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source: trunk/libIGCM/libIGCM_config/libIGCM_config.ksh @ 935

Last change on this file since 935 was 933, checked in by sdipsl, 11 years ago
properly remove RUN_DIR_PATH used by AA_job on curie. see #141 but add some check to be sure RUN_DIR_PATH do not point to important directory. Indeed within AA_Job you can overwrite RUN_DIR_PATH and define something like this: RUN_DIR_PATH=$SCRATCHDIR You don't want to erase your $SCRATCHDIR don't you
Property licence set to The following licence information concerns ONLY the libIGCM tools ================================================================== Copyright © Centre National de la Recherche Scientifique CNRS Commissariat à l'Énergie Atomique CEA libIGCM : Library for Portable Models Computation of IGCM Group. IGCM Group is the french IPSL Global Climate Model Group. This library is a set of shell scripts and functions whose purpose is the management of the initialization, the launch, the transfer of output files, the post-processing and the monitoring of datas produce by any numerical program on any plateforme. This software is governed by the CeCILL license under French law and abiding by the rules of distribution of free software. You can use, modify and/ or redistribute the software under the terms of the CeCILL license as circulated by CEA, CNRS and INRIA at the following URL "http://www.cecill.info". As a counterpart to the access to the source code and rights to copy, modify and redistribute granted by the license, users are provided only with a limited warranty and the software's author, the holder of the economic rights, and the successive licensors have only limited liability. In this respect, the user's attention is drawn to the risks associated with loading, using, modifying and/or developing or reproducing the software by the user in light of its specific status of free software, that may mean that it is complicated to manipulate, and that also therefore means that it is reserved for developers and experienced professionals having in-depth computer knowledge. Users are therefore encouraged to load and test the software's suitability as regards their requirements in conditions enabling the security of their systems and/or data to be ensured and, more generally, to use and operate it in the same conditions as regards security. The fact that you are presently reading this means that you have had knowledge of the CeCILL license and that you accept its terms. Property svn:keywords set to `Revision Author Date`
File size: 51.9 KB

Rev	Line
[2]	1	#!/bin/ksh
	2
	3	#**************************************************************
	4	# Author: Sebastien Denvil, Martial Mancip
[373]	5	# Contact: Sebastien.Denvil__at__ipsl.jussieu.fr Martial.Mancip__at__ipsl.jussieu.fr
	6	# $Revision:: $ Revision of last commit
	7	# $Author:: $ Author of last commit
	8	# $Date:: $ Date of last commit
[2]	9	# IPSL (2006)
	10	# This software is governed by the CeCILL licence see libIGCM/libIGCM_CeCILL.LIC
	11	#
	12	#**************************************************************
	13
	14	#===================================
[726]	15	function IGCM_config_CommonConfiguration
	16	{
	17	IGCM_debug_PushStack "IGCM_config_CommonConfiguration" $@
	18
	19	# Debug Print :
[769]	20	[ ${Verbosity} -gt 0 ] && echo
[726]	21	IGCM_debug_Print 1 "IGCM_config_CommonConfiguration" $@
	22
	23	# config.card path
	24	configPath=$1
	25
	26	#==================================
	27	typeset option auxprint CompatibilityTag
	28
	29	#==================================
	30	# Read libIGCM compatibility version in config.card
	31	IGCM_card_DefineVariableFromOption ${configPath} Compatibility libIGCM
	32	eval CompatibilityTag=${config_Compatibility_libIGCM} > /dev/null 2>&1
	33
	34	if [ ! "${CompatibilityTag}" = "${libIGCM_CurrentTag}" ] ; then
	35	IGCM_debug_Exit "config.card is not compatible with libIGCM version ${libIGCM_CurrentTag} see libIGCM FAQ http://wiki.ipsl.jussieu.fr/wiki_ipsl/IGCMG/libIGCM/DocUtilisateur/FAQ ."
	36	fi
	37
	38	#==================================
	39	# Read UserChoices section:
[769]	40	[ ${Verbosity} -gt 0 ] && echo
[726]	41	IGCM_debug_Print 1 "DefineArrayFromOption : config_UserChoices"
	42
	43	IGCM_card_DefineArrayFromSection ${configPath} UserChoices
	44	for option in ${config_UserChoices[*]} ; do
	45	IGCM_card_DefineVariableFromOption ${configPath} UserChoices ${option}
	46	eval auxprint=\${config_UserChoices_${option}}
	47	IGCM_debug_Print 3 "${option} : ${auxprint}"
	48	done
	49
	50	#==================================
	51	# Read Ensemble section:
[769]	52	[ ${Verbosity} -gt 0 ] && echo
[726]	53	IGCM_debug_Print 1 "DefineArrayFromOption : config_Ensemble"
	54
	55	IGCM_card_DefineArrayFromSection ${configPath} Ensemble
	56	for option in ${config_Ensemble[*]} ; do
	57	IGCM_card_DefineVariableFromOption ${configPath} Ensemble ${option}
	58	eval auxprint=\${config_Ensemble_${option}}
	59	IGCM_debug_Print 3 "${option} : ${auxprint}"
	60	done
	61
	62	#==================================
	63	# Read Post section:
[769]	64	[ ${Verbosity} -gt 0 ] && echo
[726]	65	IGCM_debug_Print 1 "DefineArrayFromOption : config_Post"
	66
	67	IGCM_card_DefineArrayFromSection ${configPath} Post
	68	for option in ${config_Post[*]} ; do
	69	IGCM_card_DefineVariableFromOption ${configPath} Post ${option}
	70	eval auxprint=\${config_Post_${option}}
	71	IGCM_debug_Print 3 "${option} : ${auxprint}"
	72	done
[769]	73	[ ${Verbosity} -gt 0 ] && echo
[726]	74
[728]	75	#==================================
	76	# Define default value to keep compatibility with previous card: means before changes due to TGCC
	77	# Apply some overrules to ensure proper usage of computing centres resources
[804]	78	#
[728]	79	if [ X${PackDefault} = Xtrue ] ; then
	80	# If we DO apply pack in this computing center
	81	IGCM_debug_Print 1 "Due to inodes policy OVERRULE RebuildFromArchive value to NONE"
	82	config_Post_RebuildFromArchive=NONE
	83	if [ X${config_UserChoices_SpaceName} = XTEST ]; then
	84	# TEST simulations will not be packed and will stay on SCRATCHDIR filesystem
	85	IGCM_debug_Print 1 "SpaceName=TEST. OVERRULE PackFrequency to NONE"
	86	IGCM_debug_Print 1 "SpaceName=TEST. OVERRULE destination path directories"
	87	config_Post_PackFrequency=NONE
	88	IGCM_sys_ChangeArchive
	89	else
	90	# Default to RebuildFrequency if nothing has been set up related to PackFrequency
	91	[ X${config_Post_PackFrequency} = X ] && config_Post_PackFrequency=${config_Post_RebuildFrequency}
	92	fi
	93	else
	94	# If we DO NOT apply pack in this computing center
	95	config_Post_PackFrequency=NONE
	96	fi
	97
[726]	98	#====================================================
	99	# R_SAVE : Job output directory
	100	# R_BUFR : Job output buffered directory
	101
	102	if ( [ ! X${config_UserChoices_SpaceName} = X ] && [ ! X${config_UserChoices_ExperimentName} = X ] ) ; then
	103	FreeName=$( echo ${config_UserChoices_JobName} \| sed 's/.*_//' )
	104	if ( [ ! X${config_Ensemble_EnsembleName} = X ] && [ ! X${config_Ensemble_EnsembleDate} = X ] ) ; then
	105	R_SAVE=${R_OUT}/${config_UserChoices_TagName}/${config_UserChoices_SpaceName}/${config_UserChoices_ExperimentName}/${config_Ensemble_EnsembleName}/${config_Ensemble_EnsembleDate}/${FreeName}
	106	R_FIGR=${R_FIG}/${config_UserChoices_TagName}/${config_UserChoices_SpaceName}/${config_UserChoices_ExperimentName}/${config_Ensemble_EnsembleName}/${config_Ensemble_EnsembleDate}/${FreeName}
	107	R_BUFR=${R_BUF}/${config_UserChoices_TagName}/${config_UserChoices_SpaceName}/${config_UserChoices_ExperimentName}/${config_Ensemble_EnsembleName}/${config_Ensemble_EnsembleDate}/${FreeName}
	108	R_DODS=${config_UserChoices_TagName}/${config_UserChoices_SpaceName}/${config_UserChoices_ExperimentName}/${config_Ensemble_EnsembleName}/${config_Ensemble_EnsembleDate}/${FreeName}
	109	else
	110	R_SAVE=${R_OUT}/${config_UserChoices_TagName}/${config_UserChoices_SpaceName}/${config_UserChoices_ExperimentName}/${FreeName}
	111	R_FIGR=${R_FIG}/${config_UserChoices_TagName}/${config_UserChoices_SpaceName}/${config_UserChoices_ExperimentName}/${FreeName}
	112	R_BUFR=${R_BUF}/${config_UserChoices_TagName}/${config_UserChoices_SpaceName}/${config_UserChoices_ExperimentName}/${FreeName}
	113	R_DODS=${config_UserChoices_TagName}/${config_UserChoices_SpaceName}/${config_UserChoices_ExperimentName}/${FreeName}
	114	fi
	115	else
	116	if ( [ ! X${config_Ensemble_EnsembleName} = X ] && [ ! X${config_Ensemble_EnsembleDate} = X ] ) ; then
	117	R_SAVE=${R_OUT}/${config_UserChoices_TagName}/${config_Ensemble_EnsembleName}/${config_Ensemble_EnsembleDate}/${config_UserChoices_JobName}
	118	R_FIGR=${R_FIG}/${config_UserChoices_TagName}/${config_Ensemble_EnsembleName}/${config_Ensemble_EnsembleDate}/${config_UserChoices_JobName}
	119	R_BUFR=${R_BUF}/${config_UserChoices_TagName}/${config_Ensemble_EnsembleName}/${config_Ensemble_EnsembleDate}/${config_UserChoices_JobName}
	120	R_DODS=${config_UserChoices_TagName}/${config_Ensemble_EnsembleName}/${config_Ensemble_EnsembleDate}/${config_UserChoices_JobName}
	121	else
	122	R_SAVE=${R_OUT}/${config_UserChoices_TagName}/${config_UserChoices_JobName}
	123	R_FIGR=${R_FIG}/${config_UserChoices_TagName}/${config_UserChoices_JobName}
	124	R_BUFR=${R_BUF}/${config_UserChoices_TagName}/${config_UserChoices_JobName}
	125	R_DODS=${config_UserChoices_TagName}/${config_UserChoices_JobName}
	126	fi
	127	fi
	128
[782]	129	#====================================================
	130	# Define REBUILD_DIR : where we store files needing rebuild process
	131	if [ X${config_Post_RebuildFromArchive} = Xtrue ] ; then
[804]	132	REBUILD_DIR=${R_SAVE}/REBUILD
[844]	133	if [ ! X${TaskType} = Xchecking ] ; then
	134	IGCM_sys_MkdirArchive ${REBUILD_DIR}
	135	fi
[782]	136	else
[804]	137	REBUILD_DIR=${R_BUFR}/REBUILD
[844]	138	if [ ! X${TaskType} = Xchecking ] ; then
	139	IGCM_sys_MkdirWork ${REBUILD_DIR}
	140	fi
[782]	141	fi
	142
[903]	143	#====================================================
	144	# DodsCopy : apply default value if not defined
	145	if ( [ X${config_Post_DodsCopy} = X${NULL_STR} ] \|\| [ X${config_Post_DodsCopy} = X ] ) ; then
	146	config_Post_DodsCopy=TRUE
	147	fi
	148
[726]	149	IGCM_debug_PopStack "IGCM_config_CommonConfiguration"
	150	}
	151
	152	#===================================
[2]	153	function IGCM_config_Initialize
	154	{
[544]	155	IGCM_debug_PushStack "IGCM_config_Initialize"
[2]	156
[544]	157	# Debug Print :
	158	echo
	159	IGCM_debug_Print 1 "IGCM_config_Initialize"
[2]	160
[862]	161	if [ ! -r ${SUBMIT_DIR}/run.card ] ; then
[544]	162	#================================================#
	163	# The file run.card doesn't exist #
	164	#================================================#
	165	FirstInitialize=true
	166	#copy initial run.card
	167	IGCM_sys_Cp ${SUBMIT_DIR}/run.card.init ${SUBMIT_DIR}/run.card
	168	IGCM_debug_Print 2 "run.card copied from run.card.init"
	169	else
	170	FirstInitialize=false
	171	IGCM_debug_Print 2 "run.card exists"
	172	fi
[443]	173
[544]	174	# Test modipsl tree existence.
	175	IGCM_sys_TestDir ${MODIPSL}
	176	[ $? != 0 ] && IGCM_debug_Exit "IGCM_sys_TestDir"
	177	IGCM_sys_TestDir ${libIGCM}
	178	[ $? != 0 ] && IGCM_debug_Exit "IGCM_sys_TestDir"
	179	IGCM_sys_TestDir ${R_EXE}
	180	[ $? != 0 ] && IGCM_debug_Exit "IGCM_sys_TestDir"
	181	IGCM_sys_TestDir ${SUBMIT_DIR}
	182	[ $? != 0 ] && IGCM_debug_Exit "IGCM_sys_TestDir"
[2]	183
[544]	184	if ( $DEBUG_debug ) ; then
	185	echo "Keep trace of inital SUBMIT_DIR : "
	186	ls -lta ${SUBMIT_DIR}
	187	fi
[144]	188
[544]	189	#==================================
	190	# Read libIGCM compatibility version in config.card
[726]	191	# Read UserChoices section
	192	# Read Ensemble section
	193	# Read Post section
	194	# Define all netcdf output directories
[544]	195	#==================================
[726]	196	IGCM_config_CommonConfiguration ${SUBMIT_DIR}/config.card
[2]	197
[544]	198	#==================================
[619]	199	# Read ListOfComponents section:
[726]	200	echo
	201	IGCM_debug_Print 1 "DefineArrayFromSection : ListOfComponents"
	202
[544]	203	IGCM_card_DefineArrayFromSection ${SUBMIT_DIR}/config.card ListOfComponents
	204	for comp in ${config_ListOfComponents[*]} ; do
	205	IGCM_card_DefineArrayFromOption ${SUBMIT_DIR}/config.card ListOfComponents ${comp}
	206	done
	207	IGCM_debug_Print 3 ${config_ListOfComponents[*]}
[2]	208
[544]	209	#==================================
[726]	210	# Read Executable section:
[544]	211	IGCM_card_DefineArrayFromSection ${SUBMIT_DIR}/config.card Executable
[619]	212
[544]	213	#==================================
[726]	214	# Read Restarts section:
	215	# Restarts : Gerneral rule or local for each component.
	216	echo
	217	IGCM_debug_Print 1 "DefineArrayFromOption : config_Restarts"
	218
	219	IGCM_card_DefineArrayFromSection ${SUBMIT_DIR}/config.card Restarts
	220	for option in ${config_Restarts[*]} ; do
	221	IGCM_card_DefineVariableFromOption ${SUBMIT_DIR}/config.card Restarts ${option}
	222	eval auxprint=\${config_Restarts_${option}}
	223	IGCM_debug_Print 3 "${option} : ${auxprint}"
	224	done
	225
	226	#==================================
	227	# Define Job Outputs Name
	228	echo
[544]	229	IGCM_debug_Print 2 "Define Script_Output_Prefix and Exe_Output"
	230	eval Script_Output_Prefix=${config_UserChoices_Script_Output_Prefix:='Script_Output'}
	231	IGCM_debug_Print 3 "Script_Output_Prefix = ${Script_Output_Prefix}"
[682]	232	eval Exe_Output=out_execution
[544]	233	IGCM_debug_Print 3 "Exe_Output = ${Exe_Output}"
[2]	234
[544]	235	#===================================================================#
	236	# Prepare variables available for ${COMP}.card and ${COMP}.driver #
	237	# But available to any son functions #
	238	#===================================================================#
[2]	239
[544]	240	# Convert yyyy-mm-dd date to gregorian yyyymmdd
	241	DateBegin=$( IGCM_date_ConvertFormatToGregorian ${config_UserChoices_DateBegin} )
[619]	242	DateEnd=$( IGCM_date_ConvertFormatToGregorian ${config_UserChoices_DateEnd} )
[2]	243
[544]	244	# Period Length In Days between DateBegin and DateEnd
	245	(( ExperienceLengthInDays=$( IGCM_date_DaysBetweenGregorianDate ${DateEnd} ${DateBegin} ) + 1 ))
	246	if [ ${ExperienceLengthInDays} -lt 0 ] ; then
	247	IGCM_debug_Print 1 "Problem with dates in config.card : ${DateEnd} < ${DateBegin} ! You must check that."
	248	IGCM_debug_Exit "IGCM_config_Initialize" " Wrong Dates."
[619]	249	IGCM_debug_Verif_Exit
[544]	250	fi
[2]	251
[544]	252	# Day and Year of Initial State (Given in julian format)
	253	InitDay=$(( $( IGCM_date_ConvertGregorianDateToJulian $DateBegin ) % 1000 ))
	254	InitYear=$(( $( IGCM_date_ConvertGregorianDateToJulian $DateBegin ) / 1000 ))
[2]	255
[544]	256	#================================================================#
	257	# Test and Prepare directories #
	258	#================================================================#
[2]	259
[544]	260	# ==> 4 kinds of input files :
	261	# 1) R_INIT : Initial State Files (Etat0, carteveg)
	262	# 2) R_BC : Boundary Conditions (Forcages, lai)
	263	# 3) Parameters files (allready define through ${SUBMIT_DIR})
	264	# 4) Restarts files (allready define in IGCM_config_Initialize)
[2]	265
[544]	266	# Here we offer the possibility to redefine R_INIT, R_BC
	267	# and PeriodNb through config.card
	268	R_INIT=${config_UserChoices_R_INIT:=${R_IN}/INIT}
[731]	269	echo
[544]	270	IGCM_debug_Print 2 "(Re)Define R_INIT, R_BC and PeriodNb"
	271	IGCM_debug_Print 3 "R_INIT=${R_INIT}"
	272	R_BC=${config_UserChoices_R_BC:=${R_IN}/BC}
	273	IGCM_debug_Print 3 "R_BC=${R_BC}"
	274	PeriodNb=${config_UserChoices_PeriodNb:=${PeriodNb}}
	275	IGCM_debug_Print 3 "Loop in main Job with ${PeriodNb} period(s)"
[2]	276
[544]	277	# Test Archive input/output.
[726]	278	echo
[544]	279	IGCM_sys_TestDirArchive ${ARCHIVE}
	280	[ $? != 0 ] && IGCM_debug_Exit "IGCM_sys_TestDirArchive"
[2]	281
[771]	282	# SD ADA SPECIFIC #
	283	# TO FIX #
	284	#IGCM_sys_TestDirArchive ${R_IN}
	285	#[ $? != 0 ] && IGCM_debug_Exit "IGCM_sys_TestDirArchive"
	286
[619]	287	if ( ${FirstInitialize} ) ; then
[726]	288	IGCM_sys_MkdirArchive ${R_SAVE}
[805]	289	[ ! ${config_Post_PackFrequency} = NONE ] && IGCM_sys_Mkdir ${R_BUFR}
[544]	290	else
	291	IGCM_sys_TestDirArchive ${R_SAVE}
	292	[ $? != 0 ] && IGCM_debug_Exit "IGCM_sys_TestDirArchive ${R_SAVE}"
[2]	293
[805]	294	if [ ! ${config_Post_PackFrequency} = NONE ] ; then
	295	IGCM_sys_TestDir ${R_BUFR}
	296	[ $? != 0 ] && IGCM_debug_Exit "IGCM_sys_TestDir ${R_BUFR}"
	297	fi
[545]	298
[544]	299	#Test state of run in run.card
	300	IGCM_card_DefineVariableFromOption ${SUBMIT_DIR}/run.card Configuration PeriodState
[619]	301
[544]	302	if ( [ ${run_Configuration_PeriodState} != "Start" ] && [ ${run_Configuration_PeriodState} != "Running" ] && [ ${run_Configuration_PeriodState} != "OnQueue" ] && [ ${run_Configuration_PeriodState} != "Continue" ] ) ; then
[619]	303	echo
[544]	304	IGCM_debug_Print 1 "!! Error in run.card with PeriodState : " ${run_Configuration_PeriodState} "!!"
	305	IGCM_debug_Print 1 "Try running ${libIGCM}/clean_month.job to fix this"
	306	IGCM_debug_Exit
	307	IGCM_debug_Verif_Exit
[2]	308	fi
[544]	309	fi
[2]	310
[544]	311	#====================================================
[619]	312	# Experience type : DEB(ug), DEV(elopment), RUN
[544]	313	if [ X${JobType} != XRUN ] ; then
	314	echo
	315	echo "===================================================="
	316	echo "libIGCM JOB is NOT in RUN type mode."
	317	echo "!! OUTPUT files will NOT be PROTECTED !!"
	318	echo "Be carefull : you can ERASE the result of this job !"
[128]	319
[544]	320	case ${JobType} in
	321	DEB)
	322	echo "DEBUG mode : activation of 'set -vx' mode."
	323	echo "DEBUG mode : no protection for output files."
	324	echo "DEBUG mode : if active force asynchronous rebuild frequency to PeriodLength frequency."
	325	;;
	326	DEV)
	327	echo "DEVelopment mode : no protection for output files."
	328	echo "DEVelopment mode : if active force asynchronous rebuild frequency to PeriodLength frequency."
	329	;;
	330	esac
[166]	331
[544]	332	if ( [ X${config_Post_RebuildFrequency} != XNONE ] && [ ${DRYRUN} -eq 0 ] ) ; then
	333	if [ X${config_Post_RebuildFrequency} != X${config_UserChoices_PeriodLength} ] ; then
[619]	334	echo "------------"
	335	echo "WARNING : Job is NOT in RUN mode then we will force REBUILD Frequency"
[786]	336	echo " to PeriodLength : ${config_UserChoices_PeriodLength}"
[619]	337	echo "------------"
	338	config_Post_RebuildFrequency=${config_UserChoices_PeriodLength}
[544]	339	fi
[128]	340	fi
[544]	341	echo "===================================================="
	342	echo
	343	fi
[128]	344
[544]	345	#====================================================
	346	#R_OUT_KSH : Storage place for job output
	347	#R_OUT_EXE : Storage place for binary used during simulation
	348	R_OUT_KSH=${R_SAVE}/Out
	349	R_OUT_EXE=${R_SAVE}/Exe
[166]	350
[544]	351	#====================================================
	352	#R_BUF_KSH : Buffer place for job output
	353	#R_BUF_EXE : Buffer place for binary used during simulation
	354	R_BUF_KSH=${R_BUFR}/Out
	355	R_BUF_EXE=${R_BUFR}/Exe
	356
	357	IGCM_debug_PopStack "IGCM_config_Initialize"
[2]	358	}
	359
	360	#===================================
[890]	361	function IGCM_config_DaysInPeriodLength
[118]	362	{
[890]	363	IGCM_debug_PushStack "IGCM_config_DaysInPeriodLength"
[118]	364
[544]	365	typeset i
[124]	366
[544]	367	# Determine number of day(s) in PeriodLength :
	368	case ${config_UserChoices_PeriodLength} in
	369	Y\|y)
[619]	370	PeriodLengthInYears=$( echo ${config_UserChoices_PeriodLength} \| sed -e 's/[yY]//' )
[731]	371	echo
[544]	372	IGCM_debug_Print 2 "Number of years for PeriodLength : ${PeriodLengthInYears}"
	373	PeriodLengthInDays=0
	374	i=0
[619]	375	until [ $i -ge $PeriodLengthInYears ] ; do
	376	(( PeriodLengthInDays = PeriodLengthInDays + $( IGCM_date_DaysInYear $(( year + i )) ) ))
	377	(( i=i+1 ))
	378	done
[544]	379	;;
	380	M\|m)
[619]	381	PeriodLengthInMonths=$( echo ${config_UserChoices_PeriodLength} \| sed -e 's/[mM]//' )
[731]	382	echo
[544]	383	IGCM_debug_Print 2 "Number of months for PeriodLength : ${PeriodLengthInMonths}"
	384	PeriodLengthInDays=0
	385	i=0
[619]	386	until [ $i -ge $PeriodLengthInMonths ] ; do
[829]	387	if [ $(( 10#${month} + ${i} )) -lt 13 ] ; then
	388	(( PeriodLengthInDays = PeriodLengthInDays + $( IGCM_date_DaysInMonth $year $(( 10#${month} + ${i} )) ) ))
[619]	389	else
[829]	390	(( PeriodLengthInDays = PeriodLengthInDays + $( IGCM_date_DaysInMonth $year $(( 10#${month} + ${i} - 12 )) ) ))
[619]	391	fi
	392	(( i=i+1 ))
	393	done
[544]	394	;;
[619]	395	D\|d)
[544]	396	PeriodLengthInMonths=0
[731]	397	PeriodLengthInDays=$( echo ${config_UserChoices_PeriodLength} \| sed -e 's/[dD]//' )
	398	echo
	399	IGCM_debug_Print 2 "Number of days for PeriodLength : ${PeriodLengthInDays}";;
[619]	400	*)
[890]	401	IGCM_debug_Exit "IGCM_config_DaysInPeriodLength " ${config_UserChoices_PeriodLength} " invalid period length : choose in Y, M, *D."
[544]	402	IGCM_debug_Verif_Exit ;;
	403	esac
[118]	404
[890]	405	IGCM_debug_PopStack "IGCM_config_DaysInPeriodLength"
[380]	406	}
[118]	407
[380]	408	#===================================
[890]	409	function IGCM_config_DateCoherency
[891]	410	{
[890]	411	IGCM_debug_PushStack "IGCM_config_DateCoherency"
	412
	413	echo
	414	IGCM_debug_Print 1 "IGCM_config_DateCoherency"
	415	echo
	416
	417	typeset Length VerifiedPeriodDateBegin VerifiedPeriodDateEnd
	418
	419	# check coherency between (PeriodDateBegin, PeriodDateEnd) and (DateBegin, CumulPeriod, PeriodLength)
	420	# DateBegin + CumulPeriod*PeriodLength = PeriodDateBegin
	421	echo
[922]	422
[890]	423	case ${config_UserChoices_PeriodLength} in
	424	Y\|y)
	425	Length=$( IGCM_date_DaysInCurrentPeriod ${DateBegin} $(( ${CumulPeriod} * ${PeriodLengthInYears} ))Y )
	426	;;
	427	M\|m)
	428	Length=$( IGCM_date_DaysInCurrentPeriod ${DateBegin} $(( ${CumulPeriod} * ${PeriodLengthInMonths} ))M )
	429	;;
	430	D\|d)
	431	Length=$( IGCM_date_DaysInCurrentPeriod ${DateBegin} $(( ${CumulPeriod} * ${PeriodLengthInDays} ))D )
	432	;;
	433	esac
[892]	434	VerifiedPeriodDateEnd=$( IGCM_date_AddDaysToGregorianDate ${DateBegin} ${Length}-1 )
[890]	435
[892]	436	if [ ${VerifiedPeriodDateEnd} != ${PeriodDateEnd} ] ; then
	437	IGCM_debug_Print 1 "From run.card PeriodDateEnd is not consistent with DateBegin and CumulPeriod."
	438	IGCM_debug_Print 1 "We have DateBegin = ${DateBegin}"
	439	IGCM_debug_Print 1 "We have CumulPeriod = ${CumulPeriod}"
	440	IGCM_debug_Print 1 "We have PeriodDateEnd = ${PeriodDateEnd}"
	441	IGCM_debug_Print 1 "We have VerifiedPeriodDateEnd = ${VerifiedPeriodDateEnd}"
	442	IGCM_debug_Print 1 "You must have change run.card in an inconsistent way."
	443
	444	IGCM_debug_Exit "STOP here to avoid further issues."
	445	fi
	446
[890]	447	# PeriodDateBegin + PeriodLength = PeriodDateEnd
	448	VerifiedPeriodDateBegin=$( IGCM_date_AddDaysToGregorianDate ${VerifiedPeriodDateEnd} $(( ${PeriodLengthInDays} * -1 )) )
	449
	450	IGCM_debug_PopStack "IGCM_config_DateCoherency"
	451	}
	452
	453
	454	#===================================
[380]	455	function IGCM_config_Check
	456	{
[544]	457	IGCM_debug_PushStack "IGCM_config_Check"
[380]	458
[544]	459	# If one of the following modulo is not zero :
	460	# we will issue an error then explain and exit in
	461	# AA_job IGCM_debug_Verif_Exit call before binary submission
[380]	462
[544]	463	echo
	464	IGCM_debug_Print 1 "IGCM_config_Check"
	465	echo
	466
	467	typeset i
	468
[554]	469	# Check RebuildFrequency against key frequencies : PeriodLength ; PackFrequency ; TimeSeriesFrequency ; SeasonalFrequency
[545]	470	if ( [ ! X${config_Post_RebuildFrequency} = X${NULL_STR} ] && [ ! X${config_Post_RebuildFrequency} = XNONE ] ) ; then
[544]	471	AsynchronousRebuild=true
	472	IGCM_debug_Print 1 "Asynchronous rebuild has been activated."
[380]	473	echo
[544]	474	# modulo (RebuildFrequency and PeriodLength/TimeSeriesFrequency/SeasonalFrequency) must be zero
	475	IGCM_debug_Print 1 "Check coherence between RebuildFrequency and PeriodLength"
	476	IGCM_post_CheckModuloFrequency config_Post_RebuildFrequency config_UserChoices_PeriodLength
[554]	477	IGCM_debug_Print 1 "Check coherence between PackFrequency and RebuildFrequency"
	478	IGCM_post_CheckModuloFrequency config_Post_PackFrequency config_Post_RebuildFrequency
[544]	479	IGCM_debug_Print 1 "Check coherence between TimeSeriesFrequency and RebuildFrequency"
	480	IGCM_post_CheckModuloFrequency config_Post_TimeSeriesFrequency config_Post_RebuildFrequency
	481	IGCM_debug_Print 1 "Check coherence between SeasonalFrequency and RebuildFrequency"
	482	IGCM_post_CheckModuloFrequency config_Post_SeasonalFrequency config_Post_RebuildFrequency
	483	else
	484	AsynchronousRebuild=false
	485	IGCM_debug_Print 1 "Asynchronous rebuild has not been activated"
	486	IGCM_debug_Print 1 "Proceed with standard post-treatment pathway"
[380]	487	echo
[554]	488	#modulo (PeriodLength and TimeSeriesFrequency/SeasonalFrequency) must be zero
[544]	489	IGCM_debug_Print 1 "Check coherence between TimeSeriesFrequency and PeriodLength"
	490	IGCM_post_CheckModuloFrequency config_Post_TimeSeriesFrequency config_UserChoices_PeriodLength
	491	IGCM_debug_Print 1 "Check coherence between SeasonalFrequency and PeriodLength"
	492	IGCM_post_CheckModuloFrequency config_Post_SeasonalFrequency config_UserChoices_PeriodLength
	493	fi
[380]	494
[619]	495	# Check PackFrequency against other key frequencies
[554]	496	# Modulo (PackFrequency and TimeSeriesFrequency/SeasonalFrequency and PeriodLenght) must be zero
	497	if ( [ ! X${config_Post_PackFrequency} = X${NULL_STR} ] && [ ! X${config_Post_PackFrequency} = XNONE ] ) ; then
	498	Pack=true
	499	#
	500	IGCM_debug_Print 1 "Check coherence between PackFrequency and PeriodLength"
	501	IGCM_post_CheckModuloFrequency config_Post_PackFrequency config_UserChoices_PeriodLength
	502	IGCM_debug_Print 1 "Check coherence between TimeSeriesFrequency and PackFrequency"
	503	IGCM_post_CheckModuloFrequency config_Post_TimeSeriesFrequency config_Post_PackFrequency
	504	IGCM_debug_Print 1 "Check coherence between SeasonalFrequency and PackFrequency"
	505	IGCM_post_CheckModuloFrequency config_Post_SeasonalFrequency config_Post_PackFrequency
	506	else
	507	Pack=false
	508	fi
	509
[890]	510	# modulo (TimeSeriesFrequency and all Chunck2D) must be zero
[544]	511	NbJob=${#CHUNCK2D_SIZE[@]}
	512	i=0
	513	until [ $i -ge $NbJob ]; do
	514	value=${CHUNCK2D_SIZE[${i}]}
	515	IGCM_debug_Print 1 "Check coherence between All Chunck2D frequency and TimeSeriesFrequency"
	516	IGCM_post_CheckModuloFrequency value config_Post_TimeSeriesFrequency
[619]	517	case ${value} in
	518	Y\|y) ;;
[786]	519	*)
	520	IGCM_debug_Print 1 "All ChunckJob2D frequency must be expressed in year Y\|y in comp.card"
[544]	521	IGCM_debug_Exit "This will stop the job" ;;
	522	esac
	523	(( i=i+1 ))
	524	done
[387]	525
[890]	526	# modulo (TimeSeriesFrequency and all Chunck3D) must be zero
[544]	527	NbJob=${#CHUNCK3D_SIZE[@]}
	528	i=0
	529	until [ $i -ge $NbJob ]; do
	530	value=${CHUNCK3D_SIZE[${i}]}
	531	IGCM_debug_Print 1 "Check coherence between All Chunck3D frequency and TimeSeriesFrequency"
	532	IGCM_post_CheckModuloFrequency value config_Post_TimeSeriesFrequency
[619]	533	case ${value} in
	534	Y\|y) ;;
[786]	535	*)
	536	IGCM_debug_Print 1 "All ChunckJob3D frequency must be expressed in year Y\|y in comp.card"
[544]	537	IGCM_debug_Exit "This will stop the job" ;;
	538	esac
	539	(( i=i+1 ))
	540	done
[380]	541
[890]	542	# check to be sure there is enough space on temporary filesystems to run
[731]	543	echo
[651]	544	IGCM_debug_Print 1 "Check if there is enough space on temporary filesystem"
	545	IGCM_sys_check_quota
	546
[933]	547	# check to be sure that RUN_DIR_PATH, that will be removed is not pointing to an important directory
	548	echo
	549	IGCM_debug_Print 1 "Check where RUN_DIR_PATH variable is pointing to"
	550	IGCM_sys_check_path
	551
	552
[544]	553	IGCM_debug_PopStack "IGCM_config_Check"
[118]	554	}
	555
	556	#===================================
[2]	557	function IGCM_config_PeriodStart
	558	{
[544]	559	IGCM_debug_PushStack "IGCM_config_PeriodStart"
[2]	560
[544]	561	echo
	562	IGCM_debug_Print 1 "IGCM_config_PeriodStart"
	563	echo
[2]	564
[544]	565	if ( ${FirstInitialize} ) ; then
	566	#================================================#
	567	# Initialize date/period information #
	568	#================================================#
[2]	569
[890]	570	IGCM_date_GetYearMonthDay ${DateBegin} year month day
	571	IGCM_config_DaysInPeriodLength
[2]	572
[544]	573	eval PeriodDateBegin=${DateBegin} > /dev/null 2>&1
	574	PeriodDateEnd=$( IGCM_date_AddDaysToGregorianDate ${DateBegin} $(( ${PeriodLengthInDays} - 1 )) )
	575	eval CumulPeriod=1 > /dev/null 2>&1
[2]	576
[544]	577	#=================================================#
	578	# Write updated run.card #
	579	#=================================================#
[2]	580
[544]	581	#Correct run.card Configuration for this period
	582	IGCM_card_WriteOption ${SUBMIT_DIR}/run.card Configuration PeriodDateBegin ${PeriodDateBegin}
	583	IGCM_card_WriteOption ${SUBMIT_DIR}/run.card Configuration PeriodDateEnd ${PeriodDateEnd}
	584	IGCM_card_WriteOption ${SUBMIT_DIR}/run.card Configuration CumulPeriod ${CumulPeriod}
	585	if [ X$( grep "SubmitPath" ${SUBMIT_DIR}/run.card ) != X ] ; then
	586	IGCM_card_WriteOption ${SUBMIT_DIR}/run.card Configuration SubmitPath ${SUBMIT_DIR}
	587	fi
[427]	588
[544]	589	IGCM_card_WriteOption ${SUBMIT_DIR}/run.card Configuration PeriodState "Running"
[619]	590
[544]	591	else
	592	#================================================#
	593	# The file run.card allready exist #
	594	#================================================#
[2]	595
[544]	596	#Test state of run in run.card
	597	IGCM_card_DefineVariableFromOption ${SUBMIT_DIR}/run.card Configuration PeriodState
	598	if ( [ ${run_Configuration_PeriodState} != "Running" ] && [ ${run_Configuration_PeriodState} != "OnQueue" ] && [ ${run_Configuration_PeriodState} != "Continue" ] ) ; then
[619]	599	echo
[544]	600	IGCM_debug_Print 1 "!! Error in run.card with PeriodState : " ${run_Configuration_PeriodState} "!!"
	601	IGCM_debug_Print 1 "Try running ${libIGCM}/clean_month.job to fix this"
	602	echo
	603	IGCM_debug_Exit
	604	IGCM_debug_Verif_Exit
	605	fi
[2]	606
[544]	607	#===================================#
[786]	608	# Read updated run.card #
[544]	609	#===================================#
[2]	610
[544]	611	IGCM_card_DefineVariableFromOption ${SUBMIT_DIR}/run.card Configuration OldPrefix
	612	IGCM_card_DefineVariableFromOption ${SUBMIT_DIR}/run.card Configuration PeriodDateBegin
	613	IGCM_card_DefineVariableFromOption ${SUBMIT_DIR}/run.card Configuration PeriodDateEnd
	614	IGCM_card_DefineVariableFromOption ${SUBMIT_DIR}/run.card Configuration CumulPeriod
[2]	615
[544]	616	PeriodDateBegin=$( IGCM_date_ConvertFormatToGregorian ${run_Configuration_PeriodDateBegin} )
	617	PeriodDateEnd=$( IGCM_date_ConvertFormatToGregorian ${run_Configuration_PeriodDateEnd} )
	618	eval CumulPeriod="${run_Configuration_CumulPeriod}" > /dev/null 2>&1
[2]	619
[544]	620	LastPeriodDateEnd=$( echo ${run_Configuration_OldPrefix} \| sed -e "s/${config_UserChoices_JobName}_//" )
[471]	621
[544]	622	if [ ${Period} = 1 ]; then
[910]	623	# save last Job output and current run.card
	624	typeset Potential
	625	IGCM_sys_Cd ${SUBMIT_DIR}
	626	#
	627	IGCM_debug_Print 2 "Save previous ksh job output"
	628	for Potential in $( ls ${Script_Output_Prefix}_${config_UserChoices_JobName}.[0-9][0-9][0-9][0-9][0-9][0-9] ) ; do
	629	if [ X${Pack} = Xtrue ] ; then
[911]	630	( IGCM_sys_TestFileBuffer ${R_BUF_KSH}/${Potential} ) \|\| IGCM_sys_PutBuffer_Out ${Potential} ${R_BUF_KSH}/${Potential}.$$ rw
[910]	631	else
[911]	632	( IGCM_sys_TestFileArchive ${R_OUT_KSH}/${Potential} ) \|\| IGCM_sys_Put_Out ${Potential} ${R_OUT_KSH}/${Potential}.$$ rw
[910]	633	fi
	634	done
	635	#
	636	IGCM_debug_Print 2 "Save current run.card"
[544]	637	IGCM_card_CheckConflict run.card
[634]	638	if [ X${Pack} = Xtrue ] ; then
[910]	639	IGCM_sys_PutBuffer_Out ${SUBMIT_DIR}/run.card ${R_BUF_KSH}/run.card rw
[634]	640	else
[910]	641	IGCM_sys_Put_Out ${SUBMIT_DIR}/run.card ${R_OUT_KSH}/run.card rw
[634]	642	fi
[910]	643	#
[544]	644	IGCM_sys_Cd ${RUN_DIR}
	645	else
	646	unset FileToBeDeleted
	647	fi
[2]	648
[892]	649	# Determine number of day(s) in PeriodLength
[544]	650	IGCM_date_GetYearMonthDay $PeriodDateBegin year month day
[890]	651	IGCM_config_DaysInPeriodLength
[2]	652
[892]	653	# Check coherency between (PeriodDateBegin, PeriodDateEnd) and (DateBegin, CumulPeriod, PeriodLength)
	654	IGCM_config_DateCoherency
	655	# And EXIT if not OK
	656	IGCM_debug_Verif_Exit
	657
[544]	658	IGCM_card_WriteOption ${SUBMIT_DIR}/run.card Configuration PeriodState "Running"
[890]	659	fi
[2]	660
[890]	661	# Save for futur use
[544]	662	OldPrefix=${config_UserChoices_JobName}_${PeriodDateEnd}
[522]	663
[544]	664	# BEGIN: SHOULD GO IN A FUNCTION FROM libIGCM_date.ksh
	665	# Compute year_m1 and year_p1 (year minus 1Y and year plus 1Y)
	666	year_m1=$(( year - 1 ))
[619]	667	year_p1=$(( year + 1 ))
[544]	668	# Compute month_m1 (month minus 1M)
	669	# Compute yyyymm_m1 (yyyymm minus 1M)
[829]	670	month_m1=$(( 10#${month} - 1 ))
[544]	671	if [ ${month_m1} = 0 ]; then
	672	month_m1=12
	673	yyyymm_m1=${year_m1}12
	674	elif [ ${month_m1} -le 9 ]; then
	675	month_m1=0${month_m1}
	676	yyyymm_m1=${year}${month_m1}
	677	else
	678	yyyymm_m1=${year}${month_m1}
	679	fi
	680	# Compute month_p1 (month plus 1M)
	681	# Compute yyyymm_p1 (yyyymm plus 1M)
[829]	682	month_p1=$(( 10#${month} + 1 ))
[544]	683	if [ ${month_p1} = 13 ]; then
	684	month_p1=01
	685	yyyymm_p1=${year_p1}01
	686	elif [ ${month_p1} -le 9 ]; then
	687	month_p1=0${month_p1}
	688	yyyymm_p1=${year}${month_p1}
	689	else
	690	yyyymm_p1=${year}${month_p1}
	691	fi
	692	#IGCM_debug_Print 1 "jg 1 month_m1 = ${month_m1} month_p1 = ${month_p1} "
	693	#IGCM_debug_Print 1 "jg 1 calculate yyyymm_m1 = ${yyyymm_m1} "
	694	#IGCM_debug_Print 1 "jg 1 calculate yyyymm_p1 = ${yyyymm_p1} "
[522]	695
[799]	696	#===================================================================#
	697	# Calculate CyclicYear to be used for looping over a given forcing #
	698	# period. Add CyclicBegin and CyclicEnd in config.card UserChoices. #
	699	#===================================================================#
	700
	701	# To use the variable CyclicYear, one must add in config.card CyclicBegin and CyclicEnd.
	702	# CyclicBegin is the first year in the cycle. CyclicEnd is the last year included in the cycle.
	703	if ( [ ! X${config_UserChoices_CyclicBegin} = X ] && [ ! X${config_UserChoices_CyclicEnd} = X ] ) ; then
	704	CycleNb=$(( ${config_UserChoices_CyclicEnd} - ${config_UserChoices_CyclicBegin} + 1 ))
[819]	705	CyclicYear_p1=NOTDEFINED
	706
	707	# For current year
	708	yeartmp=$year
	709	diffy=$(( $yeartmp - ${config_UserChoices_CyclicBegin} ))
	710	while [ $diffy -lt 0 ] ; do
	711	yeartmp=$(( ${yeartmp} + ${CycleNb} ))
	712	diffy=$(( $yeartmp - ${config_UserChoices_CyclicBegin} ))
	713	done
	714	CyclicYear=$(( ( ${diffy} % ${CycleNb} ) + ${config_UserChoices_CyclicBegin} ))
	715
	716	# For next coming year
	717	yeartmp=$(( $year + 1 ))
	718	diffy=$(( $yeartmp - ${config_UserChoices_CyclicBegin} ))
	719	while [ $diffy -lt 0 ] ; do
	720	yeartmp=$(( ${yeartmp} + ${CycleNb} ))
	721	diffy=$(( $yeartmp - ${config_UserChoices_CyclicBegin} ))
	722	done
	723	CyclicYear_p1=$(( ( ${diffy} % ${CycleNb} ) + ${config_UserChoices_CyclicBegin} ))
	724
[812]	725	IGCM_debug_Print 1 "CyclicYear = ${CyclicYear}, CyclicYear_p1 = ${CyclicYear_p1}, current year=$year"
[799]	726	else
	727	CyclicYear="ERROR_CyclicYear_Variable_Not_Defined"
[812]	728	CyclicYear_p1="ERROR_CyclicYear_p1_Variable_Not_Defined"
[819]	729	IGCM_debug_Print 1 "CyclicYear wont be use without adding CyclicBegin and CyclicEnd in config.card"
[799]	730	fi
	731
[544]	732	# END: SHOULD GO IN A FUNCTION FROM libIGCM_date.ksh
[522]	733
[544]	734	#===================================================================#
	735	# Prepare variables available for ${COMP}.card and ${COMP}.driver #
[786]	736	# But available to any son functions #
[544]	737	#===================================================================#
[2]	738
[544]	739	# Period Length In Days between DateBegin and DateCurrent (at end of period == PeriodDateEnd !)
	740	(( SimulationLengthInDays = $( IGCM_date_DaysBetweenGregorianDate ${PeriodDateEnd} ${DateBegin} ) + 1 ))
[2]	741
[544]	742	# Debug Print :
[731]	743	echo
[544]	744	IGCM_debug_Print 1 "IGCM_config_PeriodStart : Before Execution"
	745	IGCM_debug_Print 1 "Year of simulation : ${year}"
	746	IGCM_debug_Print 1 "Month of simulation : ${month}"
	747	IGCM_debug_Print 1 "PeriodLengthInDays : ${PeriodLengthInDays}"
	748	IGCM_debug_Print 1 "PeriodDateBegin : ${PeriodDateBegin}"
	749	IGCM_debug_Print 1 "PeriodDateEnd : ${PeriodDateEnd}"
	750	IGCM_debug_Print 1 "SimulationLengthInDays : ${SimulationLengthInDays}"
	751	IGCM_debug_Print 1 "ExperienceLengthInDays : ${ExperienceLengthInDays}"
[2]	752
[544]	753	#================================================================#
	754	# Prepare variables available for comp_finalyze #
	755	#================================================================#
[2]	756
[544]	757	# Period for save files
	758	eval DatesPeriod=${PeriodDateBegin}_${PeriodDateEnd} > /dev/null 2>&1
[2]	759
[544]	760	# Prefix for save files of this period
	761	eval PREFIX=${config_UserChoices_JobName}_${DatesPeriod} > /dev/null 2>&1
[2]	762
[544]	763	# List of files that will be deleted in RUN_DIR after run
	764	[ -f stack ] && FileToBeDeleted[0]="stack"
[2]	765
[544]	766	# Test if the same run as already been saved :
	767	if [ X${JobType} = XRUN ] ; then
	768	if [ ${DRYRUN} -le 0 ] ; then
	769	if ( IGCM_sys_TestFileBuffer ${R_BUF_KSH}/${PREFIX}_${Exe_Output} ) ; then
[619]	770	IGCM_debug_Exit "IGCM_config_PeriodStart" "You are currently RErunning an old job."
	771	IGCM_debug_Print 1 "Because of readonly permissions, you can't RErun a job when saved files"
	772	IGCM_debug_Print 1 " are still in the ARCHIVE directory. You must deleted those files, or "
	773	IGCM_debug_Print 1 " the whole ${R_SAVE} tree. See clean_month.job in ${libIGCM} directory."
	774	IGCM_debug_Print 1 " This exit has been initiated because at least ${R_BUF_KSH}/${PREFIX}_${Exe_Output} exists."
	775	IGCM_debug_Verif_Exit
[544]	776	fi
[2]	777	fi
[544]	778	else
	779	if ( IGCM_sys_TestFileBuffer ${R_BUF_KSH}/${PREFIX}_${Exe_Output} ) ; then
	780	IGCM_debug_Print 1 "IGCM_config_PeriodStart" "RErun an old job. Allowed in DEBUG or DEV mode."
	781	fi
	782	fi
[128]	783
[616]	784	typeset ExeNameIn ExeNameFirst CompNameFirst
	785	typeset comp i
	786	typeset tempvar tempvarMPI tempvarNOD NbElts j NbExec
	787
	788	(( PROCESSUS_NUMBER = 0 ))
	789	(( i=0 ))
	790	(( NbExec=0 ))
	791
	792	OK_PARA_MPI=false
	793	OK_PARA_OMP=false
	794	OK_PARA_NOD=false
	795	OK_PARA_MPMD=false
	796
	797	for comp in ${config_ListOfComponents[*]} ; do
	798
	799	IGCM_debug_Print 1 ${comp}
	800
	801	eval ExeNameIn=\${config_Executable_${comp}[0]}
	802
[619]	803	# NO order in config.card for parallelized values !
[616]	804	# just use suffix : MPI , OMP and NOD (for number of NODes.)
	805
	806	# NOD is the number of NODes allocated
	807	eval ${comp}_PROC_NOD=0
	808
	809	# MPI is the number of MPI processus per nodes
	810	eval ${comp}_PROC_MPI=0
	811
	812	# OMP is the number of OpenMP threads per MPI processus
	813	eval ${comp}_PROC_OMP=0
[619]	814
[616]	815	# Only if we really have an executable for the component :
[662]	816	### if [ X${ExeNameIn} != X\"\" ] ; then
	817	if ( [ "X${ExeNameIn}" != X\"\" ] && [ "X${ExeNameIn}" != "Xinca.dat" ] ) ; then
[616]	818
	819	# Keep the first executable found and the first CompName
	820	ExeNameFirst=${ExeNameIn}
	821	CompNameFirst=${comp}
	822
	823	# Are we a second executable?
	824	(( NbExec = NbExec + 1 ))
	825
	826	# set 1 MPI task, 1 OpenMP thread and 1 node as default
	827	eval ${comp}_PROC_MPI=1
	828	eval ${comp}_PROC_OMP=1
	829	eval ${comp}_PROC_NOD=1
	830
	831	eval NbElts=\${#config_Executable_${comp}[@]}
	832
	833	if [ ${NbElts} -ge 2 ] ; then
	834	(( j = 2 ))
	835
[619]	836	while [ $j -lt ${NbElts} ] ; do
[616]	837	eval tempvar=\${config_Executable_${comp}[${j}]}
	838
	839	if [ X${tempvar} = X ] ; then
[619]	840	echo "Error reading MPI/OMP parameters !!!"
	841	echo "Check your config.card."
[616]	842	exit 1
	843	fi
	844
	845	eval IGCM_debug_Print 2 ${tempvar}
	846
	847	case ${tempvar} in
[619]	848	[mM][pP][iI])
[616]	849	# Read MPI parameter for composante
[619]	850	eval ${comp}_PROC_MPI=$( echo ${tempvar} \| tr '[a-z]' '[A-Z]' \| sed -e "s/MPI//" )
	851	OK_PARA_MPI=true;;
	852	[oO][mM][pP])
[616]	853	# Read OMP parameter for composante
[619]	854	eval ${comp}_PROC_OMP=$( echo ${tempvar} \| tr '[a-z]' '[A-Z]' \| sed -e "s/OMP//" )
	855	OK_PARA_OMP=true;;
	856	[nN][oO][dD])
[616]	857	# Read NOD (NumBer of Nodes) parameter for composante
[619]	858	eval ${comp}_PROC_NOD=$( echo ${tempvar} \| tr '[a-z]' '[A-Z]' \| sed -e "s/NOD//" )
	859	OK_PARA_NOD=true
	860	OK_PARA_MPI=true;;
[616]	861	esac
	862
	863	(( j = j + 1 ))
	864	done
	865
	866	fi
	867
	868	eval tempvarMPI=\${${comp}_PROC_MPI}
	869	eval tempvarNOD=\${${comp}_PROC_NOD}
	870	eval tempvarOMP=\${${comp}_PROC_OMP}
	871
	872	(( PROCESSUS_NUMBER = PROCESSUS_NUMBER + tempvarMPI * tempvarNOD * tempvarOMP ))
	873
	874	fi
	875
	876	(( i=i+1 ))
	877	done
	878
	879	# set MPMD mode if more than 2 executable names.
	880	[ ${NbExec} -ge 2 ] && OK_PARA_MPMD=true
	881
	882	# Verification of BATCH_NUM_PROC_TOT total number of processors set in job header.
	883	if [ X${BATCH_NUM_PROC_TOT} != X ] ; then
	884	# BATCH_NUM_PROC_TOT is set
	885	if ( ${OK_PARA_MPI} ) ; then
	886	IGCM_debug_Print 1 "MPI/OMP/NOD found into config.card and BATCH_NUM_PROC_TOT = ${BATCH_NUM_PROC_TOT} "
	887	else
	888	# with previous method.
	889	if [ ${BATCH_NUM_PROC_TOT} -gt 1 ] ; then
	890	# with more than 1 proc
	891	if ( ${OK_PARA_MPMD} ) ; then
	892	# with MPMD ie CPL/oasis method
	893	echo "We will use default number of MPI tasks for this machine : "
	894	echo "${DEFAULT_NUM_PROC_OCE} for OCE; "
	895	echo "${DEFAULT_NUM_PROC_CPL} for CPL; "
	896	echo "${DEFAULT_NUM_PROC_ATM} for ATM; "
	897	echo "${DEFAULT_NUM_PROC_TOTAL} for the total number of processors; "
	898	OK_PARA_MPI=true
	899	CPL_PROC_MPI=${DEFAULT_NUM_PROC_CPL}
	900	OCE_PROC_MPI=${DEFAULT_NUM_PROC_OCE}
	901	ATM_PROC_MPI=${DEFAULT_NUM_PROC_ATM}
	902	PROCESSUS_NUMBER=${DEFAULT_NUM_PROC_TOTAL}
	903	else
	904	# with have only one executable
[682]	905	echo "We will use ${BATCH_NUM_PROC_TOT} MPI tasks for ${CompNameFirst} : ${ExeNameFirst} "
[616]	906	OK_PARA_MPI=true
	907	eval ${CompNameFirst}_PROC_MPI=${BATCH_NUM_PROC_TOT}
	908	PROCESSUS_NUMBER=${BATCH_NUM_PROC_TOT}
	909	fi
[619]	910	else
[616]	911	PROCESSUS_NUMBER=1
	912	fi
	913	fi
	914	# Verification with PBS parameter
	915	if [ ${BATCH_NUM_PROC_TOT} -ne ${PROCESSUS_NUMBER} ] ; then
	916	echo "Warning with parallelization parameters !"
	917	echo "Job header variable BATCH_NUM_PROC_TOT = ${BATCH_NUM_PROC_TOT} "
	918	echo "is the total number of _processors_ reserved."
	919	echo "It is not equal to the sum of _processus_ = ${PROCESSUS_NUMBER}."
	920	echo "We stop now."
	921	exit 1
	922	fi
[638]	923	NUM_PROC_CPL=${CPL_PROC_MPI} # for backward compatibility
	924	NUM_PROC_OCE=${OCE_PROC_MPI} # for backward compatibility
	925	NUM_PROC_ATM=${ATM_PROC_MPI} # for backward compatibility
[616]	926	else # BATCH_NUM_PROC_TOT=""
	927	if ( ${OK_PARA_MPI} ) ; then
	928	echo "You have not given a value of ${BATCH_NUM_PROC_TOT} processors,"
	929	echo "but you have filled the parallel parameter in config->Executable->list."
	930	echo "Please add BATCH_NUM_PROC_TOT variable in job header."
	931	echo "We stop now."
	932	exit 1
	933	else
	934	# sequential case !
	935	if [ ${PROCESSUS_NUMBER} -eq 0 ] ; then
	936	(( PROCESSUS_NUMBER = 1 ))
	937	echo "PROCESSUS_NUMBER is all 0 (sequential use of old definition in config->Executable->list)."
	938	echo "We set it to 1."
	939	fi
	940	fi
	941	fi
	942
	943	IGCM_debug_Print 1 "MPI/OMP treatment PROCESSUS_NUMBER = ${PROCESSUS_NUMBER}"
	944
	945	IGCM_sys_build_execution_scripts
	946
[544]	947	ExecutionFail=false
[473]	948
[544]	949	IGCM_debug_PopStack "IGCM_config_PeriodStart"
[2]	950	}
	951
	952	#===================================
[523]	953	function IGCM_config_SaveSourceModifications
	954	{
[544]	955	IGCM_debug_PushStack "IGCM_config_SaveSourceModifications"
[523]	956
[544]	957	typeset ExeOutDateMax listVarEnv
	958	ExeOutDateMax=$1
[523]	959
[544]	960	listVarEnv="ExeOutDateMax,R_OUT_EXE,PREFIX,SUBMIT_DIR"
	961	IGCM_sys_RshMaster "\
[545]	962	. ${libIGCM}/libIGCM_sys/libIGCM_sys.ksh; \
[544]	963	export ExeOutDateMax=${ExeOutDateMax};\
[545]	964	export R_OUT_EXE=${R_OUT_EXE};\
	965	export PREFIX=${PREFIX};\
	966	export SUBMIT_DIR=${SUBMIT_DIR};\
	967	export listVarEnv=${listVarEnv};\
	968	Script_Output=out_SaveSourceModifications;\
	969	IGCM_sys_Qsub ${libIGCM}/SaveSourceModifications.job ${ExeOutDateMax} ${R_OUT_EXE} ${PREFIX} ${SUBMIT_DIR}"
[523]	970
[544]	971	IGCM_debug_PopStack "IGCM_config_SaveSourceModifications"
[523]	972	}
	973
	974	#===================================
[2]	975	function IGCM_config_PeriodEnd
	976	{
[544]	977	IGCM_debug_PushStack "IGCM_config_PeriodEnd"
[2]	978
[544]	979	echo
	980	IGCM_debug_Print 1 "IGCM_config_PeriodEnd"
	981	echo
[2]	982
[544]	983	#==================================#
	984	# Save Job output #
	985	#==================================#
[634]	986	if [ X${Pack} = Xtrue ] ; then
	987	IGCM_sys_PutBuffer_Out ${Exe_Output} ${R_BUF_KSH}/${PREFIX}_${Exe_Output}
	988	else
	989	IGCM_sys_Put_Out ${Exe_Output} ${R_OUT_KSH}/${PREFIX}_${Exe_Output}
	990	fi
[544]	991	eval FileToBeDeleted[${#FileToBeDeleted[@]}]="${Exe_Output}"
[471]	992
[622]	993	if [ ${DRYRUN} -le 1 ] ; then
[457]	994
[622]	995	IGCM_debug_Print 1 "Check components binary : size and creation date"
[2]	996
[622]	997	typeset LS_comp LS_bin ExeDate ExeCpuLog NextExeSize LastCompExeSize
	998	typeset comp i
	999	typeset ExeNameIn ExeNameOut UpdateExe ExeSecDateMax
[2]	1000
[622]	1001	#==================================#
	1002	# Get last Exe Size #
	1003	#==================================#
[2]	1004
[622]	1005	(( i=0 ))
	1006	if ( ${FirstInitialize} ) ; then
	1007	run_Log_LastExeSize=""
	1008	for comp in ${config_ListOfComponents[*]} ; do
	1009	run_Log_LastExeSize[$i]=0
	1010	(( i=i+1 ))
	1011	done
	1012	else
	1013	IGCM_card_DefineArrayFromOption ${SUBMIT_DIR}/run.card Log LastExeSize
	1014	fi
	1015	#==================================#
	1016	# And Build ExeDate #
	1017	#==================================#
[2]	1018
[622]	1019	# ExeDate = ATM_Jun_12_09:34-SRF_Jun_12_09:34-OCE_Jun_12_09:34-ICE_Jun_12_09:34-CPL_Jun_12_09:33
	1020	# Would be nice to have next line but no way to format ls output (need to ls -l --time-style "+%Y-%m-%dT%H:%M")
	1021	# ExeDate = ATM_2009-06-12T09:34+SRF_2009-06-12T09:34+OCE_2009-06-12T09:34+ICE_2009-06-12T09:34+CPL_2009-06-12T09:34
	1022	ExeDate=""
	1023	NextExeSize="( "
	1024	(( i=0 ))
	1025	UpdateExe=false
	1026	(( ExeSecDateMax = 0 ))
	1027	for comp in ${config_ListOfComponents[*]} ; do
[2]	1028
[622]	1029	IGCM_debug_Print 3 ${comp}
[2]	1030
[622]	1031	eval ExeNameIn=\${config_Executable_${comp}[0]}
	1032	eval ExeNameOut=\${config_Executable_${comp}[1]}
	1033	# Only if we really have an executable for the component :
	1034	if [ X${ExeNameIn} = X\"\" ] ; then
	1035	# If there is no exe file for this component
	1036	(( ExeSize=0 ))
[619]	1037	else
[622]	1038	eval LS_bin=${R_EXE}/${ExeNameIn}
	1039	IGCM_sys_FileSize ${LS_bin} ExeSize
	1040
	1041	set +A LS_comp -- $( LC_TIME=en_US ls -l ${LS_bin} )
	1042	if [ X${ExeDate} = X ] ; then
	1043	# First component exe date
	1044	ExeDate=${comp}_${LS_comp[5]}_${LS_comp[6]}
	1045	else
	1046	ExeDate=${ExeDate}-${comp}_${LS_comp[5]}_${LS_comp[6]}
	1047	fi
	1048	ExeDate=${ExeDate}_${LS_comp[7]}
[619]	1049	fi
[2]	1050
[622]	1051	if [ ${i} -eq 0 ] ; then
	1052	# First component
	1053	NextExeSize="( "${ExeSize}
[619]	1054	else
[622]	1055	NextExeSize=${NextExeSize}", "${ExeSize}
[619]	1056	fi
[622]	1057	eval LastCompExeSize=${run_Log_LastExeSize[$i]}
	1058	(( i=i+1 ))
[523]	1059
[622]	1060	if [ ${ExeSize} -ne ${LastCompExeSize} ] ; then
	1061	if ( ${FirstInitialize} ) ; then
	1062	IGCM_debug_Print 1 "Save first ${ExeNameIn} in ${R_OUT_EXE} !"
	1063	else
	1064	IGCM_debug_Print 1 "${ExeNameIn} has changed in ${R_EXE} !"
	1065	IGCM_debug_Print 1 "Save latest ${ExeNameIn} in ${R_OUT_EXE} !"
	1066	eval FileToBeDeleted[${#FileToBeDeleted[@]}]=${ExeNameOut}
	1067	fi
	1068	eval IGCM_sys_Put_Out ${ExeNameOut} ${R_OUT_EXE}/${PREFIX}_${ExeNameIn} rw
	1069	UpdateExe=true
	1070
[691]	1071	# SD : switch off for now
	1072	#IGCM_sys_GetDate_FichWork ${LS_bin} ExeSecDate
	1073	#if [ $ExeSecDateMax -lt $ExeSecDate ] ; then
	1074	# ExeSecDateMax=$ExeSecDate
	1075	#fi
[619]	1076	fi
[622]	1077	done
[2]	1078
[622]	1079	# SD : switch off for now
	1080	#if ( ${UpdateExe} ) ; then
	1081	# echo "Launch SaveSourceModifications."
	1082	# IGCM_config_SaveSourceModifications ${ExeSecDateMax}
	1083	#fi
[523]	1084
[622]	1085	NextExeSize=${NextExeSize}" )"
	1086	IGCM_card_WriteOption ${SUBMIT_DIR}/run.card Log LastExeSize "${NextExeSize}"
[457]	1087
[622]	1088	if [ ${DRYRUN} -le 1 ] ; then
	1089	tail -1500 ${Exe_Output} > ${Exe_Output}_tail.txt
	1090	ExeCpuLog=$( gawk -f ${libIGCM}/libIGCM_sys/IGCM_add_out.awk ${Exe_Output}_tail.txt )
	1091	RET=$?
	1092	if [ $RET -eq 0 ] ; then
	1093	# ExeCpuLog variable contents 5 fields
	1094	echo "${CumulPeriod} ${PeriodDateBegin} ${PeriodDateEnd} ${ExeCpuLog} ${ExeDate}" \| \
	1095	gawk '{printf("# %11d \| %15s \| %15s \| %19s \| %19s \| %15.5f \| %15.5f \| %15.5f \| %s\n", \
[544]	1096	$1,$2,$3,$4,$5,$6,$7,$8,$9)}' >> ${SUBMIT_DIR}/run.card
[622]	1097	fi
	1098	eval FileToBeDeleted[${#FileToBeDeleted[@]}]="${Exe_Output}_tail.txt"
[619]	1099	fi
[622]	1100
[619]	1101	fi
[2]	1102
[622]	1103	# All was right ? no ? then we stop.
[619]	1104	IGCM_debug_Verif_Exit
[2]	1105
[622]	1106	# If all was OK, we can delete all files not necessary for next Job
[619]	1107	echo
	1108	IGCM_debug_Print 1 "Files that will be deleted before next period-run : "
[2]	1109
[619]	1110	if [ ${DRYRUN} -le 2 ] ; then
	1111	for f in ${FileToBeDeleted[@]} ; do [ -f ${f} ] && ls -la $f ; [ -f ${f} ] && rm -f $f ; done
	1112	else
	1113	echo ${FileToBeDeleted[@]}
	1114	fi
[2]	1115
[922]	1116	# Send some accounting element to the user if CumulPeriod=3
	1117	if [ ${CumulPeriod} -eq 3 ] ; then
	1118	echo
	1119	IGCM_debug_Print 1 "Send email containing some accounting information : "
	1120
	1121	RealCpuTime=$( echo ${ExeCpuLog} \| gawk '{print $3}' )
	1122
	1123	consumeHoursPerPeriod=$( echo "scale=6;${RealCpuTime}*${PROCESSUS_NUMBER}/3600" \| bc )
	1124
	1125	consumeHoursPerWholeSimulation=$( echo "scale=6;${consumeHoursPerPeriod}/${PeriodLengthInDays}*${ExperienceLengthInDays}" \| bc )
	1126
	1127	recommendedPeriodNb=$( echo "scale=6;24/${consumeHoursPerPeriod}*${PROCESSUS_NUMBER}" \| bc )
	1128
	1129	IGCM_sys_SendMail Accounting
	1130	fi
	1131
[622]	1132	#=================================================#
	1133	# Modification of libIGCM behaviour #
	1134	#=================================================#
[119]	1135
[622]	1136	# To use this function, one must copy libIGCM.card from ${libIGCM} directory
	1137	# and put it in ${SUBMIT_DIR} directory. After modifications of ${SUBMIT_DIR}/libIGCM.card,
	1138	# variables define inside [UserChanges] will be modified for next Period of libIGCM main loop.
[619]	1139	if [ -f ${SUBMIT_DIR}/libIGCM.card ] ; then
	1140	echo
	1141	echo "########################################################################"
	1142	echo "!!! Modification of libIGCM behaviour !!!"
	1143	echo
[119]	1144
[619]	1145	IGCM_debug_Print 1 "DefineArrayFromOption : libIGCM_UserChanges in libIGCM.card"
	1146	IGCM_card_DefineArrayFromSection ${SUBMIT_DIR}/libIGCM.card UserChanges
	1147	IGCM_debug_Print 2 "libIGCM_UserChanges" ${libIGCM_UserChanges[*]}
[119]	1148
[622]	1149	# Special treatments for libIGCM internals
[619]	1150	for option in ${libIGCM_UserChanges[*]} ; do
	1151	IGCM_card_DefineVariableFromOption ${SUBMIT_DIR}/libIGCM.card UserChanges ${option}
[119]	1152
[619]	1153	echo "We will change : ${option}."
	1154	eval echo "Previous value : " \${${option}}
	1155	eval echo "Change to : " \${libIGCM_UserChanges_${option}}
[119]	1156
[619]	1157	eval ${option}=\${libIGCM_UserChanges_${option}}
[119]	1158
[619]	1159	case ${option} in
	1160	config_UserChoices_DateEnd)
	1161	IGCM_debug_PrintVariables 1 config_UserChoices_DateEnd
	1162	DateEnd=$( IGCM_date_ConvertFormatToGregorian ${config_UserChoices_DateEnd} )
	1163
[622]	1164	# Period Length In Days between DateBegin and DateEnd
[619]	1165	(( ExperienceLengthInDays=$( IGCM_date_DaysBetweenGregorianDate ${DateEnd} ${DateBegin} ) + 1 ))
	1166	if [ ${ExperienceLengthInDays} -lt 0 ] ; then
	1167	IGCM_debug_Print 1 "Problem with dates in libIGCM.card : ${DateEnd} < ${DateBegin} ! You must check that."
	1168	IGCM_debug_Exit "IGCM_PeriodEnd" " Wrong Dates."
	1169	IGCM_debug_Verif_Exit
	1170	fi
	1171	;;
	1172	config_UserChoices_PeriodLength)
	1173	IGCM_debug_Print 1 "Change config_UserChoices_PeriodLength=${config_UserChoices_PeriodLength}"
	1174	;;
	1175	PeriodNb)
	1176	IGCM_debug_Print 1 "Loop in main Job with ${PeriodNb} period(s)"
	1177	;;
	1178	config_Post_RebuildFrequency)
	1179	IGCM_debug_Print 1 "Change config_Post_RebuildFrequency=${config_Post_RebuildFrequency} : IGCM_post_Configure"
	1180	IGCM_post_Configure
	1181	;;
	1182	config_Post_TimeSeriesFrequency)
[653]	1183	IGCM_debug_Print 1 "Change config_Post_TimeSeriesFrequency = ${config_Post_TimeSeriesFrequency} : IGCM_post_Configure"
[619]	1184	IGCM_post_Configure
	1185	;;
	1186	config_Post_SeasonalFrequency)
[653]	1187	IGCM_debug_Print 1 "Change config_Post_SeasonalFrequency = ${config_Post_SeasonalFrequency} : IGCM_post_Configure"
[619]	1188	IGCM_post_Configure
	1189	;;
	1190	esac
	1191	done
[119]	1192
[619]	1193	echo
	1194	echo "########################################################################"
	1195	echo
[544]	1196	fi
[119]	1197
[544]	1198	#=================================================#
	1199	# Determine next computed period #
	1200	#=================================================#
[2]	1201
[544]	1202	PeriodDateBegin=$( IGCM_date_AddDaysToGregorianDate ${PeriodDateEnd} 1 )
	1203	IGCM_date_GetYearMonthDay $PeriodDateBegin year month day
	1204	year_m1=$(( year - 1 ))
	1205	year_p1=$(( year + 1 ))
[890]	1206	IGCM_config_DaysInPeriodLength
[544]	1207	PeriodDateEnd=$( IGCM_date_AddDaysToGregorianDate ${PeriodDateBegin} $(( ${PeriodLengthInDays} - 1 )) )
[2]	1208
[544]	1209	# Debug Print :
	1210	echo
	1211	IGCM_debug_Print 1 "IGCM_config_PeriodEnd : Preparing Next Execution"
	1212	IGCM_debug_Print 1 "PeriodDateBegin : ${PeriodDateBegin}"
	1213	IGCM_debug_Print 1 "PeriodDateEnd : ${PeriodDateEnd}"
	1214	IGCM_debug_Print 1 "PeriodLengthInDays : ${PeriodLengthInDays}"
[2]	1215
[544]	1216	PeriodDateBegin=$( IGCM_date_ConvertFormatToHuman ${PeriodDateBegin} )
	1217	PeriodDateEnd=$( IGCM_date_ConvertFormatToHuman ${PeriodDateEnd} )
[2]	1218
[544]	1219	(( CumulPeriod = CumulPeriod + 1 ))
[2]	1220
[544]	1221	# Debug Print :
	1222	echo
	1223	IGCM_debug_Print 3 "PeriodDateBegin Human : ${PeriodDateBegin}"
	1224	IGCM_debug_Print 3 "PeriodDateEnd Human : ${PeriodDateEnd}"
	1225	IGCM_debug_Print 3 "CumulPeriod : ${CumulPeriod}"
[2]	1226
[544]	1227	#=================================================#
[786]	1228	# Write updated run.card #
[544]	1229	#=================================================#
[2]	1230
[544]	1231	IGCM_card_WriteOption ${SUBMIT_DIR}/run.card Configuration OldPrefix ${OldPrefix}
	1232	IGCM_card_WriteOption ${SUBMIT_DIR}/run.card Configuration PeriodDateBegin ${PeriodDateBegin}
	1233	IGCM_card_WriteOption ${SUBMIT_DIR}/run.card Configuration PeriodDateEnd ${PeriodDateEnd}
	1234	IGCM_card_WriteOption ${SUBMIT_DIR}/run.card Configuration CumulPeriod ${CumulPeriod}
[2]	1235
[544]	1236	if ( ${FirstInitialize} ) ; then
	1237	# It's no more the first time
	1238	FirstInitialize=false
	1239	fi
[446]	1240
[544]	1241	IGCM_debug_PopStack "IGCM_config_PeriodEnd"
[2]	1242	}
	1243
	1244	#===================================
	1245	function IGCM_config_Finalize
	1246	{
[544]	1247	IGCM_debug_PushStack "IGCM_config_Finalize"
[2]	1248
[544]	1249	echo
	1250	IGCM_debug_Print 1 "IGCM_config_Finalize"
	1251	echo
[2]	1252
[873]	1253	if ( $DEBUG_debug ) ; then
	1254	# Inform the rabbitMQ queue
	1255	if [ X${ActivateBigBro} = Xtrue ] ; then
[920]	1256	# RabbitMQ message code
[873]	1257	code=1100
[920]	1258	# RabbitMQ message body
[873]	1259	Body=$( echo "{\"code\":\"${code}\",\"simuid\":\"${simuid}\",\"jobid\":\"${jobid}\",\"status\":\"OK\",\"timestamp\":\"$( date +"%Y-%m-%d-%T" )\"}" )
[920]	1260	# Fill the rabbitMQ queue
	1261	IGCM_debug_sendAMQP
[873]	1262	fi
	1263	fi
	1264
[544]	1265	if [ ${SimulationLengthInDays} -ge ${ExperienceLengthInDays} ] ; then
	1266	#==========================#
	1267	# End of entire simulation #
	1268	#==========================#
[2]	1269
[544]	1270	# Mail notification
	1271	IGCM_sys_SendMail
	1272	#
	1273	IGCM_card_WriteOption ${SUBMIT_DIR}/run.card Configuration PeriodState "Completed"
[920]	1274	#
[544]	1275	IGCM_debug_Print 1 "Normal End of computation."
[873]	1276
[544]	1277	if ( $DEBUG_debug ) ; then
[873]	1278	if [ X${ActivateBigBro} = Xtrue ] ; then
[920]	1279	# RabbitMQ message code
[873]	1280	code=0100
[920]	1281	# RabbitMQ message body
[873]	1282	Body=$( echo "{\"code\":\"${code}\",\"simuid\":\"${simuid}\",\"jobid\":\"${jobid}\",\"status\":\"OK\",\"timestamp\":\"$( date +"%Y-%m-%d-%T" )\"}" )
[920]	1283	# Fill the rabbitMQ queue
	1284	IGCM_debug_sendAMQP
[873]	1285	fi
[544]	1286	echo
	1287	IGCM_debug_Print 1 "Your files on ${R_SAVE} :"
	1288	IGCM_sys_Tree ${R_SAVE}
[2]	1289
[544]	1290	IGCM_debug_Print 1 "Your files on ${R_BUFR} :"
	1291	IGCM_sys_Tree ${R_BUFR}
	1292	fi
	1293	else
	1294	#=================#
	1295	# Submit next job #
	1296	#=================#
[2]	1297
[544]	1298	IGCM_card_WriteOption ${SUBMIT_DIR}/run.card Configuration PeriodState "OnQueue"
[2]	1299
[544]	1300	# Name of next Ksh Script output :
	1301	eval Script_Output="${Script_Output_Prefix}_${config_UserChoices_JobName}.$( printf "%06d" ${CumulPeriod} )"
[2]	1302
[544]	1303	IGCM_debug_Print 1 "Submit next job"
[922]	1304	# SUBMIT NEXT JOB from SUBMIT_DIR and come back in RUN_DIR
	1305	IGCM_sys_Cd ${SUBMIT_DIR}
[544]	1306	# Keep only the 5 latest ${Script_Output_Prefix}_${config_UserChoices_JobName}
	1307	ScriptTot=$( ls ${Script_Output_Prefix}_${config_UserChoices_JobName}.?????? 2>/dev/null \| wc -l )
	1308	[ ${ScriptTot} -gt 5 ] && rm -f $( ls ${Script_Output_Prefix}_${config_UserChoices_JobName}.?????? \| head -$(( ${ScriptTot} - 5 )) )
[861]	1309	# Submit next job and come back
[544]	1310	IGCM_sys_Qsub ${SUBMIT_DIR}/Job_${config_UserChoices_JobName}
[861]	1311	IGCM_sys_Cd -
[544]	1312	fi
[154]	1313
[544]	1314	# Supress Non Deleted Boundary files
[804]	1315	#if [ ${DRYRUN} -le 2 ] ; then
	1316	# IGCM_comp_DelFixeBoundaryFiles
	1317	# ls -la
	1318	#fi
[619]	1319
[804]	1320	# Clean ${RUN_DIR}=${RUN_DIR_PATH}/${config_UserChoices_JobName}.${$}
[544]	1321	# Only for production run (No clean up in DEV or DEB mode)
	1322	# and command sent from .. directory.
	1323	IGCM_sys_Cd ..
[933]	1324	[ X${JobType} = XRUN ] && IGCM_sys_Rm -rf ${RUN_DIR_PATH}
[544]	1325
	1326	IGCM_debug_PopStack "IGCM_config_Finalize"
[2]	1327	}
	1328
	1329	#===================================

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