source: trunk/libIGCM/AA_rebuild_fromWorkdir @ 423

Last change on this file since 423 was 423, checked in by sdipsl, 13 years ago
  • Vargas BIG_DIR was not set like the others.
  • Bug with AA_rebuild_fromWorkdir on vargas : we were submitting rebuild_fromWorkdir.job on ulam "archive class" who doesn't exist.
  • Property svn:keywords set to Revision Author Date
File size: 11.0 KB
Line 
1#-Q- cesium #!/bin/ksh
2#-Q- cesium ######################
3#-Q- cesium ## CESIUM   CEA ##
4#-Q- cesium ######################
5#-Q- cesium #MSUB -r REBUILDWRK     # Nom du job               
6#-Q- cesium #MSUB -N 1              # Reservation du noeud
7#-Q- cesium #MSUB -n 1              # Reservation du processus
8#-Q- cesium #MSUB -T 86400          # Limite de temps elapsed du job
9#-Q- cesium #MSUB -E "-j o"
10#-Q- cesium #MSUB -E "-S /bin/ksh"
11#-Q- platine #!/usr/bin/ksh
12#-Q- platine ###################
13#-Q- platine ## PLATINE   CEA ##
14#-Q- platine ###################
15#-Q- platine #BSUB -J REBUILDWRK             # Nom du job
16#-Q- platine #BSUB -N                        # message a la fin du job
17#-Q- platine #BSUB -n 1                      # reservation des processeurs pour le job
18#-Q- platine #BSUB -W 4:00                   # Limite temps
19#-Q- platine #BSUB -q post                   # Passage en queue post
20#-Q- sx8brodie #!/bin/ksh
21#-Q- sx8brodie #######################
22#-Q- sx8brodie ## SX8BRODIE   IDRIS ##
23#-Q- sx8brodie #######################
24#-Q- sx8brodie # Temps Elapsed max. d'une requete hh:mm:ss
25#-Q- sx8brodie # @ wall_clock_limit = 20:00:00
26#-Q- sx8brodie # Nom du travail LoadLeveler
27#-Q- sx8brodie # @ job_name   = REBUILDWRK
28#-Q- sx8brodie # Fichier de sortie standard du travail       
29#-Q- sx8brodie # @ output     = $(job_name).$(jobid)
30#-Q- sx8brodie # Fichier de sortie d'erreur du travail
31#-Q- sx8brodie # @ error      =  $(job_name).$(jobid)
32#-Q- sx8brodie # pour recevoir un mail en cas de depassement du temps Elapsed (ou autre pb.)
33#-Q- sx8brodie # @ notification = error
34#-Q- sx8brodie # @ environment  = $DEBUG_debug ; $MODIPSL ; $libIGCM ; $libIGCM_SX ; $SUBMIT_DIR ; $REBUILD_DIR ; $RebuildFromArchive ; $POST_DIR ; $DateBegin ; $PeriodDateBegin ; $PeriodDateEnd ; $NbRebuildDir ; $StandAlone ; $RESOL_ATM ; $RESOL_OCE ; $RESOL_ICE ; $RESOL_MBG ; $RESOL_SRF ; $RESOL_SBG ; $MASTER
35#-Q- sx8brodie # @ queue
36#-Q- aix6 #!/bin/ksh
37#-Q- aix6 #######################
38#-Q- aix6 ##   VARGAS   IDRIS  ##
39#-Q- aix6 #######################
40#-Q- aix6 # Temps Elapsed max. d'une requete hh:mm:ss
41#-Q- aix6 # @ wall_clock_limit = 20:00:00
42#-Q- aix6 # Nom du travail LoadLeveler
43#-Q- aix6 # @ job_name   = REBUILDWRK
44#-Q- aix6 # Fichier de sortie standard du travail
45#-Q- aix6 # @ output     = $(job_name).$(jobid)
46#-Q- aix6 # Fichier de sortie d'erreur du travail
47#-Q- aix6 # @ error      =  $(job_name).$(jobid)
48#-Q- aix6 # pour recevoir un mail en cas de depassement du temps Elapsed (ou autre pb.)
49#-Q- aix6 # @ notification = error
50#-Q- aix6 # @ environment  = $DEBUG_debug ; $MODIPSL ; $libIGCM ; $libIGCM_SX ; $SUBMIT_DIR ; $REBUILD_DIR ; $RebuildFromArchive ; $POST_DIR ; $DateBegin ; $PeriodDateBegin ; $PeriodDateEnd ; $NbRebuildDir ; $StandAlone ; $RESOL_ATM ; $RESOL_OCE ; $RESOL_ICE ; $RESOL_MBG ; $RESOL_SRF ; $RESOL_SBG ; $MASTER
51#-Q- aix6 # @ queue
52#-Q- ulam #!/bin/ksh
53#-Q- ulam #######################
54#-Q- ulam ##   VARGAS   IDRIS  ##
55#-Q- ulam #######################
56#-Q- ulam # Temps Elapsed max. d'une requete hh:mm:ss
57#-Q- ulam # @ wall_clock_limit = 20:00:00
58#-Q- ulam # Nom du travail LoadLeveler
59#-Q- ulam # @ job_name   = REBUILDWRK
60#-Q- ulam # Fichier de sortie standard du travail
61#-Q- ulam # @ output     = $(job_name).$(jobid)
62#-Q- ulam # Fichier de sortie d'erreur du travail
63#-Q- ulam # @ error      =  $(job_name).$(jobid)
64#-Q- ulam # pour recevoir un mail en cas de depassement du temps Elapsed (ou autre pb.)
65#-Q- ulam # @ notification = error
66#-Q- ulam # @ environment  = $DEBUG_debug ; $MODIPSL ; $libIGCM ; $libIGCM_SX ; $SUBMIT_DIR ; $REBUILD_DIR ; $RebuildFromArchive ; $POST_DIR ; $DateBegin ; $PeriodDateBegin ; $PeriodDateEnd ; $NbRebuildDir ; $StandAlone ; $RESOL_ATM ; $RESOL_OCE ; $RESOL_ICE ; $RESOL_MBG ; $RESOL_SRF ; $RESOL_SBG ; $MASTER
67#-Q- ulam # @ queue
68#-Q- sx8mercure #!/bin/ksh
69#-Q- sx8mercure ######################
70#-Q- sx8mercure ## SX8MERCURE   CEA ##
71#-Q- sx8mercure ######################
72#-Q- sx8mercure #PBS -N REBUILDWRK           # Nom du job
73#-Q- sx8mercure #PBS -j o                    # regroupement des stdout et stderr
74#-Q- sx8mercure #PBS -S /usr/bin/ksh         # shell de soumission
75#-Q- sx8mercure #PBS -l memsz_job=1gb        # Limite memoire a 1 Go
76#-Q- sx8mercure #PBS -l cputim_job=24:00:00  # Limite temps a 1 heures
77#-Q- sx8mercure #PBS -q scalaire
78#-Q- sx9mercure #!/bin/ksh
79#-Q- sx9mercure ######################
80#-Q- sx9mercure ## CESIUM   CEA ##
81#-Q- sx9mercure ######################
82#-Q- sx9mercure #MSUB -r REBUILDWRK     # Nom du job               
83#-Q- sx9mercure #MSUB -N 1              # Reservation du noeud
84#-Q- sx9mercure #MSUB -n 1              # Reservation du processus
85#-Q- sx9mercure #MSUB -T 86400          # Limite de temps elapsed du job
86#-Q- sx9mercure #MSUB -E "-j o"
87#-Q- sx9mercure #MSUB -E "-S /bin/ksh"
88#-Q- titane #!/bin/ksh
89#-Q- titane ######################
90#-Q- titane ## TITANE   CEA ##
91#-Q- titane ######################
92#-Q- titane #MSUB -r REBUILDWRK     # Nom du job               
93#-Q- titane #MSUB -N 1              # Reservation du noeud
94#-Q- titane #MSUB -n 1              # Reservation du processus
95#-Q- titane #MSUB -T 86400          # Limite de temps elapsed du job
96#-Q- titane #MSUB -E "-j o"
97#-Q- titane #MSUB -E "-S /bin/ksh"
98#-Q- titane ##MSUB -e nco.out        # Sortie standard
99#-Q- titane ##MSUB -o nco.out        # Sortie standard
100#-Q- lxiv8 ######################
101#-Q- lxiv8 ## OBELIX      LSCE ##
102#-Q- lxiv8 ######################
103#-Q- lxiv8 #PBS -N REBUILDWRK
104#-Q- lxiv8 #PBS -m a
105#-Q- lxiv8 #PBS -j oe
106#-Q- lxiv8 #PBS -q medium
107#-Q- lxiv8 #PBS -o REBUILDWRK.$$
108#-Q- lxiv8 #PBS -S /bin/ksh
109#-Q- default #!/bin/ksh
110#-Q- default ##################
111#-Q- default ## DEFAULT HOST ##
112#-Q- default ##################
113
114#**************************************************************
115# Author: Sebastien Denvil
116# Contact: Sebastien.Denvil__at__ipsl.jussieu.fr
117# $Revision::                                          $ Revision of last commit
118# $Author::                                            $ Author of last commit
119# $Date::                                              $ Date of last commit
120# IPSL (2006)
121#  This software is governed by the CeCILL licence see libIGCM/libIGCM_CeCILL.LIC
122#
123#**************************************************************
124
125#set -eu
126#set -vx
127
128date
129
130#-Q- sx8brodie export OMP_NUM_THREADS=1
131#-Q- aix6 export OMP_NUM_THREADS=1
132#-Q- ulam export OMP_NUM_THREADS=1
133
134########################################################################
135
136#D- Flag to determine if this job in a standalone mode
137#D- Default : value from AA_job if any
138StandAlone=${StandAlone:=true}
139
140#D- Low level debug : to bypass lib test checks and stack construction
141#D- Default : value from AA_job if any
142libIGCM=${libIGCM:=::modipsl::/libIGCM}
143# WARNING for StandAlone used : To run this script on some machine,
144# you must check MirrorlibIGCM variable in sys library.
145# If this variable is true, you must use libIGCM_POST path instead
146# of your running libIGCM directory.
147
148#-D- $hostname of the MASTER job when SUBMIT_DIR is not visible on postprocessing computer.
149MASTER=${MASTER:=mercure|titane|brodie|vargas}
150
151#D- Do we rebuild parallel output from archive or from ${BIGDIR}
152#D- Default : value from AA_job if any
153RebuildFromArchive=${RebuildFromArchive:=false}
154
155#D- Directory where files we need to rebuild are store
156#D- Default : value from AA_job if any
157#D- if RebuildFromArchive=true REBUILD_DIR=${DMFDIR}/IGCM_OUT/.../JobName/TMP
158#D- example : /dmnfs09/cont003/p86denv/IGCM_OUT/IPSLCM5/CM5PIRC7/TMP
159#D- if RebuildFromArchive=false REBUILD_DIR=${BIGDIR}/REBUILD/TagName/JobName/
160#D- example : /scratch/cont003/p86denv/REBUILD/IPSLCM5/SCAL-NEW
161REBUILD_DIR=${REBUILD_DIR:=/path/to/your/TMP/REBUILD/FILES}
162
163#D- How many directory to rebuild we have to consider
164#D- Default : value from AA_job if any
165NbRebuildDir=${NbRebuildDir:=1000}
166
167#D- Suffix date we will use to determine which directory to rebuild
168#D- We will rebuild NbRebuildDir before and including PeriodDateBegin
169#D- Default : value from AA_job if any
170LastPeriodForRebuild=${LastPeriodForRebuild:=${PeriodDateBegin:=18901201}}
171
172#D- Flag to determine atlas job's output directory
173#D- Default : value from libIGCM_post.ksh if any
174POST_DIR=${POST_DIR:=${PBS_O_WORKDIR}}
175
176#-D- libIGCM_SX contains libIGCM on Master computer. Required on some center. Always OK.
177libIGCM_SX=${libIGCM_SX:=::modipsl::/libIGCM}
178
179#D- Increased verbosity (1, 2, 3)
180#D- Default : value from AA_job if any
181Verbosity=${Verbosity:=3}
182
183#D- Low level debug : to bypass lib test checks and stack construction
184#D- Default : value from AA_job if any
185DEBUG_debug=${DEBUG_debug:=false}
186
187#D- TEMPORARY Flag to determine atmospheric resolution
188#D- Default : value from atmospheric driver if any
189RESOL_ATM=${RESOL_ATM:=ALL}
190
191#D- TEMPORARY Flag to determine ocean resolution
192#D- Default : value from ocean driver if any
193RESOL_OCE=${RESOL_OCE:=ORCA2}
194
195#D- TEMPORARY Flag to determine ice resolution
196#D- Default : value from ice driver if any
197RESOL_ICE=${RESOL_ICE:=ORCA2}
198
199#D- TEMPORARY Flag to determine biogeochemistry resolution
200#D- Default : value from ice driver if any
201RESOL_MBG=${RESOL_MBG:=ORCA2}
202
203#D- Flag to determine surface resolution
204#D- Default : value from surface driver if any
205RESOL_SRF=ALL
206
207#D- Flag to determine surface resolution
208#D- Default : value from surface driver if any
209RESOL_SBG=ALL
210
211########################################################################
212
213. ${libIGCM}/libIGCM_debug/libIGCM_debug.ksh
214      ( ${DEBUG_debug} ) && IGCM_debug_Check
215. ${libIGCM}/libIGCM_card/libIGCM_card.ksh
216     ( ${DEBUG_debug} ) && IGCM_card_Check
217. ${libIGCM}/libIGCM_date/libIGCM_date.ksh
218     ( ${DEBUG_debug} ) && IGCM_date_Check
219#-------
220. ${libIGCM}/libIGCM_sys/libIGCM_sys.ksh
221. ${libIGCM}/libIGCM_post/libIGCM_post.ksh
222
223########################################################################
224
225#set -vx
226
227RUN_DIR=${RUN_DIR_PATH}
228IGCM_sys_MkdirWork ${RUN_DIR}
229IGCM_sys_Cd ${RUN_DIR}
230#
231if [ ${RebuildFromArchive} = true ] ; then
232    ListAllRebuildDir=$( IGCM_sys_RshArchive ls -d ${REBUILD_DIR}/REBUILD_* | grep -B $(( ${NbRebuildDir} -1 )) ${LastPeriodForRebuild} )
233else
234    ListAllRebuildDir=$( IGCM_sys_RshMaster ls -d ${REBUILD_DIR}/REBUILD_* | grep -B $(( ${NbRebuildDir} -1 )) ${LastPeriodForRebuild} )
235fi
236#
237
238for directory in ${ListAllRebuildDir} ; do
239    #
240    if [ ${RebuildFromArchive} = true ] ; then
241        IGCM_sys_Get_Dir ${directory} ${RUN_DIR}
242    else
243        IGCM_sys_Get_Master ${directory} ${RUN_DIR}
244    fi
245    #
246    IGCM_sys_Cd ${RUN_DIR}/$( basename ${directory} )
247
248    # --------------------------------------------------------------------
249    # Source function include in the REBUILD ksh and rebuild
250    # --------------------------------------------------------------------
251    . ${RUN_DIR}/$( basename ${directory} )/rebuild.ksh
252    IGCM_FlushRebuild
253    #
254    IGCM_sys_Cd ${RUN_DIR}
255    # Clean Up
256    # local clean up
257    IGCM_sys_Rm -rf $( basename ${directory} )
258    # remote clean up
259    if [ ${RebuildFromArchive} = true ] ; then
260        IGCM_sys_RshArchive rm -rf ${directory}
261    else
262        IGCM_sys_RshMaster rm -rf ${directory}
263    fi
264done
265
266# Clean RUN_DIR_PATH (necessary for cesium only)
267IGCM_sys_RmRunDir -Rf ${RUN_DIR_PATH}
Note: See TracBrowser for help on using the repository browser.