[2] | 1 | #!/bin/ksh |
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| 2 | |
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| 3 | #************************************************************** |
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| 4 | # Author: Sebastien Denvil, Martial Mancip |
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| 5 | # Contact: Sebastien.Denvil@ipsl.jussieu.fr Martial.Mancip@ipsl.jussieu.fr |
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[4] | 6 | # $Date$ |
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[5] | 7 | # $Author$ |
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| 8 | # $Revision$ |
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[2] | 9 | # IPSL (2006) |
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| 10 | # This software is governed by the CeCILL licence see libIGCM/libIGCM_CeCILL.LIC |
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| 11 | # History: |
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| 12 | # Modification: |
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| 13 | # |
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| 14 | #************************************************************** |
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| 15 | |
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| 16 | #=================================== |
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| 17 | function IGCM_config_Initialize |
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| 18 | { |
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| 19 | IGCM_debug_PushStack "IGCM_config_Initialize" |
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| 20 | |
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| 21 | # Debug Print : |
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| 22 | echo |
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| 23 | IGCM_debug_Print 1 "IGCM_config_Initialize :" |
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| 24 | echo |
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| 25 | |
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| 26 | # Test modipsl tree existence. |
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| 27 | IGCM_sys_TestDir ${MODIPSL} |
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[67] | 28 | [ $? != 0 ] && IGCM_debug_Exit "IGCM_sys_TestDirArchive" |
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[2] | 29 | IGCM_sys_TestDir ${libIGCM} |
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[67] | 30 | [ $? != 0 ] && IGCM_debug_Exit "IGCM_sys_TestDirArchive" |
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[2] | 31 | IGCM_sys_TestDir ${R_EXE} |
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[67] | 32 | [ $? != 0 ] && IGCM_debug_Exit "IGCM_sys_TestDirArchive" |
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[2] | 33 | IGCM_sys_TestDir ${SUBMIT_DIR} |
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[67] | 34 | [ $? != 0 ] && IGCM_debug_Exit "IGCM_sys_TestDirArchive" |
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[2] | 35 | |
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| 36 | #================================== |
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| 37 | |
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| 38 | typeset option auxprint CompatibilityTag |
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| 39 | # Read libIGCM compatibility version in config.card |
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| 40 | IGCM_card_DefineVariableFromOption ${SUBMIT_DIR}/config.card Compatibility libIGCM |
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| 41 | eval CompatibilityTag=${config_Compatibility_libIGCM} > /dev/null 2>&1 |
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| 42 | |
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| 43 | if [ ! "${CompatibilityTag}" = "${libIGCM_CurrentTag}" ] ; then |
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| 44 | IGCM_debug_Exit "config.card is not compatible with libIGCM version ${libIGCM_CurrentTag} see libIGCM FAQ http://wiki.ipsl.jussieu.fr/wiki_ipsl/IGCMG/libIGCM/DocUtilisateur/FAQ ." |
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| 45 | fi |
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| 46 | |
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| 47 | #================================== |
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| 48 | IGCM_card_DefineArrayFromSection ${SUBMIT_DIR}/config.card UserChoices |
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| 49 | |
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| 50 | for option in ${config_UserChoices[*]} ; do |
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| 51 | IGCM_card_DefineVariableFromOption ${SUBMIT_DIR}/config.card UserChoices ${option} |
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| 52 | done |
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| 53 | |
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| 54 | IGCM_debug_Print 1 "DefineArrayFromOption : config_UserChoices" |
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| 55 | IGCM_debug_PrintVariables 3 config_UserChoices_JobName |
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| 56 | IGCM_debug_PrintVariables 3 config_UserChoices_LongName |
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| 57 | IGCM_debug_PrintVariables 3 config_UserChoices_TagName |
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| 58 | IGCM_debug_PrintVariables 3 config_UserChoices_CalendarType |
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| 59 | IGCM_debug_PrintVariables 3 config_UserChoices_DateBegin |
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| 60 | IGCM_debug_PrintVariables 3 config_UserChoices_DateEnd |
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| 61 | IGCM_debug_PrintVariables 3 config_UserChoices_PeriodLength |
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| 62 | |
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| 63 | #================================== |
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| 64 | |
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| 65 | IGCM_card_DefineArrayFromSection ${SUBMIT_DIR}/config.card ListOfComponents |
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| 66 | |
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| 67 | echo |
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| 68 | IGCM_debug_Print 1 "DefineArrayFromSection : ListOfComponents" |
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| 69 | IGCM_debug_Print 3 ${config_ListOfComponents[*]} |
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| 70 | echo |
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| 71 | |
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| 72 | NbComponents=${#config_ListOfComponents[*]} |
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| 73 | |
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| 74 | #================================== |
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| 75 | # Define principal executable |
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| 76 | |
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| 77 | IGCM_card_DefineArrayFromSection ${SUBMIT_DIR}/config.card Executable |
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| 78 | IGCM_card_DefineVariableFromOption ${SUBMIT_DIR}/config.card Executable Name |
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| 79 | |
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| 80 | #================================== |
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| 81 | # Define Outputs Name |
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| 82 | IGCM_debug_Print 1 "Define Script_Output_Prefix and Exe_Output" |
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| 83 | eval Script_Output_Prefix=${config_UserChoices_Script_Output_Prefix:='Script_Output'} |
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| 84 | IGCM_debug_Print 3 "Script_Output_Prefix = ${Script_Output_Prefix}" |
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| 85 | eval Exe_Output=out_${config_Executable_Name} |
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| 86 | IGCM_debug_Print 3 "Exe_Output = ${Exe_Output}" |
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| 87 | |
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| 88 | #================================== |
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| 89 | |
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| 90 | #===================================================================# |
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| 91 | # Prepare variables available for ${COMP}.card and ${COMP}.driver # |
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| 92 | # But available to any son functions # |
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| 93 | #===================================================================# |
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| 94 | |
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| 95 | # Convert yyyy-mm-dd date to gregorian yyyymmdd |
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| 96 | DateBegin=$( IGCM_date_ConvertFormatToGregorian ${config_UserChoices_DateBegin} ) |
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| 97 | DateEnd=$( IGCM_date_ConvertFormatToGregorian ${config_UserChoices_DateEnd} ) |
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| 98 | |
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| 99 | # Period Length In Days between DateBegin and DateEnd |
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| 100 | (( ExperienceLengthInDays=$( IGCM_date_DaysBetweenGregorianDate ${DateEnd} ${DateBegin} ) + 1 )) |
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| 101 | if [ ${ExperienceLengthInDays} -lt 0 ] ; then |
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| 102 | IGCM_debug_Print 1 "Problem with dates in config.card : ${DateEnd} < ${DateBegin} ! You must check that." |
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| 103 | IGCM_debug_Exit "IGCM_config_Initialize" " Wrong Dates." |
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| 104 | IGCM_debug_Verif_Exit |
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| 105 | fi |
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| 106 | |
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| 107 | # Day and Year of Initial State (Given in julian format) |
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| 108 | InitDay=$( expr $( IGCM_date_ConvertGregorianDateToJulian $DateBegin ) % 1000 ) |
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| 109 | InitYear=$( expr $( IGCM_date_ConvertGregorianDateToJulian $DateBegin ) / 1000 ) |
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| 110 | |
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| 111 | #================================== |
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| 112 | # Restarts : Gerneral rule or local for each component ? |
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| 113 | IGCM_card_DefineArrayFromSection ${SUBMIT_DIR}/config.card Restarts |
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| 114 | |
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| 115 | echo |
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| 116 | IGCM_debug_Print 1 "DefineArrayFromOption : config_Restarts" |
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| 117 | |
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| 118 | for option in ${config_Restarts[*]} ; do |
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| 119 | IGCM_card_DefineVariableFromOption ${SUBMIT_DIR}/config.card Restarts ${option} |
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| 120 | eval auxprint=\${config_Restarts_${option}} |
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| 121 | IGCM_debug_Print 3 "${option} : ${auxprint}" |
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| 122 | done |
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| 123 | |
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[47] | 124 | #================================== |
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| 125 | # Post : |
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| 126 | IGCM_card_DefineArrayFromSection ${SUBMIT_DIR}/config.card Post |
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| 127 | |
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[22] | 128 | echo |
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[47] | 129 | IGCM_debug_Print 1 "DefineArrayFromOption : config_Post" |
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[22] | 130 | |
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[47] | 131 | for option in ${config_Post[*]} ; do |
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| 132 | IGCM_card_DefineVariableFromOption ${SUBMIT_DIR}/config.card Post ${option} |
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| 133 | eval auxprint=\${config_Post_${option}} |
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| 134 | IGCM_debug_Print 3 "${option} : ${auxprint}" |
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| 135 | done |
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| 136 | |
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[108] | 137 | IGCM_debug_Print 1 "For now force RebuildFromArchive=true in libIGM_config" |
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| 138 | config_Post_RebuildFromArchive=true |
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| 139 | IGCM_debug_Print 3 "RebuildFromArchive : true" |
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| 140 | |
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[2] | 141 | #================================================================# |
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| 142 | # Test and Prepare directories # |
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| 143 | #================================================================# |
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| 144 | |
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| 145 | # ==> 4 kinds of input files : |
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| 146 | # 1) R_INIT : Initial State Files (Etat0, carteveg) |
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| 147 | # 2) R_BC : Boundary Conditions (Forcages, lai) |
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| 148 | # 3) Parameters files (allready define through ${SUBMIT_DIR}) |
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| 149 | # 4) Restarts files (allready define in IGCM_config_Initialize) |
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| 150 | |
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| 151 | # Here we offer the possibility to redefine R_INIT, R_BC |
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| 152 | # and PeriodNb through config.card |
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| 153 | R_INIT=${config_UserChoices_R_INIT:=${R_IN}/INIT} |
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| 154 | echo |
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| 155 | IGCM_debug_Print 1 "(Re)Define R_INIT, R_BC and PeriodNb" |
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| 156 | IGCM_debug_Print 3 "R_INIT=${R_INIT}" |
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| 157 | R_BC=${config_UserChoices_R_BC:=${R_IN}/BC} |
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| 158 | IGCM_debug_Print 3 "R_BC=${R_BC}" |
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| 159 | PeriodNb=${config_UserChoices_PeriodNb:=${PeriodNb}} |
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| 160 | IGCM_debug_Print 3 "Loop in main Job with ${PeriodNb} period(s)" |
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| 161 | |
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| 162 | # Test Archive input/output. |
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| 163 | IGCM_sys_TestDirArchive ${ARCHIVE} |
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[67] | 164 | [ $? != 0 ] && IGCM_debug_Exit "IGCM_sys_TestDirArchive" |
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[2] | 165 | IGCM_sys_TestDirArchive ${R_INIT} |
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[67] | 166 | [ $? != 0 ] && IGCM_debug_Exit "IGCM_sys_TestDirArchive" |
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[2] | 167 | IGCM_sys_TestDirArchive ${R_BC} |
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[67] | 168 | [ $? != 0 ] && IGCM_debug_Exit "IGCM_sys_TestDirArchive" |
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[2] | 169 | |
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| 170 | #==================================================== |
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| 171 | #R_SAVE : Job output directory |
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| 172 | R_SAVE=${R_OUT}/${config_UserChoices_TagName}/${config_UserChoices_JobName} |
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| 173 | |
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| 174 | if [ ! -f ${SUBMIT_DIR}/run.card ]; then |
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| 175 | IGCM_sys_MkdirArchive ${R_SAVE} |
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| 176 | else |
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| 177 | #Test state of run in run.card |
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| 178 | IGCM_card_DefineVariableFromOption ${SUBMIT_DIR}/run.card Configuration PeriodState |
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| 179 | if ( [ ${run_Configuration_PeriodState} != "Start" ] && [ ${run_Configuration_PeriodState} != "Running" ] && [ ${run_Configuration_PeriodState} != "OnQueue" ] && [ ${run_Configuration_PeriodState} != "Continue" ] ) ; then |
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| 180 | echo |
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| 181 | IGCM_debug_Print 1 "!!!! IGCM_config_Initialize Error PeriodState : " ${run_Configuration_PeriodState} "!!!!!!!!!!" |
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| 182 | echo |
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| 183 | IGCM_debug_Exit "IGCM_config_Initialize Error PeriodState : " ${run_Configuration_PeriodState} |
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| 184 | IGCM_debug_Verif_Exit |
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| 185 | fi |
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| 186 | fi |
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| 187 | IGCM_sys_TestDirArchive ${R_SAVE} |
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[67] | 188 | [ $? != 0 ] && IGCM_debug_Exit "IGCM_sys_TestDirArchive" |
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[2] | 189 | |
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| 190 | #==================================================== |
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| 191 | #R_OUT_KSH : Storage place for job output |
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| 192 | #R_OUT_EXE : Storage place for binary used during simulation |
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| 193 | R_OUT_KSH=${R_SAVE}/Out |
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| 194 | R_OUT_EXE=${R_SAVE}/Exe |
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| 195 | |
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| 196 | IGCM_debug_PopStack "IGCM_config_Initialize" |
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| 197 | } |
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| 198 | |
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| 199 | #=================================== |
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| 200 | function IGCM_config_PeriodStart |
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| 201 | { |
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| 202 | IGCM_debug_PushStack "IGCM_config_PeriodStart" |
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| 203 | |
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| 204 | echo |
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| 205 | IGCM_debug_Print 1 "IGCM_config_PeriodStart :" |
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| 206 | echo |
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| 207 | |
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| 208 | if [ ! -r ${SUBMIT_DIR}/run.card ]; then |
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| 209 | |
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| 210 | #================================================# |
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| 211 | # The file run.card doesn't exist # |
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| 212 | #================================================# |
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| 213 | |
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| 214 | eval FirstInitialize=true |
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| 215 | |
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| 216 | #copy initial run.card |
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| 217 | IGCM_sys_Cp ${SUBMIT_DIR}/run.card.init ${SUBMIT_DIR}/run.card |
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| 218 | |
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| 219 | IGCM_date_GetYearMonth $DateBegin year month |
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| 220 | |
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| 221 | case ${config_UserChoices_PeriodLength} in |
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[28] | 222 | *Y|*y) |
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| 223 | PeriodLengthInYears=$( echo ${config_UserChoices_PeriodLength} | awk -F '[yY]' '{print $1}' ) |
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| 224 | IGCM_debug_Print 1 "Number of years for PeriodLength : ${PeriodLengthInYears}" |
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| 225 | PeriodLengthInDays=0 |
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| 226 | i=0 |
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| 227 | until [ $i -ge $PeriodLengthInYears ] ; do |
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| 228 | (( PeriodLengthInDays = PeriodLengthInDays + $( IGCM_date_DaysInYear $(( year + i )) ) )) |
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| 229 | (( i=i+1 )) |
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| 230 | done |
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| 231 | ;; |
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| 232 | *M|*m) |
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| 233 | PeriodLengthInMonths=$( echo ${config_UserChoices_PeriodLength} | awk -F '[mM]' '{print $1}' ) |
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| 234 | IGCM_debug_Print 1 "Number of months for PeriodLength : ${PeriodLengthInMonths}" |
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| 235 | typeset year1 |
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| 236 | PeriodLengthInDays=0 |
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| 237 | year1=year |
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| 238 | i=0 |
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| 239 | until [ $i -ge $PeriodLengthInMonths ] ; do |
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| 240 | if [ $(( month + i )) -lt 13 ] ; then |
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| 241 | (( PeriodLengthInDays = PeriodLengthInDays + $( IGCM_date_DaysInMonth $year $(( month + i )) ) )) |
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| 242 | else |
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| 243 | (( PeriodLengthInDays = PeriodLengthInDays + $( IGCM_date_DaysInMonth $year $(( month + i - 12 )) ) )) |
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| 244 | fi |
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| 245 | (( i=i+1 )) |
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| 246 | done |
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| 247 | ;; |
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| 248 | *D|*d) |
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| 249 | PeriodLengthInDays=$( echo ${config_UserChoices_PeriodLength} | awk -F '[dD]' '{print $1}' ) ;; |
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[2] | 250 | *) |
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[28] | 251 | IGCM_debug_Exit "IGCM_config_PeriodStart " ${config_UserChoices_PeriodLength} " invalid period length : choose in *Y, *M, *D." |
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[2] | 252 | IGCM_debug_Verif_Exit ;; |
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| 253 | esac |
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| 254 | |
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| 255 | eval PeriodDateBegin=${DateBegin} > /dev/null 2>&1 |
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| 256 | PeriodDateEnd=$( IGCM_date_AddDaysToGregorianDate ${DateBegin} $( expr ${PeriodLengthInDays} - 1 ) ) |
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| 257 | eval CumulPeriod=1 > /dev/null 2>&1 |
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| 258 | |
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| 259 | #=================================================# |
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| 260 | # Creation and write updated run.card # |
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| 261 | #=================================================# |
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| 262 | |
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| 263 | #Correct run.card Configuration for this period |
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| 264 | IGCM_card_WriteOption ${SUBMIT_DIR}/run.card Configuration PeriodDateBegin ${PeriodDateBegin} |
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| 265 | IGCM_card_WriteOption ${SUBMIT_DIR}/run.card Configuration PeriodDateEnd ${PeriodDateEnd} |
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| 266 | IGCM_card_WriteOption ${SUBMIT_DIR}/run.card Configuration CumulPeriod ${CumulPeriod} |
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| 267 | IGCM_card_WriteOption ${SUBMIT_DIR}/run.card Configuration PeriodState "Running" |
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| 268 | |
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| 269 | else |
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| 270 | #================================================# |
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| 271 | # The file run.card allready exist # |
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| 272 | #================================================# |
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| 273 | |
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| 274 | eval FirstInitialize=false |
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| 275 | |
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| 276 | #Test state of run in run.card |
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| 277 | IGCM_card_DefineVariableFromOption ${SUBMIT_DIR}/run.card Configuration PeriodState |
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| 278 | if ( [ ${run_Configuration_PeriodState} != "Running" ] && [ ${run_Configuration_PeriodState} != "OnQueue" ] && [ ${run_Configuration_PeriodState} != "Continue" ] ) ; then |
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| 279 | echo |
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| 280 | IGCM_debug_Print 1 "!!!!!! IGCM_config_PeriodStart Error PeriodState : " ${run_Configuration_PeriodState} "!!!!!!!!!!" |
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| 281 | echo |
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| 282 | IGCM_debug_Exit "IGCM_config_PeriodStart Error PeriodState : " ${run_Configuration_PeriodState} |
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| 283 | IGCM_debug_Verif_Exit |
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| 284 | fi |
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| 285 | |
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| 286 | #===================================# |
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| 287 | # Read updated run.card # |
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| 288 | #===================================# |
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| 289 | |
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| 290 | IGCM_card_DefineVariableFromOption ${SUBMIT_DIR}/run.card Configuration OldPrefix |
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| 291 | IGCM_card_DefineVariableFromOption ${SUBMIT_DIR}/run.card Configuration PeriodDateBegin |
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| 292 | IGCM_card_DefineVariableFromOption ${SUBMIT_DIR}/run.card Configuration PeriodDateEnd |
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| 293 | IGCM_card_DefineVariableFromOption ${SUBMIT_DIR}/run.card Configuration CumulPeriod |
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| 294 | |
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| 295 | PeriodDateBegin=$( IGCM_date_ConvertFormatToGregorian ${run_Configuration_PeriodDateBegin} ) |
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| 296 | PeriodDateEnd=$( IGCM_date_ConvertFormatToGregorian ${run_Configuration_PeriodDateEnd} ) |
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| 297 | eval CumulPeriod="${run_Configuration_CumulPeriod}" > /dev/null 2>&1 |
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| 298 | |
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| 299 | if [ ${Period} = 1 ]; then |
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| 300 | # save last Job output |
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| 301 | typeset LastPeriod Last_Script_Output_Name |
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| 302 | (( LastPeriod=CumulPeriod-PeriodNb )) |
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[57] | 303 | Last_Script_Output_Name="${Script_Output_Prefix}_${config_UserChoices_JobName}.$( printf "%06d" ${LastPeriod} )" |
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[2] | 304 | #eval ls -l ${SUBMIT_DIR}/${Last_Script_Output_Name} |
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| 305 | #eval IGCM_sys_Put_Out ${SUBMIT_DIR}/${Last_Script_Output_Name} ${R_OUT_KSH}/${Last_Script_Output_Name} > /dev/null 2>&1 |
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| 306 | IGCM_debug_Print 1 "Try to save previous ksh job output" |
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| 307 | IGCM_sys_Cd ${SUBMIT_DIR}/ |
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| 308 | IGCM_sys_Put_Out ${Last_Script_Output_Name} ${R_OUT_KSH}/ |
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| 309 | IGCM_sys_Cd ${RUN_DIR} |
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| 310 | else |
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| 311 | unset FileToBeDeleted |
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| 312 | fi |
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| 313 | |
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| 314 | IGCM_date_GetYearMonth $PeriodDateBegin year month |
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| 315 | |
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| 316 | # Determine number of day(s) in PeriodLength : |
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| 317 | case ${config_UserChoices_PeriodLength} in |
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[28] | 318 | *Y|*y) |
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| 319 | PeriodLengthInYears=$( echo ${config_UserChoices_PeriodLength} | awk -F '[yY]' '{print $1}' ) |
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| 320 | IGCM_debug_Print 1 "Number of years for PeriodLength : ${PeriodLengthInYears}" |
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| 321 | PeriodLengthInDays=0 |
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| 322 | i=0 |
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| 323 | until [ $i -ge $PeriodLengthInYears ] ; do |
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| 324 | (( PeriodLengthInDays = PeriodLengthInDays + $( IGCM_date_DaysInYear $(( year + i )) ) )) |
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| 325 | (( i=i+1 )) |
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| 326 | done |
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| 327 | ;; |
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| 328 | *M|*m) |
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| 329 | PeriodLengthInMonths=$( echo ${config_UserChoices_PeriodLength} | awk -F '[mM]' '{print $1}' ) |
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| 330 | IGCM_debug_Print 1 "Number of months for PeriodLength : ${PeriodLengthInMonths}" |
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| 331 | typeset year1 |
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| 332 | PeriodLengthInDays=0 |
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| 333 | year1=year |
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| 334 | i=0 |
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| 335 | until [ $i -ge $PeriodLengthInMonths ] ; do |
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| 336 | if [ $(( month + i )) -lt 13 ] ; then |
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| 337 | (( PeriodLengthInDays = PeriodLengthInDays + $( IGCM_date_DaysInMonth $year $(( month + i )) ) )) |
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| 338 | else |
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| 339 | (( PeriodLengthInDays = PeriodLengthInDays + $( IGCM_date_DaysInMonth $year $(( month + i - 12 )) ) )) |
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| 340 | fi |
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| 341 | (( i=i+1 )) |
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| 342 | done |
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| 343 | ;; |
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| 344 | *D|*d) |
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| 345 | PeriodLengthInDays=$( echo ${config_UserChoices_PeriodLength} | awk -F '[dD]' '{print $1}' ) ;; |
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[2] | 346 | *) |
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[28] | 347 | IGCM_debug_Exit "IGCM_config_PeriodStart " ${config_UserChoices_PeriodLength} " invalid period length : choose in *Y, *M, *D." |
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[2] | 348 | IGCM_debug_Verif_Exit ;; |
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| 349 | esac |
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| 350 | |
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| 351 | IGCM_card_WriteOption ${SUBMIT_DIR}/run.card Configuration PeriodState "Running" |
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| 352 | |
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| 353 | fi |
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| 354 | OldPrefix=${config_UserChoices_JobName}_${PeriodDateEnd} |
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| 355 | |
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| 356 | #===================================================================# |
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| 357 | # Prepare variables available for ${COMP}.card and ${COMP}.driver # |
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| 358 | # But available to any son functions # |
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| 359 | #===================================================================# |
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| 360 | |
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| 361 | # Period Length In Days between DateBegin and DateCurrent (at end of period == PeriodDateEnd !) |
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| 362 | (( SimulationLengthInDays = $( IGCM_date_DaysBetweenGregorianDate ${PeriodDateEnd} ${DateBegin} ) + 1 )) |
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| 363 | |
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| 364 | # Debug Print : |
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| 365 | IGCM_debug_Print 1 "IGCM_config_PeriodStart : Before Execution" |
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| 366 | IGCM_debug_Print 3 "Year of simulation : ${year}" |
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| 367 | IGCM_debug_Print 3 "Month of simulation : ${month}" |
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| 368 | IGCM_debug_Print 3 "PeriodLengthInDays : ${PeriodLengthInDays}" |
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| 369 | IGCM_debug_Print 3 "PeriodDateBegin : ${PeriodDateBegin}" |
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| 370 | IGCM_debug_Print 3 "PeriodDateEnd : ${PeriodDateEnd}" |
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| 371 | IGCM_debug_Print 3 "SimulationLengthInDays : ${SimulationLengthInDays}" |
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| 372 | IGCM_debug_Print 3 "ExperienceLengthInDays : ${ExperienceLengthInDays}" |
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| 373 | |
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| 374 | #================================================================# |
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| 375 | # Prepare variables available for comp_finalyze # |
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| 376 | #================================================================# |
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| 377 | |
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| 378 | # Period for save files |
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| 379 | eval DatesPeriod=${PeriodDateBegin}_${PeriodDateEnd} > /dev/null 2>&1 |
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| 380 | |
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| 381 | # Prefix for save files of this period |
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| 382 | eval PREFIX=${config_UserChoices_JobName}_${DatesPeriod} > /dev/null 2>&1 |
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| 383 | |
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| 384 | # List of files that will be deleted in RUN_DIR after run |
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[52] | 385 | [ -f stack ] && FileToBeDeleted[0]="stack" |
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[2] | 386 | |
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| 387 | # Test if the same run as already been saved : |
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| 388 | if [ ${DRYRUN} -le 0 ] ; then |
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| 389 | if ( IGCM_sys_TestFileArchive ${R_OUT_KSH}/${PREFIX}_${Exe_Output} ) ; then |
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| 390 | IGCM_debug_Exit "IGCM_config_PeriodStart" "RErun an old job." |
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| 391 | IGCM_debug_Print 1 "Because of readonly permissions, you can't RErun a job when saved files" |
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| 392 | IGCM_debug_Print 1 " are still in the ARCHIVE directory. You must deleted those files, or " |
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| 393 | IGCM_debug_Print 1 " the whole ${R_SAVE} tree." |
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| 394 | IGCM_debug_Verif_Exit |
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| 395 | fi |
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| 396 | fi |
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| 397 | IGCM_debug_PopStack "IGCM_config_PeriodStart" |
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| 398 | } |
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| 399 | |
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| 400 | #=================================== |
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| 401 | function IGCM_config_PeriodEnd |
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| 402 | { |
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| 403 | IGCM_debug_PushStack "IGCM_config_PeriodEnd" |
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| 404 | |
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| 405 | echo |
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| 406 | IGCM_debug_Print 1 "IGCM_config_PeriodEnd :" |
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| 407 | echo |
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| 408 | |
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| 409 | #==================================# |
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| 410 | # Save Job output # |
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| 411 | #==================================# |
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| 412 | IGCM_sys_Put_Out ${Exe_Output} ${R_OUT_KSH}/${PREFIX}_${Exe_Output} |
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| 413 | eval FileToBeDeleted[${#FileToBeDeleted[@]}]="${Exe_Output}" |
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| 414 | |
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| 415 | typeset LS_comp LS_bin ExeDate ExeCpuLog ExeSize NextExeSize LastCompExeSize |
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| 416 | typeset comp i |
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| 417 | typeset ExeNameIn ExeNameOut |
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| 418 | |
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| 419 | #==================================# |
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| 420 | # Get last Exe Size # |
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| 421 | #==================================# |
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| 422 | |
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| 423 | (( i=0 )) |
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| 424 | if ( ${FirstInitialize} ) ; then |
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| 425 | run_Log_LastExeSize="" |
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| 426 | for comp in ${config_ListOfComponents[*]} ; do |
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| 427 | run_Log_LastExeSize[$i]=0 |
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| 428 | (( i=i+1 )) |
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| 429 | done |
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| 430 | else |
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| 431 | IGCM_card_DefineArrayFromOption ${SUBMIT_DIR}/run.card Log LastExeSize |
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| 432 | fi |
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| 433 | |
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| 434 | #==================================# |
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| 435 | # And Build ExeDate # |
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| 436 | #==================================# |
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| 437 | |
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| 438 | # ExeDate = ATM_Jun_12_09:34-SRF_Jun_12_09:34-OCE_Jun_12_09:34-ICE_Jun_12_09:34-CPL_Jun_12_09:33 |
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[57] | 439 | # Would be nice to have next line but no way to format ls output (need to ls -l --time-style "+%Y-%m-%dT%H:%M") |
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| 440 | # ExeDate = ATM_2009-06-12T09:34+SRF_2009-06-12T09:34+OCE_2009-06-12T09:34+ICE_2009-06-12T09:34+CPL_2009-06-12T09:34 |
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[2] | 441 | ExeDate="" |
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| 442 | NextExeSize="( " |
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| 443 | (( i=0 )) |
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| 444 | |
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| 445 | for comp in ${config_ListOfComponents[*]} ; do |
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| 446 | |
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| 447 | IGCM_debug_Print 1 ${comp} |
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| 448 | |
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| 449 | eval ExeNameIn=\${config_Executable_${comp}[0]} |
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| 450 | eval ExeNameOut=\${config_Executable_${comp}[1]} |
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| 451 | if [ X${ExeNameIn} = X\"\" ] ; then |
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| 452 | # If there is no exe file for this component |
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| 453 | (( ExeSize=0 )) |
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| 454 | else |
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| 455 | eval LS_bin=${R_EXE}/${ExeNameIn} |
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| 456 | IGCM_sys_FileSize ${LS_bin} ExeSize |
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| 457 | |
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[57] | 458 | set +A LS_comp -- $( LC_TIME=en_US ls -l ${LS_bin} ) |
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[2] | 459 | if [ X${ExeDate} = X ] ; then |
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| 460 | # First component exe date |
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| 461 | ExeDate=${comp}_${LS_comp[5]}_${LS_comp[6]} |
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| 462 | else |
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| 463 | ExeDate=${ExeDate}-${comp}_${LS_comp[5]}_${LS_comp[6]} |
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| 464 | fi |
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| 465 | ExeDate=${ExeDate}_${LS_comp[7]} |
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| 466 | |
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| 467 | eval FileToBeDeleted[${#FileToBeDeleted[@]}]=${ExeNameOut} |
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| 468 | fi |
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| 469 | |
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| 470 | if [ ${i} -eq 0 ] ; then |
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| 471 | # First component |
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| 472 | NextExeSize="( "${ExeSize} |
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| 473 | else |
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| 474 | NextExeSize=${NextExeSize}", "${ExeSize} |
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| 475 | fi |
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| 476 | eval LastCompExeSize=${run_Log_LastExeSize[$i]} |
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| 477 | (( i=i+1 )) |
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| 478 | |
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| 479 | if [ ${ExeSize} -ne ${LastCompExeSize} ] ; then |
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| 480 | if ( ${FirstInitialize} ) ; then |
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| 481 | IGCM_debug_Print 1 "Put first ${ExeNameIn} in ${R_OUT_EXE} !" |
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| 482 | else |
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| 483 | IGCM_debug_Print 1 "${ExeNameIn} has changed in ${R_EXE} !" |
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| 484 | fi |
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| 485 | eval IGCM_sys_Put_Out ${ExeNameOut} ${R_OUT_EXE}/${PREFIX}_${ExeNameIn} |
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| 486 | fi |
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| 487 | done |
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| 488 | |
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| 489 | if [ ${DRYRUN} -le 1 ] ; then |
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| 490 | typeset ExeCpuLog |
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| 491 | tail -1500 ${Exe_Output} > ${Exe_Output}_tail.txt |
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| 492 | ExeCpuLog=$( ${libIGCM}/libIGCM_sys/IGCM_add_out.awk ${Exe_Output}_tail.txt ) |
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| 493 | RET=$? |
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[57] | 494 | if [ $RET -eq 0 ] ; then |
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| 495 | # ExeCpuLog variable contents 5 fields |
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[92] | 496 | echo "${CumulPeriod} ${PeriodDateBegin} ${PeriodDateEnd} ${ExeCpuLog} ${ExeDate}" | \ |
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[57] | 497 | awk '{printf("# %11d | %15s | %15s | %19s | %19s | %15.5f | %15.5f | %15.5f | %s\n", \ |
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| 498 | $1,$2,$3,$4,$5,$6,$7,$8,$9)}' >> ${SUBMIT_DIR}/run.card |
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[2] | 499 | fi |
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| 500 | eval FileToBeDeleted[${#FileToBeDeleted[@]}]="${Exe_Output}_tail.txt" |
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| 501 | fi |
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| 502 | |
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| 503 | NextExeSize=${NextExeSize}" )" |
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| 504 | IGCM_card_WriteOption ${SUBMIT_DIR}/run.card Log LastExeSize "${NextExeSize}" |
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| 505 | |
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| 506 | # All was right ? no ? then we stop. |
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| 507 | IGCM_debug_Verif_Exit |
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| 508 | |
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| 509 | # If all was OK, we can delete all files not necessary for next Job |
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[92] | 510 | IGCM_debug_Print 1 "Files that will be deleted before next period-run : " |
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[2] | 511 | |
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| 512 | if [ ${DRYRUN} -le 2 ] ; then |
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[92] | 513 | for f in ${FileToBeDeleted[@]} ; do ls -la $f ; rm -f $f ; done |
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[2] | 514 | else |
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| 515 | echo ${FileToBeDeleted[@]} |
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| 516 | fi |
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| 517 | |
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| 518 | #=================================================# |
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| 519 | # Determine next computed period # |
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| 520 | #=================================================# |
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| 521 | |
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| 522 | PeriodDateBegin=$( IGCM_date_AddDaysToGregorianDate ${PeriodDateEnd} 1 ) |
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| 523 | IGCM_date_GetYearMonth $PeriodDateBegin year month |
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| 524 | |
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| 525 | # Determine number of day(s) in PeriodLength : |
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| 526 | case ${config_UserChoices_PeriodLength} in |
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[28] | 527 | *Y|*y) |
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| 528 | PeriodLengthInYears=$( echo ${config_UserChoices_PeriodLength} | awk -F '[yY]' '{print $1}' ) |
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| 529 | IGCM_debug_Print 1 "Number of years for PeriodLength : ${PeriodLengthInYears}" |
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| 530 | PeriodLengthInDays=0 |
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| 531 | i=0 |
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| 532 | until [ $i -ge $PeriodLengthInYears ] ; do |
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| 533 | (( PeriodLengthInDays = PeriodLengthInDays + $( IGCM_date_DaysInYear $(( year + i )) ) )) |
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| 534 | (( i=i+1 )) |
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| 535 | done |
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| 536 | ;; |
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[51] | 537 | *M|*m) |
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[28] | 538 | PeriodLengthInMonths=$( echo ${config_UserChoices_PeriodLength} | awk -F '[mM]' '{print $1}' ) |
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| 539 | IGCM_debug_Print 1 "Number of months for PeriodLength : ${PeriodLengthInMonths}" |
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| 540 | typeset year1 |
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| 541 | PeriodLengthInDays=0 |
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| 542 | year1=year |
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| 543 | i=0 |
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| 544 | until [ $i -ge $PeriodLengthInMonths ] ; do |
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| 545 | if [ $(( month + i )) -lt 13 ] ; then |
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| 546 | (( PeriodLengthInDays = PeriodLengthInDays + $( IGCM_date_DaysInMonth $year $(( month + i )) ) )) |
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| 547 | else |
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| 548 | (( PeriodLengthInDays = PeriodLengthInDays + $( IGCM_date_DaysInMonth $year $(( month + i - 12 )) ) )) |
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| 549 | fi |
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| 550 | (( i=i+1 )) |
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| 551 | done |
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| 552 | ;; |
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| 553 | *D|*d) |
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| 554 | PeriodLengthInDays=$( echo ${config_UserChoices_PeriodLength} | awk -F '[dD]' '{print $1}' ) ;; |
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[2] | 555 | esac |
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| 556 | PeriodDateEnd=$( IGCM_date_AddDaysToGregorianDate ${PeriodDateBegin} $( expr ${PeriodLengthInDays} - 1 ) ) |
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| 557 | |
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| 558 | # Debug Print : |
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| 559 | echo |
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| 560 | IGCM_debug_Print 1 "IGCM_config_PeriodEnd : Preparing Next Execution" |
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| 561 | IGCM_debug_Print 3 "PeriodDateBegin : ${PeriodDateBegin}" |
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| 562 | IGCM_debug_Print 3 "PeriodDateEnd : ${PeriodDateEnd}" |
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| 563 | IGCM_debug_Print 3 "PeriodLengthInDays : ${PeriodLengthInDays}" |
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| 564 | |
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| 565 | PeriodDateBegin=$( IGCM_date_ConvertFormatToHuman ${PeriodDateBegin} ) |
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| 566 | PeriodDateEnd=$( IGCM_date_ConvertFormatToHuman ${PeriodDateEnd} ) |
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| 567 | |
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| 568 | (( CumulPeriod = CumulPeriod + 1 )) |
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| 569 | |
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| 570 | # Debug Print : |
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| 571 | echo |
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| 572 | IGCM_debug_Print 3 "PeriodDateBegin Human : ${PeriodDateBegin}" |
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| 573 | IGCM_debug_Print 3 "PeriodDateEnd Human : ${PeriodDateEnd}" |
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| 574 | IGCM_debug_Print 3 "CumulPeriod : ${CumulPeriod}" |
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| 575 | |
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| 576 | #=================================================# |
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| 577 | # Write updated run.card # |
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| 578 | #=================================================# |
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| 579 | |
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| 580 | IGCM_card_WriteOption ${SUBMIT_DIR}/run.card Configuration OldPrefix ${OldPrefix} |
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| 581 | IGCM_card_WriteOption ${SUBMIT_DIR}/run.card Configuration PeriodDateBegin ${PeriodDateBegin} |
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| 582 | IGCM_card_WriteOption ${SUBMIT_DIR}/run.card Configuration PeriodDateEnd ${PeriodDateEnd} |
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| 583 | IGCM_card_WriteOption ${SUBMIT_DIR}/run.card Configuration CumulPeriod ${CumulPeriod} |
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| 584 | |
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| 585 | IGCM_debug_PopStack "IGCM_config_PeriodEnd" |
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| 586 | } |
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| 587 | |
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| 588 | #=================================== |
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| 589 | function IGCM_config_Finalize |
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| 590 | { |
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| 591 | IGCM_debug_PushStack "IGCM_config_Finalize" |
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| 592 | |
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| 593 | echo |
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| 594 | IGCM_debug_Print 1 "IGCM_config_Finalize :" |
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| 595 | echo |
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| 596 | |
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| 597 | # Supress Non Deleted Boundary files |
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| 598 | if [ ${DRYRUN} -le 2 ] ; then |
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| 599 | IGCM_comp_DelFixeBoundaryFiles |
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| 600 | ls -la |
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| 601 | fi |
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| 602 | |
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| 603 | if [ ${SimulationLengthInDays} -ge ${ExperienceLengthInDays} ] ; then |
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| 604 | |
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| 605 | #==========================# |
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| 606 | # End of entire simulation # |
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| 607 | #==========================# |
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| 608 | |
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| 609 | cat << END_MAIL > job_atlas.mail |
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| 610 | Dear ${LOGIN}, |
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| 611 | |
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| 612 | Simulation ${config_UserChoices_JobName} is finished on supercomputer `hostname`. |
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| 613 | Job started : ${DateBegin} |
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| 614 | Job ended : ${DateEnd} |
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| 615 | Ouput files are available in ${R_SAVE} |
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| 616 | END_MAIL |
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| 617 | |
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| 618 | mailx -s "${config_UserChoices_JobName} completed" ${USER} < job_atlas.mail |
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| 619 | IGCM_card_WriteOption ${SUBMIT_DIR}/run.card Configuration PeriodState "Completed" |
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| 620 | IGCM_debug_Print 1 "Normal End of computation." |
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| 621 | if ( $DEBUG_debug ) ; then |
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| 622 | echo |
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| 623 | IGCM_debug_Print 1 "Your files on ${R_OUT} :" |
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| 624 | IGCM_sys_Tree ${R_SAVE} |
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| 625 | fi |
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| 626 | else |
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| 627 | |
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| 628 | #=================# |
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| 629 | # Submit next job # |
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| 630 | #=================# |
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| 631 | |
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| 632 | IGCM_card_WriteOption ${SUBMIT_DIR}/run.card Configuration PeriodState "OnQueue" |
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| 633 | |
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| 634 | # Name of next Ksh Script output : |
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[57] | 635 | eval Script_Output="${Script_Output_Prefix}_${config_UserChoices_JobName}.$( printf "%06d" ${CumulPeriod} )" |
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[2] | 636 | |
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| 637 | IGCM_debug_Print 1 "Submit next job" |
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| 638 | # SUBMITTED NEXT JOB |
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| 639 | IGCM_sys_Cd ${SUBMIT_DIR} |
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| 640 | IGCM_sys_Qsub ${SUBMIT_DIR}/Job_${config_UserChoices_JobName} |
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| 641 | fi |
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| 642 | |
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| 643 | IGCM_debug_PopStack "IGCM_config_Finalize" |
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| 644 | } |
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| 645 | |
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| 646 | #=================================== |
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