source: trunk/libIGCM/AA_rebuild_fromWorkdir @ 377

#-Q- cesium #!/bin/ksh
#-Q- cesium ######################
#-Q- cesium ## CESIUM   CEA ##
#-Q- cesium ######################
#-Q- cesium #MSUB -r REBUILDWRK     # Nom du job                
#-Q- cesium #MSUB -N 1              # Reservation du noeud
#-Q- cesium #MSUB -n 1              # Reservation du processus
#-Q- cesium #MSUB -T 86400          # Limite de temps elapsed du job
#-Q- cesium #MSUB -E "-j o"
#-Q- cesium #MSUB -E "-S /bin/ksh"
#-Q- platine #!/usr/bin/ksh
#-Q- platine ###################
#-Q- platine ## PLATINE   CEA ##
#-Q- platine ###################
#-Q- platine #BSUB -J REBUILDWRK             # Nom du job
#-Q- platine #BSUB -N                        # message a la fin du job
#-Q- platine #BSUB -n 1                      # reservation des processeurs pour le job
#-Q- platine #BSUB -W 4:00                   # Limite temps
#-Q- platine #BSUB -q post                   # Passage en queue post
#-Q- sx8brodie #!/bin/ksh
#-Q- sx8brodie #######################
#-Q- sx8brodie ## SX8BRODIE   IDRIS ##
#-Q- sx8brodie #######################
#-Q- sx8brodie # Temps Elapsed max. d'une requete hh:mm:ss
#-Q- sx8brodie # @ wall_clock_limit = 20:00:00
#-Q- sx8brodie # Nom du travail LoadLeveler
#-Q- sx8brodie # @ job_name   = REBUILDWRK
#-Q- sx8brodie # Fichier de sortie standard du travail       
#-Q- sx8brodie # @ output     = $(job_name).$(jobid)
#-Q- sx8brodie # Fichier de sortie d'erreur du travail
#-Q- sx8brodie # @ error      =  $(job_name).$(jobid)
#-Q- sx8brodie # pour recevoir un mail en cas de depassement du temps Elapsed (ou autre pb.)
#-Q- sx8brodie # @ notification = error
#-Q- sx8brodie # @ environment  = $DEBUG_debug ; $MODIPSL ; $libIGCM ; $libIGCM_SX ; $SUBMIT_DIR ; $REBUILD_DIR ; $RebuildFromArchive ; $POST_DIR ; $DateBegin ; $PeriodDateBegin ; $PeriodDateEnd ; $NbRebuildDir ; $StandAlone ; $RESOL_ATM ; $RESOL_OCE ; $RESOL_ICE ; $RESOL_MBG ; $RESOL_SRF ; $RESOL_SBG ; $MASTER ; $RebuildFromArchive ; $config_UserChoices_JobName ; $R_SAVE
#-Q- sx8brodie # @ queue
#-Q- aix6 #!/bin/ksh
#-Q- aix6 #######################
#-Q- aix6 ##   VARGAS   IDRIS  ##
#-Q- aix6 #######################
#-Q- aix6 # @ class = archive
#-Q- aix6 # Temps Elapsed max. d'une requete hh:mm:ss
#-Q- aix6 # @ wall_clock_limit = 20:00:00
#-Q- aix6 # Nom du travail LoadLeveler
#-Q- aix6 # @ job_name   = REBUILDWRK
#-Q- aix6 # Fichier de sortie standard du travail
#-Q- aix6 # @ output     = $(job_name).$(jobid)
#-Q- aix6 # Fichier de sortie d'erreur du travail
#-Q- aix6 # @ error      =  $(job_name).$(jobid)
#-Q- aix6 # pour recevoir un mail en cas de depassement du temps Elapsed (ou autre pb.)
#-Q- aix6 # @ notification = error
#-Q- aix6 # @ environment  = $DEBUG_debug ; $MODIPSL ; $libIGCM ; $libIGCM_SX ; $SUBMIT_DIR ; $REBUILD_DIR ; $RebuildFromArchive ; $POST_DIR ; $DateBegin ; $PeriodDateBegin ; $PeriodDateEnd ; $NbRebuildDir ; $StandAlone ; $RESOL_ATM ; $RESOL_OCE ; $RESOL_ICE ; $RESOL_MBG ; $RESOL_SRF ; $RESOL_SBG ; $MASTER ; $RebuildFromArchive ; $config_UserChoices_JobName ; $R_SAVE
#-Q- aix6 # @ queue
#-Q- sx8mercure #!/bin/ksh
#-Q- sx8mercure ######################
#-Q- sx8mercure ## SX8MERCURE   CEA ##
#-Q- sx8mercure ######################
#-Q- sx8mercure #PBS -N REBUILDWRK           # Nom du job
#-Q- sx8mercure #PBS -j o                    # regroupement des stdout et stderr
#-Q- sx8mercure #PBS -S /usr/bin/ksh         # shell de soumission
#-Q- sx8mercure #PBS -l memsz_job=1gb        # Limite memoire a 1 Go
#-Q- sx8mercure #PBS -l cputim_job=24:00:00  # Limite temps a 1 heures
#-Q- sx8mercure #PBS -q scalaire
#-Q- sx9mercure #!/bin/ksh
#-Q- sx9mercure ######################
#-Q- sx9mercure ## CESIUM   CEA ##
#-Q- sx9mercure ######################
#-Q- sx9mercure #MSUB -r REBUILDWRK     # Nom du job                
#-Q- sx9mercure #MSUB -N 1              # Reservation du noeud
#-Q- sx9mercure #MSUB -n 1              # Reservation du processus
#-Q- sx9mercure #MSUB -T 86400          # Limite de temps elapsed du job
#-Q- sx9mercure #MSUB -E "-j o"
#-Q- sx9mercure #MSUB -E "-S /bin/ksh"
#-Q- titane #!/bin/ksh
#-Q- titane ######################
#-Q- titane ## TITANE   CEA ##
#-Q- titane ######################
#-Q- titane #MSUB -r REBUILDWRK     # Nom du job                
#-Q- titane #MSUB -N 1              # Reservation du noeud
#-Q- titane #MSUB -n 1              # Reservation du processus
#-Q- titane #MSUB -T 86400          # Limite de temps elapsed du job
#-Q- titane #MSUB -E "-j o"
#-Q- titane #MSUB -E "-S /bin/ksh"
#-Q- titane ##MSUB -e nco.out        # Sortie standard
#-Q- titane ##MSUB -o nco.out        # Sortie standard
#-Q- lxiv8 ######################
#-Q- lxiv8 ## OBELIX      LSCE ##
#-Q- lxiv8 ######################
#-Q- lxiv8 #PBS -N REBUILDWRK
#-Q- lxiv8 #PBS -m a
#-Q- lxiv8 #PBS -j oe
#-Q- lxiv8 #PBS -q medium
#-Q- lxiv8 #PBS -o REBUILDWRK.$$
#-Q- lxiv8 #PBS -S /bin/ksh
#-Q- default #!/bin/ksh
#-Q- default ##################
#-Q- default ## DEFAULT HOST ##
#-Q- default ##################

#**************************************************************
# Author: Sebastien Denvil
# Contact: Sebastien.Denvil__at__ipsl.jussieu.fr
# $Revision::                                          $ Revision of last commit
# $Author::                                            $ Author of last commit
# $Date::                                              $ Date of last commit
# IPSL (2006)
#  This software is governed by the CeCILL licence see libIGCM/libIGCM_CeCILL.LIC
#
#**************************************************************

#set -eu
#set -vx

date

#-Q- sx8brodie export OMP_NUM_THREADS=1
#-Q- aix6 export OMP_NUM_THREADS=1

########################################################################

#D- Flag to determine if this job in a standalone mode
#D- Default : value from AA_job if any
StandAlone=${StandAlone:=true}

#D- Low level debug : to bypass lib test checks and stack construction
#D- Default : value from AA_job if any
libIGCM=${libIGCM:=::modipsl::/libIGCM}
# WARNING for StandAlone used : To run this script on some machine,
# you must check MirrorlibIGCM variable in sys library.
# If this variable is true, you must use libIGCM_POST path instead
# of your running libIGCM directory.

#-D- $hostname of the MASTER job when SUBMIT_DIR is not visible on postprocessing computer.
MASTER=${MASTER:=mercure|titane|brodie|vargas}

#D- Do we rebuild parallel output from archive or from ${BIGDIR}
#D- Default : value from AA_job if any
RebuildFromArchive=${RebuildFromArchive:=false}

#D- Directory where files we need to rebuild are store 
#D- Default : value from AA_job if any
#D- if RebuildFromArchive=true REBUILD_DIR=${DMFDIR}/IGCM_OUT/.../JobName/TMP
#D- example : /dmnfs09/cont003/p86denv/IGCM_OUT/IPSLCM5/CM5PIRC7/TMP
#D- if RebuildFromArchive=false REBUILD_DIR=${BIGDIR}/REBUILD/TagName/JobName/
#D- example : /scratch/cont003/p86denv/REBUILD/IPSLCM5/SCAL-NEW
REBUILD_DIR=${REBUILD_DIR:=/path/to/your/TMP/REBUILD/FILES}

#D- How many directory to rebuild we have to consider
#D- Default : value from AA_job if any
NbRebuildDir=${NbRebuildDir:=1000}

#D- Suffix date we will use to determine which directory to rebuild
#D- We will rebuild NbRebuildDir before and including PeriodDateBegin
#D- Default : value from AA_job if any
LastPeriodForRebuild=${PeriodDateBegin:=18901201}

#D- Name of the job to work in a standalone mode (needed for mask patch)
#D- Default : value from config.card if any
config_UserChoices_JobName=${config_UserChoices_JobName:=name_of_the_job}

#D- Directory where output data are stored (needed in standalone mode for mask patch)
#D- Default : value from AA_job if any
R_SAVE=${R_SAVE:=/path/to/your/ARCHIVE/FILES}

#D- Flag to determine atlas job's output directory
#D- Default : value from libIGCM_post.ksh if any
POST_DIR=${POST_DIR:=${PBS_O_WORKDIR}}

#-D- libIGCM_SX contains libIGCM on Master computer. Required on some center. Always OK.
libIGCM_SX=${libIGCM_SX:=::modipsl::/libIGCM}

#D- Increased verbosity (1, 2, 3)
#D- Default : value from AA_job if any
Verbosity=${Verbosity:=3}

#D- Low level debug : to bypass lib test checks and stack construction
#D- Default : value from AA_job if any
DEBUG_debug=${DEBUG_debug:=false}

#D- TEMPORARY Flag to determine atmospheric resolution
#D- Default : value from atmospheric driver if any
RESOL_ATM=${RESOL_ATM:=ALL}

#D- TEMPORARY Flag to determine ocean resolution
#D- Default : value from ocean driver if any
RESOL_OCE=${RESOL_OCE:=ORCA2}

#D- TEMPORARY Flag to determine ice resolution
#D- Default : value from ice driver if any
RESOL_ICE=${RESOL_ICE:=ORCA2}

#D- TEMPORARY Flag to determine biogeochemistry resolution
#D- Default : value from ice driver if any
RESOL_MBG=${RESOL_MBG:=ORCA2}

#D- Flag to determine surface resolution
#D- Default : value from surface driver if any
RESOL_SRF=ALL

#D- Flag to determine surface resolution
#D- Default : value from surface driver if any
RESOL_SBG=ALL

########################################################################

. ${libIGCM}/libIGCM_debug/libIGCM_debug.ksh
      ( ${DEBUG_debug} ) && IGCM_debug_Check
. ${libIGCM}/libIGCM_card/libIGCM_card.ksh
     ( ${DEBUG_debug} ) && IGCM_card_Check
. ${libIGCM}/libIGCM_date/libIGCM_date.ksh
     ( ${DEBUG_debug} ) && IGCM_date_Check
#-------
. ${libIGCM}/libIGCM_sys/libIGCM_sys.ksh
. ${libIGCM}/libIGCM_post/libIGCM_post.ksh

########################################################################

#set -vx

RUN_DIR=${RUN_DIR_PATH}
IGCM_sys_MkdirWork ${RUN_DIR}
IGCM_sys_Cd ${RUN_DIR}
#
if [ ${RebuildFromArchive} = true ] ; then
    ListAllRebuildDir=$( IGCM_sys_RshArchive ls -d ${REBUILD_DIR}/REBUILD_* | grep -B $(( ${NbRebuildDir} -1 )) ${LastPeriodForRebuild} )
else
    ListAllRebuildDir=$( IGCM_sys_RshMaster ls -d ${REBUILD_DIR}/REBUILD_* | grep -B $(( ${NbRebuildDir} -1 )) ${LastPeriodForRebuild} )
fi
#

for directory in ${ListAllRebuildDir} ; do
    #
    if [ ${RebuildFromArchive} = true ] ; then
        IGCM_sys_Get_Dir ${directory} ${RUN_DIR}
    else
        IGCM_sys_Get_Master ${directory} ${RUN_DIR}
    fi
    #
    IGCM_sys_Cd ${RUN_DIR}/$( basename ${directory} )

    # --------------------------------------------------------------------
    # Source function include in the REBUILD ksh and rebuild
    # --------------------------------------------------------------------
    . ${RUN_DIR}/$( basename ${directory} )/rebuild.ksh
    IGCM_FlushRebuild
    #
    IGCM_sys_Cd ${RUN_DIR}
    # Clean Up
    # local clean up
    IGCM_sys_Rm -rf $( basename ${directory} )
    # remote clean up
    if [ ${RebuildFromArchive} = true ] ; then
        IGCM_sys_RshArchive rm -rf ${directory}
    else
        IGCM_sys_RshMaster rm -rf ${directory}
    fi
done

# Clean RUN_DIR_PATH (necessary for cesium only)
IGCM_sys_RmRunDir -Rf ${RUN_DIR_PATH}