[2] | 1 | #!/bin/ksh |
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| 2 | |
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| 3 | #************************************************************** |
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| 4 | # Author: Sebastien Denvil, Martial Mancip |
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[373] | 5 | # Contact: Sebastien.Denvil__at__ipsl.jussieu.fr Martial.Mancip__at__ipsl.jussieu.fr |
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| 6 | # $Revision:: $ Revision of last commit |
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| 7 | # $Author:: $ Author of last commit |
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| 8 | # $Date:: $ Date of last commit |
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[2] | 9 | # IPSL (2006) |
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| 10 | # This software is governed by the CeCILL licence see libIGCM/libIGCM_CeCILL.LIC |
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| 11 | # |
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| 12 | #************************************************************** |
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| 13 | |
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| 14 | #======================================================================== |
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| 15 | function IGCM_comp_Initialize |
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| 16 | { |
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[544] | 17 | IGCM_debug_PushStack "IGCM_comp_Initialize" |
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[2] | 18 | |
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| 19 | # Debug Print : |
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[544] | 20 | echo |
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| 21 | IGCM_debug_Print 1 "IGCM_comp_Initialize" |
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| 22 | echo |
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[2] | 23 | |
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[544] | 24 | typeset comp compname comptagname CompatibilityTag auxprint card_UserChoices first_option option i j |
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| 25 | for comp in ${config_ListOfComponents[*]} ; do |
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| 26 | # Debug Print |
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| 27 | IGCM_debug_Print 1 "Initialize ${comp} : ${compname} component." |
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[2] | 28 | |
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[544] | 29 | # Define component |
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| 30 | IGCM_card_DefineArrayFromOption ${SUBMIT_DIR}/config.card ListOfComponents ${comp} |
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| 31 | eval compname=\${config_ListOfComponents_${comp}[0]} > /dev/null 2>&1 |
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| 32 | eval comptagname=\${config_ListOfComponents_${comp}[1]} > /dev/null 2>&1 |
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[457] | 33 | |
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[544] | 34 | # Read libIGCM compatibility version in ${compname}.card |
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| 35 | card=${SUBMIT_DIR}/COMP/${compname}.card |
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| 36 | IGCM_card_DefineVariableFromOption ${card} Compatibility libIGCM |
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[2] | 37 | |
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[544] | 38 | eval CompatibilityTag=\${${compname}_Compatibility_libIGCM} > /dev/null 2>&1 |
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| 39 | if [ ! "${CompatibilityTag}" = "${libIGCM_CurrentTag}" ] ; then |
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| 40 | IGCM_debug_Exit "${compname}.card is not compatible with libIGCM version ${libIGCM_CurrentTag} see libIGCM FAQ http://wiki.ipsl.jussieu.fr/wiki_ipsl/IGCMG/libIGCM/DocUtilisateur/FAQ ." |
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| 41 | fi |
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[2] | 42 | |
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[544] | 43 | # Manage component executable |
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| 44 | IGCM_card_DefineArrayFromOption ${SUBMIT_DIR}/config.card Executable ${comp} |
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[2] | 45 | |
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[544] | 46 | # Read component Write Frequency in config.card |
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| 47 | IGCM_card_DefineVariableFromOption ${SUBMIT_DIR}/config.card ${comp} WriteFrequency |
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| 48 | # Debug Print : |
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| 49 | eval auxprint=\${config_${comp}_WriteFrequency} |
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| 50 | IGCM_debug_Print 1 "Write frequency for ${compname} : ${auxprint} " |
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| 51 | #2> /dev/null |
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[2] | 52 | |
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[544] | 53 | # Debug Print : |
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| 54 | IGCM_debug_Print 2 "Initialize following component library" |
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[522] | 55 | |
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[544] | 56 | # Source drivers in directory DRIVER if it exist |
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| 57 | # else source them from directory COMP |
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| 58 | if [ -d ${SUBMIT_DIR}/DRIVER ] ; then |
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| 59 | IGCM_debug_Print 2 ${SUBMIT_DIR}/DRIVER/${compname}.driver |
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| 60 | # Source component library |
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| 61 | . ${SUBMIT_DIR}/DRIVER/${compname}.driver |
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| 62 | else |
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| 63 | IGCM_debug_Print 2 ${SUBMIT_DIR}/COMP/${compname}.driver |
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| 64 | # Source component library |
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| 65 | . ${SUBMIT_DIR}/COMP/${compname}.driver |
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| 66 | fi |
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| 67 | IGCM_debug_Print 3 "With tag : ${comptagname}" |
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[2] | 68 | |
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[544] | 69 | # Debug Print |
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| 70 | IGCM_debug_Print 3 "Initialize ${comp} output directory." |
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[2] | 71 | |
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[544] | 72 | # Define ARCHIVED Dirs |
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| 73 | eval R_OUT_${comp}=${R_SAVE}/${comp} |
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| 74 | eval IGCM_sys_MkdirArchive \${R_OUT_${comp}} |
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[2] | 75 | |
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[544] | 76 | eval R_OUT_${comp}_O=\${R_OUT_${comp}}/Output |
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| 77 | eval IGCM_sys_MkdirArchive \${R_OUT_${comp}_O} |
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[2] | 78 | |
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[544] | 79 | eval R_OUT_${comp}_R=\${R_OUT_${comp}}/Restart |
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| 80 | eval IGCM_sys_MkdirArchive \${R_OUT_${comp}_R} |
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[2] | 81 | |
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[544] | 82 | eval R_OUT_${comp}_D=\${R_OUT_${comp}}/Debug |
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| 83 | eval IGCM_sys_MkdirArchive \${R_OUT_${comp}_D} |
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[2] | 84 | |
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[544] | 85 | eval R_OUT_${comp}_O_I=\${R_OUT_${comp}_O}/INS |
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| 86 | eval R_OUT_${comp}_O_H=\${R_OUT_${comp}_O}/HF |
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| 87 | eval R_OUT_${comp}_O_D=\${R_OUT_${comp}_O}/DA |
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| 88 | eval R_OUT_${comp}_O_M=\${R_OUT_${comp}_O}/MO |
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| 89 | eval R_OUT_${comp}_O_Y=\${R_OUT_${comp}_O}/YE |
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| 90 | |
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| 91 | # Define BUFFERED Dirs |
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| 92 | eval R_BUF_${comp}=${R_BUFR}/${comp} |
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| 93 | eval IGCM_sys_Mkdir \${R_BUF_${comp}} |
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| 94 | |
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| 95 | eval R_BUF_${comp}_O=\${R_BUF_${comp}}/Output |
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| 96 | eval IGCM_sys_Mkdir \${R_BUF_${comp}_O} |
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| 97 | |
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| 98 | eval R_BUF_${comp}_R=\${R_BUF_${comp}}/Restart |
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| 99 | eval IGCM_sys_Mkdir \${R_BUF_${comp}_R} |
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| 100 | |
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| 101 | eval R_BUF_${comp}_D=\${R_BUF_${comp}}/Debug |
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| 102 | eval IGCM_sys_Mkdir \${R_BUF_${comp}_D} |
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| 103 | |
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| 104 | eval R_BUF_${comp}_O_I=\${R_BUF_${comp}_O}/INS |
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| 105 | eval R_BUF_${comp}_O_H=\${R_BUF_${comp}_O}/HF |
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| 106 | eval R_BUF_${comp}_O_D=\${R_BUF_${comp}_O}/DA |
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| 107 | eval R_BUF_${comp}_O_M=\${R_BUF_${comp}_O}/MO |
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| 108 | eval R_BUF_${comp}_O_Y=\${R_BUF_${comp}_O}/YE |
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| 109 | |
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| 110 | # Read UserChoices section of component card |
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| 111 | IGCM_debug_Print 2 "DefineArrayFromSection : ${compname}_UserChoices ${card}" |
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| 112 | IGCM_card_DefineArrayFromSection ${card} UserChoices |
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| 113 | eval first_option=\${${compname}_UserChoices[0]} > /dev/null 2>&1 |
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| 114 | # If section is not empty we define corresponding variables |
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| 115 | if [ X${first_option} != X"Error:" ] ; then |
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| 116 | if [ X${card_UserChoices[0]} != X ] ; then |
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| 117 | unset card_UserChoices |
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| 118 | fi |
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| 119 | eval set +A card_UserChoices -- \${${compname}_UserChoices[*]} > /dev/null 2>&1 |
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| 120 | IGCM_debug_Print 3 "${compname}_UserChoices_values:" |
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| 121 | for option in ${card_UserChoices[*]} ; do |
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| 122 | IGCM_card_DefineVariableFromOption ${card} UserChoices ${option} |
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| 123 | eval IGCM_debug_Print 3 "${option}=\${${compname}_UserChoices_${option}}" |
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| 124 | done |
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| 125 | fi |
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| 126 | |
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| 127 | # Read and Build Output File stuff |
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| 128 | IGCM_debug_Print 2 "DefineArrayFromOption : ${compname}_OutputFiles ${card}" |
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| 129 | IGCM_card_DefineArrayFromOption ${card} OutputFiles List |
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| 130 | ListFilesName=${compname}_OutputFiles_List |
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| 131 | eval FileName0=\${${ListFilesName}[0]} > /dev/null 2>&1 |
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| 132 | # |
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| 133 | if [ X${FileName0} != X${NULL_STR} ] ; then |
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| 134 | # |
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| 135 | #IGCM_debug_Print 1 "Component : ${compname}" |
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| 136 | # |
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| 137 | # INITIALISATION |
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| 138 | # |
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| 139 | eval NbFiles=\${#${ListFilesName}[@]} > /dev/null 2>&1 |
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| 140 | # |
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| 141 | i=2 |
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| 142 | # |
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| 143 | until [ $i -ge $NbFiles ]; do |
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[149] | 144 | # |
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[544] | 145 | eval flag_post=\${${ListFilesName}[$i]} > /dev/null 2>&1 |
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| 146 | # |
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| 147 | if [ X${flag_post} != XNONE ] ; then |
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| 148 | # |
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| 149 | # First of all |
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| 150 | # |
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| 151 | IGCM_card_DefineArrayFromSection ${card} ${flag_post} |
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| 152 | # |
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| 153 | # Seasonal case : If option Seasonal is not found (old cards) put SEASONAL ON by default |
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| 154 | # |
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| 155 | # variable option allready typeset above |
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| 156 | for option in $( eval echo \${${compname}_${flag_post}[*]} ) ; do |
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| 157 | if [ ${option} = Seasonal ] ; then |
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| 158 | FoundSeasonal=true |
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| 159 | IGCM_card_DefineVariableFromOption ${card} ${flag_post} Seasonal |
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| 160 | fi |
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| 161 | done |
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| 162 | # |
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| 163 | if [ ! X${FoundSeasonal} = Xtrue ] ; then |
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| 164 | eval ${compname}_${flag_post}_Seasonal=ON |
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| 165 | fi |
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| 166 | # |
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| 167 | if [ $( eval echo \${${compname}_${flag_post}_Seasonal} ) = ON ] ; then |
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| 168 | Seasonal=true |
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| 169 | fi |
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| 170 | |
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| 171 | # Dimension = vide si vieille card. |
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| 172 | IGCM_card_DefineArrayFromOption ${card} ${flag_post} TimeSeriesVars |
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| 173 | IGCM_card_DefineArrayFromOption ${card} ${flag_post} Patches |
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| 174 | if [ X"$( eval echo \${${compname}_${flag_post}_TimeSeriesVars[*]} )" = X"Option not" ] ; then |
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| 175 | # New TimeSeriesVar description, with 2D, 3D and associate ChunckJob. |
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| 176 | ListDimension[0]=2D |
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| 177 | ListDimension[1]=3D |
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| 178 | TimeSeries=false |
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| 179 | iLoop=${#ListDimension[*]} |
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| 180 | j=0 |
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| 181 | until [ $j -ge ${iLoop} ]; do |
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| 182 | Dimension=${ListDimension[${j}]} |
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| 183 | IGCM_card_DefineArrayFromOption ${card} ${flag_post} TimeSeriesVars${Dimension} |
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| 184 | IGCM_card_DefineVariableFromOption ${card} ${flag_post} ChunckJob${Dimension} |
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| 185 | # |
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| 186 | # Time series WITHOUT chunk |
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| 187 | # |
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| 188 | if [ ! $( eval echo \${${compname}_${flag_post}_TimeSeriesVars${Dimension}} ) = ${NULL_STR} ] ; then |
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| 189 | if [ $( eval echo \${${compname}_${flag_post}_ChunckJob${Dimension}} ) = NONE ] ; then |
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| 190 | IGCM_debug_Print 3 "${Dimension} time series activated for ${flag_post}" |
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| 191 | eval TimeSeries${Dimension}=true |
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[149] | 192 | fi |
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[544] | 193 | fi |
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| 194 | # |
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| 195 | # Time series WITH chunk |
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| 196 | # |
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| 197 | if [ ! $( eval echo \${${compname}_${flag_post}_TimeSeriesVars${Dimension}} ) = ${NULL_STR} ] ; then |
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| 198 | chunck_size=$( eval echo \${${compname}_${flag_post}_ChunckJob${Dimension}} ) |
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| 199 | if [ ! ${chunck_size} = NONE ] && [ ! ${chunck_size} = OFF ] ; then |
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| 200 | IGCM_debug_Print 3 "${Dimension} time series activated with chunck for ${flag_post}" |
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| 201 | eval TimeSeriesChunck${Dimension}=true |
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| 202 | eval set +A CHUNCK${Dimension}_COMP \${CHUNCK${Dimension}_COMP[*]} ${comp} |
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| 203 | eval set +A CHUNCK${Dimension}_FLAG \${CHUNCK${Dimension}_FLAG[*]} ${i} |
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| 204 | eval set +A CHUNCK${Dimension}_NAME \${CHUNCK${Dimension}_NAME[*]} ${flag_post} |
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| 205 | eval set +A CHUNCK${Dimension}_SIZE \${CHUNCK${Dimension}_SIZE[*]} ${chunck_size} |
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| 206 | fi |
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| 207 | fi |
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| 208 | (( j=j+1 )) |
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[149] | 209 | done |
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[544] | 210 | else |
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| 211 | ListDimension[0]="" |
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| 212 | TimeSeries=true |
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| 213 | TimeSeries2D=false |
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| 214 | TimeSeries3D=false |
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| 215 | TimeSeriesChunck2D=false |
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| 216 | TimeSeriesChunck3D=false |
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| 217 | fi |
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[149] | 218 | fi |
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[544] | 219 | (( i=i+3 )) |
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| 220 | done |
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| 221 | fi |
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| 222 | # Debug Print |
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| 223 | IGCM_debug_Print 3 "Initialize ${compname} with driver." |
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| 224 | # INIT component |
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| 225 | ${comp}_Initialize |
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| 226 | echo |
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| 227 | done |
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[2] | 228 | |
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[544] | 229 | IGCM_debug_PopStack "IGCM_comp_Initialize" |
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[2] | 230 | } |
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| 231 | |
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| 232 | #======================================================================= |
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| 233 | function IGCM_comp_PrepareDeletedFiles |
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| 234 | { |
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[544] | 235 | IGCM_debug_PushStack "IGCM_comp_PrepareDeletedFiles" $@ |
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| 236 | |
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| 237 | if [ X${2} != X. ] ; then |
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| 238 | eval FileToBeDeleted[${#FileToBeDeleted[@]}]=$( basename ${2} ) > /dev/null 2>&1 |
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| 239 | else |
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| 240 | eval FileToBeDeleted[${#FileToBeDeleted[@]}]=$( basename ${1} ) > /dev/null 2>&1 |
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| 241 | fi |
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[2] | 242 | |
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[544] | 243 | IGCM_debug_PopStack "IGCM_comp_PrepareDeletedFiles" |
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[2] | 244 | } |
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| 245 | |
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| 246 | #======================================================================= |
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| 247 | function IGCM_comp_GetInputInitialStateFiles |
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| 248 | { |
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[544] | 249 | IGCM_debug_PushStack "IGCM_comp_GetInputInitialStateFiles" |
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[2] | 250 | |
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[544] | 251 | # Debug Print : |
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| 252 | echo |
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| 253 | IGCM_debug_Print 1 "IGCM_comp_GetInputInitialStateFiles" |
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| 254 | echo |
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[2] | 255 | |
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[544] | 256 | # Only the first time step need InitialStateFiles |
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| 257 | # otherwise it's BoundaryConditions |
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| 258 | if ( ${FirstInitialize} ) ; then |
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| 259 | typeset comp compname comptagname card ListFilesName FileName0 NbFiles i i_ |
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| 260 | typeset file_in_ file_in file_out_ file_out do_init |
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| 261 | for comp in ${config_ListOfComponents[*]} ; do |
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| 262 | # Initialize |
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| 263 | do_init="y" |
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| 264 | # Do we need to bring initial state file for this component |
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| 265 | if [ "${config_Restarts_OverRule}" = "y" ] ; then |
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| 266 | eval do_init="n" |
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| 267 | else |
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| 268 | # Read component Restarts parameters |
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| 269 | IGCM_card_DefineVariableFromOption ${SUBMIT_DIR}/config.card ${comp} Restart |
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| 270 | eval do_start=\${config_${comp}_Restart} > /dev/null 2>&1 |
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| 271 | if [ "${do_start}" = "y" ] ; then |
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| 272 | do_init="n" |
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| 273 | else |
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[2] | 274 | do_init="y" |
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[544] | 275 | fi |
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| 276 | fi |
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[2] | 277 | |
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[544] | 278 | if [ "${do_init}" = "y" ] ; then |
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| 279 | # Define component |
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| 280 | eval compname=\${config_ListOfComponents_${comp}[0]} > /dev/null 2>&1 |
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| 281 | eval comptagname=\${config_ListOfComponents_${comp}[1]} > /dev/null 2>&1 |
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[2] | 282 | |
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[544] | 283 | # Debug Print : |
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| 284 | IGCM_debug_Print 3 "Initialisation files ${compname}" |
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[2] | 285 | |
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[544] | 286 | card=${SUBMIT_DIR}/COMP/${compname}.card |
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[2] | 287 | |
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[544] | 288 | IGCM_card_DefineArrayFromOption ${card} InitialStateFiles List |
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| 289 | ListFilesName=${compname}_InitialStateFiles_List |
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[2] | 290 | |
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[544] | 291 | eval FileName0=\${${ListFilesName}[0]} > /dev/null 2>&1 |
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| 292 | if [ X${FileName0} != X${NULL_STR} ] ; then |
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| 293 | eval NbFiles=\${#${ListFilesName}[@]} > /dev/null 2>&1 |
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| 294 | (( i=0 )) |
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| 295 | until [ $i -ge $NbFiles ]; do |
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| 296 | eval file_in_=\${${ListFilesName}[$i]} > /dev/null 2>&1 |
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| 297 | eval file_in=${file_in_} |
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| 298 | (( i_ = i+1 )) |
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| 299 | eval file_out_=\${${ListFilesName}[$i_]} > /dev/null 2>&1 |
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| 300 | eval file_out=${file_out_} |
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[2] | 301 | |
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[548] | 302 | IGCM_sys_IsFileArchived ${file_in} |
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[549] | 303 | if [ $? = 0 ] ; then |
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[548] | 304 | IGCM_sys_Get ${file_in} ${file_out} |
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| 305 | #IGCM_comp_PrepareDeletedFiles ${file_in} ${file_out} |
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| 306 | else |
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| 307 | IGCM_sys_Cp ${file_in} ${file_out} |
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| 308 | fi |
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[544] | 309 | (( i=i+2 )) |
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| 310 | done |
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| 311 | fi |
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| 312 | fi |
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| 313 | done |
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| 314 | fi |
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| 315 | IGCM_debug_PopStack "IGCM_comp_GetInputInitialStateFiles" |
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[2] | 316 | } |
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| 317 | |
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| 318 | #======================================================================= |
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[247] | 319 | # Definition of Smooth modulo function |
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| 320 | # usage : |
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| 321 | # IGCM_SmoothModulo StringModulo value |
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| 322 | # |
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| 323 | # StringModulo : A string of min max and modulo like definition of Scilab vectors. |
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| 324 | # [min]:[modulo:][max] |
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| 325 | # where : |
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| 326 | # [] value are optionnals; |
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| 327 | # empty min equal 1 |
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| 328 | # empty max equal infinity |
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| 329 | # modulo not given or empty equal 1 |
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| 330 | # empty string or just ':' equal always. |
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| 331 | # |
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| 332 | # value : the value to test with the definition |
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| 333 | # |
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| 334 | # return : true(1)/false(0) |
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| 335 | function IGCM_SmoothModulo |
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| 336 | { |
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[544] | 337 | IGCM_debug_PushStack "IGCM_SmoothModulo" |
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| 338 | typeset defVector ModValue |
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[247] | 339 | |
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[544] | 340 | eval set +A defVector -- $( echo "${1}" | \ |
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| 341 | gawk -F ':' '{print ($1 == "" ? 1 : $1) " " (NF==3 ? ($2 == "" ? 1 : $2) : 1) " " (NF==3 ? ($3 == "" ? -1 : $3) : ($2 == "" ? -1 : $2))}' ) |
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[247] | 342 | |
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[544] | 343 | # Save Smooth Min and Max. Needed to call IGCM_sys_Get when appropriate |
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| 344 | arr[1]=${defVector[0]} |
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| 345 | arr[2]=${defVector[2]} |
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[412] | 346 | |
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[544] | 347 | # Test limits : |
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| 348 | # ${defVector[0]} <= ${2} <= ${defVector[2]} |
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| 349 | # or ${defVector[2]} == -1 |
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| 350 | if ( [ ${2} -ge ${defVector[0]} ] && ( [ ${2} -le ${defVector[2]} ] || [ ${defVector[2]} -lt 0 ] ) ) ; then |
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| 351 | # Test modulo |
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| 352 | ModValue=$( expr \( ${2} - ${defVector[0]} \) % ${defVector[1]} ) |
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| 353 | if [ ${ModValue} -eq 0 ] ; then |
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| 354 | arr[3]=true |
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| 355 | echo ${arr[@]} |
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| 356 | IGCM_debug_PopStack "IGCM_SmoothModulo" |
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| 357 | return 1 |
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[247] | 358 | else |
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[544] | 359 | arr[3]=false |
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| 360 | echo ${arr[@]} |
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| 361 | IGCM_debug_PopStack "IGCM_SmoothModulo" |
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| 362 | return 0 |
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[247] | 363 | fi |
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[544] | 364 | else |
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| 365 | arr[3]=false |
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| 366 | echo ${arr[@]} |
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| 367 | IGCM_debug_PopStack "IGCM_SmoothModulo" |
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| 368 | return 0 |
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| 369 | fi |
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[247] | 370 | } |
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| 371 | |
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| 372 | #======================================================================= |
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| 373 | function IGCM_comp_GetInputSmoothFiles |
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| 374 | { |
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[544] | 375 | IGCM_debug_PushStack "IGCM_comp_GetInputSmoothFiles" |
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[247] | 376 | |
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[544] | 377 | # Debug Print : |
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| 378 | echo |
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| 379 | IGCM_debug_Print 1 "IGCM_comp_GetInputSmoothFiles" |
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| 380 | echo |
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[247] | 381 | |
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[544] | 382 | typeset comp compname comptagname card ListFilesName FileName0 NbFiles j i i_ i__ |
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| 383 | typeset file_in_ file_in file_out_ file_out ret SmoothDef aux val |
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[247] | 384 | |
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[544] | 385 | for comp in ${config_ListOfComponents[*]} ; do |
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| 386 | # Define component |
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| 387 | eval compname=\${config_ListOfComponents_${comp}[0]} > /dev/null 2>&1 |
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| 388 | eval comptagname=\${config_ListOfComponents_${comp}[1]} > /dev/null 2>&1 |
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[247] | 389 | |
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[544] | 390 | # Debug Print : |
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| 391 | IGCM_debug_Print 3 "Smooth files ${compname}" |
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[247] | 392 | |
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[544] | 393 | card=${SUBMIT_DIR}/COMP/${compname}.card |
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[247] | 394 | |
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[544] | 395 | IGCM_card_DefineArrayFromOption ${card} SmoothFiles List |
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| 396 | ListFilesName=${compname}_SmoothFiles_List |
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| 397 | eval FileName0=\${${ListFilesName}[0]} > /dev/null 2>&1 |
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[247] | 398 | |
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[544] | 399 | if ( [ X${FileName0} != X${NULL_STR} ] && [ X${FileName0} != X"Section" ] ) ; then |
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| 400 | eval NbFiles=\${#${ListFilesName}[@]} > /dev/null 2>&1 |
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[247] | 401 | |
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[544] | 402 | (( i=0 )) |
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| 403 | until [ $i -ge $NbFiles ]; do |
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| 404 | eval file_in_=\${${ListFilesName}[$i]} > /dev/null 2>&1 |
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| 405 | eval file_in=${file_in_} |
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| 406 | (( i_ = i+1 )) |
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| 407 | eval file_out_=\${${ListFilesName}[$i_]} > /dev/null 2>&1 |
---|
| 408 | eval file_out=${file_out_} |
---|
[247] | 409 | |
---|
[544] | 410 | # define CumulPeriod definition for this file |
---|
| 411 | (( i__ = i+2 )) |
---|
| 412 | eval SmoothDef=\${${ListFilesName}[$i__]} |
---|
| 413 | IGCM_debug_Print 3 " ${file_in} ${SmoothDef}" |
---|
| 414 | aux=$( IGCM_SmoothModulo ${SmoothDef} ${CumulPeriod} ) |
---|
| 415 | j=1 |
---|
| 416 | for val in ${aux} ; do |
---|
| 417 | [ ${j} -eq 1 ] && SmoothMin=${val} |
---|
| 418 | [ ${j} -eq 2 ] && SmoothMax=${val} |
---|
| 419 | [ ${j} -eq 3 ] && ret=${val} |
---|
| 420 | (( j=j+1 )) |
---|
| 421 | done |
---|
| 422 | [ ${SmoothMax} -eq -1 ] && SmoothMax=${CumulPeriod} |
---|
| 423 | if ( [ X${ret} = Xtrue ] || ( [ ${Period} -eq 1 ] && [ ${CumulPeriod} -ge ${SmoothMin} ] && [ ${CumulPeriod} -le ${SmoothMax} ] ) ) ; then |
---|
[548] | 424 | |
---|
| 425 | IGCM_sys_IsFileArchived ${file_in} |
---|
[549] | 426 | if [ $? = 0 ] ; then |
---|
[548] | 427 | IGCM_sys_Get ${file_in} ${file_out} |
---|
| 428 | #IGCM_comp_PrepareDeletedFiles ${file_in} ${file_out} |
---|
| 429 | else |
---|
| 430 | IGCM_sys_Cp ${file_in} ${file_out} |
---|
| 431 | fi |
---|
[247] | 432 | fi |
---|
[544] | 433 | (( i=i+3 )) |
---|
| 434 | done |
---|
| 435 | fi |
---|
| 436 | done |
---|
| 437 | |
---|
| 438 | IGCM_debug_PopStack "IGCM_comp_GetInputSmoothFiles" |
---|
[247] | 439 | } |
---|
| 440 | |
---|
| 441 | #======================================================================= |
---|
[2] | 442 | function IGCM_comp_GetInputBoundaryFiles |
---|
| 443 | { |
---|
[544] | 444 | IGCM_debug_PushStack "IGCM_comp_GetInputBoundaryFiles" |
---|
[2] | 445 | |
---|
[544] | 446 | # Debug Print : |
---|
| 447 | echo |
---|
| 448 | IGCM_debug_Print 1 "IGCM_comp_GetInputBoundaryFiles" |
---|
| 449 | echo |
---|
[2] | 450 | |
---|
[544] | 451 | typeset comp compname comptagname card ListFilesName FileName0 NbFiles i i_ |
---|
| 452 | typeset file_in_ file_in file_out_ file_out |
---|
[2] | 453 | |
---|
[544] | 454 | if [ ${Period} = 1 ]; then |
---|
| 455 | ListFixBoundary=" " |
---|
| 456 | fi |
---|
[2] | 457 | |
---|
[544] | 458 | for comp in ${config_ListOfComponents[*]} ; do |
---|
[2] | 459 | |
---|
[544] | 460 | # Define component |
---|
| 461 | eval compname=\${config_ListOfComponents_${comp}[0]} > /dev/null 2>&1 |
---|
| 462 | eval comptagname=\${config_ListOfComponents_${comp}[1]} > /dev/null 2>&1 |
---|
[2] | 463 | |
---|
[544] | 464 | # Debug Print : |
---|
| 465 | IGCM_debug_Print 3 "Boundary files ${compname}" |
---|
[2] | 466 | |
---|
[544] | 467 | card=${SUBMIT_DIR}/COMP/${compname}.card |
---|
[2] | 468 | |
---|
[544] | 469 | IGCM_card_DefineArrayFromOption ${card} BoundaryFiles List |
---|
| 470 | ListFilesName=${compname}_BoundaryFiles_List |
---|
| 471 | eval FileName0=\${${ListFilesName}[0]} > /dev/null 2>&1 |
---|
[2] | 472 | |
---|
[544] | 473 | if [ X${FileName0} != X${NULL_STR} ] ; then |
---|
| 474 | eval NbFiles=\${#${ListFilesName}[@]} > /dev/null 2>&1 |
---|
[2] | 475 | |
---|
[544] | 476 | (( i=0 )) |
---|
| 477 | until [ $i -ge $NbFiles ]; do |
---|
| 478 | eval file_in_=\${${ListFilesName}[$i]} > /dev/null 2>&1 |
---|
| 479 | eval file_in=${file_in_} |
---|
| 480 | (( i_ = i+1 )) |
---|
| 481 | eval file_out_=\${${ListFilesName}[$i_]} > /dev/null 2>&1 |
---|
| 482 | eval file_out=${file_out_} |
---|
[2] | 483 | |
---|
[544] | 484 | IGCM_sys_Get ${file_in} ${file_out} |
---|
| 485 | IGCM_comp_PrepareDeletedFiles ${file_in} ${file_out} |
---|
[2] | 486 | |
---|
[544] | 487 | (( i=i+2 )) |
---|
| 488 | done |
---|
| 489 | fi |
---|
[2] | 490 | |
---|
[544] | 491 | # Get non deleted files |
---|
| 492 | if [ ${Period} = 1 ]; then |
---|
[2] | 493 | |
---|
[544] | 494 | IGCM_card_DefineArrayFromOption ${card} BoundaryFiles ListNonDel |
---|
| 495 | ListFilesName=${compname}_BoundaryFiles_ListNonDel |
---|
| 496 | eval FileName0=\${${ListFilesName}[0]} > /dev/null 2>&1 |
---|
| 497 | |
---|
| 498 | if [ X${FileName0} != X${NULL_STR} ] ; then |
---|
| 499 | eval NbFiles=\${#${ListFilesName}[@]} > /dev/null 2>&1 |
---|
| 500 | |
---|
| 501 | (( i=0 )) |
---|
| 502 | until [ $i -ge $NbFiles ]; do |
---|
| 503 | eval file_in_=\${${ListFilesName}[$i]} > /dev/null 2>&1 |
---|
| 504 | eval file_in=${file_in_} |
---|
| 505 | (( i_ = i+1 )) |
---|
| 506 | eval file_out_=\${${ListFilesName}[$i_]} > /dev/null 2>&1 |
---|
| 507 | eval file_out=${file_out_} |
---|
[2] | 508 | |
---|
[548] | 509 | IGCM_sys_IsFileArchived ${file_in} |
---|
| 510 | if [ $? = 0 ] ; then |
---|
| 511 | IGCM_sys_Get ${file_in} ${file_out} |
---|
| 512 | #IGCM_comp_PrepareDeletedFiles ${file_in} ${file_out} |
---|
| 513 | else |
---|
| 514 | IGCM_sys_Cp ${file_in} ${file_out} |
---|
| 515 | fi |
---|
[2] | 516 | |
---|
[544] | 517 | if [ X${file_out} != X. ] ; then |
---|
| 518 | ListFixBoundary=${ListFixBoundary}" "${file_out} |
---|
| 519 | else |
---|
| 520 | ListFixBoundary=${ListFixBoundary}" "$( basename ${file_in} ) |
---|
| 521 | fi |
---|
[2] | 522 | |
---|
[544] | 523 | (( i=i+2 )) |
---|
| 524 | done |
---|
| 525 | fi |
---|
| 526 | fi |
---|
| 527 | done |
---|
| 528 | |
---|
| 529 | IGCM_debug_PopStack "IGCM_comp_GetInputBoundaryFiles" |
---|
[2] | 530 | } |
---|
| 531 | |
---|
| 532 | #======================================================================= |
---|
| 533 | function IGCM_comp_DelFixeBoundaryFiles |
---|
| 534 | { |
---|
[544] | 535 | IGCM_debug_PushStack "IGCM_comp_DelFixeBoundaryFiles" |
---|
[2] | 536 | |
---|
[544] | 537 | # Debug Print : |
---|
| 538 | echo |
---|
| 539 | IGCM_debug_Print 1 "IGCM_comp_DelFixeBoundaryFiles" |
---|
| 540 | echo |
---|
[2] | 541 | |
---|
[544] | 542 | ls -l ${ListFixBoundary} |
---|
| 543 | rm -f ${ListFixBoundary} |
---|
[2] | 544 | |
---|
[544] | 545 | IGCM_debug_PopStack "IGCM_comp_DelFixeBoundaryFiles" |
---|
[2] | 546 | } |
---|
| 547 | |
---|
| 548 | #======================================================================= |
---|
| 549 | function IGCM_comp_GetInputParametersFiles |
---|
| 550 | { |
---|
[544] | 551 | IGCM_debug_PushStack "IGCM_comp_GetInputParametersFiles" |
---|
[2] | 552 | |
---|
[544] | 553 | # Debug Print : |
---|
| 554 | echo |
---|
| 555 | IGCM_debug_Print 1 "IGCM_comp_GetInputParametersFiles" |
---|
| 556 | echo |
---|
[2] | 557 | |
---|
[544] | 558 | typeset comp compname comptagname card ListFilesName FileName0 NbFiles i i_ file_in file_out |
---|
| 559 | for comp in ${config_ListOfComponents[*]} ; do |
---|
| 560 | # Define component |
---|
| 561 | eval compname=\${config_ListOfComponents_${comp}[0]} > /dev/null 2>&1 |
---|
| 562 | eval comptagname=\${config_ListOfComponents_${comp}[1]} > /dev/null 2>&1 |
---|
[2] | 563 | |
---|
[544] | 564 | # Debug Print : |
---|
| 565 | IGCM_debug_Print 3 "Parameters ${compname}" |
---|
[2] | 566 | |
---|
[544] | 567 | card=${SUBMIT_DIR}/COMP/${compname}.card |
---|
[2] | 568 | |
---|
[544] | 569 | IGCM_card_DefineArrayFromOption ${card} ParametersFiles List |
---|
| 570 | ListFilesName=${compname}_ParametersFiles_List |
---|
| 571 | eval FileName0=\${${ListFilesName}[0]} > /dev/null 2>&1 |
---|
[2] | 572 | |
---|
[544] | 573 | if [ X${FileName0} != X${NULL_STR} ] ; then |
---|
| 574 | eval NbFiles=\${#${ListFilesName}[@]} > /dev/null 2>&1 |
---|
[2] | 575 | |
---|
[544] | 576 | (( i=0 )) |
---|
| 577 | until [ $i -ge $NbFiles ]; do |
---|
| 578 | eval file_in_=\${${ListFilesName}[$i]} > /dev/null 2>&1 |
---|
| 579 | eval file_in=${file_in_} |
---|
| 580 | (( i_ = i+1 )) |
---|
| 581 | eval file_out_=\${${ListFilesName}[$i_]} > /dev/null 2>&1 |
---|
| 582 | eval file_out=${file_out_} |
---|
[2] | 583 | |
---|
[544] | 584 | IGCM_sys_Cp ${file_in} ${file_out} |
---|
| 585 | IGCM_comp_PrepareDeletedFiles ${file_in} ${file_out} |
---|
[2] | 586 | |
---|
[544] | 587 | (( i=i+2 )) |
---|
| 588 | done |
---|
| 589 | fi |
---|
| 590 | done |
---|
[2] | 591 | |
---|
[544] | 592 | IGCM_debug_PopStack "IGCM_comp_GetInputParametersFiles" |
---|
[2] | 593 | } |
---|
| 594 | |
---|
| 595 | #======================================================================= |
---|
| 596 | function IGCM_comp_GetInputRestartFiles |
---|
| 597 | { |
---|
[544] | 598 | IGCM_debug_PushStack "IGCM_comp_GetInputRestartFiles" |
---|
[2] | 599 | |
---|
[544] | 600 | # Debug Print : |
---|
| 601 | echo |
---|
| 602 | IGCM_debug_Print 1 "IGCM_comp_GetInputRestartFiles" |
---|
| 603 | echo |
---|
[2] | 604 | |
---|
[544] | 605 | typeset Date_tmp Date_r Path_r do_start CompOldName Path_OUT Path_BUF Buffered |
---|
| 606 | typeset comp compname comptagname card ListFilesName FileName0 NbFiles i i_ |
---|
| 607 | typeset file_in file_out file_in_ file_out_ file_in_Name |
---|
| 608 | typeset -Z4 j4 |
---|
[2] | 609 | |
---|
[544] | 610 | for comp in ${config_ListOfComponents[*]} ; do |
---|
| 611 | # Define component |
---|
| 612 | eval compname=\${config_ListOfComponents_${comp}[0]} > /dev/null 2>&1 |
---|
| 613 | eval comptagname=\${config_ListOfComponents_${comp}[1]} > /dev/null 2>&1 |
---|
| 614 | # |
---|
| 615 | card=${SUBMIT_DIR}/COMP/${compname}.card |
---|
| 616 | # |
---|
| 617 | IGCM_card_DefineArrayFromOption ${card} RestartFiles List |
---|
| 618 | ListFilesName=${compname}_RestartFiles_List |
---|
| 619 | eval FileName0=\${${ListFilesName}[0]} > /dev/null 2>&1 |
---|
[2] | 620 | |
---|
[544] | 621 | # Debug Print : |
---|
| 622 | IGCM_debug_Print 3 "restart ${compname}" |
---|
[2] | 623 | |
---|
[544] | 624 | if ( ${FirstInitialize} ) ; then |
---|
[2] | 625 | |
---|
[544] | 626 | if [ "${config_Restarts_OverRule}" = "y" ] ; then |
---|
| 627 | eval config_${comp}_Restart="y" |
---|
| 628 | eval config_${comp}_RestartDate=${config_Restarts_RestartDate} |
---|
| 629 | eval config_${comp}_RestartJobName=${config_Restarts_RestartJobName} |
---|
| 630 | eval config_${comp}_RestartPath=${config_Restarts_RestartPath} |
---|
| 631 | eval do_start=\${config_${comp}_Restart} > /dev/null 2>&1 |
---|
| 632 | eval CompOldName=${comp} |
---|
| 633 | else |
---|
[2] | 634 | # Read component Restarts parameters |
---|
[544] | 635 | IGCM_card_DefineVariableFromOption ${SUBMIT_DIR}/config.card ${comp} Restart |
---|
| 636 | eval do_start=\${config_${comp}_Restart} > /dev/null 2>&1 |
---|
[2] | 637 | |
---|
[544] | 638 | if [ "${do_start}" = "y" ] ; then |
---|
| 639 | IGCM_card_DefineVariableFromOption ${SUBMIT_DIR}/config.card ${comp} RestartDate |
---|
| 640 | IGCM_card_DefineVariableFromOption ${SUBMIT_DIR}/config.card ${comp} RestartJobName |
---|
| 641 | IGCM_card_DefineVariableFromOption ${SUBMIT_DIR}/config.card ${comp} RestartPath |
---|
| 642 | else |
---|
| 643 | eval config_${comp}_RestartDate=-1 |
---|
| 644 | eval config_${comp}_RestartJobName=${NULL_STR} |
---|
| 645 | eval config_${comp}_RestartPath=${NULL_STR} |
---|
| 646 | fi |
---|
| 647 | IGCM_card_DefineVariableFromOption ${SUBMIT_DIR}/config.card ${comp} OldName |
---|
| 648 | eval CompOldName=\${config_${comp}_OldName} |
---|
| 649 | if [ X${CompOldName} = X ] ; then |
---|
| 650 | eval CompOldName=${comp} |
---|
| 651 | fi |
---|
| 652 | fi |
---|
[2] | 653 | |
---|
[544] | 654 | if [ "${do_start}" = "y" ] ; then |
---|
[2] | 655 | |
---|
[544] | 656 | if ( [ X${FileName0} != X${NULL_STR} ] && [ X${FileName0} != XNONE ] ) ; then |
---|
| 657 | eval NbFiles=\${#${ListFilesName}[@]} > /dev/null 2>&1 |
---|
[2] | 658 | |
---|
[544] | 659 | (( i=1 )) |
---|
| 660 | until [ $i -gt $NbFiles ]; do |
---|
| 661 | eval file_in_=\${${ListFilesName}[$i]} > /dev/null 2>&1 |
---|
| 662 | eval file_in=${file_in_} |
---|
[2] | 663 | |
---|
[544] | 664 | (( i_ = i+1 )) |
---|
| 665 | eval file_out_=\${${ListFilesName}[$i_]} > /dev/null 2>&1 |
---|
| 666 | eval file_out=${file_out_} |
---|
| 667 | |
---|
| 668 | eval Date_tmp=\${config_${comp}_RestartDate} |
---|
| 669 | Date_r=$( IGCM_date_ConvertFormatToGregorian ${Date_tmp} ) |
---|
| 670 | eval Path_r=\${config_${comp}_RestartPath}/\${config_${comp}_RestartJobName}/${CompOldName}/Restart |
---|
| 671 | eval file_in_Name=\${config_${comp}_RestartJobName}_${Date_r}_${file_in} |
---|
[2] | 672 | |
---|
[544] | 673 | generic_restart_file_name_in=$( basename ${file_in_Name} .nc ) |
---|
| 674 | generic_restart_file_name_out=$( basename ${file_out} .nc ) |
---|
| 675 | |
---|
| 676 | eval Path_OUT=\${Path_r}/${generic_restart_file_name_in} |
---|
| 677 | nb_restart_file=$(IGCM_sys_CountFileArchive ${Path_OUT}_????.nc) |
---|
[2] | 678 | |
---|
[544] | 679 | if [ ${nb_restart_file} -gt 1 ] ; then |
---|
| 680 | j=0 |
---|
| 681 | until [ $j -ge $nb_restart_file ]; do |
---|
| 682 | j4=${j} |
---|
| 683 | eval IGCM_sys_Get ${Path_r}/${generic_restart_file_name_in}_${j4}.nc ${generic_restart_file_name_out}_${j4}.nc |
---|
| 684 | #IGCM_comp_PrepareDeletedFiles ${generic_restart_file_name_in}_${j4}.nc ${generic_restart_file_name_out}_${j4}.nc |
---|
| 685 | #eval FileToBeDeleted[${#FileToBeDeleted[@]}]="${generic_restart_file_name_out}_${j4}.nc" > /dev/null 2>&1 |
---|
| 686 | (( j=j+1 )) |
---|
| 687 | done |
---|
| 688 | else |
---|
| 689 | eval IGCM_sys_Get ${Path_r}/${file_in_Name} ${file_out} |
---|
| 690 | #IGCM_comp_PrepareDeletedFiles ${file_in} ${file_out} |
---|
[2] | 691 | fi |
---|
[544] | 692 | |
---|
| 693 | (( i=i+3 )) |
---|
| 694 | done |
---|
| 695 | else |
---|
| 696 | if [ X${FileName0} != XNONE ] ; then |
---|
| 697 | IGCM_debug_Exit "IGCM_comp_GetInputRestartFiles : No file in list for ${compname}." |
---|
| 698 | else |
---|
| 699 | IGCM_debug_Print 1 "IGCM_comp_GetInputRestartFiles : NONE specified in Restart List ${compname}." |
---|
| 700 | fi |
---|
| 701 | fi |
---|
| 702 | fi |
---|
| 703 | elif [ ${Period} -eq 1 ] ; then |
---|
| 704 | # if not FirstInitialize and first loop of this job |
---|
[2] | 705 | |
---|
[544] | 706 | # Restore Restarts files |
---|
| 707 | #----------------------- |
---|
| 708 | if ( [ X${FileName0} != X${NULL_STR} ] && [ X${FileName0} != XNONE ] ) ; then |
---|
| 709 | eval NbFiles=\${#${ListFilesName}[@]} > /dev/null 2>&1 |
---|
[2] | 710 | |
---|
[544] | 711 | (( i=1 )) |
---|
| 712 | until [ $i -gt $NbFiles ]; do |
---|
| 713 | eval file_in_=\${${ListFilesName}[$i]} > /dev/null 2>&1 |
---|
| 714 | eval file_in=${file_in_} |
---|
| 715 | (( i_ = i+1 )) |
---|
| 716 | eval file_out_=\${${ListFilesName}[$i_]} > /dev/null 2>&1 |
---|
| 717 | eval file_out=${file_out_} |
---|
| 718 | |
---|
| 719 | file_in_Name=${run_Configuration_OldPrefix}_${file_in} |
---|
[2] | 720 | |
---|
[544] | 721 | generic_restart_file_name_in=$( basename ${file_in_Name} .nc ) |
---|
| 722 | generic_restart_file_name_out=$( basename ${file_out} .nc ) |
---|
[2] | 723 | |
---|
[544] | 724 | eval Path_BUF=\${R_BUF_${comp}_R}/${generic_restart_file_name_in} |
---|
| 725 | eval Path_OUT=\${R_OUT_${comp}_R}/${generic_restart_file_name_in} |
---|
[67] | 726 | |
---|
[544] | 727 | if [ -f ${Path_BUF}*.nc ] ; then |
---|
| 728 | Buffered=true |
---|
| 729 | nb_restart_file=$(IGCM_sys_CountFileBuffer ${Path_BUF}_????.nc) |
---|
| 730 | else |
---|
| 731 | Buffered=false |
---|
| 732 | nb_restart_file=$(IGCM_sys_CountFileArchive ${Path_OUT}_????.nc) |
---|
| 733 | fi |
---|
[41] | 734 | |
---|
[544] | 735 | if [ ${nb_restart_file} -gt 1 ] ; then |
---|
| 736 | j=0 |
---|
| 737 | until [ $j -ge $nb_restart_file ]; do |
---|
| 738 | j4=${j} |
---|
| 739 | if [ ${Buffered} ] ; then |
---|
| 740 | IGCM_sys_GetBuffer ${Path_BUF}_${j4}.nc ${generic_restart_file_name_out}_${j4}.nc |
---|
| 741 | else |
---|
| 742 | IGCM_sys_Get ${Path_OUT}_${j4}.nc ${generic_restart_file_name_out}_${j4}.nc |
---|
| 743 | fi |
---|
| 744 | (( j=j+1 )) |
---|
| 745 | done |
---|
| 746 | else |
---|
| 747 | if [ ${Buffered} ] ; then |
---|
| 748 | eval IGCM_sys_GetBuffer \${R_BUF_${comp}_R}/${file_in_Name} ${file_out} |
---|
[2] | 749 | else |
---|
[544] | 750 | eval IGCM_sys_Get \${R_OUT_${comp}_R}/${file_in_Name} ${file_out} |
---|
[2] | 751 | fi |
---|
[544] | 752 | fi |
---|
| 753 | |
---|
| 754 | (( i=i+3 )) |
---|
| 755 | done |
---|
| 756 | else |
---|
| 757 | if [ X${FileName0} != XNONE ] ; then |
---|
| 758 | IGCM_debug_Exit "IGCM_comp_GetInputRestartFiles : No file in list for ${compname}." |
---|
| 759 | else |
---|
| 760 | IGCM_debug_Print 1 "IGCM_comp_GetInputRestartFiles : NONE specified in Restart List ${compname}." |
---|
[2] | 761 | fi |
---|
[544] | 762 | fi |
---|
[420] | 763 | fi |
---|
[544] | 764 | done |
---|
[420] | 765 | |
---|
[544] | 766 | NbFiles=$( ls * 2> /dev/null | wc -l ) |
---|
| 767 | if [ ${NbFiles} -gt 0 ] ; then |
---|
| 768 | IGCM_sys_Chmod u+rw * |
---|
| 769 | fi |
---|
| 770 | |
---|
| 771 | IGCM_debug_PopStack "IGCM_comp_GetInputRestartFiles" |
---|
[2] | 772 | } |
---|
| 773 | |
---|
| 774 | #======================================================================= |
---|
[269] | 775 | function IGCM_comp_PeriodStart |
---|
| 776 | { |
---|
[544] | 777 | IGCM_debug_PushStack "IGCM_comp_PeriodStart" |
---|
[269] | 778 | |
---|
[544] | 779 | # Debug Print : |
---|
| 780 | echo |
---|
| 781 | IGCM_debug_Print 1 "IGCM_comp_PeriodStart" |
---|
| 782 | echo |
---|
[269] | 783 | |
---|
[544] | 784 | typeset ExeNameIn ExeNameOut |
---|
| 785 | typeset comp compname comptagname |
---|
| 786 | for comp in ${config_ListOfComponents[*]} ; do |
---|
| 787 | # Define component |
---|
| 788 | eval compname=\${config_ListOfComponents_${comp}[0]} > /dev/null 2>&1 |
---|
| 789 | eval comptagname=\${config_ListOfComponents_${comp}[1]} > /dev/null 2>&1 |
---|
[269] | 790 | |
---|
[544] | 791 | # Copy executable for this component |
---|
| 792 | eval ExeNameIn=\${config_Executable_${comp}[0]} |
---|
| 793 | eval ExeNameOut=\${config_Executable_${comp}[1]} |
---|
[269] | 794 | |
---|
[544] | 795 | # Debug Print |
---|
| 796 | IGCM_debug_Print 3 "PeriodStart ${compname} Driver Function (if any)." |
---|
| 797 | # UPDATE component |
---|
| 798 | ${comp}_PeriodStart 2> /dev/null |
---|
[269] | 799 | |
---|
[544] | 800 | done |
---|
[269] | 801 | |
---|
[544] | 802 | IGCM_debug_PopStack "IGCM_comp_PeriodStart" |
---|
[269] | 803 | } |
---|
| 804 | |
---|
| 805 | #======================================================================= |
---|
[2] | 806 | function IGCM_comp_Update |
---|
| 807 | { |
---|
[544] | 808 | IGCM_debug_PushStack "IGCM_comp_Update" |
---|
[2] | 809 | |
---|
| 810 | # Debug Print : |
---|
[544] | 811 | echo |
---|
| 812 | IGCM_debug_Print 1 "IGCM_comp_Update" |
---|
| 813 | echo |
---|
[2] | 814 | |
---|
[544] | 815 | typeset ExeNameIn ExeNameOut |
---|
| 816 | typeset comp compname comptagname |
---|
| 817 | for comp in ${config_ListOfComponents[*]} ; do |
---|
| 818 | # Define component |
---|
| 819 | eval compname=\${config_ListOfComponents_${comp}[0]} > /dev/null 2>&1 |
---|
| 820 | eval comptagname=\${config_ListOfComponents_${comp}[1]} > /dev/null 2>&1 |
---|
[2] | 821 | |
---|
[544] | 822 | # Copy executable for this component |
---|
| 823 | eval ExeNameIn=\${config_Executable_${comp}[0]} |
---|
| 824 | eval ExeNameOut=\${config_Executable_${comp}[1]} |
---|
[151] | 825 | |
---|
[544] | 826 | # If missing executable then stop! |
---|
| 827 | #if [ ! X${ExeNameIn} = X ] && [ ! -f ${R_EXE}/${ExeNameIn} ] ; then |
---|
| 828 | # IGCM_debug_Exit "IGCM_comp_Update missing executable ${ExeNameIn}" |
---|
| 829 | #fi |
---|
[236] | 830 | |
---|
[544] | 831 | if [ ${Period} -eq 1 ] && [ -f ${R_EXE}/${ExeNameIn} ] ; then |
---|
| 832 | eval IGCM_sys_Cp ${R_EXE}/${ExeNameIn} ${ExeNameOut} |
---|
| 833 | if [ -f ${RUN_DIR}/${ExeNameOut} ] ; then |
---|
| 834 | eval IGCM_sys_Chmod +rx ${RUN_DIR}/${ExeNameOut} |
---|
| 835 | fi |
---|
| 836 | elif [ -f ${R_EXE}/${ExeNameIn} ] && [ ! -f ${RUN_DIR}/${ExeNameOut} ] ; then |
---|
| 837 | eval IGCM_sys_Cp ${R_EXE}/${ExeNameIn} ${ExeNameOut} |
---|
| 838 | if [ -f ${RUN_DIR}/${ExeNameOut} ] ; then |
---|
| 839 | eval IGCM_sys_Chmod +rx ${RUN_DIR}/${ExeNameOut} |
---|
| 840 | fi |
---|
| 841 | fi |
---|
[2] | 842 | |
---|
[544] | 843 | # Debug Print |
---|
| 844 | IGCM_debug_Print 1 "Update ${compname} Parameter Files." |
---|
| 845 | # UPDATE component |
---|
| 846 | ${comp}_Update |
---|
[2] | 847 | |
---|
[544] | 848 | done |
---|
[2] | 849 | |
---|
[544] | 850 | IGCM_debug_PopStack "IGCM_comp_Update" |
---|
[2] | 851 | } |
---|
| 852 | |
---|
| 853 | #======================================================================= |
---|
| 854 | function IGCM_comp_Finalize |
---|
| 855 | { |
---|
[544] | 856 | IGCM_debug_PushStack "IGCM_comp_Finalize" |
---|
[2] | 857 | |
---|
[544] | 858 | # Debug Print : |
---|
| 859 | echo |
---|
| 860 | IGCM_debug_Print 1 "IGCM_comp_Finalize" |
---|
| 861 | echo |
---|
[2] | 862 | |
---|
[544] | 863 | typeset ListTextName TextName0 |
---|
| 864 | typeset comp compname comptagname card ListFilesName FileName0 NbFiles SaveOnArchive |
---|
| 865 | typeset i i_ file_in file_in_ file_out file_out_ file_outin file_outin_ generic_file_name nb_rebuild_file |
---|
| 866 | typeset -Z4 j4 |
---|
| 867 | typeset list_file nlist_file |
---|
| 868 | typeset compactoutputs |
---|
[429] | 869 | |
---|
[544] | 870 | compactoutputs=false |
---|
| 871 | if [ X${JobType} != XRUN ] ; then |
---|
| 872 | compactoutputs=true |
---|
| 873 | elif [ X${config_UserChoices_CompactText} != Xn ] ; then |
---|
| 874 | compactoutputs=true |
---|
| 875 | fi |
---|
[433] | 876 | |
---|
[544] | 877 | for comp in ${config_ListOfComponents[*]} ; do |
---|
| 878 | # Define component |
---|
| 879 | eval compname=\${config_ListOfComponents_${comp}[0]} > /dev/null 2>&1 |
---|
| 880 | eval comptagname=\${config_ListOfComponents_${comp}[1]} > /dev/null 2>&1 |
---|
[2] | 881 | |
---|
[544] | 882 | # Debug Print |
---|
| 883 | IGCM_debug_Print 1 "Finalize ${comp} : ${compname} component." |
---|
| 884 | # FINALIZE component |
---|
| 885 | ${comp}_Finalize |
---|
[2] | 886 | |
---|
[544] | 887 | card=${SUBMIT_DIR}/COMP/${compname}.card |
---|
[2] | 888 | |
---|
[544] | 889 | # Save Restarts files |
---|
| 890 | #-------------------- |
---|
| 891 | IGCM_debug_Print 2 "Save Restart files for ${comp} : ${compname} component." |
---|
| 892 | IGCM_card_DefineArrayFromOption ${card} RestartFiles List |
---|
| 893 | ListFilesName=${compname}_RestartFiles_List |
---|
| 894 | eval FileName0=\${${ListFilesName}[0]} > /dev/null 2>&1 |
---|
| 895 | |
---|
| 896 | if ( [ X${FileName0} != X${NULL_STR} ] && [ X${FileName0} != XNONE ] ) ; then |
---|
| 897 | eval NbFiles=\${#${ListFilesName}[@]} > /dev/null 2>&1 |
---|
| 898 | |
---|
| 899 | (( i=0 )) |
---|
| 900 | until [ $i -ge $NbFiles ]; do |
---|
| 901 | eval file_in_=\${${ListFilesName}[$i]} > /dev/null 2>&1 |
---|
| 902 | eval file_in=${file_in_} |
---|
[2] | 903 | |
---|
[544] | 904 | (( i_ = i+1 )) |
---|
| 905 | eval file_out_=\${${ListFilesName}[$i_]} > /dev/null 2>&1 |
---|
| 906 | eval file_out=${file_out_} |
---|
[151] | 907 | |
---|
[544] | 908 | (( i_ = i+2 )) |
---|
| 909 | eval file_outin_=\${${ListFilesName}[$i_]} > /dev/null 2>&1 |
---|
| 910 | eval file_outin=${file_outin_} |
---|
[151] | 911 | |
---|
[544] | 912 | generic_restart_file_name_in=$( basename ${file_in} .nc ) |
---|
| 913 | generic_restart_file_name_out=$( basename ${config_UserChoices_JobName}_${PeriodDateEnd}_${file_out} .nc ) |
---|
| 914 | generic_restart_file_name_outin=$( basename ${file_outin} .nc ) |
---|
| 915 | |
---|
| 916 | nb_restart_file=$( ls ${generic_restart_file_name_in}_????.nc 2>/dev/null | wc -l ) |
---|
| 917 | if [ ${nb_restart_file} -gt 1 ] ; then |
---|
| 918 | j=0 |
---|
| 919 | until [ $j -ge $nb_restart_file ]; do |
---|
| 920 | j4=${j} |
---|
| 921 | #eval IGCM_sys_Put_Rest ${generic_restart_file_name_in}_${j4}.nc \${R_OUT_${comp}_R}/${generic_restart_file_name_out}_${j4}.nc |
---|
| 922 | eval IGCM_sys_PutBuffer_Rest ${generic_restart_file_name_in}_${j4}.nc \${R_BUF_${comp}_R}/${generic_restart_file_name_out}_${j4}.nc |
---|
| 923 | if [ ! ${file_in} = ${file_outin} ] ; then |
---|
| 924 | if ( ${ExitFlag} ) ; then |
---|
| 925 | echo "IGCM_sys_Mv ${generic_restart_file_name_in}_${j4}.nc ${generic_restart_file_name_outin}_${j4}.nc not executed." |
---|
| 926 | else |
---|
| 927 | IGCM_sys_Mv ${generic_restart_file_name_in}_${j4}.nc ${generic_restart_file_name_outin}_${j4}.nc |
---|
| 928 | fi |
---|
| 929 | fi |
---|
| 930 | (( j=j+1 )) |
---|
| 931 | done |
---|
[2] | 932 | else |
---|
[544] | 933 | #eval IGCM_sys_Put_Rest ${file_in} \${R_OUT_${comp}_R}/${config_UserChoices_JobName}_${PeriodDateEnd}_${file_out} |
---|
| 934 | eval IGCM_sys_PutBuffer_Rest ${file_in} \${R_BUF_${comp}_R}/${config_UserChoices_JobName}_${PeriodDateEnd}_${file_out} |
---|
| 935 | if [ ! ${file_in} = ${file_outin} ] ; then |
---|
| 936 | if ( ${ExitFlag} ) ; then |
---|
| 937 | echo "IGCM_sys_Mv ${file_in} ${file_outin} not executed." |
---|
[2] | 938 | else |
---|
[544] | 939 | IGCM_sys_Mv ${file_in} ${file_outin} |
---|
[2] | 940 | fi |
---|
[544] | 941 | fi |
---|
[2] | 942 | fi |
---|
| 943 | |
---|
[544] | 944 | (( i=i+3 )) |
---|
| 945 | done |
---|
| 946 | else |
---|
| 947 | if [ X${FileName0} != XNONE ] ; then |
---|
| 948 | IGCM_debug_Exit "IGCM_comp_Finalize : No file in restart list for ${compname}." |
---|
| 949 | else |
---|
| 950 | IGCM_debug_Print 1 "IGCM_comp_Finalize : NONE specified in Restart List ${compname}." |
---|
| 951 | fi |
---|
| 952 | fi |
---|
[2] | 953 | |
---|
[544] | 954 | # Save Output files |
---|
| 955 | #------------------ |
---|
| 956 | IGCM_debug_Print 2 "Save Output files for ${comp} : ${compname} component." |
---|
| 957 | IGCM_card_DefineArrayFromOption ${card} OutputFiles List |
---|
| 958 | ListFilesName=${compname}_OutputFiles_List |
---|
| 959 | eval FileName0=\${${ListFilesName}[0]} > /dev/null 2>&1 |
---|
[2] | 960 | |
---|
[544] | 961 | if [ X${FileName0} != X${NULL_STR} ] ; then |
---|
| 962 | eval NbFiles=\${#${ListFilesName}[@]} > /dev/null 2>&1 |
---|
[149] | 963 | |
---|
[544] | 964 | (( i=0 )) |
---|
| 965 | until [ $i -ge $NbFiles ]; do |
---|
| 966 | SaveOnArchive=true |
---|
| 967 | eval file_in_=\${${ListFilesName}[$i]} > /dev/null 2>&1 |
---|
| 968 | eval file_in=${file_in_} |
---|
| 969 | (( i_ = i+1 )) |
---|
| 970 | eval file_out_=\${${ListFilesName}[$i_]} > /dev/null 2>&1 |
---|
| 971 | eval file_out=${file_out_} |
---|
| 972 | (( i_ = i+2 )) |
---|
| 973 | eval flag_post=\${${ListFilesName}[$i_]} > /dev/null 2>&1 |
---|
| 974 | # |
---|
| 975 | generic_file_name=$( basename ${file_in} .nc ) |
---|
| 976 | nb_rebuild_file=$( ls | grep "^${generic_file_name}_[0-9]*.nc" | wc -l ) |
---|
| 977 | # |
---|
| 978 | if ( [ ${nb_rebuild_file} -eq 1 ] && [ -f ${generic_file_name}_0000.nc ] ) ; then |
---|
| 979 | IGCM_debug_Print 2 "Parallelism with 1 process. Rebuilding ${file_in} not needed" |
---|
| 980 | IGCM_sys_Mv ${generic_file_name}_0000.nc ${file_in} |
---|
| 981 | elif [ ${nb_rebuild_file} -gt 1 ] ; then |
---|
| 982 | IGCM_debug_Print 2 "Parallelism detected rebuilding ${file_in} is needed" |
---|
[545] | 983 | if [ X${AsynchronousRebuild} = Xfalse ] ; then |
---|
[544] | 984 | IGCM_debug_Print 2 "Rebuilding ${file_in} online" |
---|
| 985 | IGCM_sys_rebuild ${file_in} ${generic_file_name}_*.nc |
---|
| 986 | else |
---|
| 987 | IGCM_debug_Print 2 "Preparing offline rebuild for ${file_in}" |
---|
| 988 | [ ! -d ${RUN_DIR}/REBUILD_${PeriodDateBegin} ] && IGCM_sys_Mkdir ${RUN_DIR}/REBUILD_${PeriodDateBegin} |
---|
| 989 | IGCM_sys_Mv ${generic_file_name}_????.nc ${RUN_DIR}/REBUILD_${PeriodDateBegin} |
---|
| 990 | |
---|
| 991 | # Prepare headers for the shell dedicated to offline rebuild |
---|
| 992 | if [ ! -f ${RUN_DIR}/REBUILD_${PeriodDateBegin}/rebuild.ksh ] ; then |
---|
| 993 | if [ $DRYRUN -le 1 ]; then |
---|
| 994 | echo "#!/bin/ksh " > ${RUN_DIR}/REBUILD_${PeriodDateBegin}/rebuild.ksh |
---|
| 995 | echo "function IGCM_FlushRebuild " >> ${RUN_DIR}/REBUILD_${PeriodDateBegin}/rebuild.ksh |
---|
| 996 | echo "{ " >> ${RUN_DIR}/REBUILD_${PeriodDateBegin}/rebuild.ksh |
---|
| 997 | echo "IGCM_debug_PushStack \"IGCM_FlushRebuild\" " >> ${RUN_DIR}/REBUILD_${PeriodDateBegin}/rebuild.ksh |
---|
| 998 | echo "echo " >> ${RUN_DIR}/REBUILD_${PeriodDateBegin}/rebuild.ksh |
---|
| 999 | echo "IGCM_debug_Print 1 \"IGCM_FlushRebuild\" " >> ${RUN_DIR}/REBUILD_${PeriodDateBegin}/rebuild.ksh |
---|
| 1000 | echo "echo " >> ${RUN_DIR}/REBUILD_${PeriodDateBegin}/rebuild.ksh |
---|
| 1001 | echo "export R_SAVE=${R_SAVE} " >> ${RUN_DIR}/REBUILD_${PeriodDateBegin}/rebuild.ksh |
---|
| 1002 | echo "export config_UserChoices_JobName=${config_UserChoices_JobName} " >> ${RUN_DIR}/REBUILD_${PeriodDateBegin}/rebuild.ksh |
---|
| 1003 | fi |
---|
| 1004 | fi |
---|
| 1005 | # Prepare the shell dedicated to offline rebuild |
---|
| 1006 | if [ $DRYRUN -le 1 ]; then |
---|
| 1007 | echo "IGCM_sys_rebuild ${file_in} ${generic_file_name}_*.nc" >> ${RUN_DIR}/REBUILD_${PeriodDateBegin}/rebuild.ksh |
---|
| 1008 | echo "IGCM_debug_Verif_Exit_Post " >> ${RUN_DIR}/REBUILD_${PeriodDateBegin}/rebuild.ksh |
---|
| 1009 | fi |
---|
| 1010 | # |
---|
| 1011 | # Load Patch we need to apply and apply |
---|
| 1012 | if [ $DRYRUN -le 1 ]; then |
---|
| 1013 | if [ X$( eval echo \${${compname}_${flag_post}_Patches[0]} ) != X${NULL_STR} ]; then |
---|
| 1014 | for Patch in $( eval echo \${${compname}_${flag_post}_Patches[*]} ); do |
---|
| 1015 | echo ". ${libIGCM_POST}/libIGCM_post/IGCM_${Patch}.ksh" >> ${RUN_DIR}/REBUILD_${PeriodDateBegin}/rebuild.ksh |
---|
| 1016 | echo "IGCM_${Patch} ${file_in} " >> ${RUN_DIR}/REBUILD_${PeriodDateBegin}/rebuild.ksh |
---|
| 1017 | echo "IGCM_debug_Verif_Exit_Post " >> ${RUN_DIR}/REBUILD_${PeriodDateBegin}/rebuild.ksh |
---|
| 1018 | done |
---|
| 1019 | fi |
---|
| 1020 | fi |
---|
| 1021 | # |
---|
| 1022 | if [ $DRYRUN -le 1 ]; then |
---|
| 1023 | echo "IGCM_sys_Put_Out ${file_in} ${file_out} " >> ${RUN_DIR}/REBUILD_${PeriodDateBegin}/rebuild.ksh |
---|
| 1024 | echo "IGCM_debug_Verif_Exit_Post " >> ${RUN_DIR}/REBUILD_${PeriodDateBegin}/rebuild.ksh |
---|
| 1025 | echo "IGCM_sys_Rm ${generic_file_name}_*.nc " >> ${RUN_DIR}/REBUILD_${PeriodDateBegin}/rebuild.ksh |
---|
| 1026 | fi |
---|
| 1027 | SaveOnArchive=false |
---|
| 1028 | fi |
---|
| 1029 | fi |
---|
| 1030 | # |
---|
| 1031 | if [ ${SaveOnArchive} = true ] ; then |
---|
| 1032 | # |
---|
[545] | 1033 | # Rebuild has been done online or it was not needed |
---|
| 1034 | # |
---|
[544] | 1035 | # If we need to apply a patch we use TMP DIRECTORY before ARCHIVING if asynchronous rebuild is on |
---|
| 1036 | # |
---|
| 1037 | thereisapatch=$( eval echo \${${compname}_${flag_post}_Patches[0]} ) |
---|
[545] | 1038 | if ( [ ! X${thereisapatch} = X${NULL_STR} ] && [ X${AsynchronousRebuild} = Xtrue ] && [ -f ${file_in} ] ) ; then |
---|
| 1039 | [ ! -d ${RUN_DIR}/REBUILD_${PeriodDateBegin} ] && IGCM_sys_Mkdir ${RUN_DIR}/REBUILD_${PeriodDateBegin} |
---|
| 1040 | IGCM_sys_Mv ${file_in} ${RUN_DIR}/REBUILD_${PeriodDateBegin} |
---|
| 1041 | eval FileToBeDeleted[${#FileToBeDeleted[@]}]=REBUILD_${PeriodDateBegin}/${file_in} > /dev/null 2>&1 |
---|
| 1042 | # |
---|
| 1043 | if [ $DRYRUN -le 1 ]; then |
---|
| 1044 | if [ ! -f ${RUN_DIR}/REBUILD_${PeriodDateBegin}/rebuild.ksh ] ; then |
---|
| 1045 | echo "#!/bin/ksh " > ${RUN_DIR}/REBUILD_${PeriodDateBegin}/rebuild.ksh |
---|
| 1046 | echo "function IGCM_FlushRebuild " >> ${RUN_DIR}/REBUILD_${PeriodDateBegin}/rebuild.ksh |
---|
| 1047 | echo "{ " >> ${RUN_DIR}/REBUILD_${PeriodDateBegin}/rebuild.ksh |
---|
| 1048 | echo "IGCM_debug_PushStack \"IGCM_FlushRebuild\" " >> ${RUN_DIR}/REBUILD_${PeriodDateBegin}/rebuild.ksh |
---|
| 1049 | echo "echo " >> ${RUN_DIR}/REBUILD_${PeriodDateBegin}/rebuild.ksh |
---|
| 1050 | echo "IGCM_debug_Print 1 \"IGCM_FlushRebuild\" " >> ${RUN_DIR}/REBUILD_${PeriodDateBegin}/rebuild.ksh |
---|
| 1051 | echo "echo " >> ${RUN_DIR}/REBUILD_${PeriodDateBegin}/rebuild.ksh |
---|
| 1052 | echo "export R_SAVE=${R_SAVE} " >> ${RUN_DIR}/REBUILD_${PeriodDateBegin}/rebuild.ksh |
---|
| 1053 | echo "export config_UserChoices_JobName=${config_UserChoices_JobName} " >> ${RUN_DIR}/REBUILD_${PeriodDateBegin}/rebuild.ksh |
---|
| 1054 | fi |
---|
| 1055 | # |
---|
| 1056 | for Patch in $( eval echo \${${compname}_${flag_post}_Patches[*]} ); do |
---|
| 1057 | echo ". ${libIGCM_POST}/libIGCM_post/IGCM_${Patch}.ksh" >> ${RUN_DIR}/REBUILD_${PeriodDateBegin}/rebuild.ksh |
---|
| 1058 | echo "IGCM_${Patch} ${file_in} " >> ${RUN_DIR}/REBUILD_${PeriodDateBegin}/rebuild.ksh |
---|
| 1059 | echo "IGCM_debug_Verif_Exit_Post " >> ${RUN_DIR}/REBUILD_${PeriodDateBegin}/rebuild.ksh |
---|
| 1060 | done |
---|
[544] | 1061 | # |
---|
[545] | 1062 | echo "IGCM_sys_Put_Out ${file_in} ${file_out} " >> ${RUN_DIR}/REBUILD_${PeriodDateBegin}/rebuild.ksh |
---|
| 1063 | echo "IGCM_debug_Verif_Exit_Post " >> ${RUN_DIR}/REBUILD_${PeriodDateBegin}/rebuild.ksh |
---|
| 1064 | # |
---|
[544] | 1065 | fi |
---|
| 1066 | else |
---|
[545] | 1067 | # |
---|
| 1068 | # No Patch, No Asynchronous rebuild, online rebuild has been done or was not needed |
---|
| 1069 | # |
---|
[544] | 1070 | IGCM_sys_Put_Out ${file_in} ${file_out} |
---|
| 1071 | eval FileToBeDeleted[${#FileToBeDeleted[@]}]="${file_in}" > /dev/null 2>&1 |
---|
| 1072 | if [ ${nb_rebuild_file} -gt 1 ] ; then |
---|
| 1073 | for DelFile in $( ls | grep "${generic_file_name}[_0-9]*.nc" ) ; do |
---|
| 1074 | eval FileToBeDeleted[${#FileToBeDeleted[@]}]=${DelFile} > /dev/null 2>&1 |
---|
| 1075 | done |
---|
| 1076 | fi |
---|
| 1077 | fi |
---|
[2] | 1078 | fi |
---|
[544] | 1079 | (( i=i+3 )) |
---|
| 1080 | done |
---|
| 1081 | fi |
---|
[2] | 1082 | |
---|
[544] | 1083 | # Save Output Text files of models |
---|
| 1084 | #--------------------------------- |
---|
| 1085 | IGCM_debug_Print 2 "Save Output Text files for ${comp} : ${compname} component." |
---|
| 1086 | IGCM_card_DefineArrayFromOption ${card} OutputText List |
---|
| 1087 | ListTextName=${compname}_OutputText_List |
---|
| 1088 | |
---|
| 1089 | eval TextName0=\${${ListTextName}[0]} > /dev/null 2>&1 |
---|
| 1090 | if [ X${TextName0} != X${NULL_STR} ] ; then |
---|
| 1091 | eval NbFiles=\${#${ListTextName}[@]} > /dev/null 2>&1 |
---|
[2] | 1092 | |
---|
[544] | 1093 | (( i=0 )) |
---|
| 1094 | until [ $i -eq $NbFiles ]; do |
---|
| 1095 | eval file_in=\${${ListTextName}[$i]} > /dev/null 2>&1 |
---|
| 1096 | eval file_out=${PREFIX}_${file_in} |
---|
[2] | 1097 | |
---|
[544] | 1098 | (( i=i+1 )) |
---|
[429] | 1099 | |
---|
[544] | 1100 | unset list_file |
---|
| 1101 | #set +A list_file -- $( ls ${file_in}* | sort 2>/dev/null ) |
---|
| 1102 | # result for a a1 a10 a2 with file_in=a a a1 a2 a10 |
---|
| 1103 | set +A list_file -- $( [ -f ${file_in} ] && ls ${file_in} ; for i in $(ls ${file_in}* 2>/dev/null | sed "s/${file_in}//" | sort -n) ; do ls ${file_in}$i ; done ) |
---|
| 1104 | nlist_file=${#list_file[@]} |
---|
| 1105 | if [ ${nlist_file} -gt 1 ] ; then |
---|
| 1106 | if ( ${compactoutputs} ) ; then |
---|
| 1107 | IGCM_debug_Print 2 "Parallelism of Text Output with ${nlist_file} files." |
---|
| 1108 | IGCM_debug_Print 2 "Compact files in ${file_out} : " ${list_file[*]} |
---|
| 1109 | echo ${list_file[*]} > ${file_out} |
---|
| 1110 | echo "" >> ${file_out} |
---|
| 1111 | |
---|
| 1112 | (( i_ = 0 )) |
---|
| 1113 | for file in ${list_file[@]} |
---|
| 1114 | do |
---|
| 1115 | echo "_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ " >> ${file_out} |
---|
| 1116 | echo "| " ${i_} " " ${file} >> ${file_out} |
---|
| 1117 | echo "- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - " >> ${file_out} |
---|
| 1118 | cat ${file} | sed "s/\(.*\)/${i_}\1/" ${file} >> ${file_out} |
---|
| 1119 | echo "" >> ${file_out} |
---|
| 1120 | eval FileToBeDeleted[${#FileToBeDeleted[@]}]="${file}" > /dev/null 2>&1 |
---|
| 1121 | (( i_ = i_ + 1 )) |
---|
| 1122 | done |
---|
| 1123 | #eval IGCM_sys_Put_Out ${file_out} \${R_OUT_${comp}_D}/${file_out} |
---|
| 1124 | eval IGCM_sys_PutBuffer_Out ${file_out} \${R_BUF_${comp}_D}/${file_out} |
---|
| 1125 | eval FileToBeDeleted[${#FileToBeDeleted[@]}]="${file_out}" > /dev/null 2>&1 |
---|
[433] | 1126 | |
---|
[544] | 1127 | if ( ${ExecutionFail} ) ; then |
---|
| 1128 | IGCM_sys_Cp ${file_out} ${SUBMIT_DIR}/Debug |
---|
| 1129 | fi |
---|
| 1130 | else |
---|
| 1131 | for file in ${list_file[@]} |
---|
| 1132 | do |
---|
| 1133 | #eval IGCM_sys_Put_Out ${file} \${R_OUT_${comp}_D}/${PREFIX}_${file} |
---|
| 1134 | eval IGCM_sys_PutBuffer_Out ${file} \${R_BUF_${comp}_D}/${PREFIX}_${file} |
---|
| 1135 | eval FileToBeDeleted[${#FileToBeDeleted[@]}]="${file}" > /dev/null 2>&1 |
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[433] | 1136 | |
---|
[544] | 1137 | if ( ${ExecutionFail} ) ; then |
---|
| 1138 | IGCM_sys_Cp ${file} ${SUBMIT_DIR}/Debug/${PREFIX}_${file} |
---|
[2] | 1139 | fi |
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[544] | 1140 | done |
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| 1141 | fi |
---|
| 1142 | else |
---|
| 1143 | if ( [ -f ${file_in}_0000 ] || [ -f ${file_in}0 ] ) ; then |
---|
| 1144 | eval IGCM_sys_Mv ${file_in}* ${file_in} |
---|
| 1145 | fi |
---|
| 1146 | #eval IGCM_sys_Put_Out ${file_in} \${R_OUT_${comp}_D}/${file_out} |
---|
| 1147 | eval IGCM_sys_PutBuffer_Out ${file_in} \${R_BUF_${comp}_D}/${file_out} |
---|
| 1148 | eval FileToBeDeleted[${#FileToBeDeleted[@]}]="${file_in}" > /dev/null 2>&1 |
---|
[2] | 1149 | |
---|
[544] | 1150 | if ( ${ExecutionFail} ) ; then |
---|
| 1151 | IGCM_sys_Cp ${file_in} ${SUBMIT_DIR}/Debug/${file_out} |
---|
| 1152 | fi |
---|
| 1153 | fi |
---|
| 1154 | done |
---|
| 1155 | fi |
---|
| 1156 | echo |
---|
| 1157 | done |
---|
| 1158 | IGCM_debug_PopStack "IGCM_comp_Finalize" |
---|
[2] | 1159 | } |
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