source: trunk/libIGCM/AA_rebuild_fromWorkdir @ 763

Last change on this file since 763 was 758, checked in by mafoipsl, 11 years ago

On curie, delete #MSUB -E '--no-requeue' option. The system will requeue jobs automatically.
  • Property svn:keywords set to Revision Author Date
File size: 11.6 KB
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1#-Q- cesium #!/bin/ksh
2#-Q- cesium ######################
3#-Q- cesium ## CESIUM   CEA ##
4#-Q- cesium ######################
5#-Q- cesium #MSUB -r REBUILDWRK     # Nom du job               
6#-Q- cesium #MSUB -N 1              # Reservation du noeud
7#-Q- cesium #MSUB -n 1              # Reservation du processus
8#-Q- cesium #MSUB -T 86400          # Limite de temps elapsed du job
9#-Q- cesium #MSUB -E "-j o"
10#-Q- cesium #MSUB -E "-S /bin/ksh"
11#-Q- curie ######################
12#-Q- curie ## CURIE   TGCC/CEA ##
13#-Q- curie ######################
14#-Q- curie #MSUB -r REBUILDWRK     # Nom du job               
15#-Q- curie #MSUB -eo
16#-Q- curie #MSUB -n 1              # Reservation du processus
17#-Q- curie #MSUB -T 86400          # Limite de temps elapsed du job
18#-Q- curie #MSUB -q xlarge
19#-Q- curie #MSUB -Q normal
20#-Q- curie set +x
21#-Q- platine #!/usr/bin/ksh
22#-Q- platine ###################
23#-Q- platine ## PLATINE   CEA ##
24#-Q- platine ###################
25#-Q- platine #BSUB -J REBUILDWRK             # Nom du job
26#-Q- platine #BSUB -N                        # message a la fin du job
27#-Q- platine #BSUB -n 1                      # reservation des processeurs pour le job
28#-Q- platine #BSUB -W 4:00                   # Limite temps
29#-Q- platine #BSUB -q post                   # Passage en queue post
30#-Q- platine #BSUB -L /bin/ksh
31#-Q- sx8brodie #!/bin/ksh
32#-Q- sx8brodie #######################
33#-Q- sx8brodie ## SX8BRODIE   IDRIS ##
34#-Q- sx8brodie #######################
35#-Q- sx8brodie # Temps Elapsed max. d'une requete hh:mm:ss
36#-Q- sx8brodie # @ wall_clock_limit = 10:00:00
37#-Q- sx8brodie # Nom du travail LoadLeveler
38#-Q- sx8brodie # @ job_name   = REBUILDWRK
39#-Q- sx8brodie # Fichier de sortie standard du travail       
40#-Q- sx8brodie # @ output     = $(job_name).$(jobid)
41#-Q- sx8brodie # Fichier de sortie d'erreur du travail
42#-Q- sx8brodie # @ error      =  $(job_name).$(jobid)
43#-Q- sx8brodie # pour recevoir un mail en cas de depassement du temps Elapsed (ou autre pb.)
44#-Q- sx8brodie # @ notification = error
45#-Q- sx8brodie # @ environment  = $DEBUG_debug ; $MODIPSL ; $libIGCM ; $libIGCM_SX ; $SUBMIT_DIR ; $REBUILD_DIR ; $RebuildFromArchive ; $POST_DIR ; $DateBegin ; $PeriodDateBegin ; $PeriodDateEnd ; $NbRebuildDir ; $StandAlone ; $RESOL_ATM ; $RESOL_OCE ; $RESOL_ICE ; $RESOL_MBG ; $RESOL_SRF ; $RESOL_SBG ; $MASTER
46#-Q- sx8brodie # @ queue
47#-Q- aix6 #!/bin/ksh
48#-Q- aix6 #######################
49#-Q- aix6 ##   VARGAS   IDRIS  ##
50#-Q- aix6 #######################
51#-Q- aix6 # Temps Elapsed max. d'une requete hh:mm:ss
52#-Q- aix6 # @ wall_clock_limit = 10:00:00
53#-Q- aix6 # Nom du travail LoadLeveler
54#-Q- aix6 # @ job_name   = REBUILDWRK
55#-Q- aix6 # Fichier de sortie standard du travail
56#-Q- aix6 # @ output     = $(job_name).$(jobid)
57#-Q- aix6 # Fichier de sortie d'erreur du travail
58#-Q- aix6 # @ error      =  $(job_name).$(jobid)
59#-Q- aix6 # pour recevoir un mail en cas de depassement du temps Elapsed (ou autre pb.)
60#-Q- aix6 # @ notification = error
61#-Q- aix6 # @ environment  = $DEBUG_debug ; $MODIPSL ; $libIGCM ; $libIGCM_SX ; $SUBMIT_DIR ; $REBUILD_DIR ; $RebuildFromArchive ; $POST_DIR ; $DateBegin ; $PeriodDateBegin ; $PeriodDateEnd ; $NbRebuildDir ; $StandAlone ; $RESOL_ATM ; $RESOL_OCE ; $RESOL_ICE ; $RESOL_MBG ; $RESOL_SRF ; $RESOL_SBG ; $MASTER
62#-Q- aix6 # @ queue
63#-Q- ulam #!/bin/ksh
64#-Q- ulam #######################
65#-Q- ulam ##   VARGAS   IDRIS  ##
66#-Q- ulam #######################
67#-Q- ulam # Temps Elapsed max. d'une requete hh:mm:ss
68#-Q- ulam # @ wall_clock_limit = 10:00:00
69#-Q- ulam # Nom du travail LoadLeveler
70#-Q- ulam # @ job_name   = REBUILDWRK
71#-Q- ulam # Fichier de sortie standard du travail
72#-Q- ulam # @ output     = $(job_name).$(jobid)
73#-Q- ulam # Fichier de sortie d'erreur du travail
74#-Q- ulam # @ error      =  $(job_name).$(jobid)
75#-Q- ulam # pour recevoir un mail en cas de depassement du temps Elapsed (ou autre pb.)
76#-Q- ulam # @ notification = error
77#-Q- ulam # @ environment  = $DEBUG_debug ; $MODIPSL ; $libIGCM ; $libIGCM_SX ; $SUBMIT_DIR ; $REBUILD_DIR ; $RebuildFromArchive ; $POST_DIR ; $DateBegin ; $PeriodDateBegin ; $PeriodDateEnd ; $NbRebuildDir ; $StandAlone ; $RESOL_ATM ; $RESOL_OCE ; $RESOL_ICE ; $RESOL_MBG ; $RESOL_SRF ; $RESOL_SBG ; $MASTER
78#-Q- ulam # @ queue
79#-Q- sx8mercure #!/bin/ksh
80#-Q- sx8mercure ######################
81#-Q- sx8mercure ## SX8MERCURE   CEA ##
82#-Q- sx8mercure ######################
83#-Q- sx8mercure #PBS -N REBUILDWRK           # Nom du job
84#-Q- sx8mercure #PBS -j o                    # regroupement des stdout et stderr
85#-Q- sx8mercure #PBS -S /usr/bin/ksh         # shell de soumission
86#-Q- sx8mercure #PBS -l memsz_job=1gb        # Limite memoire a 1 Go
87#-Q- sx8mercure #PBS -l cputim_job=24:00:00  # Limite temps a 1 heures
88#-Q- sx8mercure #PBS -q scalaire
89#-Q- sx8mercure #PBS -r n
90#-Q- sx9mercure #!/bin/ksh
91#-Q- sx9mercure ######################
92#-Q- sx9mercure ## SX9MERCURE  CCRT ##
93#-Q- sx9mercure ######################
94#-Q- sx9mercure #PBS -N REBUILDWRK           # Nom du job
95#-Q- sx9mercure #PBS -j o                    # regroupement des stdout et stderr
96#-Q- sx9mercure #PBS -S /usr/bin/ksh         # shell de soumission
97#-Q- sx9mercure #PBS -l memsz_job=1gb        # Limite memoire a 1 Go
98#-Q- sx9mercure #PBS -l elapstim_req=24:00:00  # Limite temps a 1 heures
99#-Q- sx9mercure #PBS -q scalaire
100#-Q- sx9mercure #PBS -r n
101#-Q- titane #!/bin/ksh
102#-Q- titane ######################
103#-Q- titane ## TITANE   CEA     ##
104#-Q- titane ######################
105#-Q- titane #MSUB -r REBUILDWRK     # Nom du job               
106#-Q- titane #MSUB -eo
107#-Q- titane #MSUB -n 1              # Reservation du processus
108#-Q- titane #MSUB -T 86400          # Limite de temps elapsed du job
109#-Q- titane #MSUB -q mono
110#-Q- titane #MSUB -E '-rn'
111#-Q- lxiv8 ######################
112#-Q- lxiv8 ## OBELIX      LSCE ##
113#-Q- lxiv8 ######################
114#-Q- lxiv8 #PBS -N REBUILDWRK
115#-Q- lxiv8 #PBS -m a
116#-Q- lxiv8 #PBS -j oe
117#-Q- lxiv8 #PBS -q medium
118#-Q- lxiv8 #PBS -o REBUILDWRK.$$
119#-Q- lxiv8 #PBS -S /bin/ksh
120#-Q- default #!/bin/ksh
121#-Q- default ##################
122#-Q- default ## DEFAULT HOST ##
123#-Q- default ##################
124
125#**************************************************************
126# Author: Sebastien Denvil
127# Contact: Sebastien.Denvil__at__ipsl.jussieu.fr
128# $Revision::                                          $ Revision of last commit
129# $Author::                                            $ Author of last commit
130# $Date::                                              $ Date of last commit
131# IPSL (2006)
132#  This software is governed by the CeCILL licence see libIGCM/libIGCM_CeCILL.LIC
133#
134#**************************************************************
135
136#set -eu
137#set -vx
138
139date
140
141#-Q- sx8brodie export OMP_NUM_THREADS=1
142#-Q- aix6 export OMP_NUM_THREADS=1
143#-Q- ulam export OMP_NUM_THREADS=1
144
145#D- Task type (computing or post-processing)
146TaskType=post-processing
147
148########################################################################
149
150#D- Flag to determine if this job in a standalone mode
151#D- Default : value from AA_job if any
152StandAlone=${StandAlone:=true}
153
154#D- Path to libIGCM
155#D- Default : value from AA_job if any
156# WARNING For StandAlone use : To run this script on some machine (ulam and cesium)
157# WARNING you must check MirrorlibIGCM variable in sys library.
158# WARNING If this variable is true, you must use libIGCM_POST path instead
159# WARNING of your running libIGCM directory.
160libIGCM=${libIGCM:=::modipsl::/libIGCM}
161
162#-D- $hostname of the MASTER job when SUBMIT_DIR is not visible on postprocessing computer.
163MASTER=${MASTER:=mercure|titane|brodie|vargas}
164
165#D- Do we rebuild parallel output from archive or from ${BIGDIR}
166#D- Default : value from AA_job if any
167RebuildFromArchive=${RebuildFromArchive:=false}
168
169#D- Directory where files we need to rebuild are store
170#D- Default : value from AA_job if any
171#D- if RebuildFromArchive=true REBUILD_DIR=${DMFDIR}/IGCM_OUT/.../JobName/TMP
172#D- example : /dmnfs09/cont003/p86denv/IGCM_OUT/IPSLCM5/CM5PIRC7/TMP
173#D- if RebuildFromArchive=false REBUILD_DIR=${BIGDIR}/REBUILD/TagName/JobName/
174#D- example : /scratch/cont003/p86denv/REBUILD/IPSLCM5/SCAL-NEW
175REBUILD_DIR=${REBUILD_DIR:=/path/to/your/TMP/REBUILD/FILES}
176
177#D- How many directory to rebuild we have to consider
178#D- Default : value from AA_job if any
179NbRebuildDir=${NbRebuildDir:=1000}
180
181#D- Suffix date we will use to determine which directory to rebuild
182#D- We will rebuild NbRebuildDir before and including PeriodDateBegin
183#D- Default : value from AA_job if any
184LastPeriodForRebuild=${LastPeriodForRebuild:=${PeriodDateBegin:=18901201}}
185
186#D- Flag to determine atlas job's output directory
187#D- Default : value from libIGCM_post.ksh if any
188POST_DIR=${POST_DIR:=${PBS_O_WORKDIR}}
189
190#-D- libIGCM_SX contains libIGCM on Master computer. Required on some center. Always OK.
191libIGCM_SX=${libIGCM_SX:=::modipsl::/libIGCM}
192
193#D- Increased verbosity (1, 2, 3)
194#D- Default : value from AA_job if any
195Verbosity=${Verbosity:=3}
196
197#D- Low level debug : to bypass lib test checks and stack construction
198#D- Default : value from AA_job if any
199DEBUG_debug=${DEBUG_debug:=false}
200
201#D- TEMPORARY Flag to determine atmospheric resolution
202#D- Default : value from atmospheric driver if any
203RESOL_ATM=${RESOL_ATM:=ALL}
204
205#D- TEMPORARY Flag to determine ocean resolution
206#D- Default : value from ocean driver if any
207RESOL_OCE=${RESOL_OCE:=ORCA2}
208
209#D- TEMPORARY Flag to determine ice resolution
210#D- Default : value from ice driver if any
211RESOL_ICE=${RESOL_ICE:=ORCA2}
212
213#D- TEMPORARY Flag to determine biogeochemistry resolution
214#D- Default : value from ice driver if any
215RESOL_MBG=${RESOL_MBG:=ORCA2}
216
217#D- Flag to determine surface resolution
218#D- Default : value from surface driver if any
219RESOL_SRF=ALL
220
221#D- Flag to determine surface resolution
222#D- Default : value from surface driver if any
223RESOL_SBG=ALL
224
225########################################################################
226
227. ${libIGCM}/libIGCM_debug/libIGCM_debug.ksh
228      ( ${DEBUG_debug} ) && IGCM_debug_Check
229. ${libIGCM}/libIGCM_card/libIGCM_card.ksh
230     ( ${DEBUG_debug} ) && IGCM_card_Check
231. ${libIGCM}/libIGCM_date/libIGCM_date.ksh
232     ( ${DEBUG_debug} ) && IGCM_date_Check
233#-------
234. ${libIGCM}/libIGCM_sys/libIGCM_sys.ksh
235. ${libIGCM}/libIGCM_post/libIGCM_post.ksh
236
237########################################################################
238
239#set -vx
240
241RUN_DIR=${RUN_DIR_PATH}
242IGCM_sys_MkdirWork ${RUN_DIR}
243IGCM_sys_Cd ${RUN_DIR}
244
245# ------------------------------------------------------------------
246# Test if all was right before proceeding further
247# ------------------------------------------------------------------
248IGCM_debug_Verif_Exit_Post
249
250#
251if [ ${RebuildFromArchive} = true ] ; then
252    ListAllRebuildDir=$( IGCM_sys_RshArchive ls -d ${REBUILD_DIR}/REBUILD_* | grep -B $(( ${NbRebuildDir} -1 )) ${LastPeriodForRebuild} )
253else
254    ListAllRebuildDir=$( IGCM_sys_RshMaster ls -d ${REBUILD_DIR}/REBUILD_* | grep -B $(( ${NbRebuildDir} -1 )) ${LastPeriodForRebuild} )
255fi
256#
257
258for directory in ${ListAllRebuildDir} ; do
259    #
260    if [ ${RebuildFromArchive} = true ] ; then
261        IGCM_sys_Get_Dir ${directory} ${RUN_DIR}
262    else
263        IGCM_sys_Get_Master ${directory} ${RUN_DIR}
264    fi
265    #
266    IGCM_sys_Cd ${RUN_DIR}/$( basename ${directory} )
267
268    # --------------------------------------------------------------------
269    # Source function include in the REBUILD ksh and rebuild
270    # --------------------------------------------------------------------
271    . ${RUN_DIR}/$( basename ${directory} )/rebuild.ksh
272    IGCM_FlushRebuild
273    #
274    IGCM_sys_Cd ${RUN_DIR}
275    # Clean Up
276    # local clean up
277    IGCM_sys_Rm -rf $( basename ${directory} )
278    # remote clean up
279    if [ ${RebuildFromArchive} = true ] ; then
280        IGCM_sys_RshArchive rm -rf ${directory}
281    else
282        IGCM_sys_RshMaster rm -rf ${directory}
283    fi
284done
285
286# Clean RUN_DIR_PATH (necessary for cesium and titane only)
287IGCM_sys_RmRunDir -Rf ${RUN_DIR_PATH}
288
289date
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