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source: trunk/libIGCM/libIGCM_config/libIGCM_config.ksh @ 466

Last change on this file since 466 was 466, checked in by mafoipsl, 13 years ago
some print added to easily find creation or existence of run.card
Property licence set to The following licence information concerns ONLY the libIGCM tools ================================================================== Copyright © Centre National de la Recherche Scientifique CNRS Commissariat à l'Énergie Atomique CEA libIGCM : Library for Portable Models Computation of IGCM Group. IGCM Group is the french IPSL Global Climate Model Group. This library is a set of shell scripts and functions whose purpose is the management of the initialization, the launch, the transfer of output files, the post-processing and the monitoring of datas produce by any numerical program on any plateforme. This software is governed by the CeCILL license under French law and abiding by the rules of distribution of free software. You can use, modify and/ or redistribute the software under the terms of the CeCILL license as circulated by CEA, CNRS and INRIA at the following URL "http://www.cecill.info". As a counterpart to the access to the source code and rights to copy, modify and redistribute granted by the license, users are provided only with a limited warranty and the software's author, the holder of the economic rights, and the successive licensors have only limited liability. In this respect, the user's attention is drawn to the risks associated with loading, using, modifying and/or developing or reproducing the software by the user in light of its specific status of free software, that may mean that it is complicated to manipulate, and that also therefore means that it is reserved for developers and experienced professionals having in-depth computer knowledge. Users are therefore encouraged to load and test the software's suitability as regards their requirements in conditions enabling the security of their systems and/or data to be ensured and, more generally, to use and operate it in the same conditions as regards security. The fact that you are presently reading this means that you have had knowledge of the CeCILL license and that you accept its terms. Property svn:keywords set to `Revision Author Date`
File size: 32.7 KB

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1	#!/bin/ksh
2
3	#**************************************************************
4	# Author: Sebastien Denvil, Martial Mancip
5	# Contact: Sebastien.Denvil__at__ipsl.jussieu.fr Martial.Mancip__at__ipsl.jussieu.fr
6	# $Revision:: $ Revision of last commit
7	# $Author:: $ Author of last commit
8	# $Date:: $ Date of last commit
9	# IPSL (2006)
10	# This software is governed by the CeCILL licence see libIGCM/libIGCM_CeCILL.LIC
11	#
12	#**************************************************************
13
14	#===================================
15	function IGCM_config_Initialize
16	{
17	IGCM_debug_PushStack "IGCM_config_Initialize"
18
19	# Debug Print :
20	echo
21	IGCM_debug_Print 1 "IGCM_config_Initialize"
22
23	if [ ! -r ${SUBMIT_DIR}/run.card ]; then
24	#================================================#
25	# The file run.card doesn't exist #
26	#================================================#
27	FirstInitialize=true
28	#copy initial run.card
29	IGCM_sys_Cp ${SUBMIT_DIR}/run.card.init ${SUBMIT_DIR}/run.card
30	IGCM_debug_Print 2 "run.card copied from run.card.init"
31	else
32	FirstInitialize=false
33	IGCM_debug_Print 2 "run.card exists"
34	fi
35
36	# Test modipsl tree existence.
37	IGCM_sys_TestDir ${MODIPSL}
38	[ $? != 0 ] && IGCM_debug_Exit "IGCM_sys_TestDir"
39	IGCM_sys_TestDir ${libIGCM}
40	[ $? != 0 ] && IGCM_debug_Exit "IGCM_sys_TestDir"
41	IGCM_sys_TestDir ${R_EXE}
42	[ $? != 0 ] && IGCM_debug_Exit "IGCM_sys_TestDir"
43	IGCM_sys_TestDir ${SUBMIT_DIR}
44	[ $? != 0 ] && IGCM_debug_Exit "IGCM_sys_TestDir"
45
46	if ( $DEBUG_debug ) ; then
47	echo "Keep trace of inital SUBMIT_DIR : "
48	ls -lta ${SUBMIT_DIR}
49	fi
50
51	#==================================
52
53	typeset option auxprint CompatibilityTag
54	# Read libIGCM compatibility version in config.card
55	IGCM_card_DefineVariableFromOption ${SUBMIT_DIR}/config.card Compatibility libIGCM
56	eval CompatibilityTag=${config_Compatibility_libIGCM} > /dev/null 2>&1
57
58	if [ ! "${CompatibilityTag}" = "${libIGCM_CurrentTag}" ] ; then
59	IGCM_debug_Exit "config.card is not compatible with libIGCM version ${libIGCM_CurrentTag} see libIGCM FAQ http://wiki.ipsl.jussieu.fr/wiki_ipsl/IGCMG/libIGCM/DocUtilisateur/FAQ ."
60	fi
61
62	#==================================
63	IGCM_card_DefineArrayFromSection ${SUBMIT_DIR}/config.card UserChoices
64
65	for option in ${config_UserChoices[*]} ; do
66	IGCM_card_DefineVariableFromOption ${SUBMIT_DIR}/config.card UserChoices ${option}
67	done
68	echo
69	IGCM_debug_Print 1 "DefineArrayFromOption : config_UserChoices"
70	# Name Space of this experience
71	if [ X${config_UserChoices_SpaceName} != X ] ; then
72	IGCM_debug_PrintVariables 3 config_UserChoices_SpaceName
73	fi
74	# Expericence class of the run
75	if [ X${config_UserChoices_ExperimentName} != X ] ; then
76	IGCM_debug_PrintVariables 3 config_UserChoices_ExperimentName
77	fi
78	IGCM_debug_PrintVariables 3 config_UserChoices_JobName
79	if [ 3 -le ${Verbosity} ] ; then
80	echo "--------------Debug3-->" "config_UserChoices_LongName="
81	echo "--------------Debug3-->" \"${config_UserChoices_LongName}\"
82	fi
83	IGCM_debug_PrintVariables 3 config_UserChoices_TagName
84	IGCM_debug_PrintVariables 3 config_UserChoices_CalendarType
85	IGCM_debug_PrintVariables 3 config_UserChoices_DateBegin
86	IGCM_debug_PrintVariables 3 config_UserChoices_DateEnd
87	IGCM_debug_PrintVariables 3 config_UserChoices_PeriodLength
88
89	#==================================
90
91	IGCM_card_DefineArrayFromSection ${SUBMIT_DIR}/config.card ListOfComponents
92
93	echo
94	IGCM_debug_Print 1 "DefineArrayFromSection : ListOfComponents"
95	IGCM_debug_Print 3 ${config_ListOfComponents[*]}
96
97	NbComponents=${#config_ListOfComponents[*]}
98
99	#==================================
100	# Define principal executable
101
102	IGCM_card_DefineArrayFromSection ${SUBMIT_DIR}/config.card Executable
103	IGCM_card_DefineVariableFromOption ${SUBMIT_DIR}/config.card Executable Name
104
105	#==================================
106	# Define Outputs Name
107	IGCM_debug_Print 2 "Define Script_Output_Prefix and Exe_Output"
108	eval Script_Output_Prefix=${config_UserChoices_Script_Output_Prefix:='Script_Output'}
109	IGCM_debug_Print 3 "Script_Output_Prefix = ${Script_Output_Prefix}"
110	eval Exe_Output=out_${config_Executable_Name}
111	IGCM_debug_Print 3 "Exe_Output = ${Exe_Output}"
112
113	#==================================
114
115	#===================================================================#
116	# Prepare variables available for ${COMP}.card and ${COMP}.driver #
117	# But available to any son functions #
118	#===================================================================#
119
120	# Convert yyyy-mm-dd date to gregorian yyyymmdd
121	DateBegin=$( IGCM_date_ConvertFormatToGregorian ${config_UserChoices_DateBegin} )
122	DateEnd=$( IGCM_date_ConvertFormatToGregorian ${config_UserChoices_DateEnd} )
123
124	# Period Length In Days between DateBegin and DateEnd
125	(( ExperienceLengthInDays=$( IGCM_date_DaysBetweenGregorianDate ${DateEnd} ${DateBegin} ) + 1 ))
126	if [ ${ExperienceLengthInDays} -lt 0 ] ; then
127	IGCM_debug_Print 1 "Problem with dates in config.card : ${DateEnd} < ${DateBegin} ! You must check that."
128	IGCM_debug_Exit "IGCM_config_Initialize" " Wrong Dates."
129	IGCM_debug_Verif_Exit
130	fi
131
132	# Day and Year of Initial State (Given in julian format)
133	InitDay=$(( $( IGCM_date_ConvertGregorianDateToJulian $DateBegin ) % 1000 ))
134	InitYear=$(( $( IGCM_date_ConvertGregorianDateToJulian $DateBegin ) / 1000 ))
135
136	#==================================
137	# Restarts : Gerneral rule or local for each component ?
138	IGCM_card_DefineArrayFromSection ${SUBMIT_DIR}/config.card Restarts
139
140	echo
141	IGCM_debug_Print 1 "DefineArrayFromOption : config_Restarts"
142
143	for option in ${config_Restarts[*]} ; do
144	IGCM_card_DefineVariableFromOption ${SUBMIT_DIR}/config.card Restarts ${option}
145	eval auxprint=\${config_Restarts_${option}}
146	IGCM_debug_Print 3 "${option} : ${auxprint}"
147	done
148
149	#================================================================#
150	# Test and Prepare directories #
151	#================================================================#
152
153	# ==> 4 kinds of input files :
154	# 1) R_INIT : Initial State Files (Etat0, carteveg)
155	# 2) R_BC : Boundary Conditions (Forcages, lai)
156	# 3) Parameters files (allready define through ${SUBMIT_DIR})
157	# 4) Restarts files (allready define in IGCM_config_Initialize)
158
159	# Here we offer the possibility to redefine R_INIT, R_BC
160	# and PeriodNb through config.card
161	R_INIT=${config_UserChoices_R_INIT:=${R_IN}/INIT}
162	IGCM_debug_Print 2 "(Re)Define R_INIT, R_BC and PeriodNb"
163	IGCM_debug_Print 3 "R_INIT=${R_INIT}"
164	R_BC=${config_UserChoices_R_BC:=${R_IN}/BC}
165	IGCM_debug_Print 3 "R_BC=${R_BC}"
166	PeriodNb=${config_UserChoices_PeriodNb:=${PeriodNb}}
167	IGCM_debug_Print 3 "Loop in main Job with ${PeriodNb} period(s)"
168
169	# Test Archive input/output.
170	IGCM_sys_TestDirArchive ${ARCHIVE}
171	[ $? != 0 ] && IGCM_debug_Exit "IGCM_sys_TestDirArchive"
172	IGCM_sys_TestDirArchive ${R_IN}
173	[ $? != 0 ] && IGCM_debug_Exit "IGCM_sys_TestDirArchive"
174
175	#====================================================
176	#R_SAVE : Job output directory
177	if ( [ ! X${config_UserChoices_SpaceName} = X ] && [ ! X${config_UserChoices_ExperimentName} = X ] ) ; then
178	FreeName=$( echo ${config_UserChoices_JobName} \| sed 's/.*_//' )
179	R_SAVE=${R_OUT}/${config_UserChoices_TagName}/${config_UserChoices_SpaceName}/${config_UserChoices_ExperimentName}/${FreeName}
180	R_DODS=${config_UserChoices_TagName}/${config_UserChoices_SpaceName}/${config_UserChoices_ExperimentName}/${FreeName}
181	else
182	R_SAVE=${R_OUT}/${config_UserChoices_TagName}/${config_UserChoices_JobName}
183	R_DODS=${config_UserChoices_TagName}/${config_UserChoices_JobName}
184	fi
185
186	if ( ${FirstInitialize} ) ; then
187	IGCM_sys_MkdirArchive ${R_SAVE}
188	else
189	IGCM_sys_TestDirArchive ${R_SAVE}
190	[ $? != 0 ] && IGCM_debug_Exit "IGCM_sys_TestDirArchive"
191	#Test state of run in run.card
192	IGCM_card_DefineVariableFromOption ${SUBMIT_DIR}/run.card Configuration PeriodState
193
194	if ( [ ${run_Configuration_PeriodState} != "Start" ] && [ ${run_Configuration_PeriodState} != "Running" ] && [ ${run_Configuration_PeriodState} != "OnQueue" ] && [ ${run_Configuration_PeriodState} != "Continue" ] ) ; then
195	echo
196	IGCM_debug_Print 1 "!! Error in run.card with PeriodState : " ${run_Configuration_PeriodState} "!!"
197	IGCM_debug_Print 1 "Try running ${libIGCM}/clean_month.job to fix this"
198	IGCM_debug_Exit
199	IGCM_debug_Verif_Exit
200	fi
201	fi
202
203	#==================================
204	# Post :
205	IGCM_card_DefineArrayFromSection ${SUBMIT_DIR}/config.card Post
206
207	echo
208	IGCM_debug_Print 1 "DefineArrayFromOption : config_Post"
209
210	for option in ${config_Post[*]} ; do
211	IGCM_card_DefineVariableFromOption ${SUBMIT_DIR}/config.card Post ${option}
212	eval auxprint=\${config_Post_${option}}
213	IGCM_debug_Print 3 "${option} : ${auxprint}"
214	done
215
216	#====================================================
217	# Define REBUILD_DIR : where we store files needing rebuild process
218	if [ X${config_Post_RebuildFromArchive} = Xtrue ] ; then
219	REBUILD_DIR=${R_SAVE}/TMP
220	IGCM_sys_MkdirArchive ${REBUILD_DIR}
221	else
222	REBUILD_DIR=${BIG_DIR}/${config_UserChoices_TagName}/${config_UserChoices_JobName}
223	IGCM_sys_MkdirWork ${REBUILD_DIR}
224	fi
225
226	#====================================================
227	# Experience type : DEB(ug), DEV(elopment), RUN
228	if [ X${JobType} != XRUN ] ; then
229	echo
230	echo "===================================================="
231	echo "libIGCM JOB is NOT in RUN type mode."
232	echo "!! OUTPUT files will NOT be PROTECTED !!"
233	echo "Be carefull : you can ERASE the result of this job !"
234
235	case ${JobType} in
236	DEB)
237	echo "DEBUG mode : activation of 'set -vx' mode."
238	echo "DEBUG mode : no protection for output files."
239	echo "DEBUG mode : if active force asynchronous rebuild frequency to PeriodLength frequency."
240	;;
241	DEV)
242	echo "DEVelopment mode : no protection for output files."
243	echo "DEVelopment mode : if active force asynchronous rebuild frequency to PeriodLength frequency."
244	;;
245	esac
246
247	if ( [ X${config_Post_RebuildFrequency} != XNONE ] && [ ${DRYRUN} -eq 0 ] ) ; then
248	if [ X${config_Post_RebuildFrequency} != X${config_UserChoices_PeriodLength} ] ; then
249	echo "------------"
250	echo "WARNING : Job is NOT in RUN mode then we will force REBUILD Frequency"
251	echo " to PeriodLength : ${config_UserChoices_PeriodLength}"
252	echo "------------"
253	config_Post_RebuildFrequency=${config_UserChoices_PeriodLength}
254	fi
255	fi
256	echo "===================================================="
257	echo
258	fi
259
260	#====================================================
261	#R_OUT_KSH : Storage place for job output
262	#R_OUT_EXE : Storage place for binary used during simulation
263	R_OUT_KSH=${R_SAVE}/Out
264	R_OUT_EXE=${R_SAVE}/Exe
265
266	IGCM_debug_PopStack "IGCM_config_Initialize"
267	}
268
269	#===================================
270	function IGCM_config_Analyse_PeriodLength
271	{
272	IGCM_debug_PushStack "IGCM_config_Analyse_PeriodLength"
273
274	typeset i
275
276	# Determine number of day(s) in PeriodLength :
277	case ${config_UserChoices_PeriodLength} in
278	Y\|y)
279	PeriodLengthInYears=$( echo ${config_UserChoices_PeriodLength} \| sed -e 's/[yY]//' )
280	IGCM_debug_Print 2 "Number of years for PeriodLength : ${PeriodLengthInYears}"
281	PeriodLengthInDays=0
282	i=0
283	until [ $i -ge $PeriodLengthInYears ] ; do
284	(( PeriodLengthInDays = PeriodLengthInDays + $( IGCM_date_DaysInYear $(( year + i )) ) ))
285	(( i=i+1 ))
286	done
287	;;
288	M\|m)
289	PeriodLengthInMonths=$( echo ${config_UserChoices_PeriodLength} \| sed -e 's/[mM]//' )
290	IGCM_debug_Print 2 "Number of months for PeriodLength : ${PeriodLengthInMonths}"
291	PeriodLengthInDays=0
292	i=0
293	until [ $i -ge $PeriodLengthInMonths ] ; do
294	if [ $(( month + i )) -lt 13 ] ; then
295	(( PeriodLengthInDays = PeriodLengthInDays + $( IGCM_date_DaysInMonth $year $(( month + i )) ) ))
296	else
297	(( PeriodLengthInDays = PeriodLengthInDays + $( IGCM_date_DaysInMonth $year $(( month + i - 12 )) ) ))
298	fi
299	(( i=i+1 ))
300	done
301	;;
302	D\|d)
303	PeriodLengthInMonths=0
304	PeriodLengthInDays=$( echo ${config_UserChoices_PeriodLength} \| sed -e 's/[dD]//' );;
305	*)
306	IGCM_debug_Exit "IGCM_config_Analyse_PeriodLength " ${config_UserChoices_PeriodLength} " invalid period length : choose in Y, M, *D."
307	IGCM_debug_Verif_Exit ;;
308	esac
309
310	IGCM_debug_PopStack "IGCM_config_Analyse_PeriodLength"
311	}
312
313	#===================================
314	function IGCM_config_Check
315	{
316	IGCM_debug_PushStack "IGCM_config_Check"
317
318	# If one of the following modulo is not zero :
319	# we will issue an error then explain and exit in
320	# AA_job IGCM_debug_Verif_Exit call before binary submission
321
322	echo
323	IGCM_debug_Print 1 "IGCM_config_Check"
324	echo
325
326	typeset i
327
328	if ( [ ! X${config_Post_RebuildFrequency} = X${NULL_STR} ] \|\| [ ! X${config_Post_RebuildFrequency} = XNONE ] ) ; then
329	AsynchronousRebuild=true
330	IGCM_debug_Print 1 "Asynchronous rebuild has been activated."
331	echo
332	# modulo (RebuildFrequency and PeriodLength/TimeSeriesFrequency/SeasonalFrequency) must be zero
333	IGCM_debug_Print 1 "Check coherence between RebuildFrequency and PeriodLength"
334	IGCM_post_CheckModuloFrequency config_Post_RebuildFrequency config_UserChoices_PeriodLength
335	IGCM_debug_Print 1 "Check coherence between TimeSeriesFrequency and RebuildFrequency"
336	IGCM_post_CheckModuloFrequency config_Post_TimeSeriesFrequency config_Post_RebuildFrequency
337	IGCM_debug_Print 1 "Check coherence between SeasonalFrequency and RebuildFrequency"
338	IGCM_post_CheckModuloFrequency config_Post_SeasonalFrequency config_Post_RebuildFrequency
339	else
340	AsynchronousRebuild=false
341	IGCM_debug_Print 1 "Asynchronous rebuild has not been activated"
342	IGCM_debug_Print 1 "Proceed with standard post-treatment pathway"
343	echo
344	#modulo (TimeSeriesFrequency/SeasonalFrequency and PeriodLenght) must be zero
345	IGCM_debug_Print 1 "Check coherence between TimeSeriesFrequency and PeriodLength"
346	IGCM_post_CheckModuloFrequency config_Post_TimeSeriesFrequency config_UserChoices_PeriodLength
347	IGCM_debug_Print 1 "Check coherence between SeasonalFrequency and PeriodLength"
348	IGCM_post_CheckModuloFrequency config_Post_SeasonalFrequency config_UserChoices_PeriodLength
349	fi
350
351	#modulo (TimeSeriesFrequency and all Chunck2D) must be zero
352	NbJob=${#CHUNCK2D_SIZE[@]}
353	i=0
354	until [ $i -ge $NbJob ]; do
355	value=${CHUNCK2D_SIZE[${i}]}
356	IGCM_debug_Print 1 "Check coherence between All Chunck2D frequency and TimeSeriesFrequency"
357	IGCM_post_CheckModuloFrequency value config_Post_TimeSeriesFrequency
358	case ${value} in
359	Y\|y) ;;
360	) IGCM_debug_Print 1 "All ChunckJob2D frequency must be expressed in year Y\|*y in comp.card"
361	IGCM_debug_Exit "This will stop the job" ;;
362	esac
363	(( i=i+1 ))
364	done
365
366	#modulo (TimeSeriesFrequency and all Chunck3D) must be zero
367	NbJob=${#CHUNCK3D_SIZE[@]}
368	i=0
369	until [ $i -ge $NbJob ]; do
370	value=${CHUNCK3D_SIZE[${i}]}
371	IGCM_debug_Print 1 "Check coherence between All Chunck3D frequency and TimeSeriesFrequency"
372	IGCM_post_CheckModuloFrequency value config_Post_TimeSeriesFrequency
373	case ${value} in
374	Y\|y) ;;
375	) IGCM_debug_Print 1 "All ChunckJob3D frequency must be expressed in year Y\|*y in comp.card"
376	IGCM_debug_Exit "This will stop the job" ;;
377	esac
378	(( i=i+1 ))
379	done
380
381	IGCM_debug_PopStack "IGCM_config_Check"
382	}
383
384	#===================================
385	function IGCM_config_PeriodStart
386	{
387	IGCM_debug_PushStack "IGCM_config_PeriodStart"
388
389	echo
390	IGCM_debug_Print 1 "IGCM_config_PeriodStart"
391	echo
392
393	if ( ${FirstInitialize} ) ; then
394	#================================================#
395	# Initialize date/period information #
396	#================================================#
397
398	IGCM_date_GetYearMonth $DateBegin year month
399	year_m1=$(( year - 1 ))
400	year_p1=$(( year + 1 ))
401	IGCM_config_Analyse_PeriodLength
402
403	eval PeriodDateBegin=${DateBegin} > /dev/null 2>&1
404	PeriodDateEnd=$( IGCM_date_AddDaysToGregorianDate ${DateBegin} $(( ${PeriodLengthInDays} - 1 )) )
405	eval CumulPeriod=1 > /dev/null 2>&1
406
407	#=================================================#
408	# Write updated run.card #
409	#=================================================#
410
411	#Correct run.card Configuration for this period
412	IGCM_card_WriteOption ${SUBMIT_DIR}/run.card Configuration PeriodDateBegin ${PeriodDateBegin}
413	IGCM_card_WriteOption ${SUBMIT_DIR}/run.card Configuration PeriodDateEnd ${PeriodDateEnd}
414	IGCM_card_WriteOption ${SUBMIT_DIR}/run.card Configuration CumulPeriod ${CumulPeriod}
415	IGCM_card_WriteOption ${SUBMIT_DIR}/run.card Configuration SubmitPath ${SUBMIT_DIR}
416
417	IGCM_card_WriteOption ${SUBMIT_DIR}/run.card Configuration PeriodState "Running"
418
419	else
420	#================================================#
421	# The file run.card allready exist #
422	#================================================#
423
424	#Test state of run in run.card
425	IGCM_card_DefineVariableFromOption ${SUBMIT_DIR}/run.card Configuration PeriodState
426	if ( [ ${run_Configuration_PeriodState} != "Running" ] && [ ${run_Configuration_PeriodState} != "OnQueue" ] && [ ${run_Configuration_PeriodState} != "Continue" ] ) ; then
427	echo
428	IGCM_debug_Print 1 "!! Error in run.card with PeriodState : " ${run_Configuration_PeriodState} "!!"
429	IGCM_debug_Print 1 "Try running ${libIGCM}/clean_month.job to fix this"
430	echo
431	IGCM_debug_Exit
432	IGCM_debug_Verif_Exit
433	fi
434
435	#===================================#
436	# Read updated run.card #
437	#===================================#
438
439	IGCM_card_DefineVariableFromOption ${SUBMIT_DIR}/run.card Configuration OldPrefix
440	IGCM_card_DefineVariableFromOption ${SUBMIT_DIR}/run.card Configuration PeriodDateBegin
441	IGCM_card_DefineVariableFromOption ${SUBMIT_DIR}/run.card Configuration PeriodDateEnd
442	IGCM_card_DefineVariableFromOption ${SUBMIT_DIR}/run.card Configuration CumulPeriod
443
444	PeriodDateBegin=$( IGCM_date_ConvertFormatToGregorian ${run_Configuration_PeriodDateBegin} )
445	PeriodDateEnd=$( IGCM_date_ConvertFormatToGregorian ${run_Configuration_PeriodDateEnd} )
446	eval CumulPeriod="${run_Configuration_CumulPeriod}" > /dev/null 2>&1
447
448	if [ ${Period} = 1 ]; then
449	# save last Job output
450	typeset LastPeriod iLastPeriod Last_Script_Output_Name
451	(( LastPeriod=CumulPeriod-PeriodNb ))
452	iLastPeriod=$( printf "%06d" ${LastPeriod} )
453	Last_Script_Output_Name="${Script_Output_Prefix}_${config_UserChoices_JobName}.${iLastPeriod}"
454	Last_run_card="run.card.${iLastPeriod}"
455	#eval ls -l ${SUBMIT_DIR}/${Last_Script_Output_Name}
456	#eval IGCM_sys_Put_Out ${SUBMIT_DIR}/${Last_Script_Output_Name} ${R_OUT_KSH}/${Last_Script_Output_Name} > /dev/null 2>&1
457	IGCM_debug_Print 2 "Try to save previous ksh job output"
458	IGCM_sys_Cd ${SUBMIT_DIR}/
459	IGCM_sys_Put_Out ${Last_Script_Output_Name} ${R_OUT_KSH}/${Last_Script_Output_Name}.$$ rw
460	IGCM_sys_Put_Out ${SUBMIT_DIR}/run.card ${R_OUT_KSH}/${Last_run_card}.$$ rw
461	IGCM_sys_Cd ${RUN_DIR}
462	else
463	unset FileToBeDeleted
464	fi
465
466	IGCM_date_GetYearMonth $PeriodDateBegin year month
467	year_m1=$(( year - 1 ))
468	year_p1=$(( year + 1 ))
469	IGCM_config_Analyse_PeriodLength
470
471	IGCM_card_WriteOption ${SUBMIT_DIR}/run.card Configuration PeriodState "Running"
472
473	fi
474	OldPrefix=${config_UserChoices_JobName}_${PeriodDateEnd}
475
476	#===================================================================#
477	# Prepare variables available for ${COMP}.card and ${COMP}.driver #
478	# But available to any son functions #
479	#===================================================================#
480
481	# Period Length In Days between DateBegin and DateCurrent (at end of period == PeriodDateEnd !)
482	(( SimulationLengthInDays = $( IGCM_date_DaysBetweenGregorianDate ${PeriodDateEnd} ${DateBegin} ) + 1 ))
483
484	# Debug Print :
485	IGCM_debug_Print 1 "IGCM_config_PeriodStart : Before Execution"
486	IGCM_debug_Print 1 "Year of simulation : ${year}"
487	IGCM_debug_Print 1 "Month of simulation : ${month}"
488	IGCM_debug_Print 1 "PeriodLengthInDays : ${PeriodLengthInDays}"
489	IGCM_debug_Print 1 "PeriodDateBegin : ${PeriodDateBegin}"
490	IGCM_debug_Print 1 "PeriodDateEnd : ${PeriodDateEnd}"
491	IGCM_debug_Print 1 "SimulationLengthInDays : ${SimulationLengthInDays}"
492	IGCM_debug_Print 1 "ExperienceLengthInDays : ${ExperienceLengthInDays}"
493
494	#================================================================#
495	# Prepare variables available for comp_finalyze #
496	#================================================================#
497
498	# Period for save files
499	eval DatesPeriod=${PeriodDateBegin}_${PeriodDateEnd} > /dev/null 2>&1
500
501	# Prefix for save files of this period
502	eval PREFIX=${config_UserChoices_JobName}_${DatesPeriod} > /dev/null 2>&1
503
504	# List of files that will be deleted in RUN_DIR after run
505	[ -f stack ] && FileToBeDeleted[0]="stack"
506
507	# Test if the same run as already been saved :
508	if [ X${JobType} = XRUN ] ; then
509	if [ ${DRYRUN} -le 0 ] ; then
510	if ( IGCM_sys_TestFileArchive ${R_OUT_KSH}/${PREFIX}_${Exe_Output} ) ; then
511	IGCM_debug_Exit "IGCM_config_PeriodStart" "You are currently RErunning an old job."
512	IGCM_debug_Print 1 "Because of readonly permissions, you can't RErun a job when saved files"
513	IGCM_debug_Print 1 " are still in the ARCHIVE directory. You must deleted those files, or "
514	IGCM_debug_Print 1 " the whole ${R_SAVE} tree. See clean_month.job in ${libIGCM} directory."
515	IGCM_debug_Print 1 " This exit has been initiated because at least ${R_OUT_KSH}/${PREFIX}_${Exe_Output} exists."
516	IGCM_debug_Verif_Exit
517	fi
518	fi
519	else
520	if ( IGCM_sys_TestFileArchive ${R_OUT_KSH}/${PREFIX}_${Exe_Output} ) ; then
521	IGCM_debug_Print 1 "IGCM_config_PeriodStart" "RErun an old job. Allowed in DEBUG or DEV mode."
522	fi
523	fi
524
525	IGCM_debug_PopStack "IGCM_config_PeriodStart"
526	}
527
528	#===================================
529	function IGCM_config_PeriodEnd
530	{
531	IGCM_debug_PushStack "IGCM_config_PeriodEnd"
532
533	echo
534	IGCM_debug_Print 1 "IGCM_config_PeriodEnd"
535	echo
536
537	#==================================#
538	# Save Job output #
539	#==================================#
540	IGCM_sys_Put_Out ${Exe_Output} ${R_OUT_KSH}/${PREFIX}_${Exe_Output}
541	eval FileToBeDeleted[${#FileToBeDeleted[@]}]="${Exe_Output}"
542	IGCM_sys_Put_Out ${SUBMIT_DIR}/run.card ${R_OUT_KSH}/run.card rw
543
544	IGCM_debug_Print 1 "Check components binary : size and creation date"
545
546	typeset LS_comp LS_bin ExeDate ExeCpuLog NextExeSize LastCompExeSize
547	typeset comp i
548	typeset ExeNameIn ExeNameOut
549
550	#==================================#
551	# Get last Exe Size #
552	#==================================#
553
554	(( i=0 ))
555	if ( ${FirstInitialize} ) ; then
556	run_Log_LastExeSize=""
557	for comp in ${config_ListOfComponents[*]} ; do
558	run_Log_LastExeSize[$i]=0
559	(( i=i+1 ))
560	done
561	else
562	IGCM_card_DefineArrayFromOption ${SUBMIT_DIR}/run.card Log LastExeSize
563	fi
564	#==================================#
565	# And Build ExeDate #
566	#==================================#
567
568	# ExeDate = ATM_Jun_12_09:34-SRF_Jun_12_09:34-OCE_Jun_12_09:34-ICE_Jun_12_09:34-CPL_Jun_12_09:33
569	# Would be nice to have next line but no way to format ls output (need to ls -l --time-style "+%Y-%m-%dT%H:%M")
570	# ExeDate = ATM_2009-06-12T09:34+SRF_2009-06-12T09:34+OCE_2009-06-12T09:34+ICE_2009-06-12T09:34+CPL_2009-06-12T09:34
571	ExeDate=""
572	NextExeSize="( "
573	(( i=0 ))
574
575	for comp in ${config_ListOfComponents[*]} ; do
576
577	IGCM_debug_Print 3 ${comp}
578
579	eval ExeNameIn=\${config_Executable_${comp}[0]}
580	eval ExeNameOut=\${config_Executable_${comp}[1]}
581	# Only if we really have an executable for the component :
582	if [ X${ExeNameIn} = X\"\" ] ; then
583	# If there is no exe file for this component
584	(( ExeSize=0 ))
585	else
586	eval LS_bin=${R_EXE}/${ExeNameIn}
587	IGCM_sys_FileSize ${LS_bin} ExeSize
588
589	set +A LS_comp -- $( LC_TIME=en_US ls -l ${LS_bin} )
590	if [ X${ExeDate} = X ] ; then
591	# First component exe date
592	ExeDate=${comp}_${LS_comp[5]}_${LS_comp[6]}
593	else
594	ExeDate=${ExeDate}-${comp}_${LS_comp[5]}_${LS_comp[6]}
595	fi
596	ExeDate=${ExeDate}_${LS_comp[7]}
597	fi
598
599	if [ ${i} -eq 0 ] ; then
600	# First component
601	NextExeSize="( "${ExeSize}
602	else
603	NextExeSize=${NextExeSize}", "${ExeSize}
604	fi
605	eval LastCompExeSize=${run_Log_LastExeSize[$i]}
606	(( i=i+1 ))
607
608	if [ ${ExeSize} -ne ${LastCompExeSize} ] ; then
609	if ( ${FirstInitialize} ) ; then
610	IGCM_debug_Print 1 "Save first ${ExeNameIn} in ${R_OUT_EXE} !"
611	else
612	IGCM_debug_Print 1 "${ExeNameIn} has changed in ${R_EXE} !"
613	IGCM_debug_Print 1 "Save latest ${ExeNameIn} in ${R_OUT_EXE} !"
614	eval FileToBeDeleted[${#FileToBeDeleted[@]}]=${ExeNameOut}
615	fi
616	eval IGCM_sys_Put_Out ${ExeNameOut} ${R_OUT_EXE}/${PREFIX}_${ExeNameIn} rw
617	fi
618	done
619
620	NextExeSize=${NextExeSize}" )"
621	IGCM_card_WriteOption ${SUBMIT_DIR}/run.card Log LastExeSize "${NextExeSize}"
622
623	if [ ${DRYRUN} -le 1 ] ; then
624	tail -1500 ${Exe_Output} > ${Exe_Output}_tail.txt
625	ExeCpuLog=$( gawk -f ${libIGCM}/libIGCM_sys/IGCM_add_out.awk ${Exe_Output}_tail.txt )
626	RET=$?
627	if [ $RET -eq 0 ] ; then
628	# ExeCpuLog variable contents 5 fields
629	echo "${CumulPeriod} ${PeriodDateBegin} ${PeriodDateEnd} ${ExeCpuLog} ${ExeDate}" \| \
630	gawk '{printf("# %11d \| %15s \| %15s \| %19s \| %19s \| %15.5f \| %15.5f \| %15.5f \| %s\n", \
631	$1,$2,$3,$4,$5,$6,$7,$8,$9)}' >> ${SUBMIT_DIR}/run.card
632	fi
633	eval FileToBeDeleted[${#FileToBeDeleted[@]}]="${Exe_Output}_tail.txt"
634	fi
635
636	# All was right ? no ? then we stop.
637	IGCM_debug_Verif_Exit
638
639	# If all was OK, we can delete all files not necessary for next Job
640	echo
641	IGCM_debug_Print 1 "Files that will be deleted before next period-run : "
642
643	if [ ${DRYRUN} -le 2 ] ; then
644	for f in ${FileToBeDeleted[@]} ; do [ -f ${f} ] && ls -la $f ; [ -f ${f} ] && rm -f $f ; done
645	else
646	echo ${FileToBeDeleted[@]}
647	fi
648
649	#=================================================#
650	# Modification of libIGCM behaviour #
651	#=================================================#
652
653	# To use this function, one must copy libIGCM.card from ${libIGCM} directory
654	# and put it in ${SUBMIT_DIR} directory. After modifications of ${SUBMIT_DIR}/libIGCM.card,
655	# variables define inside [UserChanges] will be modified for next Period of libIGCM main loop.
656	if [ -f ${SUBMIT_DIR}/libIGCM.card ] ; then
657	echo
658	echo "########################################################################"
659	echo "!!! Modification of libIGCM behaviour !!!"
660	echo
661
662	IGCM_debug_Print 1 "DefineArrayFromOption : libIGCM_UserChanges in libIGCM.card"
663	IGCM_card_DefineArrayFromSection ${SUBMIT_DIR}/libIGCM.card UserChanges
664	IGCM_debug_Print 2 "libIGCM_UserChanges" ${libIGCM_UserChanges[*]}
665
666	# Special treatments for libIGCM internals
667	for option in ${libIGCM_UserChanges[*]} ; do
668	IGCM_card_DefineVariableFromOption ${SUBMIT_DIR}/libIGCM.card UserChanges ${option}
669
670	echo "We will change : ${option}."
671	eval echo "Previous value : " \${${option}}
672	eval echo "Change to : " \${libIGCM_UserChanges_${option}}
673
674	eval ${option}=\${libIGCM_UserChanges_${option}}
675
676	case ${option} in
677	config_UserChoices_DateEnd)
678	IGCM_debug_PrintVariables 1 config_UserChoices_DateEnd
679	DateEnd=$( IGCM_date_ConvertFormatToGregorian ${config_UserChoices_DateEnd} )
680
681	# Period Length In Days between DateBegin and DateEnd
682	(( ExperienceLengthInDays=$( IGCM_date_DaysBetweenGregorianDate ${DateEnd} ${DateBegin} ) + 1 ))
683	if [ ${ExperienceLengthInDays} -lt 0 ] ; then
684	IGCM_debug_Print 1 "Problem with dates in libIGCM.card : ${DateEnd} < ${DateBegin} ! You must check that."
685	IGCM_debug_Exit "IGCM_PeriodEnd" " Wrong Dates."
686	IGCM_debug_Verif_Exit
687	fi
688	;;
689	config_UserChoices_PeriodLength)
690	IGCM_debug_Print 1 "Change config_UserChoices_PeriodLength=${config_UserChoices_PeriodLength}"
691	;;
692	PeriodNb)
693	IGCM_debug_Print 1 "Loop in main Job with ${PeriodNb} period(s)"
694	;;
695	config_Post_RebuildFrequency)
696	IGCM_debug_Print 1 "Change config_Post_RebuildFrequency=${config_Post_RebuildFrequency} : IGCM_post_Configure"
697	IGCM_post_Configure
698	;;
699	config_Post_TimeSeriesFrequency)
700	IGCM_debug_Print 1 "Change config_Post_TimeSeriesFrequency = ${config_Post_TimeSeriesFrequency} : IGCM_post_Initialize"
701	IGCM_post_Configure
702	;;
703	config_Post_SeasonalFrequency)
704	IGCM_debug_Print 1 "Change config_Post_SeasonalFrequency = ${config_Post_SeasonalFrequency} : IGCM_post_Initialize"
705	IGCM_post_Configure
706	;;
707	esac
708	done
709
710	echo
711	echo "########################################################################"
712	echo
713	fi
714
715	#=================================================#
716	# Determine next computed period #
717	#=================================================#
718
719	PeriodDateBegin=$( IGCM_date_AddDaysToGregorianDate ${PeriodDateEnd} 1 )
720	IGCM_date_GetYearMonth $PeriodDateBegin year month
721	year_m1=$(( year - 1 ))
722	year_p1=$(( year + 1 ))
723	IGCM_config_Analyse_PeriodLength
724	PeriodDateEnd=$( IGCM_date_AddDaysToGregorianDate ${PeriodDateBegin} $(( ${PeriodLengthInDays} - 1 )) )
725
726	# Debug Print :
727	echo
728	IGCM_debug_Print 1 "IGCM_config_PeriodEnd : Preparing Next Execution"
729	IGCM_debug_Print 1 "PeriodDateBegin : ${PeriodDateBegin}"
730	IGCM_debug_Print 1 "PeriodDateEnd : ${PeriodDateEnd}"
731	IGCM_debug_Print 1 "PeriodLengthInDays : ${PeriodLengthInDays}"
732
733	PeriodDateBegin=$( IGCM_date_ConvertFormatToHuman ${PeriodDateBegin} )
734	PeriodDateEnd=$( IGCM_date_ConvertFormatToHuman ${PeriodDateEnd} )
735
736	(( CumulPeriod = CumulPeriod + 1 ))
737
738	# Debug Print :
739	echo
740	IGCM_debug_Print 3 "PeriodDateBegin Human : ${PeriodDateBegin}"
741	IGCM_debug_Print 3 "PeriodDateEnd Human : ${PeriodDateEnd}"
742	IGCM_debug_Print 3 "CumulPeriod : ${CumulPeriod}"
743
744	#=================================================#
745	# Write updated run.card #
746	#=================================================#
747
748	IGCM_card_WriteOption ${SUBMIT_DIR}/run.card Configuration OldPrefix ${OldPrefix}
749	IGCM_card_WriteOption ${SUBMIT_DIR}/run.card Configuration PeriodDateBegin ${PeriodDateBegin}
750	IGCM_card_WriteOption ${SUBMIT_DIR}/run.card Configuration PeriodDateEnd ${PeriodDateEnd}
751	IGCM_card_WriteOption ${SUBMIT_DIR}/run.card Configuration CumulPeriod ${CumulPeriod}
752
753	if ( ${FirstInitialize} ) ; then
754	# It's no more the first time
755	FirstInitialize=false
756	fi
757
758	IGCM_debug_PopStack "IGCM_config_PeriodEnd"
759	}
760
761	#===================================
762	function IGCM_config_Finalize
763	{
764	IGCM_debug_PushStack "IGCM_config_Finalize"
765
766	echo
767	IGCM_debug_Print 1 "IGCM_config_Finalize"
768	echo
769
770	if [ ${SimulationLengthInDays} -ge ${ExperienceLengthInDays} ] ; then
771	#==========================#
772	# End of entire simulation #
773	#==========================#
774
775	# Mail notification
776	IGCM_sys_SendMail
777
778	#
779	IGCM_card_WriteOption ${SUBMIT_DIR}/run.card Configuration PeriodState "Completed"
780	IGCM_debug_Print 1 "Normal End of computation."
781	if ( $DEBUG_debug ) ; then
782	echo
783	IGCM_debug_Print 1 "Your files on ${R_OUT} :"
784	IGCM_sys_Tree ${R_SAVE}
785	fi
786	else
787	#=================#
788	# Submit next job #
789	#=================#
790
791	IGCM_card_WriteOption ${SUBMIT_DIR}/run.card Configuration PeriodState "OnQueue"
792
793	# Name of next Ksh Script output :
794	eval Script_Output="${Script_Output_Prefix}_${config_UserChoices_JobName}.$( printf "%06d" ${CumulPeriod} )"
795
796	IGCM_debug_Print 1 "Submit next job"
797	# SUBMIT NEXT JOB from SUBMIT_DIR and come back in RUN_DIR
798	IGCM_sys_Cd ${SUBMIT_DIR}
799	# Keep only the 5 latest ${Script_Output_Prefix}_${config_UserChoices_JobName}
800	ScriptTot=$( ls ${Script_Output_Prefix}_${config_UserChoices_JobName}.?????? 2>/dev/null \| wc -l )
801	[ ${ScriptTot} -gt 5 ] && rm -f $( ls ${Script_Output_Prefix}_${config_UserChoices_JobName}.?????? \| head -$(( ${ScriptTot} - 5 )) )
802	# Submit next job and come back
803	IGCM_sys_Qsub ${SUBMIT_DIR}/Job_${config_UserChoices_JobName}
804	IGCM_sys_Cd -
805	fi
806
807	# Supress Non Deleted Boundary files
808	if [ ${DRYRUN} -le 2 ] ; then
809	IGCM_comp_DelFixeBoundaryFiles
810	ls -la
811	fi
812
813	# Clean ${RUN_DIR}=${RUN_DIR_PATH}/${config_UserChoices_TagName}/${config_UserChoices_JobName}
814	# Only for production run (No clean up in DEV or DEB mode)
815	# and command sent from .. directory.
816	IGCM_sys_Cd ..
817	[ X${JobType} = XRUN ] && IGCM_sys_Rm -rf ${RUN_DIR}
818
819	IGCM_debug_PopStack "IGCM_config_Finalize"
820	}
821
822	#===================================

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