| 1 | #!/bin/ksh |
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| 2 | |
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| 3 | #************************************************************** |
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| 4 | # Author: Sebastien Denvil, Martial Mancip |
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| 5 | # Contact: Sebastien.Denvil__at__ipsl.jussieu.fr Martial.Mancip__at__ipsl.jussieu.fr |
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| 6 | # $Revision:: $ Revision of last commit |
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| 7 | # $Author:: $ Author of last commit |
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| 8 | # $Date:: $ Date of last commit |
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| 9 | # IPSL (2006) |
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| 10 | # This software is governed by the CeCILL licence see libIGCM/libIGCM_CeCILL.LIC |
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| 11 | # |
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| 12 | #************************************************************** |
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| 13 | |
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| 14 | #=================================== |
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| 15 | function IGCM_config_CommonConfiguration |
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| 16 | { |
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| 17 | IGCM_debug_PushStack "IGCM_config_CommonConfiguration" $@ |
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| 18 | |
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| 19 | # Debug Print : |
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| 20 | [ ${Verbosity} -gt 0 ] && echo |
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| 21 | IGCM_debug_Print 1 "IGCM_config_CommonConfiguration" $@ |
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| 22 | |
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| 23 | # config.card path |
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| 24 | configCardPath=$1 |
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| 25 | |
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| 26 | #================================== |
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| 27 | typeset option auxprint |
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| 28 | |
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| 29 | #================================== |
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| 30 | # Read UserChoices section: |
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| 31 | [ ${Verbosity} -gt 0 ] && echo |
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| 32 | IGCM_debug_Print 1 "DefineArrayFromOption : config_UserChoices" |
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| 33 | |
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| 34 | IGCM_card_DefineArrayFromSection ${configCardPath} UserChoices |
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| 35 | for option in ${config_UserChoices[*]} ; do |
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| 36 | IGCM_card_DefineVariableFromOption ${configCardPath} UserChoices ${option} |
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| 37 | eval auxprint=\${config_UserChoices_${option}} |
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| 38 | IGCM_debug_Print 3 "${option} : ${auxprint}" |
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| 39 | done |
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| 40 | |
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| 41 | # Set variables with shorter names on some variables which |
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| 42 | # are used in the executable name in config.card |
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| 43 | ResolAtm=${config_UserChoices_ResolAtm} |
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| 44 | ResolOce=${config_UserChoices_ResolOce} |
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| 45 | OptMode=${config_UserChoices_OptMode} |
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| 46 | |
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| 47 | #================================== |
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| 48 | # Read Ensemble section: |
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| 49 | [ ${Verbosity} -gt 0 ] && echo |
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| 50 | IGCM_debug_Print 1 "DefineArrayFromOption : config_Ensemble" |
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| 51 | |
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| 52 | IGCM_card_DefineArrayFromSection ${configCardPath} Ensemble |
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| 53 | for option in ${config_Ensemble[*]} ; do |
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| 54 | IGCM_card_DefineVariableFromOption ${configCardPath} Ensemble ${option} |
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| 55 | eval auxprint=\${config_Ensemble_${option}} |
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| 56 | IGCM_debug_Print 3 "${option} : ${auxprint}" |
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| 57 | done |
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| 58 | |
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| 59 | #================================== |
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| 60 | # Read Post section: |
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| 61 | [ ${Verbosity} -gt 0 ] && echo |
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| 62 | IGCM_debug_Print 1 "DefineArrayFromOption : config_Post" |
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| 63 | |
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| 64 | IGCM_card_DefineArrayFromSection ${configCardPath} Post |
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| 65 | for option in ${config_Post[*]} ; do |
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| 66 | IGCM_card_DefineVariableFromOption ${configCardPath} Post ${option} |
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| 67 | eval auxprint=\${config_Post_${option}} |
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| 68 | IGCM_debug_Print 3 "${option} : ${auxprint}" |
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| 69 | done |
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| 70 | [ ${Verbosity} -gt 0 ] && echo |
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| 71 | |
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| 72 | #================================== |
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| 73 | # Define default value to keep compatibility with previous card: means before changes due to TGCC |
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| 74 | # Apply some overrules to ensure proper usage of computing centres resources |
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| 75 | # |
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| 76 | if [ X${PackDefault} = Xtrue ] ; then |
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| 77 | if [ X${config_UserChoices_SpaceName} = XTEST ]; then |
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| 78 | # TEST simulations will not be packed and will stay on SCRATCHDIR filesystem |
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| 79 | IGCM_debug_Print 1 "SpaceName=TEST. OVERRULE PackFrequency to NONE" |
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| 80 | config_Post_PackFrequency=NONE |
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| 81 | else |
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| 82 | # Default to RebuildFrequency if nothing has been set up related to PackFrequency |
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| 83 | [ X${config_Post_PackFrequency} = X ] && config_Post_PackFrequency=${config_Post_RebuildFrequency} |
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| 84 | fi |
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| 85 | else |
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| 86 | # If we DO NOT apply pack in this computing center |
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| 87 | config_Post_PackFrequency=NONE |
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| 88 | fi |
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| 89 | |
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| 90 | #==================================================== |
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| 91 | # Define ARCHIVE : Dedicated to large files |
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| 92 | # Define STORAGE : Dedicated to small/medium files |
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| 93 | # Define R_OUT : Output tree located on ARCHIVE |
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| 94 | # Define R_BUF : Output tree located on STORAGE (files waiting treatment, or file lcoation when SpaceName=!PROD) |
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| 95 | # Define R_FIG : Output tree located on STORAGE hosting figures (monitoring and atlas, and/or small files) |
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| 96 | # Define R_TMP : A temporary space used by IGCM_debug_send_AMQP_msg__MAILTUNNEL. Must be persistent in between jobs |
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| 97 | IGCM_sys_defineArchives |
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| 98 | |
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| 99 | #==================================================== |
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| 100 | # R_SAVE : Job output directory |
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| 101 | # R_BUFR : Job output buffered directory |
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| 102 | # R_CMIP : Job output directory for CMIP6 standard files |
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| 103 | |
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| 104 | if ( [ ! X${config_UserChoices_SpaceName} = X ] && [ ! X${config_UserChoices_ExperimentName} = X ] ) ; then |
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| 105 | FreeName=$( echo ${config_UserChoices_JobName} | sed 's/.*_//' ) |
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| 106 | if ( [ ! X${config_Ensemble_EnsembleName} = X ] && [ ! X${config_Ensemble_EnsembleDate} = X ] ) ; then |
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| 107 | R_SAVE=${R_OUT}/${config_UserChoices_TagName}/${config_UserChoices_SpaceName}/${config_UserChoices_ExperimentName}/${config_Ensemble_EnsembleName}/${config_Ensemble_EnsembleDate}/${FreeName} |
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| 108 | R_FIGR=${R_FIG}/${config_UserChoices_TagName}/${config_UserChoices_SpaceName}/${config_UserChoices_ExperimentName}/${config_Ensemble_EnsembleName}/${config_Ensemble_EnsembleDate}/${FreeName} |
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| 109 | R_BUFR=${R_BUF}/${config_UserChoices_TagName}/${config_UserChoices_SpaceName}/${config_UserChoices_ExperimentName}/${config_Ensemble_EnsembleName}/${config_Ensemble_EnsembleDate}/${FreeName} |
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| 110 | R_DODS=${config_UserChoices_TagName}/${config_UserChoices_SpaceName}/${config_UserChoices_ExperimentName}/${config_Ensemble_EnsembleName}/${config_Ensemble_EnsembleDate}/${FreeName} |
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| 111 | R_CMIP=${CMIP6_BUF}/${config_UserChoices_TagName}/${config_UserChoices_SpaceName}/${config_UserChoices_ExperimentName}/${config_Ensemble_EnsembleName}/${config_Ensemble_EnsembleDate}/${FreeName} |
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| 112 | else |
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| 113 | R_SAVE=${R_OUT}/${config_UserChoices_TagName}/${config_UserChoices_SpaceName}/${config_UserChoices_ExperimentName}/${FreeName} |
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| 114 | R_FIGR=${R_FIG}/${config_UserChoices_TagName}/${config_UserChoices_SpaceName}/${config_UserChoices_ExperimentName}/${FreeName} |
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| 115 | R_BUFR=${R_BUF}/${config_UserChoices_TagName}/${config_UserChoices_SpaceName}/${config_UserChoices_ExperimentName}/${FreeName} |
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| 116 | R_DODS=${config_UserChoices_TagName}/${config_UserChoices_SpaceName}/${config_UserChoices_ExperimentName}/${FreeName} |
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| 117 | R_CMIP=${CMIP6_BUF}/${config_UserChoices_TagName}/${config_UserChoices_SpaceName}/${config_UserChoices_ExperimentName}/${FreeName} |
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| 118 | fi |
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| 119 | else |
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| 120 | if ( [ ! X${config_Ensemble_EnsembleName} = X ] && [ ! X${config_Ensemble_EnsembleDate} = X ] ) ; then |
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| 121 | R_SAVE=${R_OUT}/${config_UserChoices_TagName}/${config_Ensemble_EnsembleName}/${config_Ensemble_EnsembleDate}/${config_UserChoices_JobName} |
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| 122 | R_FIGR=${R_FIG}/${config_UserChoices_TagName}/${config_Ensemble_EnsembleName}/${config_Ensemble_EnsembleDate}/${config_UserChoices_JobName} |
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| 123 | R_BUFR=${R_BUF}/${config_UserChoices_TagName}/${config_Ensemble_EnsembleName}/${config_Ensemble_EnsembleDate}/${config_UserChoices_JobName} |
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| 124 | R_DODS=${config_UserChoices_TagName}/${config_Ensemble_EnsembleName}/${config_Ensemble_EnsembleDate}/${config_UserChoices_JobName} |
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| 125 | else |
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| 126 | R_SAVE=${R_OUT}/${config_UserChoices_TagName}/${config_UserChoices_JobName} |
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| 127 | R_FIGR=${R_FIG}/${config_UserChoices_TagName}/${config_UserChoices_JobName} |
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| 128 | R_BUFR=${R_BUF}/${config_UserChoices_TagName}/${config_UserChoices_JobName} |
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| 129 | R_DODS=${config_UserChoices_TagName}/${config_UserChoices_JobName} |
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| 130 | fi |
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| 131 | fi |
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| 132 | |
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| 133 | #==================================================== |
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| 134 | # Define R_OUT_KSH : Storage place for job output |
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| 135 | # Define R_OUT_EXE : Storage place for binary used during simulation |
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| 136 | R_OUT_KSH=${R_SAVE}/Out |
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| 137 | R_OUT_EXE=${R_SAVE}/Exe |
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| 138 | |
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| 139 | #==================================================== |
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| 140 | # Define R_BUF_KSH : Buffer place for job output |
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| 141 | # Define R_BUF_EXE : Buffer place for binary used during simulation |
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| 142 | R_BUF_KSH=${R_BUFR}/Out |
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| 143 | R_BUF_EXE=${R_BUFR}/Exe |
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| 144 | |
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| 145 | #==================================================== |
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| 146 | # Define REBUILD_DIR : where we store files needing rebuild process |
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| 147 | REBUILD_DIR=${R_BUFR}/REBUILD |
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| 148 | if [ ! X${TaskType} = Xchecking ] ; then |
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| 149 | IGCM_sys_MkdirWork ${REBUILD_DIR} |
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| 150 | fi |
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| 151 | |
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| 152 | #==================================================== |
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| 153 | # DodsCopy : apply default value if not defined |
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| 154 | if ( [ X${config_Post_DodsCopy} = X${NULL_STR} ] || [ X${config_Post_DodsCopy} = X ] ) ; then |
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| 155 | config_Post_DodsCopy=TRUE |
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| 156 | fi |
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| 157 | |
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| 158 | #==================================================== |
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| 159 | # AtlasIPSL : apply default value if not defined |
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| 160 | if ( [ X${config_Post_AtlasIPSL} = X${NULL_STR} ] || [ X${config_Post_AtlasIPSL} = X ] ) ; then |
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| 161 | config_Post_AtlasIPSL=TRUE |
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| 162 | fi |
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| 163 | |
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| 164 | #==================================================== |
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| 165 | # ParserXIOS : apply default value if not defined |
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| 166 | if ( [ X${config_Post_ParserXIOS} = X${NULL_STR} ] || [ X${config_Post_ParserXIOS} = X ] ) ; then |
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| 167 | config_Post_ParserXIOS=FALSE |
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| 168 | fi |
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| 169 | |
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| 170 | #==================================================== |
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| 171 | # MetricsPCMDI : apply default value if not defined |
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| 172 | if ( [ X${config_Post_MetricsPCMDI} = X${NULL_STR} ] || [ X${config_Post_MetricsPCMDI} = X ] ) ; then |
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| 173 | config_Post_MetricsPCMDI=FALSE |
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| 174 | fi |
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| 175 | |
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| 176 | #==================================================== |
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| 177 | # IgnoreNonMonotonic : apply default value if not defined |
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| 178 | if ( [ X${config_Post_IgnoreNonMonotonic} = X${NULL_STR} ] || [ X${config_Post_IgnoreNonMonotonic} = X ] ) ; then |
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| 179 | config_Post_IgnoreNonMonotonic=FALSE |
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| 180 | fi |
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| 181 | |
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| 182 | #==================================================== |
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| 183 | # LightRestartPack : apply default value if not defined |
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| 184 | if ( [ X${config_Post_LightRestartPack} = X${NULL_STR} ] || [ X${config_Post_LightRestartPack} = X ] ) ; then |
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| 185 | config_Post_LightRestartPack=FALSE |
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| 186 | fi |
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| 187 | |
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| 188 | #==================================================== |
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| 189 | # Define StackFileLocation : directory where we store stack files |
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| 190 | # Define StackFileName : stack file containing call tree and instrumentation |
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| 191 | # Stack file containing call tree will be stored there. |
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| 192 | if ( $DEBUG_debug ) ; then |
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| 193 | StackFileLocation=${StackFileLocation:=${R_BUF_KSH}} |
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| 194 | [ ! -d ${StackFileLocation} ] && mkdir -p ${StackFileLocation} |
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| 195 | if [ X${TaskType} = Xcomputing ]; then |
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| 196 | StackFileName=computing.stack.$$ |
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| 197 | elif [ X${TaskType} = Xpost-processing ]; then |
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| 198 | StackFileName=${Script_Post_Output}.stack.$$ |
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| 199 | elif [ X${TaskType} = Xchecking ]; then |
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| 200 | StackFileName=checking.stack.$$ |
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| 201 | else |
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| 202 | IGCM_debug_Exit "IGCM_config_CommonConfiguration unknown TaskType : ${TaskType}" |
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| 203 | IGCM_debug_Verif_Exit |
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| 204 | fi |
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| 205 | |
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| 206 | # This boolean will trigger the filling of the stack |
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| 207 | # Only now we know where things should be ... |
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| 208 | # We don't fill the stack when we perform checking task |
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| 209 | if [ ! X${TaskType} = Xchecking ] ; then |
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| 210 | ActivateStackFilling=true |
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| 211 | fi |
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| 212 | fi |
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| 213 | |
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| 214 | IGCM_debug_PopStack "IGCM_config_CommonConfiguration" |
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| 215 | } |
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| 216 | |
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| 217 | #=================================== |
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| 218 | function IGCM_config_Initialize |
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| 219 | { |
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| 220 | IGCM_debug_PushStack "IGCM_config_Initialize" |
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| 221 | |
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| 222 | # Debug Print : |
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| 223 | echo |
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| 224 | IGCM_debug_Print 1 "IGCM_config_Initialize" |
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| 225 | |
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| 226 | # Test modipsl tree existence. |
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| 227 | IGCM_sys_TestDir ${MODIPSL} |
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| 228 | [ $? != 0 ] && IGCM_debug_Exit "IGCM_sys_TestDir" |
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| 229 | IGCM_sys_TestDir ${libIGCM} |
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| 230 | [ $? != 0 ] && IGCM_debug_Exit "IGCM_sys_TestDir" |
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| 231 | IGCM_sys_TestDir ${R_EXE} |
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| 232 | [ $? != 0 ] && IGCM_debug_Exit "IGCM_sys_TestDir" |
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| 233 | IGCM_sys_TestDir ${SUBMIT_DIR} |
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| 234 | [ $? != 0 ] && IGCM_debug_Exit "IGCM_sys_TestDir" |
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| 235 | |
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| 236 | if ( $DEBUG_debug ) ; then |
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| 237 | echo "Keep trace of inital SUBMIT_DIR : " |
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| 238 | ls -lta ${SUBMIT_DIR} |
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| 239 | fi |
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| 240 | |
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| 241 | #================================== |
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| 242 | # Read ListOfComponents section: |
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| 243 | echo |
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| 244 | IGCM_debug_Print 1 "DefineArrayFromSection : ListOfComponents" |
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| 245 | |
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| 246 | IGCM_card_DefineArrayFromSection ${SUBMIT_DIR}/config.card ListOfComponents |
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| 247 | for comp in ${config_ListOfComponents[*]} ; do |
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| 248 | IGCM_card_DefineArrayFromOption ${SUBMIT_DIR}/config.card ListOfComponents ${comp} |
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| 249 | done |
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| 250 | IGCM_debug_Print 3 ${config_ListOfComponents[*]} |
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| 251 | |
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| 252 | #================================== |
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| 253 | # Read Executable section: |
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| 254 | IGCM_card_DefineArrayFromSection ${SUBMIT_DIR}/config.card Executable |
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| 255 | |
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| 256 | #================================== |
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| 257 | # Read Restarts section: |
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| 258 | # Restarts : Gerneral rule or local for each component. |
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| 259 | echo |
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| 260 | IGCM_debug_Print 1 "DefineArrayFromOption : config_Restarts" |
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| 261 | |
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| 262 | IGCM_card_DefineArrayFromSection ${SUBMIT_DIR}/config.card Restarts |
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| 263 | for option in ${config_Restarts[*]} ; do |
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| 264 | IGCM_card_DefineVariableFromOption ${SUBMIT_DIR}/config.card Restarts ${option} |
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| 265 | eval auxprint=\${config_Restarts_${option}} |
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| 266 | IGCM_debug_Print 3 "${option} : ${auxprint}" |
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| 267 | done |
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| 268 | |
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| 269 | #================================== |
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| 270 | # Define Job Outputs Name |
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| 271 | echo |
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| 272 | IGCM_debug_Print 2 "Define Script_Output_Prefix and Exe_Output" |
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| 273 | Script_Output_Prefix=${config_UserChoices_Script_Output_Prefix:='Script_Output'} |
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| 274 | IGCM_debug_Print 3 "Script_Output_Prefix = ${Script_Output_Prefix}" |
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| 275 | Exe_Output=out_execution |
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| 276 | IGCM_debug_Print 3 "Exe_Output = ${Exe_Output}" |
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| 277 | |
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| 278 | #===================================================================# |
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| 279 | # Prepare variables available for ${COMP}.card and ${COMP}.driver # |
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| 280 | # But available to any son functions # |
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| 281 | #===================================================================# |
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| 282 | |
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| 283 | # Convert yyyy-mm-dd date to gregorian yyyymmdd |
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| 284 | DateBegin=$( IGCM_date_ConvertFormatToGregorian ${config_UserChoices_DateBegin} ) |
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| 285 | DateEnd=$( IGCM_date_ConvertFormatToGregorian ${config_UserChoices_DateEnd} ) |
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| 286 | |
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| 287 | # Period Length In Days between DateBegin and DateEnd |
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| 288 | (( ExperienceLengthInDays=$( IGCM_date_DaysBetweenGregorianDate ${DateEnd} ${DateBegin} ) + 1 )) |
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| 289 | if [ ${ExperienceLengthInDays} -lt 0 ] ; then |
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| 290 | IGCM_debug_Print 1 "Problem with dates in config.card : ${DateEnd} < ${DateBegin} ! You must check that." |
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| 291 | IGCM_debug_Exit "IGCM_config_Initialize" " Wrong Dates." |
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| 292 | IGCM_debug_Verif_Exit |
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| 293 | fi |
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| 294 | |
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| 295 | # Day and Year of Initial State (Given in julian format) |
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| 296 | InitDay=$(( $( IGCM_date_ConvertGregorianDateToJulian $DateBegin ) % 1000 )) |
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| 297 | InitYear=$(( $( IGCM_date_ConvertGregorianDateToJulian $DateBegin ) / 1000 )) |
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| 298 | |
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| 299 | #================================================================# |
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| 300 | # Test and Prepare directories # |
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| 301 | #================================================================# |
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| 302 | |
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| 303 | # ==> 4 kinds of input files : |
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| 304 | # 1) R_INIT : Initial State Files (Etat0, carteveg) |
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| 305 | # 2) R_BC : Boundary Conditions (Forcages, lai) |
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| 306 | # 3) Parameters files (allready define through ${SUBMIT_DIR}) |
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| 307 | # 4) Restarts files (allready define in IGCM_config_Initialize) |
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| 308 | |
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| 309 | # Here we offer the possibility to redefine R_INIT, R_BC |
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| 310 | # and PeriodNb through config.card |
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| 311 | R_INIT=${config_UserChoices_R_INIT:=${R_IN}/INIT} |
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| 312 | echo |
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| 313 | IGCM_debug_Print 2 "(Re)Define R_INIT, R_BC and PeriodNb" |
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| 314 | IGCM_debug_Print 3 "R_IN=${R_IN}" |
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| 315 | IGCM_debug_Print 3 "R_INIT=${R_INIT}" |
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| 316 | R_BC=${config_UserChoices_R_BC:=${R_IN}/BC} |
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| 317 | IGCM_debug_Print 3 "R_BC=${R_BC}" |
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| 318 | PeriodNb=${config_UserChoices_PeriodNb:=${PeriodNb}} |
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| 319 | IGCM_debug_Print 3 "Loop in main Job with ${PeriodNb} period(s)" |
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| 320 | |
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| 321 | # SD ADA SPECIFIC # |
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| 322 | # TO FIX # |
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| 323 | #IGCM_sys_TestDirArchive ${R_IN} |
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| 324 | #[ $? != 0 ] && IGCM_debug_Exit "IGCM_sys_TestDirArchive" |
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| 325 | |
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| 326 | if ( ${FirstInitialize} ) ; then |
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| 327 | IGCM_sys_MkdirArchive ${R_SAVE} |
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| 328 | [ ! ${config_Post_PackFrequency} = NONE ] && IGCM_sys_Mkdir ${R_BUFR} |
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| 329 | else |
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| 330 | IGCM_sys_TestDirArchive ${R_SAVE} |
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| 331 | [ $? != 0 ] && IGCM_debug_Exit "IGCM_sys_TestDirArchive ${R_SAVE}" |
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| 332 | |
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| 333 | if [ ! ${config_Post_PackFrequency} = NONE ] ; then |
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| 334 | IGCM_sys_TestDir ${R_BUFR} |
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| 335 | [ $? != 0 ] && IGCM_debug_Exit "IGCM_sys_TestDir ${R_BUFR}" |
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| 336 | fi |
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| 337 | |
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| 338 | # Test state of run in run.card. Will schedule an exit if another process setted it to "Fatal" |
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| 339 | IGCM_config_StateCheck |
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| 340 | |
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| 341 | # And EXIT if not OK |
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| 342 | IGCM_debug_Verif_Exit |
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| 343 | fi |
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| 344 | |
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| 345 | #==================================================== |
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| 346 | # Experience type : DEB(ug), DEV(elopment), RUN |
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| 347 | if [ X${JobType} != XRUN ] ; then |
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| 348 | echo |
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| 349 | echo "====================================================" |
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| 350 | echo "libIGCM JOB is NOT in RUN type mode." |
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| 351 | echo "!! OUTPUT files will NOT be PROTECTED !!" |
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| 352 | echo "Be carefull : you can ERASE the result of this job !" |
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| 353 | |
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| 354 | case ${JobType} in |
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| 355 | DEB) |
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| 356 | echo "DEBUG mode : activation of 'set -vx' mode." |
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| 357 | echo "DEBUG mode : no protection for output files." |
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| 358 | echo "DEBUG mode : if active force asynchronous rebuild frequency to PeriodLength frequency." |
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| 359 | ;; |
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| 360 | DEV) |
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| 361 | echo "DEVelopment mode : no protection for output files." |
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| 362 | echo "DEVelopment mode : if active force asynchronous rebuild frequency to PeriodLength frequency." |
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| 363 | ;; |
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| 364 | esac |
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| 365 | |
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| 366 | if ( [ X${config_Post_RebuildFrequency} != XNONE ] && [ ${DRYRUN} -eq 0 ] ) ; then |
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| 367 | if [ X${config_Post_RebuildFrequency} != X${config_UserChoices_PeriodLength} ] ; then |
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| 368 | echo "------------" |
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| 369 | echo "WARNING : Job is NOT in RUN mode then we will force REBUILD Frequency" |
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| 370 | echo " to PeriodLength : ${config_UserChoices_PeriodLength}" |
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| 371 | echo "------------" |
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| 372 | config_Post_RebuildFrequency=${config_UserChoices_PeriodLength} |
|---|
| 373 | fi |
|---|
| 374 | fi |
|---|
| 375 | echo "====================================================" |
|---|
| 376 | echo |
|---|
| 377 | fi |
|---|
| 378 | |
|---|
| 379 | IGCM_debug_PopStack "IGCM_config_Initialize" |
|---|
| 380 | } |
|---|
| 381 | |
|---|
| 382 | #=================================== |
|---|
| 383 | function IGCM_config_DaysInPeriodLength |
|---|
| 384 | { |
|---|
| 385 | IGCM_debug_PushStack "IGCM_config_DaysInPeriodLength" |
|---|
| 386 | |
|---|
| 387 | typeset i |
|---|
| 388 | |
|---|
| 389 | # Determine number of day(s) in PeriodLength : |
|---|
| 390 | case ${config_UserChoices_PeriodLength} in |
|---|
| 391 | *Y|*y) |
|---|
| 392 | PeriodLengthInYears=$( echo ${config_UserChoices_PeriodLength} | sed -e 's/[yY]//' ) |
|---|
| 393 | echo |
|---|
| 394 | IGCM_debug_Print 2 "Number of years for PeriodLength : ${PeriodLengthInYears}" |
|---|
| 395 | PeriodLengthInDays=0 |
|---|
| 396 | i=0 |
|---|
| 397 | until [ $i -ge $PeriodLengthInYears ] ; do |
|---|
| 398 | (( PeriodLengthInDays = PeriodLengthInDays + $( IGCM_date_DaysInYear $(( year + i )) ) )) |
|---|
| 399 | (( i=i+1 )) |
|---|
| 400 | done |
|---|
| 401 | ;; |
|---|
| 402 | *M|*m) |
|---|
| 403 | PeriodLengthInMonths=$( echo ${config_UserChoices_PeriodLength} | sed -e 's/[mM]//' ) |
|---|
| 404 | echo |
|---|
| 405 | IGCM_debug_Print 2 "Number of months for PeriodLength : ${PeriodLengthInMonths}" |
|---|
| 406 | PeriodLengthInDays=0 |
|---|
| 407 | i=0 |
|---|
| 408 | until [ $i -ge $PeriodLengthInMonths ] ; do |
|---|
| 409 | if [ $(( 10#${month} + ${i} )) -lt 13 ] ; then |
|---|
| 410 | (( PeriodLengthInDays = PeriodLengthInDays + $( IGCM_date_DaysInMonth $year $(( 10#${month} + ${i} )) ) )) |
|---|
| 411 | else |
|---|
| 412 | (( PeriodLengthInDays = PeriodLengthInDays + $( IGCM_date_DaysInMonth $year $(( 10#${month} + ${i} - 12 )) ) )) |
|---|
| 413 | fi |
|---|
| 414 | (( i=i+1 )) |
|---|
| 415 | done |
|---|
| 416 | ;; |
|---|
| 417 | *D|*d) |
|---|
| 418 | PeriodLengthInMonths=0 |
|---|
| 419 | PeriodLengthInDays=$( echo ${config_UserChoices_PeriodLength} | sed -e 's/[dD]//' ) |
|---|
| 420 | echo |
|---|
| 421 | IGCM_debug_Print 2 "Number of days for PeriodLength : ${PeriodLengthInDays}";; |
|---|
| 422 | *) |
|---|
| 423 | IGCM_debug_Exit "IGCM_config_DaysInPeriodLength " ${config_UserChoices_PeriodLength} " invalid period length : choose in *Y, *M, *D." |
|---|
| 424 | IGCM_debug_Verif_Exit ;; |
|---|
| 425 | esac |
|---|
| 426 | |
|---|
| 427 | IGCM_debug_PopStack "IGCM_config_DaysInPeriodLength" |
|---|
| 428 | } |
|---|
| 429 | |
|---|
| 430 | #=================================== |
|---|
| 431 | function IGCM_config_DateCoherency |
|---|
| 432 | { |
|---|
| 433 | IGCM_debug_PushStack "IGCM_config_DateCoherency" |
|---|
| 434 | |
|---|
| 435 | echo |
|---|
| 436 | IGCM_debug_Print 1 "IGCM_config_DateCoherency" |
|---|
| 437 | echo |
|---|
| 438 | |
|---|
| 439 | typeset Length VerifiedPeriodDateBegin VerifiedPeriodDateEnd |
|---|
| 440 | |
|---|
| 441 | # check coherency between (PeriodDateBegin, PeriodDateEnd) and (DateBegin, CumulPeriod, PeriodLength) |
|---|
| 442 | # DateBegin + CumulPeriod*PeriodLength = PeriodDateBegin |
|---|
| 443 | echo |
|---|
| 444 | |
|---|
| 445 | case ${config_UserChoices_PeriodLength} in |
|---|
| 446 | *Y|*y) |
|---|
| 447 | Length=$( IGCM_date_DaysInCurrentPeriod ${DateBegin} $(( ${CumulPeriod} * ${PeriodLengthInYears} ))Y ) |
|---|
| 448 | ;; |
|---|
| 449 | *M|*m) |
|---|
| 450 | Length=$( IGCM_date_DaysInCurrentPeriod ${DateBegin} $(( ${CumulPeriod} * ${PeriodLengthInMonths} ))M ) |
|---|
| 451 | ;; |
|---|
| 452 | *D|*d) |
|---|
| 453 | Length=$( IGCM_date_DaysInCurrentPeriod ${DateBegin} $(( ${CumulPeriod} * ${PeriodLengthInDays} ))D ) |
|---|
| 454 | ;; |
|---|
| 455 | esac |
|---|
| 456 | VerifiedPeriodDateEnd=$( IGCM_date_AddDaysToGregorianDate ${DateBegin} ${Length}-1 ) |
|---|
| 457 | |
|---|
| 458 | if [ ${VerifiedPeriodDateEnd} != ${PeriodDateEnd} ] ; then |
|---|
| 459 | IGCM_debug_Print 1 "From run.card PeriodDateEnd is not consistent with DateBegin and CumulPeriod." |
|---|
| 460 | IGCM_debug_Print 1 "We have DateBegin = ${DateBegin}" |
|---|
| 461 | IGCM_debug_Print 1 "We have CumulPeriod = ${CumulPeriod}" |
|---|
| 462 | IGCM_debug_Print 1 "We have PeriodDateEnd = ${PeriodDateEnd}" |
|---|
| 463 | IGCM_debug_Print 1 "We have VerifiedPeriodDateEnd = ${VerifiedPeriodDateEnd}" |
|---|
| 464 | IGCM_debug_Print 1 "You must have change run.card in an inconsistent way." |
|---|
| 465 | |
|---|
| 466 | IGCM_debug_Exit "STOP here to avoid further issues." |
|---|
| 467 | fi |
|---|
| 468 | |
|---|
| 469 | # PeriodDateBegin + PeriodLength = PeriodDateEnd |
|---|
| 470 | VerifiedPeriodDateBegin=$( IGCM_date_AddDaysToGregorianDate ${VerifiedPeriodDateEnd} $(( ${PeriodLengthInDays} * -1 )) ) |
|---|
| 471 | |
|---|
| 472 | IGCM_debug_PopStack "IGCM_config_DateCoherency" |
|---|
| 473 | } |
|---|
| 474 | |
|---|
| 475 | #=================================== |
|---|
| 476 | function IGCM_config_StateCheck |
|---|
| 477 | { |
|---|
| 478 | IGCM_debug_PushStack "IGCM_config_StateCheck" |
|---|
| 479 | |
|---|
| 480 | #Test state of run in run.card |
|---|
| 481 | IGCM_card_DefineVariableFromOption ${SUBMIT_DIR}/run.card Configuration PeriodState |
|---|
| 482 | |
|---|
| 483 | if [ ${run_Configuration_PeriodState} = "Fatal" ] ; then |
|---|
| 484 | echo |
|---|
| 485 | IGCM_debug_Print 1 "!! Error in run.card with PeriodState : " ${run_Configuration_PeriodState} "!!" |
|---|
| 486 | IGCM_debug_Print 1 "Check the overall status of your simulation by visiting this page:" |
|---|
| 487 | IGCM_debug_Print 1 "http://prodiguer-test-web.ipsl.fr/static/simulation.detail.html?uid=${simuid}" |
|---|
| 488 | IGCM_debug_Print 1 "Then try running ${libIGCM}/clean_PeriodLenght.job to clean latest failed period" |
|---|
| 489 | IGCM_debug_Print 1 "Or try running ${libIGCM}/clean_latestPackperiod.job to clean lastest pack period." |
|---|
| 490 | IGCM_debug_Print 1 "Or use ${libIGCM}/purge_simulation.job to delete the full simulation." |
|---|
| 491 | IGCM_debug_Exit |
|---|
| 492 | elif [ $( echo ${run_Configuration_PeriodState} | grep Fatal | wc -l ) -eq 1 ] ; then |
|---|
| 493 | echo |
|---|
| 494 | IGCM_debug_Print 1 "!! Error in run.card with PeriodState : " ${run_Configuration_PeriodState} "!!" |
|---|
| 495 | IGCM_debug_Print 1 "Compute jobs has been stop because at least the above mentionned post-processing jobs fails." |
|---|
| 496 | IGCM_debug_Print 1 "Check post-processing jobs carefully by visiting this page:" |
|---|
| 497 | IGCM_debug_Print 1 "http://prodiguer-test-web.ipsl.fr/static/simulation.detail.html?uid=${simuid}" |
|---|
| 498 | IGCM_debug_Print 1 "Please visit that page to see how to fix issues:" |
|---|
| 499 | IGCM_debug_Print 1 "https://forge.ipsl.jussieu.fr/igcmg_doc/wiki/DocGmonitor" |
|---|
| 500 | IGCM_debug_Print 1 "Then try running ${libIGCM}/clean_PeriodLenght.job to clean latest failed period" |
|---|
| 501 | IGCM_debug_Print 1 "Or try running ${libIGCM}/clean_latestPackperiod.job to clean latest pack period." |
|---|
| 502 | IGCM_debug_Print 1 "Or use ${libIGCM}/purge_simulation.job to delete the full simulation." |
|---|
| 503 | IGCM_debug_Exit |
|---|
| 504 | fi |
|---|
| 505 | |
|---|
| 506 | IGCM_debug_PopStack "IGCM_config_StateCheck" |
|---|
| 507 | } |
|---|
| 508 | |
|---|
| 509 | #=================================== |
|---|
| 510 | function IGCM_config_Check |
|---|
| 511 | { |
|---|
| 512 | IGCM_debug_PushStack "IGCM_config_Check" |
|---|
| 513 | |
|---|
| 514 | # If one of the following modulo is not zero : |
|---|
| 515 | # we will issue an error then explain and exit in |
|---|
| 516 | # AA_job IGCM_debug_Verif_Exit call before binary submission |
|---|
| 517 | |
|---|
| 518 | echo |
|---|
| 519 | IGCM_debug_Print 1 "IGCM_config_Check" |
|---|
| 520 | echo |
|---|
| 521 | |
|---|
| 522 | typeset i |
|---|
| 523 | |
|---|
| 524 | # Check RebuildFrequency against key frequencies : PeriodLength ; PackFrequency ; TimeSeriesFrequency ; SeasonalFrequency |
|---|
| 525 | if ( [ ! X${config_Post_RebuildFrequency} = X${NULL_STR} ] && [ ! X${config_Post_RebuildFrequency} = XNONE ] ) ; then |
|---|
| 526 | AsynchronousRebuild=true |
|---|
| 527 | IGCM_debug_Print 1 "Asynchronous rebuild has been activated." |
|---|
| 528 | echo |
|---|
| 529 | # modulo (RebuildFrequency and PeriodLength/TimeSeriesFrequency/SeasonalFrequency) must be zero |
|---|
| 530 | IGCM_debug_Print 1 "Check coherence between RebuildFrequency and PeriodLength" |
|---|
| 531 | IGCM_post_CheckModuloFrequency config_Post_RebuildFrequency config_UserChoices_PeriodLength |
|---|
| 532 | IGCM_debug_Print 1 "Check coherence between PackFrequency and RebuildFrequency" |
|---|
| 533 | IGCM_post_CheckModuloFrequency config_Post_PackFrequency config_Post_RebuildFrequency |
|---|
| 534 | IGCM_debug_Print 1 "Check coherence between TimeSeriesFrequency and RebuildFrequency" |
|---|
| 535 | IGCM_post_CheckModuloFrequency config_Post_TimeSeriesFrequency config_Post_RebuildFrequency |
|---|
| 536 | IGCM_debug_Print 1 "Check coherence between SeasonalFrequency and RebuildFrequency" |
|---|
| 537 | IGCM_post_CheckModuloFrequency config_Post_SeasonalFrequency config_Post_RebuildFrequency |
|---|
| 538 | else |
|---|
| 539 | AsynchronousRebuild=false |
|---|
| 540 | IGCM_debug_Print 1 "Asynchronous rebuild has not been activated" |
|---|
| 541 | IGCM_debug_Print 1 "Proceed with standard post-treatment pathway" |
|---|
| 542 | echo |
|---|
| 543 | #modulo (PeriodLength and TimeSeriesFrequency/SeasonalFrequency) must be zero |
|---|
| 544 | IGCM_debug_Print 1 "Check coherence between TimeSeriesFrequency and PeriodLength" |
|---|
| 545 | IGCM_post_CheckModuloFrequency config_Post_TimeSeriesFrequency config_UserChoices_PeriodLength |
|---|
| 546 | IGCM_debug_Print 1 "Check coherence between SeasonalFrequency and PeriodLength" |
|---|
| 547 | IGCM_post_CheckModuloFrequency config_Post_SeasonalFrequency config_UserChoices_PeriodLength |
|---|
| 548 | fi |
|---|
| 549 | |
|---|
| 550 | # Check PackFrequency against other key frequencies |
|---|
| 551 | # Modulo (PackFrequency and TimeSeriesFrequency/SeasonalFrequency and PeriodLenght) must be zero |
|---|
| 552 | if ( [ ! X${config_Post_PackFrequency} = X${NULL_STR} ] && [ ! X${config_Post_PackFrequency} = XNONE ] ) ; then |
|---|
| 553 | Pack=true |
|---|
| 554 | # |
|---|
| 555 | IGCM_debug_Print 1 "Check coherence between PackFrequency and PeriodLength" |
|---|
| 556 | IGCM_post_CheckModuloFrequency config_Post_PackFrequency config_UserChoices_PeriodLength |
|---|
| 557 | IGCM_debug_Print 1 "Check coherence between TimeSeriesFrequency and PackFrequency" |
|---|
| 558 | IGCM_post_CheckModuloFrequency config_Post_TimeSeriesFrequency config_Post_PackFrequency |
|---|
| 559 | IGCM_debug_Print 1 "Check coherence between SeasonalFrequency and PackFrequency" |
|---|
| 560 | IGCM_post_CheckModuloFrequency config_Post_SeasonalFrequency config_Post_PackFrequency |
|---|
| 561 | else |
|---|
| 562 | Pack=false |
|---|
| 563 | fi |
|---|
| 564 | |
|---|
| 565 | # modulo (TimeSeriesFrequency and all Chunck2D) must be zero |
|---|
| 566 | NbJob=${#CHUNCK2D_SIZE[@]} |
|---|
| 567 | i=0 |
|---|
| 568 | until [ $i -ge $NbJob ]; do |
|---|
| 569 | value=${CHUNCK2D_SIZE[${i}]} |
|---|
| 570 | IGCM_debug_Print 1 "Check coherence between ${CHUNCK2D_NAME[${i}]} Chunck2D frequency and TimeSeriesFrequency" |
|---|
| 571 | IGCM_post_CheckModuloFrequency value config_Post_TimeSeriesFrequency |
|---|
| 572 | case ${value} in |
|---|
| 573 | *Y|*y) ;; |
|---|
| 574 | *) |
|---|
| 575 | IGCM_debug_Print 1 "All ChunckJob2D frequency must be expressed in year *Y|*y in comp.card" |
|---|
| 576 | IGCM_debug_Exit "This will stop the job" ;; |
|---|
| 577 | esac |
|---|
| 578 | (( i=i+1 )) |
|---|
| 579 | done |
|---|
| 580 | |
|---|
| 581 | # modulo (TimeSeriesFrequency and all Chunck3D) must be zero |
|---|
| 582 | NbJob=${#CHUNCK3D_SIZE[@]} |
|---|
| 583 | i=0 |
|---|
| 584 | until [ $i -ge $NbJob ]; do |
|---|
| 585 | value=${CHUNCK3D_SIZE[${i}]} |
|---|
| 586 | IGCM_debug_Print 1 "Check coherence between ${CHUNCK3D_NAME[${i}]} Chunck3D frequency and TimeSeriesFrequency" |
|---|
| 587 | IGCM_post_CheckModuloFrequency value config_Post_TimeSeriesFrequency |
|---|
| 588 | case ${value} in |
|---|
| 589 | *Y|*y) ;; |
|---|
| 590 | *) |
|---|
| 591 | IGCM_debug_Print 1 "All ChunckJob3D frequency must be expressed in year *Y|*y in comp.card" |
|---|
| 592 | IGCM_debug_Exit "This will stop the job" ;; |
|---|
| 593 | esac |
|---|
| 594 | (( i=i+1 )) |
|---|
| 595 | done |
|---|
| 596 | |
|---|
| 597 | # check to be sure there is enough space on temporary filesystems to run |
|---|
| 598 | echo |
|---|
| 599 | IGCM_debug_Print 1 "Check if there is enough space on temporary filesystem" |
|---|
| 600 | IGCM_sys_check_quota |
|---|
| 601 | |
|---|
| 602 | # check to be sure that RUN_DIR_PATH, that will be removed is not pointing to an important directory |
|---|
| 603 | echo |
|---|
| 604 | IGCM_debug_Print 1 "Check where RUN_DIR_PATH variable is pointing to" |
|---|
| 605 | IGCM_sys_check_path |
|---|
| 606 | |
|---|
| 607 | |
|---|
| 608 | IGCM_debug_PopStack "IGCM_config_Check" |
|---|
| 609 | } |
|---|
| 610 | |
|---|
| 611 | #=================================== |
|---|
| 612 | function IGCM_config_ConfigureExecution |
|---|
| 613 | { |
|---|
| 614 | IGCM_debug_PushStack " IGCM_config_ConfigureExecution" |
|---|
| 615 | |
|---|
| 616 | #echo |
|---|
| 617 | IGCM_debug_Print 1 " IGCM_config_ConfigureExecution" |
|---|
| 618 | #echo |
|---|
| 619 | |
|---|
| 620 | typeset ExeNameIn ExeNameFirst CompNameFirst configCardPath comp i |
|---|
| 621 | typeset tempvar tempvarMPI tempvarNOD NbElts NbExec |
|---|
| 622 | |
|---|
| 623 | # config.card path |
|---|
| 624 | configCardPath=$1 |
|---|
| 625 | |
|---|
| 626 | coreNumber=0 |
|---|
| 627 | mpiTasks=0 |
|---|
| 628 | openMPthreads=0 |
|---|
| 629 | NbExec=0 |
|---|
| 630 | |
|---|
| 631 | OK_PARA_MPI=false |
|---|
| 632 | OK_PARA_OMP=false |
|---|
| 633 | OK_PARA_NOD=false |
|---|
| 634 | OK_PARA_MPMD=false |
|---|
| 635 | |
|---|
| 636 | for comp in ${config_ListOfComponents[*]} ; do |
|---|
| 637 | |
|---|
| 638 | # Manage component executable |
|---|
| 639 | IGCM_card_DefineArrayFromOption ${configCardPath} Executable ${comp} |
|---|
| 640 | |
|---|
| 641 | eval ExeNameIn=\${config_Executable_${comp}[0]} |
|---|
| 642 | |
|---|
| 643 | # NO order in config.card for parallelized values ! |
|---|
| 644 | # just use suffix : MPI , OMP and NOD (for number of NODes.) |
|---|
| 645 | |
|---|
| 646 | # NOD is the number of NODes allocated |
|---|
| 647 | eval ${comp}_PROC_NOD=0 |
|---|
| 648 | |
|---|
| 649 | # MPI is the number of MPI processus per nodes |
|---|
| 650 | eval ${comp}_PROC_MPI=0 |
|---|
| 651 | |
|---|
| 652 | # OMP is the number of OpenMP threads per MPI processus |
|---|
| 653 | eval ${comp}_PROC_OMP=0 |
|---|
| 654 | |
|---|
| 655 | # Only if we really have an executable for the component : |
|---|
| 656 | if ( [ "X${ExeNameIn}" != X\"\" ] && [ "X${ExeNameIn}" != "Xinca.dat" ] ) ; then |
|---|
| 657 | |
|---|
| 658 | IGCM_debug_Print 1 ${comp} |
|---|
| 659 | |
|---|
| 660 | # Keep the first executable found and the first CompName |
|---|
| 661 | eval ExeNameFirst=${ExeNameIn} |
|---|
| 662 | CompNameFirst=${comp} |
|---|
| 663 | |
|---|
| 664 | # Are we a second executable? |
|---|
| 665 | (( NbExec = NbExec + 1 )) |
|---|
| 666 | |
|---|
| 667 | # set 1 MPI task, 1 OpenMP thread and 1 node as default |
|---|
| 668 | eval ${comp}_PROC_MPI=1 |
|---|
| 669 | eval ${comp}_PROC_OMP=1 |
|---|
| 670 | eval ${comp}_PROC_NOD=1 |
|---|
| 671 | |
|---|
| 672 | eval NbElts=\${#config_Executable_${comp}[@]} |
|---|
| 673 | |
|---|
| 674 | if [ ${NbElts} -gt 2 ] ; then |
|---|
| 675 | # |
|---|
| 676 | # CURRENT METHOD TO SPECIFY MPI AND OMP RESSOURCES |
|---|
| 677 | # |
|---|
| 678 | i=2 |
|---|
| 679 | while [ ${i} -lt ${NbElts} ] ; do |
|---|
| 680 | eval tempvar=\${config_Executable_${comp}[${i}]} |
|---|
| 681 | IGCM_debug_Print 2 ${tempvar} |
|---|
| 682 | |
|---|
| 683 | if [ X${tempvar} = X ] ; then |
|---|
| 684 | IGCM_debug_Print 2 "Error reading MPI/OMP parameters !!!" |
|---|
| 685 | IGCM_debug_Exit "Check your config.card. Exit now" |
|---|
| 686 | IGCM_debug_Verif_Exit |
|---|
| 687 | fi |
|---|
| 688 | |
|---|
| 689 | case ${tempvar} in |
|---|
| 690 | *[mM][pP][iI]*) |
|---|
| 691 | # Read MPI parameter for composante |
|---|
| 692 | eval ${comp}_PROC_MPI=$( echo ${tempvar} | tr '[a-z]' '[A-Z]' | sed -e "s/MPI//" ) |
|---|
| 693 | OK_PARA_MPI=true;; |
|---|
| 694 | *[oO][mM][pP]*) |
|---|
| 695 | # Read OMP parameter for composante |
|---|
| 696 | eval ${comp}_PROC_OMP=$( echo ${tempvar} | tr '[a-z]' '[A-Z]' | sed -e "s/OMP//" ) |
|---|
| 697 | ;; |
|---|
| 698 | *[nN][oO][dD]*) |
|---|
| 699 | # Read NOD (NumBer of Nodes) parameter for composante |
|---|
| 700 | eval ${comp}_PROC_NOD=$( echo ${tempvar} | tr '[a-z]' '[A-Z]' | sed -e "s/NOD//" ) |
|---|
| 701 | OK_PARA_NOD=true |
|---|
| 702 | OK_PARA_MPI=true |
|---|
| 703 | ;; |
|---|
| 704 | esac |
|---|
| 705 | (( i = i + 1 )) |
|---|
| 706 | done |
|---|
| 707 | else |
|---|
| 708 | # |
|---|
| 709 | # BACKWARD COMPATIBILITY NOT SUPPORTED ANYMORE |
|---|
| 710 | # |
|---|
| 711 | IGCM_debug_Exit "You are using a deprecated ressources specification mechanism in your config.card" |
|---|
| 712 | IGCM_debug_Exit "Please check : https://forge.ipsl.jussieu.fr/igcmg_doc/wiki/DocEsetup#ThesectionExecutable" |
|---|
| 713 | IGCM_debug_Exit "Please modify ${configCardPath}" |
|---|
| 714 | exit |
|---|
| 715 | fi |
|---|
| 716 | if [ ${comp}_PROC_NOD -gt 1 ] ; then |
|---|
| 717 | if ( [ ${comp}_PROC_MPI -gt 1 ] && [ ${comp}_PROC_OMP -gt 1 ] ) ; then |
|---|
| 718 | IGCM_debug_Print 2 "Error using MPI/OMP/NOD parameters !!!" |
|---|
| 719 | IGCM_debug_Exit "It is not allowed to use MPI and OMP and NOD parameters for the same component" |
|---|
| 720 | IGCM_debug_Exit "Check your config.card. Exit now" |
|---|
| 721 | IGCM_debug_Verif_Exit |
|---|
| 722 | fi |
|---|
| 723 | if [ "${comp}" != "IOS" ] ; then |
|---|
| 724 | IGCM_debug_Print 2 "Error using NOD parameter !!!" |
|---|
| 725 | IGCM_debug_Exit "NOD parameter is only available for IOS component " |
|---|
| 726 | IGCM_debug_Exit "Check your config.card. Exit now" |
|---|
| 727 | IGCM_debug_Verif_Exit |
|---|
| 728 | fi |
|---|
| 729 | fi |
|---|
| 730 | |
|---|
| 731 | eval tempvarMPI=\${${comp}_PROC_MPI} |
|---|
| 732 | eval tempvarNOD=\${${comp}_PROC_NOD} |
|---|
| 733 | eval tempvarOMP=\${${comp}_PROC_OMP} |
|---|
| 734 | |
|---|
| 735 | # set OMP mode if more than 1 OMP thread. |
|---|
| 736 | [ ${tempvarOMP} -ge 2 ] && OK_PARA_OMP=true |
|---|
| 737 | |
|---|
| 738 | # Number of OMP threads |
|---|
| 739 | [ ${openMPthreads} -lt ${tempvarOMP} ] && openMPthreads=${tempvarOMP} |
|---|
| 740 | |
|---|
| 741 | # SUM UP NUMBER OF CORES |
|---|
| 742 | if [ ${comp}_PROC_NOD -gt 1 ] ; then |
|---|
| 743 | (( coreNumber = coreNumber + tempvarNOD * NB_CORE_PER_NODE )) |
|---|
| 744 | else |
|---|
| 745 | (( coreNumber = coreNumber + tempvarMPI * tempvarNOD * tempvarOMP )) |
|---|
| 746 | fi |
|---|
| 747 | # SUM UP NUMBER OF MPI TASKS |
|---|
| 748 | (( mpiTasks = mpiTasks + tempvarMPI * tempvarNOD )) |
|---|
| 749 | fi |
|---|
| 750 | done |
|---|
| 751 | |
|---|
| 752 | # MANDATORY FOR THE OPA9.DRIVER. USED TO EDIT OPA NAMELIST |
|---|
| 753 | # WE SHOULD PLANIFY NUM_PROC_??? DEPRECATION |
|---|
| 754 | NUM_PROC_CPL=${CPL_PROC_MPI} |
|---|
| 755 | NUM_PROC_OCE=${OCE_PROC_MPI} |
|---|
| 756 | NUM_PROC_ATM=${ATM_PROC_MPI} |
|---|
| 757 | |
|---|
| 758 | # set MPMD mode if more than 2 executable names. |
|---|
| 759 | [ ${NbExec} -ge 2 ] && OK_PARA_MPMD=true |
|---|
| 760 | |
|---|
| 761 | # Define the execution type we are running in |
|---|
| 762 | if ( ${OK_PARA_MPMD} ) ; then |
|---|
| 763 | if ( ${OK_PARA_MPI} ) ; then |
|---|
| 764 | # MPMD always implies MPI |
|---|
| 765 | executionType=1 |
|---|
| 766 | fi |
|---|
| 767 | if ( ${OK_PARA_OMP} ) ; then |
|---|
| 768 | # MPMD + MPI/OMP |
|---|
| 769 | executionType=2 |
|---|
| 770 | fi |
|---|
| 771 | else |
|---|
| 772 | if ( ( ${OK_PARA_MPI} ) && ( ${OK_PARA_OMP} ) ) ; then |
|---|
| 773 | # SPMD + MPI/OMP |
|---|
| 774 | executionType=3 |
|---|
| 775 | elif ( ( ${OK_PARA_MPI} ) && ( ! ${OK_PARA_OMP} ) ) ; then |
|---|
| 776 | # SPMD + MPI only |
|---|
| 777 | executionType=4 |
|---|
| 778 | elif ( ( ! ${OK_PARA_MPI} ) && ( ${OK_PARA_OMP} ) ) ; then |
|---|
| 779 | # SPMD + OMP only |
|---|
| 780 | executionType=5 |
|---|
| 781 | elif ( ( ! ${OK_PARA_MPI} ) && ( ! ${OK_PARA_OMP} ) ) ; then |
|---|
| 782 | # SEQUENTIAL THEN |
|---|
| 783 | executionType=6 |
|---|
| 784 | coreNumber=1 |
|---|
| 785 | fi |
|---|
| 786 | fi |
|---|
| 787 | |
|---|
| 788 | IGCM_debug_Print 1 "MPI/OMP treatment coreNumber = ${coreNumber}" |
|---|
| 789 | IGCM_debug_Print 1 "MPI/OMP treatment mpiTasks = ${mpiTasks}" |
|---|
| 790 | IGCM_debug_Print 1 "MPI/OMP treatment openMPthreads = ${openMPthreads}" |
|---|
| 791 | IGCM_debug_Print 1 "MPI/OMP treatment executionType = ${executionType}" |
|---|
| 792 | |
|---|
| 793 | IGCM_debug_PopStack "IGCM_config_ConfigureExecution" |
|---|
| 794 | } |
|---|
| 795 | |
|---|
| 796 | #=================================== |
|---|
| 797 | function IGCM_config_PeriodStart |
|---|
| 798 | { |
|---|
| 799 | IGCM_debug_PushStack "IGCM_config_PeriodStart" |
|---|
| 800 | |
|---|
| 801 | echo |
|---|
| 802 | IGCM_debug_Print 1 "IGCM_config_PeriodStart" |
|---|
| 803 | echo |
|---|
| 804 | |
|---|
| 805 | if ( ${FirstInitialize} ) ; then |
|---|
| 806 | #================================================# |
|---|
| 807 | # Initialize date/period information # |
|---|
| 808 | #================================================# |
|---|
| 809 | |
|---|
| 810 | IGCM_date_GetYearMonthDay ${DateBegin} year month day |
|---|
| 811 | IGCM_config_DaysInPeriodLength |
|---|
| 812 | |
|---|
| 813 | PeriodDateBegin=${DateBegin} |
|---|
| 814 | PeriodDateEnd=$( IGCM_date_AddDaysToGregorianDate ${DateBegin} $(( ${PeriodLengthInDays} - 1 )) ) |
|---|
| 815 | CumulPeriod=1 |
|---|
| 816 | |
|---|
| 817 | #=================================================# |
|---|
| 818 | # Write updated run.card # |
|---|
| 819 | #=================================================# |
|---|
| 820 | |
|---|
| 821 | #Correct run.card Configuration for this period |
|---|
| 822 | IGCM_card_WriteOption ${SUBMIT_DIR}/run.card Configuration PeriodDateBegin ${PeriodDateBegin} |
|---|
| 823 | IGCM_card_WriteOption ${SUBMIT_DIR}/run.card Configuration PeriodDateEnd ${PeriodDateEnd} |
|---|
| 824 | IGCM_card_WriteOption ${SUBMIT_DIR}/run.card Configuration CumulPeriod ${CumulPeriod} |
|---|
| 825 | if [ X$( grep "SubmitPath" ${SUBMIT_DIR}/run.card ) != X ] ; then |
|---|
| 826 | IGCM_card_WriteOption ${SUBMIT_DIR}/run.card Configuration SubmitPath ${SUBMIT_DIR} |
|---|
| 827 | fi |
|---|
| 828 | |
|---|
| 829 | IGCM_card_WriteOption ${SUBMIT_DIR}/run.card Configuration PeriodState "Running" |
|---|
| 830 | |
|---|
| 831 | else |
|---|
| 832 | #================================================# |
|---|
| 833 | # The file run.card allready exist # |
|---|
| 834 | #================================================# |
|---|
| 835 | |
|---|
| 836 | # Test state of run in run.card. Will schedule an exit if another process setted it to "Fatal" |
|---|
| 837 | IGCM_config_StateCheck |
|---|
| 838 | # And EXIT if not OK |
|---|
| 839 | IGCM_debug_Verif_Exit |
|---|
| 840 | |
|---|
| 841 | #===================================# |
|---|
| 842 | # Read updated run.card # |
|---|
| 843 | #===================================# |
|---|
| 844 | |
|---|
| 845 | IGCM_card_DefineVariableFromOption ${SUBMIT_DIR}/run.card Configuration PeriodDateBegin |
|---|
| 846 | IGCM_card_DefineVariableFromOption ${SUBMIT_DIR}/run.card Configuration PeriodDateEnd |
|---|
| 847 | IGCM_card_DefineVariableFromOption ${SUBMIT_DIR}/run.card Configuration CumulPeriod |
|---|
| 848 | |
|---|
| 849 | PeriodDateBegin=$( IGCM_date_ConvertFormatToGregorian ${run_Configuration_PeriodDateBegin} ) |
|---|
| 850 | PeriodDateEnd=$( IGCM_date_ConvertFormatToGregorian ${run_Configuration_PeriodDateEnd} ) |
|---|
| 851 | CumulPeriod=${run_Configuration_CumulPeriod} |
|---|
| 852 | |
|---|
| 853 | LastPeriodDateEnd=$( IGCM_date_AddDaysToGregorianDate $( IGCM_date_ConvertFormatToGregorian ${PeriodDateBegin} ) -1 ) |
|---|
| 854 | |
|---|
| 855 | if [ ${Period} = 1 ]; then |
|---|
| 856 | # save last Job output and current run.card |
|---|
| 857 | typeset Potential |
|---|
| 858 | IGCM_sys_Cd ${SUBMIT_DIR} |
|---|
| 859 | # |
|---|
| 860 | IGCM_debug_Print 2 "Save previous ksh job output" |
|---|
| 861 | for Potential in $( ls ${Script_Output_Prefix}_${config_UserChoices_JobName}.[0-9][0-9][0-9][0-9][0-9][0-9] ) ; do |
|---|
| 862 | if [ X${Pack} = Xtrue ] ; then |
|---|
| 863 | ( IGCM_sys_TestFileBuffer ${R_BUF_KSH}/${Potential} ) || IGCM_sys_Cp ${Potential} ${R_BUF_KSH}/${Potential}.$$ |
|---|
| 864 | else |
|---|
| 865 | ( IGCM_sys_TestFileArchive ${R_OUT_KSH}/${Potential} ) || IGCM_sys_Put_Out ${Potential} ${R_OUT_KSH}/${Potential}.$$ NOMOVE |
|---|
| 866 | IGCM_debug_Print 1 "Save of previous ksh job output is not done for Pack=false" |
|---|
| 867 | fi |
|---|
| 868 | done |
|---|
| 869 | |
|---|
| 870 | # |
|---|
| 871 | IGCM_debug_Print 2 "Save current run.card" |
|---|
| 872 | IGCM_card_CheckConflict run.card |
|---|
| 873 | |
|---|
| 874 | if [ X${Pack} = Xtrue ] ; then |
|---|
| 875 | IGCM_sys_Cp ${SUBMIT_DIR}/run.card ${R_BUF_KSH}/run.card |
|---|
| 876 | else |
|---|
| 877 | IGCM_sys_Put_Out ${SUBMIT_DIR}/run.card ${R_OUT_KSH}/run.card NOMOVE |
|---|
| 878 | IGCM_debug_Print 1 "Save of run.card is not done for Pack=false" |
|---|
| 879 | fi |
|---|
| 880 | # |
|---|
| 881 | IGCM_sys_Cd ${RUN_DIR} |
|---|
| 882 | else |
|---|
| 883 | unset FileToBeDeleted |
|---|
| 884 | fi |
|---|
| 885 | |
|---|
| 886 | # Determine number of day(s) in PeriodLength |
|---|
| 887 | IGCM_date_GetYearMonthDay $PeriodDateBegin year month day |
|---|
| 888 | IGCM_config_DaysInPeriodLength |
|---|
| 889 | |
|---|
| 890 | # Check coherency between (PeriodDateBegin, PeriodDateEnd) and (DateBegin, CumulPeriod, PeriodLength) |
|---|
| 891 | IGCM_config_DateCoherency |
|---|
| 892 | # And EXIT if not OK |
|---|
| 893 | IGCM_debug_Verif_Exit |
|---|
| 894 | |
|---|
| 895 | # Test state of run in run.card. Will schedule an exit if another process setted it to "Fatal" |
|---|
| 896 | IGCM_config_StateCheck |
|---|
| 897 | # And EXIT if not OK |
|---|
| 898 | IGCM_debug_Verif_Exit |
|---|
| 899 | |
|---|
| 900 | # We can say we are "Running" now. |
|---|
| 901 | IGCM_card_WriteOption ${SUBMIT_DIR}/run.card Configuration PeriodState "Running" |
|---|
| 902 | fi |
|---|
| 903 | |
|---|
| 904 | # BEGIN: SHOULD GO IN A FUNCTION FROM libIGCM_date.ksh |
|---|
| 905 | # Compute year_m1 and year_p1 (year minus 1Y and year plus 1Y) |
|---|
| 906 | year_m1=$(( year - 1 )) |
|---|
| 907 | year_p1=$(( year + 1 )) |
|---|
| 908 | # Compute month_m1 (month minus 1M) |
|---|
| 909 | # Compute yyyymm_m1 (yyyymm minus 1M) |
|---|
| 910 | month_m1=$(( 10#${month} - 1 )) |
|---|
| 911 | if [ ${month_m1} = 0 ]; then |
|---|
| 912 | month_m1=12 |
|---|
| 913 | yyyymm_m1=${year_m1}12 |
|---|
| 914 | elif [ ${month_m1} -le 9 ]; then |
|---|
| 915 | month_m1=0${month_m1} |
|---|
| 916 | yyyymm_m1=${year}${month_m1} |
|---|
| 917 | else |
|---|
| 918 | yyyymm_m1=${year}${month_m1} |
|---|
| 919 | fi |
|---|
| 920 | # Compute month_p1 (month plus 1M) |
|---|
| 921 | # Compute yyyymm_p1 (yyyymm plus 1M) |
|---|
| 922 | month_p1=$(( 10#${month} + 1 )) |
|---|
| 923 | if [ ${month_p1} = 13 ]; then |
|---|
| 924 | month_p1=01 |
|---|
| 925 | yyyymm_p1=${year_p1}01 |
|---|
| 926 | elif [ ${month_p1} -le 9 ]; then |
|---|
| 927 | month_p1=0${month_p1} |
|---|
| 928 | yyyymm_p1=${year}${month_p1} |
|---|
| 929 | else |
|---|
| 930 | yyyymm_p1=${year}${month_p1} |
|---|
| 931 | fi |
|---|
| 932 | |
|---|
| 933 | #===================================================================# |
|---|
| 934 | # Calculate CyclicYear to be used for looping over a given forcing # |
|---|
| 935 | # period. Add CyclicBegin and CyclicEnd in config.card UserChoices. # |
|---|
| 936 | #===================================================================# |
|---|
| 937 | |
|---|
| 938 | # To use the variable CyclicYear, one must add in config.card CyclicBegin and CyclicEnd. |
|---|
| 939 | # CyclicBegin is the first year in the cycle. CyclicEnd is the last year included in the cycle. |
|---|
| 940 | if ( [ ! X${config_UserChoices_CyclicBegin} = X ] && [ ! X${config_UserChoices_CyclicEnd} = X ] ) ; then |
|---|
| 941 | CycleNb=$(( ${config_UserChoices_CyclicEnd} - ${config_UserChoices_CyclicBegin} + 1 )) |
|---|
| 942 | CyclicYear_p1=NOTDEFINED |
|---|
| 943 | |
|---|
| 944 | # For current year |
|---|
| 945 | yeartmp=$year |
|---|
| 946 | diffy=$(( $yeartmp - ${config_UserChoices_CyclicBegin} )) |
|---|
| 947 | while [ $diffy -lt 0 ] ; do |
|---|
| 948 | yeartmp=$(( ${yeartmp} + ${CycleNb} )) |
|---|
| 949 | diffy=$(( $yeartmp - ${config_UserChoices_CyclicBegin} )) |
|---|
| 950 | done |
|---|
| 951 | CyclicYear=$(( ( ${diffy} % ${CycleNb} ) + ${config_UserChoices_CyclicBegin} )) |
|---|
| 952 | |
|---|
| 953 | # For next coming year |
|---|
| 954 | yeartmp=$(( $year + 1 )) |
|---|
| 955 | diffy=$(( $yeartmp - ${config_UserChoices_CyclicBegin} )) |
|---|
| 956 | while [ $diffy -lt 0 ] ; do |
|---|
| 957 | yeartmp=$(( ${yeartmp} + ${CycleNb} )) |
|---|
| 958 | diffy=$(( $yeartmp - ${config_UserChoices_CyclicBegin} )) |
|---|
| 959 | done |
|---|
| 960 | CyclicYear_p1=$(( ( ${diffy} % ${CycleNb} ) + ${config_UserChoices_CyclicBegin} )) |
|---|
| 961 | |
|---|
| 962 | IGCM_debug_Print 1 "CyclicYear = ${CyclicYear}, CyclicYear_p1 = ${CyclicYear_p1}, current year=$year" |
|---|
| 963 | else |
|---|
| 964 | CyclicYear="ERROR_CyclicYear_Variable_Not_Defined" |
|---|
| 965 | CyclicYear_p1="ERROR_CyclicYear_p1_Variable_Not_Defined" |
|---|
| 966 | IGCM_debug_Print 1 "CyclicYear wont be use without adding CyclicBegin and CyclicEnd in config.card" |
|---|
| 967 | fi |
|---|
| 968 | |
|---|
| 969 | # END: SHOULD GO IN A FUNCTION FROM libIGCM_date.ksh |
|---|
| 970 | |
|---|
| 971 | #===================================================================# |
|---|
| 972 | # Prepare variables available for ${COMP}.card and ${COMP}.driver # |
|---|
| 973 | # But available to any son functions # |
|---|
| 974 | #===================================================================# |
|---|
| 975 | |
|---|
| 976 | # Period Length In Days between DateBegin and DateCurrent (at end of period == PeriodDateEnd !) |
|---|
| 977 | (( SimulationLengthInDays = $( IGCM_date_DaysBetweenGregorianDate ${PeriodDateEnd} ${DateBegin} ) + 1 )) |
|---|
| 978 | |
|---|
| 979 | # Debug Print : |
|---|
| 980 | echo |
|---|
| 981 | IGCM_debug_Print 1 "IGCM_config_PeriodStart : Before Execution" |
|---|
| 982 | IGCM_debug_Print 1 "Year of simulation : ${year}" |
|---|
| 983 | IGCM_debug_Print 1 "Month of simulation : ${month}" |
|---|
| 984 | IGCM_debug_Print 1 "PeriodLengthInDays : ${PeriodLengthInDays}" |
|---|
| 985 | IGCM_debug_Print 1 "PeriodDateBegin : ${PeriodDateBegin}" |
|---|
| 986 | IGCM_debug_Print 1 "PeriodDateEnd : ${PeriodDateEnd}" |
|---|
| 987 | IGCM_debug_Print 1 "SimulationLengthInDays : ${SimulationLengthInDays}" |
|---|
| 988 | IGCM_debug_Print 1 "ExperienceLengthInDays : ${ExperienceLengthInDays}" |
|---|
| 989 | |
|---|
| 990 | #================================================================# |
|---|
| 991 | # Prepare variables available for comp_finalyze # |
|---|
| 992 | #================================================================# |
|---|
| 993 | |
|---|
| 994 | # Period for save files |
|---|
| 995 | DatesPeriod=${PeriodDateBegin}_${PeriodDateEnd} |
|---|
| 996 | |
|---|
| 997 | # Prefix for save files of this period |
|---|
| 998 | PREFIX=${config_UserChoices_JobName}_${DatesPeriod} |
|---|
| 999 | |
|---|
| 1000 | # List of files that will be deleted in RUN_DIR after run |
|---|
| 1001 | [ -f stack ] && FileToBeDeleted[0]="stack" |
|---|
| 1002 | |
|---|
| 1003 | # Test if the same run as already been saved : |
|---|
| 1004 | if [ X${JobType} = XRUN ] ; then |
|---|
| 1005 | if [ ${DRYRUN} -le 0 ] ; then |
|---|
| 1006 | if ( IGCM_sys_TestFileBuffer ${R_BUF_KSH}/${PREFIX}_${Exe_Output} ) ; then |
|---|
| 1007 | IGCM_debug_Exit "IGCM_config_PeriodStart" "You are currently re-running an old job." |
|---|
| 1008 | IGCM_debug_Print 1 "Because of readonly permissions, you can't re-run a job when saved files" |
|---|
| 1009 | IGCM_debug_Print 1 " are still in the ARCHIVE directory. You must deleted those files, or " |
|---|
| 1010 | IGCM_debug_Print 1 " the whole ${R_SAVE} tree. See different clean_*.job in ${libIGCM} directory." |
|---|
| 1011 | IGCM_debug_Print 1 " This exit has been initiated because at least ${R_BUF_KSH}/${PREFIX}_${Exe_Output} exists." |
|---|
| 1012 | IGCM_debug_Verif_Exit |
|---|
| 1013 | fi |
|---|
| 1014 | fi |
|---|
| 1015 | else |
|---|
| 1016 | if ( IGCM_sys_TestFileBuffer ${R_BUF_KSH}/${PREFIX}_${Exe_Output} ) ; then |
|---|
| 1017 | IGCM_debug_Print 1 "IGCM_config_PeriodStart" "RErun an old job. Allowed in DEBUG or DEV mode." |
|---|
| 1018 | fi |
|---|
| 1019 | fi |
|---|
| 1020 | |
|---|
| 1021 | #================================================================# |
|---|
| 1022 | # Prepare variables available for binary execution # |
|---|
| 1023 | # Call function for creation of run script # |
|---|
| 1024 | # Only done once per job # |
|---|
| 1025 | #================================================================# |
|---|
| 1026 | |
|---|
| 1027 | if [ ${Period} -eq 1 ]; then |
|---|
| 1028 | # Define the execution context (MPMD, SPMD, MPI/OMP ...) |
|---|
| 1029 | IGCM_config_ConfigureExecution ${SUBMIT_DIR}/config.card |
|---|
| 1030 | # Create the execution script for the current context |
|---|
| 1031 | IGCM_sys_build_execution_scripts |
|---|
| 1032 | fi |
|---|
| 1033 | |
|---|
| 1034 | ExecutionFail=false |
|---|
| 1035 | |
|---|
| 1036 | # Update the rabbitMQ queue |
|---|
| 1037 | IGCM_debug_BigBro_Update |
|---|
| 1038 | |
|---|
| 1039 | IGCM_debug_PopStack "IGCM_config_PeriodStart" |
|---|
| 1040 | } |
|---|
| 1041 | |
|---|
| 1042 | #=================================== |
|---|
| 1043 | function IGCM_config_SaveSourceModifications |
|---|
| 1044 | { |
|---|
| 1045 | IGCM_debug_PushStack "IGCM_config_SaveSourceModifications" |
|---|
| 1046 | |
|---|
| 1047 | typeset ExeOutDateMax listVarEnv |
|---|
| 1048 | ExeOutDateMax=$1 |
|---|
| 1049 | |
|---|
| 1050 | listVarEnv="ExeOutDateMax,R_OUT_EXE,PREFIX,SUBMIT_DIR" |
|---|
| 1051 | IGCM_sys_RshMaster "\ |
|---|
| 1052 | . ${libIGCM}/libIGCM_sys/libIGCM_sys.ksh; \ |
|---|
| 1053 | export ExeOutDateMax=${ExeOutDateMax};\ |
|---|
| 1054 | export R_OUT_EXE=${R_OUT_EXE};\ |
|---|
| 1055 | export PREFIX=${PREFIX};\ |
|---|
| 1056 | export SUBMIT_DIR=${SUBMIT_DIR};\ |
|---|
| 1057 | export listVarEnv=${listVarEnv};\ |
|---|
| 1058 | Script_Output=out_SaveSourceModifications;\ |
|---|
| 1059 | IGCM_sys_Qsub ${libIGCM}/SaveSourceModifications.job ${ExeOutDateMax} ${R_OUT_EXE} ${PREFIX} ${SUBMIT_DIR}" |
|---|
| 1060 | |
|---|
| 1061 | IGCM_debug_PopStack "IGCM_config_SaveSourceModifications" |
|---|
| 1062 | } |
|---|
| 1063 | |
|---|
| 1064 | #=================================== |
|---|
| 1065 | function IGCM_config_PeriodEnd |
|---|
| 1066 | { |
|---|
| 1067 | IGCM_debug_PushStack "IGCM_config_PeriodEnd" |
|---|
| 1068 | |
|---|
| 1069 | echo |
|---|
| 1070 | IGCM_debug_Print 1 "IGCM_config_PeriodEnd" |
|---|
| 1071 | echo |
|---|
| 1072 | |
|---|
| 1073 | if [ ${DRYRUN} -le 1 ] ; then |
|---|
| 1074 | |
|---|
| 1075 | IGCM_debug_Print 1 "Check components binary : size and creation date" |
|---|
| 1076 | |
|---|
| 1077 | typeset LS_comp LS_bin ExeDate ExeCpuLog NextExeSize LastCompExeSize |
|---|
| 1078 | typeset comp i |
|---|
| 1079 | typeset ExeNameIn ExeNameOut UpdateExe ExeSecDateMax |
|---|
| 1080 | |
|---|
| 1081 | #==================================# |
|---|
| 1082 | # Get last Exe Size # |
|---|
| 1083 | #==================================# |
|---|
| 1084 | |
|---|
| 1085 | (( i=0 )) |
|---|
| 1086 | if ( ${FirstInitialize} ) ; then |
|---|
| 1087 | run_Log_LastExeSize="" |
|---|
| 1088 | for comp in ${config_ListOfComponents[*]} ; do |
|---|
| 1089 | run_Log_LastExeSize[$i]=0 |
|---|
| 1090 | (( i=i+1 )) |
|---|
| 1091 | done |
|---|
| 1092 | else |
|---|
| 1093 | IGCM_card_DefineArrayFromOption ${SUBMIT_DIR}/run.card Log LastExeSize |
|---|
| 1094 | fi |
|---|
| 1095 | #==================================# |
|---|
| 1096 | # And Build ExeDate # |
|---|
| 1097 | #==================================# |
|---|
| 1098 | |
|---|
| 1099 | # ExeDate = ATM_Jun_12_09:34-SRF_Jun_12_09:34-OCE_Jun_12_09:34-ICE_Jun_12_09:34-CPL_Jun_12_09:33 |
|---|
| 1100 | # Would be nice to have next line but no way to format ls output (need to ls -l --time-style "+%Y-%m-%dT%H:%M") |
|---|
| 1101 | # ExeDate = ATM_2009-06-12T09:34+SRF_2009-06-12T09:34+OCE_2009-06-12T09:34+ICE_2009-06-12T09:34+CPL_2009-06-12T09:34 |
|---|
| 1102 | ExeDate="" |
|---|
| 1103 | NextExeSize="( " |
|---|
| 1104 | (( i=0 )) |
|---|
| 1105 | UpdateExe=false |
|---|
| 1106 | (( ExeSecDateMax = 0 )) |
|---|
| 1107 | for comp in ${config_ListOfComponents[*]} ; do |
|---|
| 1108 | |
|---|
| 1109 | IGCM_debug_Print 3 ${comp} |
|---|
| 1110 | |
|---|
| 1111 | eval ExeNameIn=\${config_Executable_${comp}[0]} |
|---|
| 1112 | eval ExeNameOut=\${config_Executable_${comp}[1]} |
|---|
| 1113 | # Only if we really have an executable for the component : |
|---|
| 1114 | if [ X${ExeNameIn} = X\"\" ] ; then |
|---|
| 1115 | # If there is no exe file for this component |
|---|
| 1116 | (( ExeSize=0 )) |
|---|
| 1117 | else |
|---|
| 1118 | eval ExeNameIn=${ExeNameIn} |
|---|
| 1119 | LS_bin=${R_EXE}/${ExeNameIn} |
|---|
| 1120 | IGCM_sys_FileSize ${LS_bin} ExeSize |
|---|
| 1121 | |
|---|
| 1122 | set +A LS_comp -- $( LC_TIME=en_US ls -l ${LS_bin} ) |
|---|
| 1123 | if [ X${ExeDate} = X ] ; then |
|---|
| 1124 | # First component exe date |
|---|
| 1125 | ExeDate=${comp}_${LS_comp[5]}_${LS_comp[6]} |
|---|
| 1126 | else |
|---|
| 1127 | ExeDate=${ExeDate}-${comp}_${LS_comp[5]}_${LS_comp[6]} |
|---|
| 1128 | fi |
|---|
| 1129 | ExeDate=${ExeDate}_${LS_comp[7]} |
|---|
| 1130 | fi |
|---|
| 1131 | |
|---|
| 1132 | if [ ${i} -eq 0 ] ; then |
|---|
| 1133 | # First component |
|---|
| 1134 | NextExeSize="( "${ExeSize} |
|---|
| 1135 | else |
|---|
| 1136 | NextExeSize=${NextExeSize}", "${ExeSize} |
|---|
| 1137 | fi |
|---|
| 1138 | LastCompExeSize=${run_Log_LastExeSize[$i]} |
|---|
| 1139 | (( i=i+1 )) |
|---|
| 1140 | |
|---|
| 1141 | if [ ${ExeSize} -ne ${LastCompExeSize} ] ; then |
|---|
| 1142 | if ( ${FirstInitialize} ) ; then |
|---|
| 1143 | IGCM_debug_Print 1 "Save first ${ExeNameIn} in ${R_OUT_EXE} !" |
|---|
| 1144 | else |
|---|
| 1145 | IGCM_debug_Print 1 "${ExeNameIn} has changed in ${R_EXE} !" |
|---|
| 1146 | IGCM_debug_Print 1 "Save latest ${ExeNameIn} in ${R_OUT_EXE} !" |
|---|
| 1147 | FileToBeDeleted[${#FileToBeDeleted[@]}]=${ExeNameOut} |
|---|
| 1148 | fi |
|---|
| 1149 | IGCM_sys_Put_Out ${ExeNameOut} ${R_OUT_EXE}/${PREFIX}_${ExeNameIn} rw |
|---|
| 1150 | UpdateExe=true |
|---|
| 1151 | |
|---|
| 1152 | # SD : switch off for now |
|---|
| 1153 | #IGCM_sys_GetDate_FichWork ${LS_bin} ExeSecDate |
|---|
| 1154 | #if [ $ExeSecDateMax -lt $ExeSecDate ] ; then |
|---|
| 1155 | # ExeSecDateMax=$ExeSecDate |
|---|
| 1156 | #fi |
|---|
| 1157 | fi |
|---|
| 1158 | done |
|---|
| 1159 | |
|---|
| 1160 | # SD : switch off for now |
|---|
| 1161 | #if ( ${UpdateExe} ) ; then |
|---|
| 1162 | # echo "Launch SaveSourceModifications." |
|---|
| 1163 | # IGCM_config_SaveSourceModifications ${ExeSecDateMax} |
|---|
| 1164 | #fi |
|---|
| 1165 | |
|---|
| 1166 | NextExeSize=${NextExeSize}" )" |
|---|
| 1167 | IGCM_card_WriteOption ${SUBMIT_DIR}/run.card Log LastExeSize "${NextExeSize}" |
|---|
| 1168 | |
|---|
| 1169 | if [ ${DRYRUN} -le 1 ] ; then |
|---|
| 1170 | tail -1500 ${Exe_Output} > ${Exe_Output}_tail.txt |
|---|
| 1171 | ExeCpuLog=$( gawk -f ${libIGCM}/libIGCM_sys/IGCM_add_out.awk ${Exe_Output}_tail.txt ) |
|---|
| 1172 | RET=$? |
|---|
| 1173 | if [ $RET -eq 0 ] ; then |
|---|
| 1174 | # ExeCpuLog variable contents 5 fields |
|---|
| 1175 | echo "${CumulPeriod} ${PeriodDateBegin} ${PeriodDateEnd} ${ExeCpuLog} ${ExeDate}" | \ |
|---|
| 1176 | gawk '{printf("# %11d | %15s | %15s | %19s | %19s | %15.5f | %15.5f | %15.5f | %s\n", \ |
|---|
| 1177 | $1,$2,$3,$4,$5,$6,$7,$8,$9)}' >> ${SUBMIT_DIR}/run.card |
|---|
| 1178 | fi |
|---|
| 1179 | FileToBeDeleted[${#FileToBeDeleted[@]}]=${Exe_Output}_tail.txt |
|---|
| 1180 | fi |
|---|
| 1181 | |
|---|
| 1182 | fi |
|---|
| 1183 | |
|---|
| 1184 | #==================================# |
|---|
| 1185 | # Save Job output # |
|---|
| 1186 | #==================================# |
|---|
| 1187 | if [ X${Pack} = Xtrue ] ; then |
|---|
| 1188 | IGCM_sys_PutBuffer_Out ${Exe_Output} ${R_BUF_KSH}/${PREFIX}_${Exe_Output} |
|---|
| 1189 | else |
|---|
| 1190 | IGCM_sys_Put_Out ${Exe_Output} ${R_OUT_KSH}/${PREFIX}_${Exe_Output} |
|---|
| 1191 | fi |
|---|
| 1192 | FileToBeDeleted[${#FileToBeDeleted[@]}]=${Exe_Output} |
|---|
| 1193 | |
|---|
| 1194 | # All was right ? no ? then we stop. |
|---|
| 1195 | IGCM_debug_Verif_Exit |
|---|
| 1196 | |
|---|
| 1197 | # If all was OK, we can delete all files not necessary for next Job |
|---|
| 1198 | echo |
|---|
| 1199 | IGCM_debug_Print 1 "Files that will be deleted before next period-run : " |
|---|
| 1200 | |
|---|
| 1201 | if [ ${DRYRUN} -le 2 ] ; then |
|---|
| 1202 | for f in ${FileToBeDeleted[@]} ; do [ -f ${f} ] && ls -la $f ; [ -f ${f} ] && rm -f $f ; done |
|---|
| 1203 | else |
|---|
| 1204 | echo ${FileToBeDeleted[@]} |
|---|
| 1205 | fi |
|---|
| 1206 | |
|---|
| 1207 | # Send some accounting element to the user if CumulPeriod=3 |
|---|
| 1208 | if [ ${CumulPeriod} -eq 3 ] ; then |
|---|
| 1209 | echo |
|---|
| 1210 | IGCM_debug_Print 1 "Send email containing some accounting information : " |
|---|
| 1211 | |
|---|
| 1212 | RealCpuTime=$( echo ${ExeCpuLog} | gawk '{print $3}' ) |
|---|
| 1213 | |
|---|
| 1214 | consumeHoursPerPeriod=$( echo "scale=6;${RealCpuTime}*${coreNumber}/3600" | bc ) |
|---|
| 1215 | |
|---|
| 1216 | consumeHoursPerWholeSimulation=$( echo "scale=6;${consumeHoursPerPeriod}/${PeriodLengthInDays}*${ExperienceLengthInDays}" | bc ) |
|---|
| 1217 | |
|---|
| 1218 | recommendedPeriodNb=$( echo "scale=6;${jobWarningDelay}/3600/${consumeHoursPerPeriod}*${coreNumber}" | bc ) |
|---|
| 1219 | |
|---|
| 1220 | IGCM_sys_SendMail Accounting |
|---|
| 1221 | fi |
|---|
| 1222 | |
|---|
| 1223 | #=================================================# |
|---|
| 1224 | # Modification of libIGCM behaviour # |
|---|
| 1225 | #=================================================# |
|---|
| 1226 | |
|---|
| 1227 | # To use this function, one must copy libIGCM.card from ${libIGCM} directory |
|---|
| 1228 | # and put it in ${SUBMIT_DIR} directory. After modifications of ${SUBMIT_DIR}/libIGCM.card, |
|---|
| 1229 | # variables define inside [UserChanges] will be modified for next Period of libIGCM main loop. |
|---|
| 1230 | if [ -f ${SUBMIT_DIR}/libIGCM.card ] ; then |
|---|
| 1231 | echo |
|---|
| 1232 | echo "########################################################################" |
|---|
| 1233 | echo "!!! Modification of libIGCM behaviour !!!" |
|---|
| 1234 | echo |
|---|
| 1235 | |
|---|
| 1236 | IGCM_debug_Print 1 "DefineArrayFromOption : libIGCM_UserChanges in libIGCM.card" |
|---|
| 1237 | IGCM_card_DefineArrayFromSection ${SUBMIT_DIR}/libIGCM.card UserChanges |
|---|
| 1238 | IGCM_debug_Print 2 "libIGCM_UserChanges" ${libIGCM_UserChanges[*]} |
|---|
| 1239 | |
|---|
| 1240 | # Special treatments for libIGCM internals |
|---|
| 1241 | for option in ${libIGCM_UserChanges[*]} ; do |
|---|
| 1242 | IGCM_card_DefineVariableFromOption ${SUBMIT_DIR}/libIGCM.card UserChanges ${option} |
|---|
| 1243 | |
|---|
| 1244 | echo "We will change : ${option}." |
|---|
| 1245 | eval echo "Previous value : " \${${option}} |
|---|
| 1246 | eval echo "Change to : " \${libIGCM_UserChanges_${option}} |
|---|
| 1247 | |
|---|
| 1248 | eval ${option}=\${libIGCM_UserChanges_${option}} |
|---|
| 1249 | |
|---|
| 1250 | case ${option} in |
|---|
| 1251 | config_UserChoices_DateEnd) |
|---|
| 1252 | IGCM_debug_PrintVariables 1 config_UserChoices_DateEnd |
|---|
| 1253 | DateEnd=$( IGCM_date_ConvertFormatToGregorian ${config_UserChoices_DateEnd} ) |
|---|
| 1254 | |
|---|
| 1255 | # Period Length In Days between DateBegin and DateEnd |
|---|
| 1256 | (( ExperienceLengthInDays=$( IGCM_date_DaysBetweenGregorianDate ${DateEnd} ${DateBegin} ) + 1 )) |
|---|
| 1257 | if [ ${ExperienceLengthInDays} -lt 0 ] ; then |
|---|
| 1258 | IGCM_debug_Print 1 "Problem with dates in libIGCM.card : ${DateEnd} < ${DateBegin} ! You must check that." |
|---|
| 1259 | IGCM_debug_Exit "IGCM_PeriodEnd have wrong dates." |
|---|
| 1260 | IGCM_debug_Verif_Exit |
|---|
| 1261 | fi |
|---|
| 1262 | ;; |
|---|
| 1263 | config_UserChoices_PeriodLength) |
|---|
| 1264 | IGCM_debug_Print 1 "Change config_UserChoices_PeriodLength=${config_UserChoices_PeriodLength}" |
|---|
| 1265 | ;; |
|---|
| 1266 | PeriodNb) |
|---|
| 1267 | IGCM_debug_Print 1 "Loop in main Job with ${PeriodNb} period(s)" |
|---|
| 1268 | ;; |
|---|
| 1269 | config_Post_RebuildFrequency) |
|---|
| 1270 | IGCM_debug_Print 1 "Change config_Post_RebuildFrequency=${config_Post_RebuildFrequency} : IGCM_post_Configure" |
|---|
| 1271 | IGCM_post_Configure |
|---|
| 1272 | ;; |
|---|
| 1273 | config_Post_TimeSeriesFrequency) |
|---|
| 1274 | IGCM_debug_Print 1 "Change config_Post_TimeSeriesFrequency = ${config_Post_TimeSeriesFrequency} : IGCM_post_Configure" |
|---|
| 1275 | IGCM_post_Configure |
|---|
| 1276 | ;; |
|---|
| 1277 | config_Post_SeasonalFrequency) |
|---|
| 1278 | IGCM_debug_Print 1 "Change config_Post_SeasonalFrequency = ${config_Post_SeasonalFrequency} : IGCM_post_Configure" |
|---|
| 1279 | IGCM_post_Configure |
|---|
| 1280 | ;; |
|---|
| 1281 | esac |
|---|
| 1282 | done |
|---|
| 1283 | |
|---|
| 1284 | echo |
|---|
| 1285 | echo "########################################################################" |
|---|
| 1286 | echo |
|---|
| 1287 | fi |
|---|
| 1288 | |
|---|
| 1289 | #=================================================# |
|---|
| 1290 | # Determine next computed period # |
|---|
| 1291 | #=================================================# |
|---|
| 1292 | |
|---|
| 1293 | PeriodDateBegin=$( IGCM_date_AddDaysToGregorianDate ${PeriodDateEnd} 1 ) |
|---|
| 1294 | IGCM_date_GetYearMonthDay $PeriodDateBegin year month day |
|---|
| 1295 | year_m1=$(( year - 1 )) |
|---|
| 1296 | year_p1=$(( year + 1 )) |
|---|
| 1297 | IGCM_config_DaysInPeriodLength |
|---|
| 1298 | PeriodDateEnd=$( IGCM_date_AddDaysToGregorianDate ${PeriodDateBegin} $(( ${PeriodLengthInDays} - 1 )) ) |
|---|
| 1299 | |
|---|
| 1300 | # Debug Print : |
|---|
| 1301 | echo |
|---|
| 1302 | IGCM_debug_Print 1 "IGCM_config_PeriodEnd : Preparing Next Execution" |
|---|
| 1303 | IGCM_debug_Print 1 "PeriodDateBegin : ${PeriodDateBegin}" |
|---|
| 1304 | IGCM_debug_Print 1 "PeriodDateEnd : ${PeriodDateEnd}" |
|---|
| 1305 | IGCM_debug_Print 1 "PeriodLengthInDays : ${PeriodLengthInDays}" |
|---|
| 1306 | |
|---|
| 1307 | PeriodDateBegin=$( IGCM_date_ConvertFormatToHuman ${PeriodDateBegin} ) |
|---|
| 1308 | PeriodDateEnd=$( IGCM_date_ConvertFormatToHuman ${PeriodDateEnd} ) |
|---|
| 1309 | |
|---|
| 1310 | (( CumulPeriod = CumulPeriod + 1 )) |
|---|
| 1311 | |
|---|
| 1312 | # Debug Print : |
|---|
| 1313 | echo |
|---|
| 1314 | IGCM_debug_Print 3 "PeriodDateBegin Human : ${PeriodDateBegin}" |
|---|
| 1315 | IGCM_debug_Print 3 "PeriodDateEnd Human : ${PeriodDateEnd}" |
|---|
| 1316 | IGCM_debug_Print 3 "CumulPeriod : ${CumulPeriod}" |
|---|
| 1317 | |
|---|
| 1318 | #=================================================# |
|---|
| 1319 | # Write updated run.card # |
|---|
| 1320 | #=================================================# |
|---|
| 1321 | |
|---|
| 1322 | IGCM_card_WriteOption ${SUBMIT_DIR}/run.card Configuration PeriodDateBegin ${PeriodDateBegin} |
|---|
| 1323 | IGCM_card_WriteOption ${SUBMIT_DIR}/run.card Configuration PeriodDateEnd ${PeriodDateEnd} |
|---|
| 1324 | IGCM_card_WriteOption ${SUBMIT_DIR}/run.card Configuration CumulPeriod ${CumulPeriod} |
|---|
| 1325 | |
|---|
| 1326 | if ( ${FirstInitialize} ) ; then |
|---|
| 1327 | # It's no more the first time |
|---|
| 1328 | FirstInitialize=false |
|---|
| 1329 | fi |
|---|
| 1330 | |
|---|
| 1331 | IGCM_debug_PopStack "IGCM_config_PeriodEnd" |
|---|
| 1332 | } |
|---|
| 1333 | |
|---|
| 1334 | #=================================== |
|---|
| 1335 | function IGCM_config_Finalize |
|---|
| 1336 | { |
|---|
| 1337 | IGCM_debug_PushStack "IGCM_config_Finalize" |
|---|
| 1338 | |
|---|
| 1339 | echo |
|---|
| 1340 | IGCM_debug_Print 1 "IGCM_config_Finalize" |
|---|
| 1341 | echo |
|---|
| 1342 | |
|---|
| 1343 | # Test state of run in run.card. Will schedule an exit if another process setted it to "Fatal" |
|---|
| 1344 | IGCM_config_StateCheck |
|---|
| 1345 | |
|---|
| 1346 | # And EXIT if not OK |
|---|
| 1347 | IGCM_debug_Verif_Exit |
|---|
| 1348 | |
|---|
| 1349 | if [ ${SimulationLengthInDays} -ge ${ExperienceLengthInDays} ] ; then |
|---|
| 1350 | #==========================# |
|---|
| 1351 | # End of entire simulation # |
|---|
| 1352 | #==========================# |
|---|
| 1353 | simulationIsOver=true |
|---|
| 1354 | |
|---|
| 1355 | # Mail notification |
|---|
| 1356 | IGCM_sys_SendMail |
|---|
| 1357 | # |
|---|
| 1358 | IGCM_card_WriteOption ${SUBMIT_DIR}/run.card Configuration PeriodState "Completed" |
|---|
| 1359 | # |
|---|
| 1360 | IGCM_debug_Print 1 "Normal End of computation." |
|---|
| 1361 | |
|---|
| 1362 | else |
|---|
| 1363 | #=================# |
|---|
| 1364 | # Submit next job # |
|---|
| 1365 | #=================# |
|---|
| 1366 | simulationIsOver=false |
|---|
| 1367 | |
|---|
| 1368 | IGCM_card_WriteOption ${SUBMIT_DIR}/run.card Configuration PeriodState "OnQueue" |
|---|
| 1369 | |
|---|
| 1370 | # Name of next Ksh Script output : |
|---|
| 1371 | Script_Output=${Script_Output_Prefix}_${config_UserChoices_JobName}.$( printf "%06d" ${CumulPeriod} ) |
|---|
| 1372 | |
|---|
| 1373 | IGCM_debug_Print 1 "Submit next job" |
|---|
| 1374 | # SUBMIT NEXT JOB from SUBMIT_DIR and come back in RUN_DIR |
|---|
| 1375 | IGCM_sys_Cd ${SUBMIT_DIR} |
|---|
| 1376 | # Keep only the 5 latest ${Script_Output_Prefix}_${config_UserChoices_JobName} |
|---|
| 1377 | ScriptTot=$( ls ${Script_Output_Prefix}_${config_UserChoices_JobName}.?????? 2>/dev/null | wc -l ) |
|---|
| 1378 | [ ${ScriptTot} -gt 5 ] && rm -f $( ls ${Script_Output_Prefix}_${config_UserChoices_JobName}.?????? | head -$(( ${ScriptTot} - 5 )) ) |
|---|
| 1379 | # Submit next job and come back |
|---|
| 1380 | IGCM_sys_Qsub ${SUBMIT_DIR}/Job_${config_UserChoices_JobName} |
|---|
| 1381 | IGCM_sys_Cd - |
|---|
| 1382 | fi |
|---|
| 1383 | |
|---|
| 1384 | # Clean ${RUN_DIR}=${RUN_DIR_PATH}/${config_UserChoices_JobName}.${$} |
|---|
| 1385 | # Only for production run (No clean up in DEV or DEB mode) |
|---|
| 1386 | # and command sent from .. directory. |
|---|
| 1387 | IGCM_sys_Cd .. |
|---|
| 1388 | [ X${JobType} = XRUN ] && IGCM_sys_RmRunDir -rf ${RUN_DIR_PATH} |
|---|
| 1389 | |
|---|
| 1390 | # Inform the rabbitMQ queue |
|---|
| 1391 | IGCM_debug_BigBro_Finalize |
|---|
| 1392 | |
|---|
| 1393 | IGCM_debug_PopStack "IGCM_config_Finalize" |
|---|
| 1394 | } |
|---|
| 1395 | |
|---|
| 1396 | #=================================== |
|---|
