUB -T 86400          # Limite de temps elapsed du job
9#-Q- cesium #MSUB -E "-j o"
10#-Q- cesium #MSUB -E "-S /bin/ksh"
[622]11#-Q- curie ######################
12#-Q- curie ## CURIE   TGCC/CEA ##
13#-Q- curie ######################
[626]14#-Q- curie #MSUB -r REBUILDWRK     # Nom du job               
[622]15#-Q- curie #MSUB -eo
16#-Q- curie #MSUB -n 1              # Reservation du processus
17#-Q- curie #MSUB -T 86400          # Limite de temps elapsed du job
[643]18#-Q- curie #MSUB -E '--no-requeue'
[681]19#-Q- curie #MSUB -q large
[704]20#-Q- curie #MSUB -Q normal
[681]21#-Q- curie set +x
[108]22#-Q- platine #!/usr/bin/ksh
23#-Q- platine ###################
24#-Q- platine ## PLATINE   CEA ##
25#-Q- platine ###################
26#-Q- platine #BSUB -J REBUILDWRK             # Nom du job
27#-Q- platine #BSUB -N                        # message a la fin du job
28#-Q- platine #BSUB -n 1                      # reservation des processeurs pour le job
29#-Q- platine #BSUB -W 4:00                   # Limite temps
30#-Q- platine #BSUB -q post                   # Passage en queue post
[426]31#-Q- platine #BSUB -L /bin/ksh
[108]32#-Q- sx8brodie #!/bin/ksh
33#-Q- sx8brodie #######################
34#-Q- sx8brodie ## SX8BRODIE   IDRIS ##
35#-Q- sx8brodie #######################
36#-Q- sx8brodie # Temps Elapsed max. d'une requete hh:mm:ss
[504]37#-Q- sx8brodie # @ wall_clock_limit = 10:00:00
[108]38#-Q- sx8brodie # Nom du travail LoadLeveler
39#-Q- sx8brodie # @ job_name   = REBUILDWRK
40#-Q- sx8brodie # Fichier de sortie standard du travail       
41#-Q- sx8brodie # @ output     = $(job_name).$(jobid)
42#-Q- sx8brodie # Fichier de sortie d'erreur du travail
43#-Q- sx8brodie # @ error      =  $(job_name).$(jobid)
44#-Q- sx8brodie # pour recevoir un mail en cas de depassement du temps Elapsed (ou autre pb.)
45#-Q- sx8brodie # @ notification = error
[387]46#-Q- sx8brodie # @ environment  = $DEBUG_debug ; $MODIPSL ; $libIGCM ; $libIGCM_SX ; $SUBMIT_DIR ; $REBUILD_DIR ; $RebuildFromArchive ; $POST_DIR ; $DateBegin ; $PeriodDateBegin ; $PeriodDateEnd ; $NbRebuildDir ; $StandAlone ; $RESOL_ATM ; $RESOL_OCE ; $RESOL_ICE ; $RESOL_MBG ; $RESOL_SRF ; $RESOL_SBG ; $MASTER
[108]47#-Q- sx8brodie # @ queue
48#-Q- aix6 #!/bin/ksh
49#-Q- aix6 #######################
50#-Q- aix6 ##   VARGAS   IDRIS  ##
51#-Q- aix6 #######################
52#-Q- aix6 # Temps Elapsed max. d'une requete hh:mm:ss
[504]53#-Q- aix6 # @ wall_clock_limit = 10:00:00
[108]54#-Q- aix6 # Nom du travail LoadLeveler
55#-Q- aix6 # @ job_name   = REBUILDWRK
56#-Q- aix6 # Fichier de sortie standard du travail
57#-Q- aix6 # @ output     = $(job_name).$(jobid)
58#-Q- aix6 # Fichier de sortie d'erreur du travail
59#-Q- aix6 # @ error      =  $(job_name).$(jobid)
60#-Q- aix6 # pour recevoir un mail en cas de depassement du temps Elapsed (ou autre pb.)
61#-Q- aix6 # @ notification = error
[387]62#-Q- aix6 # @ environment  = $DEBUG_debug ; $MODIPSL ; $libIGCM ; $libIGCM_SX ; $SUBMIT_DIR ; $REBUILD_DIR ; $RebuildFromArchive ; $POST_DIR ; $DateBegin ; $PeriodDateBegin ; $PeriodDateEnd ; $NbRebuildDir ; $StandAlone ; $RESOL_ATM ; $RESOL_OCE ; $RESOL_ICE ; $RESOL_MBG ; $RESOL_SRF ; $RESOL_SBG ; $MASTER
[108]63#-Q- aix6 # @ queue
[386]64#-Q- ulam #!/bin/ksh
65#-Q- ulam #######################
66#-Q- ulam ##   VARGAS   IDRIS  ##
67#-Q- ulam #######################
68#-Q- ulam # Temps Elapsed max. d'une requete hh:mm:ss
[500]69#-Q- ulam # @ wall_clock_limit = 10:00:00
[386]70#-Q- ulam # Nom du travail LoadLeveler
71#-Q- ulam # @ job_name   = REBUILDWRK
72#-Q- ulam # Fichier de sortie standard du travail
73#-Q- ulam # @ output     = $(job_name).$(jobid)
74#-Q- ulam # Fichier de sortie d'erreur du travail
75#-Q- ulam # @ error      =  $(job_name).$(jobid)
76#-Q- ulam # pour recevoir un mail en cas de depassement du temps Elapsed (ou autre pb.)
77#-Q- ulam # @ notification = error
[387]78#-Q- ulam # @ environment  = $DEBUG_debug ; $MODIPSL ; $libIGCM ; $libIGCM_SX ; $SUBMIT_DIR ; $REBUILD_DIR ; $RebuildFromArchive ; $POST_DIR ; $DateBegin ; $PeriodDateBegin ; $PeriodDateEnd ; $NbRebuildDir ; $StandAlone ; $RESOL_ATM ; $RESOL_OCE ; $RESOL_ICE ; $RESOL_MBG ; $RESOL_SRF ; $RESOL_SBG ; $MASTER
[386]79#-Q- ulam # @ queue
[108]80#-Q- sx8mercure #!/bin/ksh
81#-Q- sx8mercure ######################
82#-Q- sx8mercure ## SX8MERCURE   CEA ##
83#-Q- sx8mercure ######################
84#-Q- sx8mercure #PBS -N REBUILDWRK           # Nom du job
85#-Q- sx8mercure #PBS -j o                    # regroupement des stdout et stderr
86#-Q- sx8mercure #PBS -S /usr/bin/ksh         # shell de soumission
87#-Q- sx8mercure #PBS -l memsz_job=1gb        # Limite memoire a 1 Go
88#-Q- sx8mercure #PBS -l cputim_job=24:00:00  # Limite temps a 1 heures
[299]89#-Q- sx8mercure #PBS -q scalaire
[640]90#-Q- sx8mercure #PBS -r n
[172]91#-Q- sx9mercure #!/bin/ksh
92#-Q- sx9mercure ######################
[616]93#-Q- sx9mercure ## SX9MERCURE  CCRT ##
[172]94#-Q- sx9mercure ######################
[616]95#-Q- sx9mercure #PBS -N REBUILDWRK           # Nom du job
96#-Q- sx9mercure #PBS -j o                    # regroupement des stdout et stderr
97#-Q- sx9mercure #PBS -S /usr/bin/ksh         # shell de soumission
98#-Q- sx9mercure #PBS -l memsz_job=1gb        # Limite memoire a 1 Go
99#-Q- sx9mercure #PBS -l elapstim_req=24:00:00  # Limite temps a 1 heures
100#-Q- sx9mercure #PBS -q scalaire
[640]101#-Q- sx9mercure #PBS -r n
[222]102#-Q- titane #!/bin/ksh
103#-Q- titane ######################
[451]104#-Q- titane ## TITANE   CEA     ##
[222]105#-Q- titane ######################
106#-Q- titane #MSUB -r REBUILDWRK     # Nom du job               
[451]107#-Q- titane #MSUB -eo
[222]108#-Q- titane #MSUB -n 1              # Reservation du processus
109#-Q- titane #MSUB -T 86400          # Limite de temps elapsed du job
[478]110#-Q- titane #MSUB -q mono
[643]111#-Q- titane #MSUB -E '-rn'
[281]112#-Q- lxiv8 ######################
113#-Q- lxiv8 ## OBELIX      LSCE ##
114#-Q- lxiv8 ######################
115#-Q- lxiv8 #PBS -N REBUILDWRK
116#-Q- lxiv8 #PBS -m a
117#-Q- lxiv8 #PBS -j oe
118#-Q- lxiv8 #PBS -q medium
119#-Q- lxiv8 #PBS -o REBUILDWRK.$$
120#-Q- lxiv8 #PBS -S /bin/ksh
[108]121#-Q- default #!/bin/ksh
122#-Q- default ##################
123#-Q- default ## DEFAULT HOST ##
124#-Q- default ##################
125
[373]126#**************************************************************
127# Author: Sebastien Denvil
128# Contact: Sebastien.Denvil__at__ipsl.jussieu.fr
129# $Revision::                                          $ Revision of last commit
130# $Author::                                            $ Author of last commit
131# $Date::                                              $ Date of last commit
[108]132# IPSL (2006)
133#  This software is governed by the CeCILL licence see libIGCM/libIGCM_CeCILL.LIC
[373]134#
135#**************************************************************
[108]136
137#set -eu
138#set -vx
139
140date
141
142#-Q- sx8brodie export OMP_NUM_THREADS=1
143#-Q- aix6 export OMP_NUM_THREADS=1
[386]144#-Q- ulam export OMP_NUM_THREADS=1
[108]145
146########################################################################
147
148#D- Flag to determine if this job in a standalone mode
149#D- Default : value from AA_job if any
150StandAlone=${StandAlone:=true}
151
[554]152#D- Path to libIGCM
[206]153#D- Default : value from AA_job if any
[554]154# WARNING For StandAlone use : To run this script on some machine (ulam and cesium)
155# WARNING you must check MirrorlibIGCM variable in sys library.
156# WARNING If this variable is true, you must use libIGCM_POST path instead
157# WARNING of your running libIGCM directory.
[229]158libIGCM=${libIGCM:=::modipsl::/libIGCM}
[206]159
[327]160#-D- $hostname of the MASTER job when SUBMIT_DIR is not visible on postprocessing computer.
161MASTER=${MASTER:=mercure|titane|brodie|vargas}
162
[257]163#D- Do we rebuild parallel output from archive or from ${BIGDIR}
[206]164#D- Default : value from AA_job if any
[258]165RebuildFromArchive=${RebuildFromArchive:=false}
[257]166
167#D- Directory where files we need to rebuild are store
168#D- Default : value from AA_job if any
169#D- if RebuildFromArchive=true REBUILD_DIR=${DMFDIR}/IGCM_OUT/.../JobName/TMP
170#D- example : /dmnfs09/cont003/p86denv/IGCM_OUT/IPSLCM5/CM5PIRC7/TMP
171#D- if RebuildFromArchive=false REBUILD_DIR=${BIGDIR}/REBUILD/TagName/JobName/
172#D- example : /scratch/cont003/p86denv/REBUILD/IPSLCM5/SCAL-NEW
[206]173REBUILD_DIR=${REBUILD_DIR:=/path/to/your/TMP/REBUILD/FILES}
174
175#D- How many directory to rebuild we have to consider
176#D- Default : value from AA_job if any
[229]177NbRebuildDir=${NbRebuildDir:=1000}
[206]178
179#D- Suffix date we will use to determine which directory to rebuild
180#D- We will rebuild NbRebuildDir before and including PeriodDateBegin
181#D- Default : value from AA_job if any
[419]182LastPeriodForRebuild=${LastPeriodForRebuild:=${PeriodDateBegin:=18901201}}
[206]183
[108]184#D- Flag to determine atlas job's output directory
185#D- Default : value from libIGCM_post.ksh if any
186POST_DIR=${POST_DIR:=${PBS_O_WORKDIR}}
187
[327]188#-D- libIGCM_SX contains libIGCM on Master computer. Required on some center. Always OK.
189libIGCM_SX=${libIGCM_SX:=::modipsl::/libIGCM}
190
[108]191#D- Increased verbosity (1, 2, 3)
192#D- Default : value from AA_job if any
193Verbosity=${Verbosity:=3}
194
195#D- Low level debug : to bypass lib test checks and stack construction
196#D- Default : value from AA_job if any
197DEBUG_debug=${DEBUG_debug:=false}
198
199#D- TEMPORARY Flag to determine atmospheric resolution
200#D- Default : value from atmospheric driver if any
[135]201RESOL_ATM=${RESOL_ATM:=ALL}
[108]202
203#D- TEMPORARY Flag to determine ocean resolution
204#D- Default : value from ocean driver if any
205RESOL_OCE=${RESOL_OCE:=ORCA2}
206
207#D- TEMPORARY Flag to determine ice resolution
208#D- Default : value from ice driver if any
209RESOL_ICE=${RESOL_ICE:=ORCA2}
210
[196]211#D- TEMPORARY Flag to determine biogeochemistry resolution
212#D- Default : value from ice driver if any
[178]213RESOL_MBG=${RESOL_MBG:=ORCA2}
214
[108]215#D- Flag to determine surface resolution
216#D- Default : value from surface driver if any
[213]217RESOL_SRF=ALL
[108]218
[213]219#D- Flag to determine surface resolution
220#D- Default : value from surface driver if any
221RESOL_SBG=ALL
[207]222
[108]223########################################################################
224
225. ${libIGCM}/libIGCM_debug/libIGCM_debug.ksh
226      ( ${DEBUG_debug} ) && IGCM_debug_Check
227. ${libIGCM}/libIGCM_card/libIGCM_card.ksh
228     ( ${DEBUG_debug} ) && IGCM_card_Check
229. ${libIGCM}/libIGCM_date/libIGCM_date.ksh
230     ( ${DEBUG_debug} ) && IGCM_date_Check
231#-------
232. ${libIGCM}/libIGCM_sys/libIGCM_sys.ksh
233. ${libIGCM}/libIGCM_post/libIGCM_post.ksh
234
235########################################################################
236
237#set -vx
238
[202]239RUN_DIR=${RUN_DIR_PATH}
240IGCM_sys_MkdirWork ${RUN_DIR}
241IGCM_sys_Cd ${RUN_DIR}
[436]242
243# ------------------------------------------------------------------
244# Test if all was right before proceeding further
245# ------------------------------------------------------------------
246IGCM_debug_Verif_Exit_Post
247
[202]248#
[236]249if [ ${RebuildFromArchive} = true ] ; then
250    ListAllRebuildDir=$( IGCM_sys_RshArchive ls -d ${REBUILD_DIR}/REBUILD_* | grep -B $(( ${NbRebuildDir} -1 )) ${LastPeriodForRebuild} )
251else
252    ListAllRebuildDir=$( IGCM_sys_RshMaster ls -d ${REBUILD_DIR}/REBUILD_* | grep -B $(( ${NbRebuildDir} -1 )) ${LastPeriodForRebuild} )
253fi
[157]254#
[236]255
[108]256for directory in ${ListAllRebuildDir} ; do
257    #
[236]258    if [ ${RebuildFromArchive} = true ] ; then
259        IGCM_sys_Get_Dir ${directory} ${RUN_DIR}
260    else
261        IGCM_sys_Get_Master ${directory} ${RUN_DIR}
262    fi
[196]263    #
[108]264    IGCM_sys_Cd ${RUN_DIR}/$( basename ${directory} )
265
266    # --------------------------------------------------------------------
267    # Source function include in the REBUILD ksh and rebuild
268    # --------------------------------------------------------------------
269    . ${RUN_DIR}/$( basename ${directory} )/rebuild.ksh
270    IGCM_FlushRebuild
271    #
272    IGCM_sys_Cd ${RUN_DIR}
[147]273    # Clean Up
[328]274    # local clean up
[330]275    IGCM_sys_Rm -rf $( basename ${directory} )
[328]276    # remote clean up
[236]277    if [ ${RebuildFromArchive} = true ] ; then
278        IGCM_sys_RshArchive rm -rf ${directory}
279    else
[320]280        IGCM_sys_RshMaster rm -rf ${directory}
[236]281    fi
[108]282done
[203]283
[590]284# Clean RUN_DIR_PATH (necessary for cesium and titane only)
[203]285IGCM_sys_RmRunDir -Rf ${RUN_DIR_PATH}
[590]286
287date
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