[2] | 1 | #!/bin/ksh |
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| 2 | |
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| 3 | #************************************************************** |
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| 4 | # Author: Sebastien Denvil, Martial Mancip |
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| 5 | # Contact: Sebastien.Denvil@ipsl.jussieu.fr Martial.Mancip@ipsl.jussieu.fr |
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[4] | 6 | # $Date$ |
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[5] | 7 | # $Author$ |
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| 8 | # $Revision$ |
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[2] | 9 | # IPSL (2006) |
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| 10 | # This software is governed by the CeCILL licence see libIGCM/libIGCM_CeCILL.LIC |
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| 11 | # History: |
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| 12 | # Modification: |
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| 13 | # |
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| 14 | #************************************************************** |
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| 15 | |
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| 16 | #======================================================================== |
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| 17 | function IGCM_comp_Initialize |
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| 18 | { |
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| 19 | IGCM_debug_PushStack "IGCM_comp_Initialize" |
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| 20 | |
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| 21 | # Debug Print : |
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| 22 | echo |
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| 23 | IGCM_debug_Print 1 "IGCM_comp_Initialize :" |
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| 24 | echo |
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| 25 | |
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[155] | 26 | typeset comp compname comptagname CompatibilityTag auxprint card_UserChoices first_option i j |
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[2] | 27 | for comp in ${config_ListOfComponents[*]} ; do |
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| 28 | # Debug Print |
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| 29 | IGCM_debug_Print 1 ${comp} |
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| 30 | # Define component |
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| 31 | IGCM_card_DefineArrayFromOption ${SUBMIT_DIR}/config.card ListOfComponents ${comp} |
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| 32 | eval compname=\${config_ListOfComponents_${comp}[0]} > /dev/null 2>&1 |
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| 33 | eval comptagname=\${config_ListOfComponents_${comp}[1]} > /dev/null 2>&1 |
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| 34 | |
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| 35 | # Read libIGCM compatibility version in ${compname}.card |
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| 36 | card=${SUBMIT_DIR}/COMP/${compname}.card |
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| 37 | IGCM_card_DefineVariableFromOption ${card} Compatibility libIGCM |
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| 38 | eval CompatibilityTag=\${${compname}_Compatibility_libIGCM} > /dev/null 2>&1 |
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| 39 | |
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| 40 | if [ ! "${CompatibilityTag}" = "${libIGCM_CurrentTag}" ] ; then |
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| 41 | IGCM_debug_Exit "${compname}.card is not compatible with libIGCM version ${libIGCM_CurrentTag} see libIGCM FAQ http://wiki.ipsl.jussieu.fr/wiki_ipsl/IGCMG/libIGCM/DocUtilisateur/FAQ ." |
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| 42 | fi |
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| 43 | |
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| 44 | # Manage component executable |
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| 45 | IGCM_card_DefineArrayFromOption ${SUBMIT_DIR}/config.card Executable ${comp} |
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| 46 | |
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| 47 | # Read component Write Frequency in config.card |
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| 48 | IGCM_card_DefineVariableFromOption ${SUBMIT_DIR}/config.card ${comp} WriteFrequency |
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| 49 | # Debug Print : |
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| 50 | eval auxprint=\${config_${comp}_WriteFrequency} |
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| 51 | IGCM_debug_Print 1 "Write frequency for ${compname} : ${auxprint} " |
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| 52 | #2> /dev/null |
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| 53 | |
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| 54 | # Debug Print : |
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| 55 | IGCM_debug_Print 1 "Initialize following component library :" |
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| 56 | IGCM_debug_Print 1 ${SUBMIT_DIR}/COMP/${compname}.driver |
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| 57 | IGCM_debug_Print 3 "With tag : ${comptagname}" |
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| 58 | # Source component library |
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| 59 | . ${SUBMIT_DIR}/COMP/${compname}.driver |
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| 60 | |
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| 61 | # Debug Print |
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| 62 | IGCM_debug_Print 3 "Initialize ${comp} output directory." |
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| 63 | # Define Dirs |
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| 64 | eval R_OUT_${comp}=${R_SAVE}/${comp} |
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| 65 | eval IGCM_sys_MkdirArchive \${R_OUT_${comp}} |
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| 66 | |
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| 67 | eval R_OUT_${comp}_O=\${R_OUT_${comp}}/Output |
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| 68 | eval IGCM_sys_MkdirArchive \${R_OUT_${comp}_O} |
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| 69 | |
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| 70 | eval R_OUT_${comp}_R=\${R_OUT_${comp}}/Restart |
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| 71 | eval IGCM_sys_MkdirArchive \${R_OUT_${comp}_R} |
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| 72 | |
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| 73 | eval R_OUT_${comp}_D=\${R_OUT_${comp}}/Debug |
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| 74 | eval IGCM_sys_MkdirArchive \${R_OUT_${comp}_D} |
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| 75 | |
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| 76 | eval R_OUT_${comp}_O_I=\${R_OUT_${comp}_O}/INS |
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| 77 | eval R_OUT_${comp}_O_H=\${R_OUT_${comp}_O}/HF |
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| 78 | eval R_OUT_${comp}_O_D=\${R_OUT_${comp}_O}/DA |
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| 79 | eval R_OUT_${comp}_O_M=\${R_OUT_${comp}_O}/MO |
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| 80 | eval R_OUT_${comp}_O_Y=\${R_OUT_${comp}_O}/YE |
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| 81 | |
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| 82 | # Read UserChoices section of component card |
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[149] | 83 | IGCM_debug_Print 1 "DefineArrayFromSection : ${compname}_UserChoices ${card}" |
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[2] | 84 | IGCM_card_DefineArrayFromSection ${card} UserChoices |
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| 85 | eval first_option=\${${compname}_UserChoices[0]} > /dev/null 2>&1 |
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| 86 | if [ X${first_option} != X"Error:" ] ; then |
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| 87 | eval IGCM_debug_Print 2 "${compname}_UserChoices_Options:" \${${compname}_UserChoices[*]} |
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| 88 | if [ X${card_UserChoices[0]} != X ] ; then |
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| 89 | unset card_UserChoices |
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| 90 | fi |
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| 91 | eval set +A card_UserChoices -- \${${compname}_UserChoices[*]} > /dev/null 2>&1 |
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| 92 | typeset option |
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| 93 | for option in ${card_UserChoices[*]} ; do |
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| 94 | IGCM_card_DefineVariableFromOption ${card} UserChoices ${option} |
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[100] | 95 | eval IGCM_debug_Print 3 "${compname}_UserChoices_values: ${option} \${card_UserChoices_${option}}" |
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[2] | 96 | done |
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| 97 | fi |
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| 98 | |
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[149] | 99 | # Read and Build Output File stuff |
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| 100 | IGCM_debug_Print 1 "DefineArrayFromOption : ${compname}_OutputFiles ${card}" |
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| 101 | IGCM_card_DefineArrayFromOption ${card} OutputFiles List |
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| 102 | ListFilesName=${compname}_OutputFiles_List |
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| 103 | eval FileName0=\${${ListFilesName}[0]} > /dev/null 2>&1 |
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| 104 | # |
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| 105 | if [ X${FileName0} != X${NULL_STR} ] ; then |
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| 106 | # |
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| 107 | #IGCM_debug_Print 1 "Component : ${compname}" |
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| 108 | # |
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| 109 | # INITIALISATION |
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| 110 | # |
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| 111 | eval NbFiles=\${#${ListFilesName}[@]} > /dev/null 2>&1 |
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[155] | 112 | i=2 |
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[149] | 113 | # |
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| 114 | until [ $i -ge $NbFiles ]; do |
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| 115 | # |
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| 116 | eval flag_post=\${${ListFilesName}[$i]} > /dev/null 2>&1 |
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| 117 | # |
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| 118 | if [ X${flag_post} != XNONE ] ; then |
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[239] | 119 | # |
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| 120 | # First of all |
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| 121 | # |
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| 122 | IGCM_card_DefineArrayFromSection ${card} ${flag_post} |
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| 123 | # |
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| 124 | # Seasonal case : If option Seasonal is not found (old cards) put SEASONAL ON by default |
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| 125 | # |
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| 126 | # variable option allready typeset above |
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| 127 | for option in $( eval echo \${${compname}_${flag_post}[*]} ) ; do |
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| 128 | if [ ${option} = Seasonal ] ; then |
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| 129 | FoundSeasonal=true |
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| 130 | IGCM_card_DefineVariableFromOption ${card} ${flag_post} Seasonal |
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| 131 | fi |
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| 132 | done |
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| 133 | # |
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| 134 | if [ ! X${FoundSeasonal} = Xtrue ] ; then |
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| 135 | eval ${compname}_${flag_post}_Seasonal=ON |
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| 136 | fi |
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| 137 | # |
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| 138 | if [ $( eval echo \${${compname}_${flag_post}_Seasonal} ) = ON ] ; then |
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| 139 | Seasonal=true |
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| 140 | fi |
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| 141 | |
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[149] | 142 | # Dimension = vide si vieille card. |
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| 143 | IGCM_card_DefineArrayFromOption ${card} ${flag_post} TimeSeriesVars |
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| 144 | IGCM_card_DefineArrayFromOption ${card} ${flag_post} Patches |
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[247] | 145 | if [ X"$( eval echo \${${compname}_${flag_post}_TimeSeriesVars[*]} )" = X"Option not found ${flag_post}" ] ; then |
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[149] | 146 | # New TimeSeriesVar description, with 2D, 3D and associate ChunckJob. |
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[152] | 147 | ListDimension[0]=2D |
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| 148 | ListDimension[1]=3D |
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[149] | 149 | TimeSeries=false |
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[152] | 150 | iLoop=${#ListDimension[*]} |
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[155] | 151 | j=0 |
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| 152 | until [ $j -ge ${iLoop} ]; do |
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| 153 | Dimension=${ListDimension[${j}]} |
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[149] | 154 | IGCM_card_DefineArrayFromOption ${card} ${flag_post} TimeSeriesVars${Dimension} |
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| 155 | IGCM_card_DefineVariableFromOption ${card} ${flag_post} ChunckJob${Dimension} |
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| 156 | # |
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| 157 | # Time series WITHOUT chunk |
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| 158 | # |
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| 159 | if [ ! $( eval echo \${${compname}_${flag_post}_TimeSeriesVars${Dimension}} ) = ${NULL_STR} ] ; then |
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| 160 | if [ $( eval echo \${${compname}_${flag_post}_ChunckJob${Dimension}} ) = NONE ] ; then |
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| 161 | IGCM_debug_Print 3 "${Dimension} time series activated for ${flag_post} according to ${card}" |
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| 162 | eval TimeSeries${Dimension}=true |
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| 163 | fi |
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| 164 | fi |
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| 165 | # |
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| 166 | # Time series WITH chunk |
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| 167 | # |
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| 168 | if [ ! $( eval echo \${${compname}_${flag_post}_TimeSeriesVars${Dimension}} ) = ${NULL_STR} ] ; then |
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| 169 | chunck_size=$( eval echo \${${compname}_${flag_post}_ChunckJob${Dimension}} ) |
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[237] | 170 | if [ ! ${chunck_size} = NONE ] && [ ! ${chunck_size} = OFF ] ; then |
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[149] | 171 | IGCM_debug_Print 3 "${Dimension} time series activated with chunck for ${flag_post} according to ${card}" |
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| 172 | eval TimeSeriesChunck${Dimension}=true |
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| 173 | eval set +A CHUNCK${Dimension}_COMP \${CHUNCK${Dimension}_COMP[*]} ${comp} |
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| 174 | eval set +A CHUNCK${Dimension}_FLAG \${CHUNCK${Dimension}_FLAG[*]} ${i} |
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| 175 | eval set +A CHUNCK${Dimension}_SIZE \${CHUNCK${Dimension}_SIZE[*]} ${chunck_size} |
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| 176 | fi |
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| 177 | fi |
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[155] | 178 | (( j=j+1 )) |
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[149] | 179 | done |
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| 180 | else |
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[152] | 181 | ListDimension[0]="" |
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[149] | 182 | TimeSeries=true |
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| 183 | TimeSeries2D=false |
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| 184 | TimeSeries3D=false |
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| 185 | TimeSeriesChunck2D=false |
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| 186 | TimeSeriesChunck3D=false |
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| 187 | fi |
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| 188 | fi |
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| 189 | (( i=i+3 )) |
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| 190 | done |
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| 191 | fi |
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[2] | 192 | # Debug Print |
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| 193 | IGCM_debug_Print 3 "Initialize ${compname} with driver." |
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| 194 | # INIT component |
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| 195 | ${comp}_Initialize |
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| 196 | echo |
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| 197 | done |
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| 198 | echo "-----" |
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| 199 | echo |
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| 200 | IGCM_debug_Print 1 "DefineArrayFromOption : ListOfComponents" |
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| 201 | IGCM_debug_PrintVariables 3 config_ListOfComponents |
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| 202 | |
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| 203 | IGCM_debug_PopStack "IGCM_comp_Initialize" |
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| 204 | } |
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| 205 | |
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| 206 | #======================================================================= |
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| 207 | function IGCM_comp_PrepareDeletedFiles |
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| 208 | { |
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| 209 | IGCM_debug_PushStack "IGCM_comp_PrepareDeletedFiles" $@ |
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| 210 | |
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| 211 | if [ X${2} != X. ] ; then |
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| 212 | eval FileToBeDeleted[${#FileToBeDeleted[@]}]=$( basename ${2} ) > /dev/null 2>&1 |
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| 213 | else |
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| 214 | eval FileToBeDeleted[${#FileToBeDeleted[@]}]=$( basename ${1} ) > /dev/null 2>&1 |
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| 215 | fi |
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| 216 | |
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| 217 | IGCM_debug_PopStack "IGCM_comp_PrepareDeletedFiles" |
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| 218 | } |
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| 219 | |
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| 220 | #======================================================================= |
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| 221 | function IGCM_comp_GetInputInitialStateFiles |
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| 222 | { |
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| 223 | IGCM_debug_PushStack "IGCM_comp_GetInputInitialStateFiles" |
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| 224 | |
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| 225 | # Debug Print : |
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| 226 | echo |
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| 227 | IGCM_debug_Print 1 "IGCM_comp_GetInputInitialStateFiles :" |
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| 228 | echo |
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| 229 | |
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| 230 | # Only the first time step need InitialStateFiles |
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| 231 | # otherwise it's BoundaryConditions |
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| 232 | if ( ${FirstInitialize} ) ; then |
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| 233 | typeset comp compname comptagname card ListFilesName FileName0 NbFiles i i_ |
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| 234 | typeset file_in_ file_in file_out_ file_out do_init |
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| 235 | for comp in ${config_ListOfComponents[*]} ; do |
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| 236 | # Initialize |
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| 237 | do_init="y" |
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| 238 | # Do we need to bring initial state file for this component |
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| 239 | if [ "${config_Restarts_OverRule}" = "y" ] ; then |
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| 240 | eval do_init="n" |
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| 241 | else |
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| 242 | # Read component Restarts parameters |
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| 243 | IGCM_card_DefineVariableFromOption ${SUBMIT_DIR}/config.card ${comp} Restart |
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| 244 | eval do_start=\${config_${comp}_Restart} > /dev/null 2>&1 |
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| 245 | if [ "${do_start}" = "y" ] ; then |
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| 246 | do_init="n" |
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| 247 | else |
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| 248 | do_init="y" |
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| 249 | fi |
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| 250 | fi |
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| 251 | |
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| 252 | if [ "${do_init}" = "y" ] ; then |
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| 253 | # Define component |
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| 254 | eval compname=\${config_ListOfComponents_${comp}[0]} > /dev/null 2>&1 |
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| 255 | eval comptagname=\${config_ListOfComponents_${comp}[1]} > /dev/null 2>&1 |
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| 256 | |
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| 257 | # Debug Print : |
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| 258 | IGCM_debug_Print 3 "Initialisation files ${compname}" |
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| 259 | |
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| 260 | card=${SUBMIT_DIR}/COMP/${compname}.card |
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| 261 | |
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| 262 | IGCM_card_DefineArrayFromOption ${card} InitialStateFiles List |
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| 263 | ListFilesName=${compname}_InitialStateFiles_List |
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| 264 | |
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| 265 | eval FileName0=\${${ListFilesName}[0]} > /dev/null 2>&1 |
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| 266 | if [ X${FileName0} != X${NULL_STR} ] ; then |
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| 267 | eval NbFiles=\${#${ListFilesName}[@]} > /dev/null 2>&1 |
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| 268 | |
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| 269 | (( i=0 )) |
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| 270 | until [ $i -ge $NbFiles ]; do |
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| 271 | eval file_in_=\${${ListFilesName}[$i]} > /dev/null 2>&1 |
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| 272 | eval file_in=${file_in_} |
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| 273 | (( i_ = i+1 )) |
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| 274 | eval file_out_=\${${ListFilesName}[$i_]} > /dev/null 2>&1 |
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| 275 | eval file_out=${file_out_} |
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| 276 | |
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| 277 | IGCM_sys_Get ${file_in} ${file_out} |
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[159] | 278 | #IGCM_comp_PrepareDeletedFiles ${file_in} ${file_out} |
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[2] | 279 | |
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| 280 | (( i=i+2 )) |
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| 281 | done |
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| 282 | fi |
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| 283 | fi |
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| 284 | done |
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| 285 | fi |
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| 286 | IGCM_debug_PopStack "IGCM_comp_GetInputInitialStateFiles" |
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| 287 | } |
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| 288 | |
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| 289 | #======================================================================= |
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[247] | 290 | # Definition of Smooth modulo function |
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| 291 | # usage : |
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| 292 | # IGCM_SmoothModulo StringModulo value |
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| 293 | # |
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| 294 | # StringModulo : A string of min max and modulo like definition of Scilab vectors. |
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| 295 | # [min]:[modulo:][max] |
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| 296 | # where : |
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| 297 | # [] value are optionnals; |
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| 298 | # empty min equal 1 |
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| 299 | # empty max equal infinity |
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| 300 | # modulo not given or empty equal 1 |
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| 301 | # empty string or just ':' equal always. |
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| 302 | # |
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| 303 | # value : the value to test with the definition |
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| 304 | # |
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| 305 | # return : true(1)/false(0) |
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| 306 | function IGCM_SmoothModulo |
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| 307 | { |
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| 308 | IGCM_debug_PushStack "IGCM_SmoothModulo" |
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| 309 | typeset defVector ModValue |
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| 310 | |
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| 311 | eval set +A defVector -- $( echo "${1}" | \ |
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| 312 | gawk -F ':' '{print ($1 == "" ? 1 : $1) " " (NF==3 ? ($2 == "" ? 1 : $2) : 1) " " (NF==3 ? ($3 == "" ? -1 : $3) : ($2 == "" ? -1 : $2))}' ) |
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| 313 | |
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| 314 | # Test limits : |
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| 315 | # ${defVector[0]} <= ${2} <= ${defVector[2]} |
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| 316 | # or ${defVector[2]} == -1 |
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| 317 | if ( [ ${2} -ge ${defVector[0]} ] && \ |
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| 318 | ( [ ${2} -le ${defVector[2]} ] || \ |
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| 319 | [ ${defVector[2]} -lt 0 ] ) ) ; then |
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| 320 | |
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| 321 | # Test modulo |
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| 322 | ModValue=$( expr \( ${2} - ${defVector[0]} \) % ${defVector[1]} ) |
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| 323 | if [ ${ModValue} -eq 0 ] ; then |
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| 324 | echo true |
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| 325 | IGCM_debug_PopStack "IGCM_SmoothModulo" |
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| 326 | return 1 |
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| 327 | else |
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| 328 | echo false |
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| 329 | IGCM_debug_PopStack "IGCM_SmoothModulo" |
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| 330 | return 0 |
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| 331 | fi |
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| 332 | else |
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| 333 | echo false |
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| 334 | IGCM_debug_PopStack "IGCM_SmoothModulo" |
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| 335 | return 0 |
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| 336 | fi |
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| 337 | } |
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| 338 | |
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| 339 | #======================================================================= |
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| 340 | function IGCM_comp_GetInputSmoothFiles |
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| 341 | { |
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| 342 | IGCM_debug_PushStack "IGCM_comp_GetInputSmoothFiles" |
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| 343 | |
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| 344 | # Debug Print : |
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| 345 | echo |
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| 346 | IGCM_debug_Print 1 "IGCM_comp_GetInputSmoothFiles :" |
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| 347 | echo |
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| 348 | |
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| 349 | typeset comp compname comptagname card ListFilesName FileName0 NbFiles i i_ i__ |
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| 350 | typeset file_in_ file_in file_out_ file_out ret SmoothDef |
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| 351 | |
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| 352 | for comp in ${config_ListOfComponents[*]} ; do |
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| 353 | |
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| 354 | echo "-----" |
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| 355 | # Define component |
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| 356 | eval compname=\${config_ListOfComponents_${comp}[0]} > /dev/null 2>&1 |
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| 357 | eval comptagname=\${config_ListOfComponents_${comp}[1]} > /dev/null 2>&1 |
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| 358 | |
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| 359 | # Debug Print : |
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| 360 | IGCM_debug_Print 3 "Smooth files ${compname}" |
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| 361 | |
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| 362 | card=${SUBMIT_DIR}/COMP/${compname}.card |
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| 363 | |
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| 364 | IGCM_card_DefineArrayFromOption ${card} SmoothFiles List |
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| 365 | ListFilesName=${compname}_SmoothFiles_List |
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| 366 | eval FileName0=\${${ListFilesName}[0]} > /dev/null 2>&1 |
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| 367 | |
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[270] | 368 | if ( [ X${FileName0} != X${NULL_STR} ] && [ X${FileName0} != X"Section" ] ) ; then |
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[247] | 369 | eval NbFiles=\${#${ListFilesName}[@]} > /dev/null 2>&1 |
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| 370 | |
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| 371 | (( i=0 )) |
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| 372 | until [ $i -ge $NbFiles ]; do |
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| 373 | |
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| 374 | eval file_in_=\${${ListFilesName}[$i]} > /dev/null 2>&1 |
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| 375 | eval file_in=${file_in_} |
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| 376 | (( i_ = i+1 )) |
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| 377 | eval file_out_=\${${ListFilesName}[$i_]} > /dev/null 2>&1 |
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| 378 | eval file_out=${file_out_} |
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| 379 | |
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| 380 | # define CumulPeriod definition for this file |
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| 381 | (( i__ = i+2 )) |
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| 382 | eval SmoothDef=\${${ListFilesName}[$i__]} |
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| 383 | IGCM_debug_Print 3 " ${file_in} ${SmoothDef}" |
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| 384 | eval ret=$( IGCM_SmoothModulo ${SmoothDef} ${CumulPeriod} ) |
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[260] | 385 | if ( [ X${ret} = Xtrue ] || [ ${Period} -eq 1 ] ) ; then |
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[247] | 386 | IGCM_sys_Get ${file_in} ${file_out} |
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| 387 | |
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[260] | 388 | #IGCM_comp_PrepareDeletedFiles ${file_in} ${file_out} |
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[247] | 389 | fi |
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| 390 | (( i=i+3 )) |
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| 391 | done |
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| 392 | fi |
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| 393 | done |
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| 394 | |
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| 395 | IGCM_debug_PopStack "IGCM_comp_GetInputSmoothFiles" |
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| 396 | } |
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| 397 | |
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| 398 | #======================================================================= |
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[2] | 399 | function IGCM_comp_GetInputBoundaryFiles |
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| 400 | { |
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| 401 | IGCM_debug_PushStack "IGCM_comp_GetInputBoundaryFiles" |
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| 402 | |
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| 403 | # Debug Print : |
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| 404 | echo |
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| 405 | IGCM_debug_Print 1 "IGCM_comp_GetInputBoundaryFiles :" |
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| 406 | echo |
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| 407 | |
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| 408 | typeset comp compname comptagname card ListFilesName FileName0 NbFiles i i_ |
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| 409 | typeset file_in_ file_in file_out_ file_out |
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| 410 | |
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| 411 | if [ ${Period} = 1 ]; then |
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| 412 | ListFixBoundary=" " |
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| 413 | fi |
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| 414 | |
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| 415 | for comp in ${config_ListOfComponents[*]} ; do |
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| 416 | |
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| 417 | echo "-----" |
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| 418 | # Define component |
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| 419 | eval compname=\${config_ListOfComponents_${comp}[0]} > /dev/null 2>&1 |
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| 420 | eval comptagname=\${config_ListOfComponents_${comp}[1]} > /dev/null 2>&1 |
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| 421 | |
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| 422 | # Debug Print : |
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| 423 | IGCM_debug_Print 3 "Boundary files ${compname}" |
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| 424 | |
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| 425 | card=${SUBMIT_DIR}/COMP/${compname}.card |
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| 426 | |
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| 427 | IGCM_card_DefineArrayFromOption ${card} BoundaryFiles List |
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| 428 | ListFilesName=${compname}_BoundaryFiles_List |
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| 429 | eval FileName0=\${${ListFilesName}[0]} > /dev/null 2>&1 |
---|
| 430 | |
---|
| 431 | if [ X${FileName0} != X${NULL_STR} ] ; then |
---|
| 432 | eval NbFiles=\${#${ListFilesName}[@]} > /dev/null 2>&1 |
---|
| 433 | |
---|
| 434 | (( i=0 )) |
---|
| 435 | until [ $i -ge $NbFiles ]; do |
---|
| 436 | eval file_in_=\${${ListFilesName}[$i]} > /dev/null 2>&1 |
---|
| 437 | eval file_in=${file_in_} |
---|
| 438 | (( i_ = i+1 )) |
---|
| 439 | eval file_out_=\${${ListFilesName}[$i_]} > /dev/null 2>&1 |
---|
| 440 | eval file_out=${file_out_} |
---|
| 441 | |
---|
| 442 | IGCM_sys_Get ${file_in} ${file_out} |
---|
| 443 | IGCM_comp_PrepareDeletedFiles ${file_in} ${file_out} |
---|
| 444 | |
---|
| 445 | (( i=i+2 )) |
---|
| 446 | done |
---|
| 447 | fi |
---|
| 448 | |
---|
| 449 | # Get non deleted files |
---|
| 450 | if [ ${Period} = 1 ]; then |
---|
| 451 | |
---|
| 452 | IGCM_card_DefineArrayFromOption ${card} BoundaryFiles ListNonDel |
---|
| 453 | ListFilesName=${compname}_BoundaryFiles_ListNonDel |
---|
| 454 | eval FileName0=\${${ListFilesName}[0]} > /dev/null 2>&1 |
---|
| 455 | |
---|
| 456 | if [ X${FileName0} != X${NULL_STR} ] ; then |
---|
| 457 | eval NbFiles=\${#${ListFilesName}[@]} > /dev/null 2>&1 |
---|
| 458 | |
---|
| 459 | (( i=0 )) |
---|
| 460 | until [ $i -ge $NbFiles ]; do |
---|
| 461 | eval file_in_=\${${ListFilesName}[$i]} > /dev/null 2>&1 |
---|
| 462 | eval file_in=${file_in_} |
---|
| 463 | (( i_ = i+1 )) |
---|
| 464 | eval file_out_=\${${ListFilesName}[$i_]} > /dev/null 2>&1 |
---|
| 465 | eval file_out=${file_out_} |
---|
| 466 | |
---|
| 467 | IGCM_sys_Get ${file_in} ${file_out} |
---|
| 468 | |
---|
| 469 | if [ X${file_out} != X. ] ; then |
---|
| 470 | ListFixBoundary=${ListFixBoundary}" "${file_out} |
---|
| 471 | else |
---|
| 472 | ListFixBoundary=${ListFixBoundary}" "$( basename ${file_in} ) |
---|
| 473 | fi |
---|
| 474 | |
---|
| 475 | (( i=i+2 )) |
---|
| 476 | done |
---|
| 477 | fi |
---|
| 478 | fi |
---|
| 479 | done |
---|
| 480 | |
---|
| 481 | IGCM_debug_PopStack "IGCM_comp_GetInputBoundaryFiles" |
---|
| 482 | } |
---|
| 483 | |
---|
| 484 | #======================================================================= |
---|
| 485 | function IGCM_comp_DelFixeBoundaryFiles |
---|
| 486 | { |
---|
| 487 | IGCM_debug_PushStack "IGCM_comp_DelFixeBoundaryFiles" |
---|
| 488 | |
---|
| 489 | # Debug Print : |
---|
| 490 | echo |
---|
| 491 | IGCM_debug_Print 1 "IGCM_comp_DelFixeBoundaryFiles :" |
---|
| 492 | echo |
---|
| 493 | |
---|
| 494 | ls -l ${ListFixBoundary} |
---|
| 495 | rm -f ${ListFixBoundary} |
---|
| 496 | |
---|
| 497 | IGCM_debug_PopStack "IGCM_comp_DelFixeBoundaryFiles" |
---|
| 498 | } |
---|
| 499 | |
---|
| 500 | #======================================================================= |
---|
| 501 | function IGCM_comp_GetInputParametersFiles |
---|
| 502 | { |
---|
| 503 | IGCM_debug_PushStack "IGCM_comp_GetInputParametersFiles" |
---|
| 504 | |
---|
| 505 | # Debug Print : |
---|
| 506 | echo |
---|
| 507 | IGCM_debug_Print 1 "IGCM_comp_GetInputParametersFiles :" |
---|
| 508 | echo |
---|
| 509 | |
---|
| 510 | typeset comp compname comptagname card ListFilesName FileName0 NbFiles i i_ file_in file_out |
---|
| 511 | for comp in ${config_ListOfComponents[*]} ; do |
---|
| 512 | # Define component |
---|
| 513 | eval compname=\${config_ListOfComponents_${comp}[0]} > /dev/null 2>&1 |
---|
| 514 | eval comptagname=\${config_ListOfComponents_${comp}[1]} > /dev/null 2>&1 |
---|
| 515 | |
---|
| 516 | # Debug Print : |
---|
| 517 | IGCM_debug_Print 3 "Parameters ${compname}" |
---|
| 518 | |
---|
| 519 | card=${SUBMIT_DIR}/COMP/${compname}.card |
---|
| 520 | |
---|
| 521 | IGCM_card_DefineArrayFromOption ${card} ParametersFiles List |
---|
| 522 | ListFilesName=${compname}_ParametersFiles_List |
---|
| 523 | eval FileName0=\${${ListFilesName}[0]} > /dev/null 2>&1 |
---|
| 524 | |
---|
| 525 | if [ X${FileName0} != X${NULL_STR} ] ; then |
---|
| 526 | eval NbFiles=\${#${ListFilesName}[@]} > /dev/null 2>&1 |
---|
| 527 | |
---|
| 528 | (( i=0 )) |
---|
| 529 | until [ $i -ge $NbFiles ]; do |
---|
| 530 | eval file_in_=\${${ListFilesName}[$i]} > /dev/null 2>&1 |
---|
| 531 | eval file_in=${file_in_} |
---|
| 532 | (( i_ = i+1 )) |
---|
| 533 | eval file_out_=\${${ListFilesName}[$i_]} > /dev/null 2>&1 |
---|
| 534 | eval file_out=${file_out_} |
---|
| 535 | |
---|
| 536 | IGCM_sys_Cp ${file_in} ${file_out} |
---|
| 537 | IGCM_comp_PrepareDeletedFiles ${file_in} ${file_out} |
---|
| 538 | |
---|
| 539 | (( i=i+2 )) |
---|
| 540 | done |
---|
| 541 | fi |
---|
| 542 | done |
---|
| 543 | |
---|
| 544 | IGCM_debug_PopStack "IGCM_comp_GetInputParametersFiles" |
---|
| 545 | } |
---|
| 546 | |
---|
| 547 | #======================================================================= |
---|
| 548 | function IGCM_comp_GetInputRestartFiles |
---|
| 549 | { |
---|
| 550 | IGCM_debug_PushStack "IGCM_comp_GetInputRestartFiles" |
---|
| 551 | |
---|
| 552 | # Debug Print : |
---|
| 553 | echo |
---|
| 554 | IGCM_debug_Print 1 "IGCM_comp_GetInputRestartFiles :" |
---|
| 555 | echo |
---|
| 556 | |
---|
[38] | 557 | typeset Date_tmp Date_r Path_r do_start CompOldName Path_temp |
---|
[2] | 558 | typeset comp compname comptagname card ListFilesName FileName0 NbFiles i i_ |
---|
| 559 | typeset file_in file_out file_in_ file_out_ file_in_Name |
---|
[38] | 560 | typeset -Z4 j4 |
---|
[2] | 561 | |
---|
| 562 | for comp in ${config_ListOfComponents[*]} ; do |
---|
| 563 | # Define component |
---|
| 564 | eval compname=\${config_ListOfComponents_${comp}[0]} > /dev/null 2>&1 |
---|
| 565 | eval comptagname=\${config_ListOfComponents_${comp}[1]} > /dev/null 2>&1 |
---|
[151] | 566 | # |
---|
| 567 | card=${SUBMIT_DIR}/COMP/${compname}.card |
---|
| 568 | # |
---|
| 569 | IGCM_card_DefineArrayFromOption ${card} RestartFiles List |
---|
| 570 | ListFilesName=${compname}_RestartFiles_List |
---|
| 571 | eval FileName0=\${${ListFilesName}[0]} > /dev/null 2>&1 |
---|
[2] | 572 | |
---|
| 573 | # Debug Print : |
---|
| 574 | IGCM_debug_Print 3 "restart ${compname}" |
---|
| 575 | |
---|
| 576 | if ( ${FirstInitialize} ) ; then |
---|
| 577 | |
---|
| 578 | if [ "${config_Restarts_OverRule}" = "y" ] ; then |
---|
| 579 | eval config_${comp}_Restart="y" |
---|
| 580 | eval config_${comp}_RestartDate=${config_Restarts_RestartDate} |
---|
| 581 | eval config_${comp}_RestartJobName=${config_Restarts_RestartJobName} |
---|
| 582 | eval config_${comp}_RestartPath=${config_Restarts_RestartPath} |
---|
| 583 | eval do_start=\${config_${comp}_Restart} > /dev/null 2>&1 |
---|
| 584 | eval CompOldName=${comp} |
---|
| 585 | else |
---|
| 586 | # Read component Restarts parameters |
---|
| 587 | IGCM_card_DefineVariableFromOption ${SUBMIT_DIR}/config.card ${comp} Restart |
---|
| 588 | eval do_start=\${config_${comp}_Restart} > /dev/null 2>&1 |
---|
| 589 | |
---|
| 590 | if [ "${do_start}" = "y" ] ; then |
---|
| 591 | IGCM_card_DefineVariableFromOption ${SUBMIT_DIR}/config.card ${comp} RestartDate |
---|
| 592 | IGCM_card_DefineVariableFromOption ${SUBMIT_DIR}/config.card ${comp} RestartJobName |
---|
| 593 | IGCM_card_DefineVariableFromOption ${SUBMIT_DIR}/config.card ${comp} RestartPath |
---|
| 594 | else |
---|
| 595 | eval config_${comp}_RestartDate=-1 |
---|
| 596 | eval config_${comp}_RestartJobName=${NULL_STR} |
---|
| 597 | eval config_${comp}_RestartPath=${NULL_STR} |
---|
| 598 | fi |
---|
| 599 | IGCM_card_DefineVariableFromOption ${SUBMIT_DIR}/config.card ${comp} OldName |
---|
| 600 | eval CompOldName=\${config_${comp}_OldName} |
---|
| 601 | if [ X${CompOldName} = X ] ; then |
---|
| 602 | eval CompOldName=${comp} |
---|
| 603 | fi |
---|
| 604 | fi |
---|
| 605 | |
---|
| 606 | if [ "${do_start}" = "y" ] ; then |
---|
| 607 | |
---|
| 608 | if ( [ X${FileName0} != X${NULL_STR} ] && [ X${FileName0} != XNONE ] ) ; then |
---|
| 609 | eval NbFiles=\${#${ListFilesName}[@]} > /dev/null 2>&1 |
---|
| 610 | |
---|
| 611 | (( i=1 )) |
---|
| 612 | until [ $i -gt $NbFiles ]; do |
---|
| 613 | eval file_in_=\${${ListFilesName}[$i]} > /dev/null 2>&1 |
---|
| 614 | eval file_in=${file_in_} |
---|
| 615 | |
---|
| 616 | (( i_ = i+1 )) |
---|
| 617 | eval file_out_=\${${ListFilesName}[$i_]} > /dev/null 2>&1 |
---|
| 618 | eval file_out=${file_out_} |
---|
| 619 | |
---|
| 620 | eval Date_tmp=\${config_${comp}_RestartDate} |
---|
| 621 | Date_r=$( IGCM_date_ConvertFormatToGregorian ${Date_tmp} ) |
---|
| 622 | eval Path_r=\${config_${comp}_RestartPath}/\${config_${comp}_RestartJobName}/${CompOldName}/Restart |
---|
| 623 | eval file_in_Name=\${config_${comp}_RestartJobName}_${Date_r}_${file_in} |
---|
| 624 | |
---|
[38] | 625 | generic_restart_file_name_in=$( basename ${file_in_Name} .nc ) |
---|
| 626 | generic_restart_file_name_out=$( basename ${file_out} .nc ) |
---|
| 627 | |
---|
| 628 | eval Path_temp=\${Path_r}/${generic_restart_file_name_in} |
---|
[67] | 629 | nb_restart_file=$(IGCM_sys_CountFileArchive ${Path_temp}_????.nc) |
---|
[2] | 630 | |
---|
[41] | 631 | if [ ${nb_restart_file} -gt 1 ] ; then |
---|
| 632 | j=0 |
---|
| 633 | until [ $j -ge $nb_restart_file ]; do |
---|
| 634 | j4=${j} |
---|
| 635 | eval IGCM_sys_Get ${Path_r}/${generic_restart_file_name_in}_${j4}.nc ${generic_restart_file_name_out}_${j4}.nc |
---|
[151] | 636 | #IGCM_comp_PrepareDeletedFiles ${generic_restart_file_name_in}_${j4}.nc ${generic_restart_file_name_out}_${j4}.nc |
---|
| 637 | #eval FileToBeDeleted[${#FileToBeDeleted[@]}]="${generic_restart_file_name_out}_${j4}.nc" > /dev/null 2>&1 |
---|
[41] | 638 | (( j=j+1 )) |
---|
| 639 | done |
---|
| 640 | else |
---|
[38] | 641 | eval IGCM_sys_Get ${Path_r}/${file_in_Name} ${file_out} |
---|
[151] | 642 | #IGCM_comp_PrepareDeletedFiles ${file_in} ${file_out} |
---|
[41] | 643 | fi |
---|
[2] | 644 | |
---|
| 645 | (( i=i+3 )) |
---|
| 646 | done |
---|
| 647 | else |
---|
| 648 | if [ X${FileName0} != XNONE ] ; then |
---|
| 649 | IGCM_debug_Exit "IGCM_comp_GetInputRestartFiles : No file in list for ${compname}." |
---|
| 650 | else |
---|
| 651 | IGCM_debug_Print 1 "IGCM_comp_GetInputRestartFiles : NONE specified in Restart List ${compname}." |
---|
| 652 | fi |
---|
| 653 | fi |
---|
| 654 | fi |
---|
[151] | 655 | elif [ ${Period} -eq 1 ] ; then |
---|
| 656 | # if not FirstInitialize and first loop of this job |
---|
[2] | 657 | |
---|
| 658 | # Restore Restarts files |
---|
| 659 | #----------------------- |
---|
| 660 | if ( [ X${FileName0} != X${NULL_STR} ] && [ X${FileName0} != XNONE ] ) ; then |
---|
| 661 | eval NbFiles=\${#${ListFilesName}[@]} > /dev/null 2>&1 |
---|
| 662 | |
---|
| 663 | (( i=1 )) |
---|
| 664 | until [ $i -gt $NbFiles ]; do |
---|
| 665 | eval file_in_=\${${ListFilesName}[$i]} > /dev/null 2>&1 |
---|
| 666 | eval file_in=${file_in_} |
---|
| 667 | (( i_ = i+1 )) |
---|
| 668 | eval file_out_=\${${ListFilesName}[$i_]} > /dev/null 2>&1 |
---|
| 669 | eval file_out=${file_out_} |
---|
| 670 | |
---|
| 671 | file_in_Name=${run_Configuration_OldPrefix}_${file_in} |
---|
| 672 | |
---|
[38] | 673 | generic_restart_file_name_in=$( basename ${file_in_Name} .nc ) |
---|
| 674 | generic_restart_file_name_out=$( basename ${file_out} .nc ) |
---|
[2] | 675 | |
---|
[38] | 676 | eval Path_temp=\${R_OUT_${comp}_R}/${generic_restart_file_name_in} |
---|
[67] | 677 | nb_restart_file=$(IGCM_sys_CountFileArchive ${Path_temp}_????.nc) |
---|
| 678 | |
---|
[41] | 679 | if [ ${nb_restart_file} -gt 1 ] ; then |
---|
| 680 | j=0 |
---|
| 681 | until [ $j -ge $nb_restart_file ]; do |
---|
| 682 | j4=${j} |
---|
| 683 | eval IGCM_sys_Get \${R_OUT_${comp}_R}/${generic_restart_file_name_in}_${j4}.nc ${generic_restart_file_name_out}_${j4}.nc |
---|
[151] | 684 | #IGCM_comp_PrepareDeletedFiles ${generic_restart_file_name_in}_${j4}.nc ${generic_restart_file_name_out}_${j4}.nc |
---|
| 685 | #eval FileToBeDeleted[${#FileToBeDeleted[@]}]="${generic_restart_file_name_out}_${j4}.nc" > /dev/null 2>&1 |
---|
[41] | 686 | |
---|
| 687 | (( j=j+1 )) |
---|
| 688 | done |
---|
| 689 | else |
---|
[38] | 690 | eval IGCM_sys_Get \${R_OUT_${comp}_R}/${file_in_Name} ${file_out} |
---|
[151] | 691 | #IGCM_comp_PrepareDeletedFiles ${file_in} ${file_out} |
---|
[41] | 692 | fi |
---|
[38] | 693 | |
---|
[2] | 694 | (( i=i+3 )) |
---|
| 695 | done |
---|
| 696 | else |
---|
| 697 | if [ X${FileName0} != XNONE ] ; then |
---|
| 698 | IGCM_debug_Exit "IGCM_comp_GetInputRestartFiles : No file in list for ${compname}." |
---|
| 699 | else |
---|
| 700 | IGCM_debug_Print 1 "IGCM_comp_GetInputRestartFiles : NONE specified in Restart List ${compname}." |
---|
| 701 | fi |
---|
| 702 | fi |
---|
| 703 | fi |
---|
| 704 | done |
---|
[92] | 705 | IGCM_sys_Chmod u+rw * |
---|
[2] | 706 | |
---|
| 707 | IGCM_debug_PopStack "IGCM_comp_GetInputRestartFiles" |
---|
| 708 | } |
---|
| 709 | |
---|
| 710 | #======================================================================= |
---|
[269] | 711 | function IGCM_comp_PeriodStart |
---|
| 712 | { |
---|
| 713 | IGCM_debug_PushStack "IGCM_comp_PeriodStart" |
---|
| 714 | |
---|
| 715 | # Debug Print : |
---|
| 716 | echo |
---|
| 717 | IGCM_debug_Print 1 "IGCM_comp_PeriodStart :" |
---|
| 718 | echo |
---|
| 719 | |
---|
| 720 | typeset ExeNameIn ExeNameOut |
---|
| 721 | typeset comp compname comptagname |
---|
| 722 | for comp in ${config_ListOfComponents[*]} ; do |
---|
| 723 | # Define component |
---|
| 724 | eval compname=\${config_ListOfComponents_${comp}[0]} > /dev/null 2>&1 |
---|
| 725 | eval comptagname=\${config_ListOfComponents_${comp}[1]} > /dev/null 2>&1 |
---|
| 726 | |
---|
| 727 | # Copy executable for this component |
---|
| 728 | eval ExeNameIn=\${config_Executable_${comp}[0]} |
---|
| 729 | eval ExeNameOut=\${config_Executable_${comp}[1]} |
---|
| 730 | |
---|
| 731 | # Debug Print |
---|
| 732 | IGCM_debug_Print 3 "PeriodStart ${compname} Driver Function (if any)." |
---|
| 733 | # UPDATE component |
---|
| 734 | ${comp}_PeriodStart 2> /dev/null |
---|
| 735 | |
---|
| 736 | done |
---|
| 737 | |
---|
| 738 | IGCM_debug_PopStack "IGCM_comp_PeriodStart" |
---|
| 739 | } |
---|
| 740 | |
---|
| 741 | #======================================================================= |
---|
[2] | 742 | function IGCM_comp_Update |
---|
| 743 | { |
---|
| 744 | IGCM_debug_PushStack "IGCM_comp_Update" |
---|
| 745 | |
---|
| 746 | # Debug Print : |
---|
| 747 | echo |
---|
| 748 | IGCM_debug_Print 1 "IGCM_comp_Update :" |
---|
| 749 | echo |
---|
| 750 | |
---|
| 751 | typeset ExeNameIn ExeNameOut |
---|
| 752 | typeset comp compname comptagname |
---|
| 753 | for comp in ${config_ListOfComponents[*]} ; do |
---|
| 754 | # Define component |
---|
| 755 | eval compname=\${config_ListOfComponents_${comp}[0]} > /dev/null 2>&1 |
---|
| 756 | eval comptagname=\${config_ListOfComponents_${comp}[1]} > /dev/null 2>&1 |
---|
| 757 | |
---|
| 758 | # Copy executable for this component |
---|
| 759 | eval ExeNameIn=\${config_Executable_${comp}[0]} |
---|
| 760 | eval ExeNameOut=\${config_Executable_${comp}[1]} |
---|
[151] | 761 | |
---|
[236] | 762 | # If missing executable then stop! |
---|
[237] | 763 | #if [ ! X${ExeNameIn} = X ] && [ ! -f ${R_EXE}/${ExeNameIn} ] ; then |
---|
| 764 | # IGCM_debug_Exit "IGCM_comp_Update missing executable ${ExeNameIn}" |
---|
| 765 | #fi |
---|
[236] | 766 | |
---|
[151] | 767 | if [ ${Period} -eq 1 ] && [ -f ${R_EXE}/${ExeNameIn} ] ; then |
---|
[2] | 768 | eval IGCM_sys_Cp ${R_EXE}/${ExeNameIn} ${ExeNameOut} |
---|
| 769 | if [ -f ${RUN_DIR}/${ExeNameOut} ] ; then |
---|
| 770 | eval IGCM_sys_Chmod +rx ${RUN_DIR}/${ExeNameOut} |
---|
[151] | 771 | fi |
---|
| 772 | elif [ -f ${R_EXE}/${ExeNameIn} ] && [ ! -f ${RUN_DIR}/${ExeNameOut} ] ; then |
---|
| 773 | eval IGCM_sys_Cp ${R_EXE}/${ExeNameIn} ${ExeNameOut} |
---|
| 774 | if [ -f ${RUN_DIR}/${ExeNameOut} ] ; then |
---|
| 775 | eval IGCM_sys_Chmod +rx ${RUN_DIR}/${ExeNameOut} |
---|
| 776 | fi |
---|
[2] | 777 | fi |
---|
| 778 | |
---|
| 779 | # Debug Print |
---|
| 780 | IGCM_debug_Print 3 "Update ${compname} Parameter Files." |
---|
| 781 | # UPDATE component |
---|
| 782 | ${comp}_Update |
---|
| 783 | |
---|
| 784 | done |
---|
| 785 | |
---|
| 786 | IGCM_debug_PopStack "IGCM_comp_Update" |
---|
| 787 | } |
---|
| 788 | |
---|
| 789 | #======================================================================= |
---|
| 790 | function IGCM_comp_Finalize |
---|
| 791 | { |
---|
| 792 | IGCM_debug_PushStack "IGCM_comp_Finalize" |
---|
| 793 | |
---|
| 794 | # Debug Print : |
---|
| 795 | echo |
---|
| 796 | IGCM_debug_Print 1 "IGCM_comp_Finalize :" |
---|
| 797 | echo |
---|
| 798 | |
---|
| 799 | typeset ListTextName TextName0 |
---|
[22] | 800 | typeset comp compname comptagname card ListFilesName FileName0 NbFiles SaveOnArchive |
---|
[151] | 801 | typeset i i_ file_in file_in_ file_out file_out_ file_outin file_outin_ generic_file_name nb_rebuild_file |
---|
[38] | 802 | typeset -Z4 j4 |
---|
[2] | 803 | for comp in ${config_ListOfComponents[*]} ; do |
---|
| 804 | # Define component |
---|
| 805 | eval compname=\${config_ListOfComponents_${comp}[0]} > /dev/null 2>&1 |
---|
| 806 | eval comptagname=\${config_ListOfComponents_${comp}[1]} > /dev/null 2>&1 |
---|
| 807 | |
---|
| 808 | # Debug Print |
---|
| 809 | IGCM_debug_Print 1 "Finalize ${compname} component." |
---|
| 810 | # FINALIZE component |
---|
| 811 | ${comp}_Finalize |
---|
| 812 | |
---|
| 813 | card=${SUBMIT_DIR}/COMP/${compname}.card |
---|
| 814 | |
---|
| 815 | # Save Restarts files |
---|
| 816 | #-------------------- |
---|
| 817 | IGCM_card_DefineArrayFromOption ${card} RestartFiles List |
---|
| 818 | ListFilesName=${compname}_RestartFiles_List |
---|
| 819 | eval FileName0=\${${ListFilesName}[0]} > /dev/null 2>&1 |
---|
| 820 | |
---|
| 821 | if ( [ X${FileName0} != X${NULL_STR} ] && [ X${FileName0} != XNONE ] ) ; then |
---|
| 822 | eval NbFiles=\${#${ListFilesName}[@]} > /dev/null 2>&1 |
---|
| 823 | |
---|
| 824 | (( i=0 )) |
---|
| 825 | until [ $i -ge $NbFiles ]; do |
---|
| 826 | eval file_in_=\${${ListFilesName}[$i]} > /dev/null 2>&1 |
---|
| 827 | eval file_in=${file_in_} |
---|
| 828 | |
---|
| 829 | (( i_ = i+1 )) |
---|
| 830 | eval file_out_=\${${ListFilesName}[$i_]} > /dev/null 2>&1 |
---|
| 831 | eval file_out=${file_out_} |
---|
[151] | 832 | |
---|
| 833 | (( i_ = i+2 )) |
---|
| 834 | eval file_outin_=\${${ListFilesName}[$i_]} > /dev/null 2>&1 |
---|
| 835 | eval file_outin=${file_outin_} |
---|
| 836 | |
---|
| 837 | generic_restart_file_name_in=$( basename ${file_in} .nc ) |
---|
| 838 | generic_restart_file_name_out=$( basename ${config_UserChoices_JobName}_${PeriodDateEnd}_${file_out} .nc ) |
---|
| 839 | generic_restart_file_name_outin=$( basename ${file_outin} .nc ) |
---|
[38] | 840 | |
---|
[42] | 841 | nb_restart_file=$( ls ${generic_restart_file_name_in}_????.nc 2>/dev/null | wc -l ) |
---|
[41] | 842 | if [ ${nb_restart_file} -gt 1 ] ; then |
---|
| 843 | j=0 |
---|
| 844 | until [ $j -ge $nb_restart_file ]; do |
---|
| 845 | j4=${j} |
---|
| 846 | eval IGCM_sys_Put_Rest ${generic_restart_file_name_in}_${j4}.nc \${R_OUT_${comp}_R}/${generic_restart_file_name_out}_${j4}.nc |
---|
[151] | 847 | [ ! ${file_in} = ${file_outin} ] && IGCM_sys_Mv ${generic_restart_file_name_in}_${j4}.nc ${generic_restart_file_name_outin}_${j4}.nc |
---|
| 848 | #eval FileToBeDeleted[${#FileToBeDeleted[@]}]="${generic_restart_file_name_in}_${j4}.nc" > /dev/null 2>&1 |
---|
[41] | 849 | (( j=j+1 )) |
---|
| 850 | done |
---|
| 851 | else |
---|
[38] | 852 | eval IGCM_sys_Put_Rest ${file_in} \${R_OUT_${comp}_R}/${config_UserChoices_JobName}_${PeriodDateEnd}_${file_out} |
---|
[151] | 853 | [ ! ${file_in} = ${file_outin} ] && IGCM_sys_Mv ${file_in} ${file_outin} |
---|
| 854 | #eval FileToBeDeleted[${#FileToBeDeleted[@]}]="${file_in}" > /dev/null 2>&1 |
---|
[41] | 855 | fi |
---|
[2] | 856 | |
---|
| 857 | (( i=i+3 )) |
---|
| 858 | done |
---|
| 859 | else |
---|
| 860 | if [ X${FileName0} != XNONE ] ; then |
---|
| 861 | IGCM_debug_Exit "IGCM_comp_Finalize : No file in restart list for ${compname}." |
---|
| 862 | else |
---|
| 863 | IGCM_debug_Print 1 "IGCM_comp_Finalize : NONE specified in Restart List ${compname}." |
---|
| 864 | fi |
---|
| 865 | fi |
---|
| 866 | |
---|
| 867 | # Save Output files |
---|
| 868 | #------------------ |
---|
| 869 | IGCM_card_DefineArrayFromOption ${card} OutputFiles List |
---|
| 870 | ListFilesName=${compname}_OutputFiles_List |
---|
| 871 | eval FileName0=\${${ListFilesName}[0]} > /dev/null 2>&1 |
---|
| 872 | |
---|
| 873 | if [ X${FileName0} != X${NULL_STR} ] ; then |
---|
| 874 | eval NbFiles=\${#${ListFilesName}[@]} > /dev/null 2>&1 |
---|
| 875 | |
---|
| 876 | (( i=0 )) |
---|
| 877 | until [ $i -ge $NbFiles ]; do |
---|
[22] | 878 | SaveOnArchive=true |
---|
[2] | 879 | eval file_in_=\${${ListFilesName}[$i]} > /dev/null 2>&1 |
---|
| 880 | eval file_in=${file_in_} |
---|
| 881 | (( i_ = i+1 )) |
---|
| 882 | eval file_out_=\${${ListFilesName}[$i_]} > /dev/null 2>&1 |
---|
| 883 | eval file_out=${file_out_} |
---|
[149] | 884 | (( i_ = i+2 )) |
---|
| 885 | eval flag_post=\${${ListFilesName}[$i_]} > /dev/null 2>&1 |
---|
[22] | 886 | # |
---|
[2] | 887 | generic_file_name=$( basename ${file_in} .nc ) |
---|
[82] | 888 | nb_rebuild_file=$( ls | grep "^${generic_file_name}[_0-9]*.nc" | wc -l ) |
---|
[22] | 889 | # |
---|
| 890 | if ( [ ${nb_rebuild_file} -eq 1 ] && [ -f ${generic_file_name}_0000.nc ] ) ; then |
---|
| 891 | IGCM_debug_Print 2 "Parallelism with 1 process. Rebuilding ${file_in} not needed" |
---|
[2] | 892 | IGCM_sys_Mv ${generic_file_name}_0000.nc ${file_in} |
---|
[22] | 893 | elif [ ${nb_rebuild_file} -gt 1 ] ; then |
---|
| 894 | IGCM_debug_Print 2 "Parallelism detected rebuilding ${file_in} is needed" |
---|
| 895 | if ( [ X${config_Post_RebuildFrequency} = X${NULL_STR} ] || [ X${config_Post_RebuildFrequency} = XNONE ] ) ; then |
---|
| 896 | IGCM_debug_Print 2 "Rebuilding ${file_in} online" |
---|
| 897 | IGCM_sys_rebuild ${file_in} ${generic_file_name}_*.nc |
---|
| 898 | else |
---|
| 899 | IGCM_debug_Print 2 "Preparing offline rebuild for ${file_in}" |
---|
[34] | 900 | [ ! -d ${RUN_DIR}/REBUILD_${PeriodDateBegin} ] && IGCM_sys_Mkdir ${RUN_DIR}/REBUILD_${PeriodDateBegin} |
---|
[22] | 901 | IGCM_sys_Mv ${generic_file_name}_????.nc ${RUN_DIR}/REBUILD_${PeriodDateBegin} |
---|
[149] | 902 | |
---|
[238] | 903 | # Prepare headers for the shell dedicated to offline rebuild |
---|
[22] | 904 | if [ ! -f ${RUN_DIR}/REBUILD_${PeriodDateBegin}/rebuild.ksh ] ; then |
---|
[238] | 905 | if [ $DRYRUN -le 1 ]; then |
---|
[149] | 906 | echo \#!/bin/ksh > ${RUN_DIR}/REBUILD_${PeriodDateBegin}/rebuild.ksh |
---|
| 907 | echo function IGCM_FlushRebuild >> ${RUN_DIR}/REBUILD_${PeriodDateBegin}/rebuild.ksh |
---|
| 908 | echo { >> ${RUN_DIR}/REBUILD_${PeriodDateBegin}/rebuild.ksh |
---|
| 909 | echo IGCM_debug_PushStack "IGCM_FlushRebuild" >> ${RUN_DIR}/REBUILD_${PeriodDateBegin}/rebuild.ksh |
---|
| 910 | echo echo >> ${RUN_DIR}/REBUILD_${PeriodDateBegin}/rebuild.ksh |
---|
| 911 | echo IGCM_debug_Print 1 "IGCM_FlushRebuild" >> ${RUN_DIR}/REBUILD_${PeriodDateBegin}/rebuild.ksh |
---|
| 912 | echo echo >> ${RUN_DIR}/REBUILD_${PeriodDateBegin}/rebuild.ksh |
---|
[238] | 913 | fi |
---|
[22] | 914 | fi |
---|
| 915 | # Prepare the shell dedicated to offline rebuild |
---|
[238] | 916 | if [ $DRYRUN -le 1 ]; then |
---|
| 917 | echo IGCM_sys_rebuild ${file_in} ${generic_file_name}_*.nc >> ${RUN_DIR}/REBUILD_${PeriodDateBegin}/rebuild.ksh |
---|
| 918 | echo IGCM_debug_Verif_Exit >> ${RUN_DIR}/REBUILD_${PeriodDateBegin}/rebuild.ksh |
---|
| 919 | fi |
---|
[149] | 920 | # |
---|
| 921 | # Load Patch we need to apply and apply |
---|
[238] | 922 | if [ $DRYRUN -le 1 ]; then |
---|
| 923 | if [ X$( eval echo \${${compname}_${flag_post}_Patches[0]} ) != X${NULL_STR} ]; then |
---|
| 924 | for Patch in $( eval echo \${${compname}_${flag_post}_Patches[*]} ); do |
---|
| 925 | echo . ${libIGCM_POST}/libIGCM_post/IGCM_${Patch}.ksh >> ${RUN_DIR}/REBUILD_${PeriodDateBegin}/rebuild.ksh |
---|
| 926 | echo IGCM_${Patch} ${file_in} >> ${RUN_DIR}/REBUILD_${PeriodDateBegin}/rebuild.ksh |
---|
| 927 | done |
---|
| 928 | fi |
---|
[149] | 929 | fi |
---|
| 930 | # |
---|
[238] | 931 | if [ $DRYRUN -le 1 ]; then |
---|
| 932 | echo IGCM_sys_Put_Out ${file_in} ${file_out} >> ${RUN_DIR}/REBUILD_${PeriodDateBegin}/rebuild.ksh |
---|
| 933 | echo IGCM_debug_Verif_Exit >> ${RUN_DIR}/REBUILD_${PeriodDateBegin}/rebuild.ksh |
---|
| 934 | echo IGCM_sys_Rm ${generic_file_name}_*.nc >> ${RUN_DIR}/REBUILD_${PeriodDateBegin}/rebuild.ksh |
---|
| 935 | fi |
---|
[22] | 936 | SaveOnArchive=false |
---|
| 937 | fi |
---|
[2] | 938 | fi |
---|
[22] | 939 | # |
---|
| 940 | if [ ${SaveOnArchive} = true ] ; then |
---|
[149] | 941 | # |
---|
| 942 | # If we need to apply a patch we use TMP DIRECTORY before ARCHIVING if asynchronous rebuild is on |
---|
| 943 | # |
---|
[159] | 944 | if ( [ ! X$( eval echo \${${compname}_${flag_post}_Patches[0]} ) = X${NULL_STR} ] && [ ! X${config_Post_RebuildFrequency} = X ] && [ ! X${config_Post_RebuildFrequency} = XNONE ] ) ; then |
---|
[149] | 945 | if [ -f ${file_in} ] ; then |
---|
| 946 | IGCM_sys_Mv ${file_in} ${RUN_DIR}/REBUILD_${PeriodDateBegin} |
---|
| 947 | eval FileToBeDeleted[${#FileToBeDeleted[@]}]=REBUILD_${PeriodDateBegin}/${file_in} > /dev/null 2>&1 |
---|
| 948 | # |
---|
[238] | 949 | if [ $DRYRUN -le 1 ]; then |
---|
| 950 | for Patch in $( eval echo \${${compname}_${flag_post}_Patches[*]} ); do |
---|
| 951 | echo . ${libIGCM_POST}/libIGCM_post/IGCM_${Patch}.ksh >> ${RUN_DIR}/REBUILD_${PeriodDateBegin}/rebuild.ksh |
---|
| 952 | echo IGCM_${Patch} ${file_in} >> ${RUN_DIR}/REBUILD_${PeriodDateBegin}/rebuild.ksh |
---|
| 953 | done |
---|
| 954 | # |
---|
| 955 | echo IGCM_sys_Put_Out ${file_in} ${file_out} >> ${RUN_DIR}/REBUILD_${PeriodDateBegin}/rebuild.ksh |
---|
| 956 | echo IGCM_debug_Verif_Exit >> ${RUN_DIR}/REBUILD_${PeriodDateBegin}/rebuild.ksh |
---|
| 957 | # |
---|
| 958 | fi |
---|
[149] | 959 | fi |
---|
| 960 | else |
---|
| 961 | IGCM_sys_Put_Out ${file_in} ${file_out} |
---|
| 962 | [ $? -eq 0 ] && eval FileToBeDeleted[${#FileToBeDeleted[@]}]="${file_in}" > /dev/null 2>&1 |
---|
| 963 | if [ ${nb_rebuild_file} -gt 1 ] ; then |
---|
| 964 | for DelFile in $( ls | grep "${generic_file_name}[_0-9]*.nc" ) ; do |
---|
| 965 | eval FileToBeDeleted[${#FileToBeDeleted[@]}]=${DelFile} > /dev/null 2>&1 |
---|
| 966 | done |
---|
| 967 | fi |
---|
[2] | 968 | fi |
---|
| 969 | fi |
---|
| 970 | (( i=i+3 )) |
---|
| 971 | done |
---|
| 972 | fi |
---|
| 973 | |
---|
| 974 | # Save Output Text files of models |
---|
| 975 | #--------------------------------- |
---|
| 976 | |
---|
| 977 | IGCM_card_DefineArrayFromOption ${card} OutputText List |
---|
| 978 | ListTextName=${compname}_OutputText_List |
---|
| 979 | |
---|
| 980 | eval TextName0=\${${ListTextName}[0]} > /dev/null 2>&1 |
---|
| 981 | if [ X${TextName0} != X${NULL_STR} ] ; then |
---|
| 982 | eval NbFiles=\${#${ListTextName}[@]} > /dev/null 2>&1 |
---|
| 983 | |
---|
| 984 | (( i=0 )) |
---|
| 985 | until [ $i -eq $NbFiles ]; do |
---|
| 986 | eval file_in=\${${ListTextName}[$i]} > /dev/null 2>&1 |
---|
| 987 | (( i=i+1 )) |
---|
| 988 | |
---|
| 989 | nb_text_file=$( ls ${file_in}* 2>/dev/null | wc -l ) |
---|
| 990 | if [ ${nb_text_file} -gt 1 ] ; then |
---|
| 991 | list_file=$( ls ${file_in}* ) |
---|
| 992 | for file in ${list_file} |
---|
| 993 | do |
---|
| 994 | eval IGCM_sys_Put_Out ${file} \${R_OUT_${comp}_D}/${PREFIX}_${file} |
---|
| 995 | eval FileToBeDeleted[${#FileToBeDeleted[@]}]="${file}" > /dev/null 2>&1 |
---|
| 996 | done |
---|
| 997 | else |
---|
| 998 | if ( [ -f ${file_in}_0000 ] || [ -f ${file_in}0 ] ) ; then |
---|
| 999 | eval IGCM_sys_Mv ${file_in}* ${file_in} |
---|
| 1000 | fi |
---|
| 1001 | eval IGCM_sys_Put_Out ${file_in} \${R_OUT_${comp}_D}/${PREFIX}_${file_in} |
---|
[52] | 1002 | [ $? -eq 0 ] && eval FileToBeDeleted[${#FileToBeDeleted[@]}]="${file_in}" > /dev/null 2>&1 |
---|
[2] | 1003 | fi |
---|
| 1004 | done |
---|
| 1005 | fi |
---|
| 1006 | done |
---|
| 1007 | |
---|
| 1008 | IGCM_debug_PopStack "IGCM_comp_Finalize" |
---|
| 1009 | } |
---|