[622] | 1 | #-Q- curie ###################### |
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| 2 | #-Q- curie ## CURIE TGCC/CEA ## |
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| 3 | #-Q- curie ###################### |
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[837] | 4 | #-Q- curie #MSUB -r REBUILDWRK # Nom du job |
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[622] | 5 | #-Q- curie #MSUB -eo |
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| 6 | #-Q- curie #MSUB -n 1 # Reservation du processus |
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[880] | 7 | #-Q- curie #MSUB -T 36000 # Limite de temps elapsed du job |
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[741] | 8 | #-Q- curie #MSUB -q xlarge |
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[704] | 9 | #-Q- curie #MSUB -Q normal |
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[837] | 10 | #-Q- curie #MSUB -A ::default_project:: |
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[681] | 11 | #-Q- curie set +x |
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[770] | 12 | #-Q- ada #!/bin/ksh |
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| 13 | #-Q- ada ####################### |
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[929] | 14 | #-Q- ada ## ADA IDRIS ## |
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[770] | 15 | #-Q- ada ####################### |
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[848] | 16 | #-Q- ada # @ job_type = serial |
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| 17 | #-Q- ada # @ requirements = (Feature == "prepost") |
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[770] | 18 | #-Q- ada # Temps Elapsed max. d'une requete hh:mm:ss |
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| 19 | #-Q- ada # @ wall_clock_limit = 10:00:00 |
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| 20 | #-Q- ada # Nom du travail LoadLeveler |
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| 21 | #-Q- ada # @ job_name = REBUILDWRK |
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| 22 | #-Q- ada # Fichier de sortie standard du travail |
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| 23 | #-Q- ada # @ output = $(job_name).$(jobid) |
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| 24 | #-Q- ada # Fichier de sortie d'erreur du travail |
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| 25 | #-Q- ada # @ error = $(job_name).$(jobid) |
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| 26 | #-Q- ada # pour recevoir un mail en cas de depassement du temps Elapsed (ou autre pb.) |
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| 27 | #-Q- ada # @ notification = error |
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| 28 | #-Q- ada # @ environment = $DEBUG_debug ; $MODIPSL ; $libIGCM ; $libIGCM_SX ; $SUBMIT_DIR ; $REBUILD_DIR ; $RebuildFromArchive ; $POST_DIR ; $DateBegin ; $PeriodDateBegin ; $PeriodDateEnd ; $NbRebuildDir ; $StandAlone ; $RESOL_ATM ; $RESOL_OCE ; $RESOL_ICE ; $RESOL_MBG ; $RESOL_SRF ; $RESOL_SBG ; $MASTER |
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| 29 | #-Q- ada # @ queue |
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[281] | 30 | #-Q- lxiv8 ###################### |
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| 31 | #-Q- lxiv8 ## OBELIX LSCE ## |
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| 32 | #-Q- lxiv8 ###################### |
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| 33 | #-Q- lxiv8 #PBS -N REBUILDWRK |
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| 34 | #-Q- lxiv8 #PBS -m a |
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| 35 | #-Q- lxiv8 #PBS -j oe |
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| 36 | #-Q- lxiv8 #PBS -q medium |
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| 37 | #-Q- lxiv8 #PBS -o REBUILDWRK.$$ |
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| 38 | #-Q- lxiv8 #PBS -S /bin/ksh |
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[108] | 39 | #-Q- default #!/bin/ksh |
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| 40 | #-Q- default ################## |
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| 41 | #-Q- default ## DEFAULT HOST ## |
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| 42 | #-Q- default ################## |
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| 43 | |
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[373] | 44 | #************************************************************** |
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| 45 | # Author: Sebastien Denvil |
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| 46 | # Contact: Sebastien.Denvil__at__ipsl.jussieu.fr |
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| 47 | # $Revision:: $ Revision of last commit |
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| 48 | # $Author:: $ Author of last commit |
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| 49 | # $Date:: $ Date of last commit |
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[108] | 50 | # IPSL (2006) |
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| 51 | # This software is governed by the CeCILL licence see libIGCM/libIGCM_CeCILL.LIC |
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[373] | 52 | # |
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| 53 | #************************************************************** |
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[108] | 54 | |
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| 55 | #set -eu |
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| 56 | #set -vx |
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| 57 | |
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| 58 | date |
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| 59 | |
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[770] | 60 | #-Q- ada export OMP_NUM_THREADS=1 |
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[108] | 61 | |
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[712] | 62 | #D- Task type (computing or post-processing) |
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| 63 | TaskType=post-processing |
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| 64 | |
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[108] | 65 | ######################################################################## |
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| 66 | |
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| 67 | #D- Flag to determine if this job in a standalone mode |
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| 68 | #D- Default : value from AA_job if any |
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| 69 | StandAlone=${StandAlone:=true} |
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| 70 | |
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[554] | 71 | #D- Path to libIGCM |
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[206] | 72 | #D- Default : value from AA_job if any |
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[554] | 73 | # WARNING For StandAlone use : To run this script on some machine (ulam and cesium) |
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| 74 | # WARNING you must check MirrorlibIGCM variable in sys library. |
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| 75 | # WARNING If this variable is true, you must use libIGCM_POST path instead |
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| 76 | # WARNING of your running libIGCM directory. |
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[229] | 77 | libIGCM=${libIGCM:=::modipsl::/libIGCM} |
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[206] | 78 | |
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[327] | 79 | #-D- $hostname of the MASTER job when SUBMIT_DIR is not visible on postprocessing computer. |
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[928] | 80 | MASTER=${MASTER:=ada|curie} |
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[327] | 81 | |
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[257] | 82 | #D- Do we rebuild parallel output from archive or from ${BIGDIR} |
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[206] | 83 | #D- Default : value from AA_job if any |
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[258] | 84 | RebuildFromArchive=${RebuildFromArchive:=false} |
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[257] | 85 | |
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[906] | 86 | #D- Directory where files we need to rebuild are store |
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[257] | 87 | #D- Default : value from AA_job if any |
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| 88 | #D- if RebuildFromArchive=true REBUILD_DIR=${DMFDIR}/IGCM_OUT/.../JobName/TMP |
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| 89 | #D- example : /dmnfs09/cont003/p86denv/IGCM_OUT/IPSLCM5/CM5PIRC7/TMP |
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| 90 | #D- if RebuildFromArchive=false REBUILD_DIR=${BIGDIR}/REBUILD/TagName/JobName/ |
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| 91 | #D- example : /scratch/cont003/p86denv/REBUILD/IPSLCM5/SCAL-NEW |
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[206] | 92 | REBUILD_DIR=${REBUILD_DIR:=/path/to/your/TMP/REBUILD/FILES} |
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| 93 | |
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| 94 | #D- How many directory to rebuild we have to consider |
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| 95 | #D- Default : value from AA_job if any |
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[229] | 96 | NbRebuildDir=${NbRebuildDir:=1000} |
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[206] | 97 | |
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| 98 | #D- Suffix date we will use to determine which directory to rebuild |
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| 99 | #D- We will rebuild NbRebuildDir before and including PeriodDateBegin |
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| 100 | #D- Default : value from AA_job if any |
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[419] | 101 | LastPeriodForRebuild=${LastPeriodForRebuild:=${PeriodDateBegin:=18901201}} |
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[206] | 102 | |
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[108] | 103 | #D- Flag to determine atlas job's output directory |
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| 104 | #D- Default : value from libIGCM_post.ksh if any |
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| 105 | POST_DIR=${POST_DIR:=${PBS_O_WORKDIR}} |
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| 106 | |
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[327] | 107 | #-D- libIGCM_SX contains libIGCM on Master computer. Required on some center. Always OK. |
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| 108 | libIGCM_SX=${libIGCM_SX:=::modipsl::/libIGCM} |
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| 109 | |
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[108] | 110 | #D- Increased verbosity (1, 2, 3) |
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| 111 | #D- Default : value from AA_job if any |
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| 112 | Verbosity=${Verbosity:=3} |
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| 113 | |
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| 114 | #D- Low level debug : to bypass lib test checks and stack construction |
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| 115 | #D- Default : value from AA_job if any |
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| 116 | DEBUG_debug=${DEBUG_debug:=false} |
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| 117 | |
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| 118 | #D- TEMPORARY Flag to determine atmospheric resolution |
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| 119 | #D- Default : value from atmospheric driver if any |
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[135] | 120 | RESOL_ATM=${RESOL_ATM:=ALL} |
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[108] | 121 | |
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| 122 | #D- TEMPORARY Flag to determine ocean resolution |
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| 123 | #D- Default : value from ocean driver if any |
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| 124 | RESOL_OCE=${RESOL_OCE:=ORCA2} |
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| 125 | |
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| 126 | #D- TEMPORARY Flag to determine ice resolution |
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| 127 | #D- Default : value from ice driver if any |
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| 128 | RESOL_ICE=${RESOL_ICE:=ORCA2} |
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| 129 | |
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[196] | 130 | #D- TEMPORARY Flag to determine biogeochemistry resolution |
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| 131 | #D- Default : value from ice driver if any |
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[178] | 132 | RESOL_MBG=${RESOL_MBG:=ORCA2} |
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| 133 | |
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[108] | 134 | #D- Flag to determine surface resolution |
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| 135 | #D- Default : value from surface driver if any |
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[213] | 136 | RESOL_SRF=ALL |
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[108] | 137 | |
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[213] | 138 | #D- Flag to determine surface resolution |
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| 139 | #D- Default : value from surface driver if any |
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| 140 | RESOL_SBG=ALL |
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[207] | 141 | |
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[108] | 142 | ######################################################################## |
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| 143 | |
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| 144 | . ${libIGCM}/libIGCM_debug/libIGCM_debug.ksh |
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| 145 | . ${libIGCM}/libIGCM_card/libIGCM_card.ksh |
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| 146 | . ${libIGCM}/libIGCM_date/libIGCM_date.ksh |
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| 147 | #------- |
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| 148 | . ${libIGCM}/libIGCM_sys/libIGCM_sys.ksh |
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| 149 | . ${libIGCM}/libIGCM_post/libIGCM_post.ksh |
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[832] | 150 | #------- |
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| 151 | ( ${DEBUG_debug} ) && IGCM_debug_Check |
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| 152 | ( ${DEBUG_debug} ) && IGCM_card_Check |
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| 153 | ( ${DEBUG_debug} ) && IGCM_date_Check |
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[108] | 154 | |
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| 155 | ######################################################################## |
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| 156 | |
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| 157 | #set -vx |
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| 158 | |
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[202] | 159 | RUN_DIR=${RUN_DIR_PATH} |
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| 160 | IGCM_sys_MkdirWork ${RUN_DIR} |
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| 161 | IGCM_sys_Cd ${RUN_DIR} |
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[436] | 162 | |
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| 163 | # ------------------------------------------------------------------ |
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| 164 | # Test if all was right before proceeding further |
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| 165 | # ------------------------------------------------------------------ |
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| 166 | IGCM_debug_Verif_Exit_Post |
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| 167 | |
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[202] | 168 | # |
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[236] | 169 | if [ ${RebuildFromArchive} = true ] ; then |
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[785] | 170 | ListAllRebuildDir=$( IGCM_sys_RshArchive ls -d ${REBUILD_DIR}/REBUILD_* | grep -B $(( ${NbRebuildDir} -1 )) ${LastPeriodForRebuild} ) |
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[236] | 171 | else |
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[785] | 172 | ListAllRebuildDir=$( IGCM_sys_RshMaster ls -d ${REBUILD_DIR}/REBUILD_* | grep -B $(( ${NbRebuildDir} -1 )) ${LastPeriodForRebuild} ) |
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[236] | 173 | fi |
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[157] | 174 | # |
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[236] | 175 | |
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[108] | 176 | for directory in ${ListAllRebuildDir} ; do |
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[785] | 177 | # |
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| 178 | if [ ${RebuildFromArchive} = true ] ; then |
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| 179 | IGCM_sys_Get_Dir ${directory} ${RUN_DIR} |
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| 180 | else |
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| 181 | IGCM_sys_Get_Master ${directory} ${RUN_DIR} |
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| 182 | fi |
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| 183 | # |
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| 184 | IGCM_sys_Cd ${RUN_DIR}/$( basename ${directory} ) |
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[108] | 185 | |
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[785] | 186 | # -------------------------------------------------------------------- |
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| 187 | # Source function include in the REBUILD ksh and rebuild |
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| 188 | # -------------------------------------------------------------------- |
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| 189 | . ${RUN_DIR}/$( basename ${directory} )/rebuild.ksh |
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| 190 | IGCM_FlushRebuild |
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| 191 | # |
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| 192 | IGCM_sys_Cd ${RUN_DIR} |
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| 193 | # Clean Up |
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| 194 | # local clean up |
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| 195 | IGCM_sys_Rm -rf $( basename ${directory} ) |
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| 196 | # remote clean up |
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| 197 | if [ ${RebuildFromArchive} = true ] ; then |
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| 198 | IGCM_sys_RshArchive rm -rf ${directory} |
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| 199 | else |
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| 200 | IGCM_sys_RshMaster rm -rf ${directory} |
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| 201 | fi |
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[108] | 202 | done |
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[203] | 203 | |
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[590] | 204 | # Clean RUN_DIR_PATH (necessary for cesium and titane only) |
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[203] | 205 | IGCM_sys_RmRunDir -Rf ${RUN_DIR_PATH} |
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[590] | 206 | |
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| 207 | date |
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