| 1 | #!/bin/ksh |
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| 2 | |
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| 3 | #************************************************************** |
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| 4 | # Author: Patrick Brockmann, Martial Mancip |
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| 5 | # Contact: Patrick.Brockmann__at__cea.fr Martial.Mancip__at__ipsl.jussieu.fr |
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| 6 | # $Revision:: $ Revision of last commit |
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| 7 | # $Author:: $ Author of last commit |
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| 8 | # $Date:: $ Date of last commit |
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| 9 | # IPSL (2006) |
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| 10 | # This software is governed by the CeCILL licence see libIGCM/libIGCM_CeCILL.LIC |
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| 11 | # |
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| 12 | #************************************************************** |
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| 13 | |
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| 14 | #================================================== |
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| 15 | # The documentation of this file can be automatically generated |
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| 16 | # if you use the prefix #D- for comments to be extracted. |
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| 17 | # Extract with command: cat lib* | grep "^#D-" | cut -c "4-" |
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| 18 | #================================================== |
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| 19 | |
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| 20 | #================================================== |
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| 21 | # Add high level verbosity |
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| 22 | typeset -i Verbosity=${Verbosity:=3} |
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| 23 | |
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| 24 | #================================================== |
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| 25 | # DEBUG_debug |
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| 26 | # Add low level verbosity |
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| 27 | DEBUG_debug=${DEBUG_debug:=false} |
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| 28 | |
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| 29 | #D- postProcessingStopLevel (0,1,2,3) |
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| 30 | #D- 3 stop if any post-processing went wrong |
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| 31 | #D- 2 dont stop if atlas, monitoring or metrics failed |
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| 32 | #D- 1 dont stop if atlas, monitoring, metrics, create_ts or create_se failed |
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| 33 | #D- 0 dont stop if atlas, monitoring, metrics, create_ts, create_se, rebuild or pack_* failed |
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| 34 | postProcessingStopLevel=${postProcessingStopLevel:=0} |
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| 35 | |
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| 36 | #================================================== |
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| 37 | # GENERATE RANDOM ERROR ; only apply if ( ${DEBUG_debug} ) |
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| 38 | typeset -r RandomError=false |
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| 39 | |
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| 40 | #================================================== |
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| 41 | # NULL_STR |
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| 42 | # Default null string |
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| 43 | typeset -r NULL_STR="_0_" |
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| 44 | |
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| 45 | #================================================== |
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| 46 | # libIGCM_CurrentTag |
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| 47 | # Current libIGCM tag, check compatibilty with *.card |
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| 48 | typeset -r libIGCMVersion="2.8.1" |
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| 49 | |
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| 50 | #================================================== |
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| 51 | # Exit Flag (internal debug) |
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| 52 | # When true, end the master loop AFTER SAVES FILES |
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| 53 | ExitFlag=false |
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| 54 | |
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| 55 | #================================================== |
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| 56 | # When we start to run the simulation is not finished |
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| 57 | simulationIsOver=false |
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| 58 | |
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| 59 | #================================================== |
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| 60 | # When we start to run we dont flush AMQP messages |
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| 61 | FlushAMQP=false |
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| 62 | |
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| 63 | #================================================== |
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| 64 | # Declare a stack of functions calls |
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| 65 | unset IGCM_debug_Stack |
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| 66 | unset IGCM_debug_StackArgs |
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| 67 | unset IGCM_debug_StackTiming |
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| 68 | IGCM_debug_Stack[0]=${NULL_STR} |
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| 69 | IGCM_debug_StackArgs[0]=${NULL_STR} |
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| 70 | IGCM_debug_StackTiming[0]=${NULL_STR} |
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| 71 | IGCM_debug_LenStack=0 |
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| 72 | |
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| 73 | #D-#================================================================== |
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| 74 | #D-function IGCM_debug_getDate_ms |
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| 75 | #D- * Purpose: Give number of milliseconds since 01-jan-1970 |
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| 76 | function IGCM_debug_getDate_ms |
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| 77 | { |
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| 78 | typeset nanosecs ms |
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| 79 | # nano secondes since 01-jan-1970 |
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| 80 | nanosecs=$( date +%s%N ) |
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| 81 | |
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| 82 | # truncate the last 6 digits to get milliseconds since 01-jan-1970 |
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| 83 | ms=${nanosecs:0:${#nanosecs}-6} |
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| 84 | |
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| 85 | echo "$ms" |
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| 86 | } |
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| 87 | |
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| 88 | #D-#================================================================== |
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| 89 | #D-function IGCM_debug_sizeOfTabContent |
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| 90 | #D- * Purpose: Give sumed size of a list of files |
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| 91 | #D- * Usage: IGCM_debug_sizeOfTabContent entityList destination |
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| 92 | #D- * where entityList is a list of files or directory |
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| 93 | #D- * where dest is either a directory or a file name |
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| 94 | function IGCM_debug_sizeOfTabContent |
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| 95 | { |
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| 96 | typeset entityListe destination iEntity sizeKo sumSizeKo sumSizeMo |
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| 97 | |
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| 98 | eval set +A entityListe \${${1}} |
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| 99 | destination=${2} |
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| 100 | sumSizeKo=0 |
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| 101 | |
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| 102 | # Here we will try to compute size (file or directory size) from local path and not from archive. |
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| 103 | for ((i = 0; i < ${#entityListe[*]}; i += 1)) ; do |
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| 104 | if [ -f ${entityListe[$i]} ] ; then |
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| 105 | # One file or a bunch of files has been copied without renaming from a visible filesystem |
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| 106 | iEntity=${entityListe[$i]} |
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| 107 | elif [ -f ${entityListe[$i]##/*/} ] ; then |
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| 108 | # One file or a bunch of files has been copied without renaming from an non visible filesystem |
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| 109 | # remove path /home/login/../ from entityListe elements |
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| 110 | iEntity=${entityListe[$i]##/*/} |
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| 111 | elif [ -f ${destination} ] ; then |
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| 112 | # a file has been copied and renamed |
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| 113 | iEntity=${destination} |
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| 114 | elif [ -f ${destination}/${entityListe[$i]##/*/} ] ; then |
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| 115 | # a copy in a directory but not in ${PWD} |
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| 116 | iEntity=${destination}/${entityListe[$i]##/*/} |
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| 117 | elif [ -d ${entityListe[$i]} ] ; then |
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| 118 | # a directory has been copied from a non remote place |
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| 119 | iEntity=${entityListe[$i]} |
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| 120 | elif [ -d ${destination}/${entityListe[$i]##/*/} ] ; then |
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| 121 | # a directory has been copied from a remote archive and not renamed |
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| 122 | iEntity=${destination}/${entityListe[$i]##/*/} |
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| 123 | elif [ -d ${destination} ] ; then |
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| 124 | # a directory has been copied from a remote archive and renamed |
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| 125 | iEntity=${destination} |
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| 126 | fi |
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| 127 | sizeKo=$( du --apparent-size -skL ${iEntity} | gawk '{print $1}' ) |
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| 128 | sumSizeKo=$(( $sumSizeKo + $sizeKo )) |
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| 129 | done |
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| 130 | sumSizeMo=$( echo "scale=6;${sumSizeKo}/1024" | bc ) |
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| 131 | echo "${sumSizeKo}|${sumSizeMo}" |
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| 132 | } |
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| 133 | |
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| 134 | #D-#================================================================== |
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| 135 | #D-function IGCM_debug_send_AMQP_msg__MAILTUNNEL |
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| 136 | #D- * Purpose: Take over AMQP C client using mail as a message recipient |
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| 137 | #D- * One argument : base64 encoded message |
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| 138 | #D- * Attach encoded config.card when starting the simulation |
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| 139 | |
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| 140 | function IGCM_debug_send_AMQP_msg__MAILTUNNEL { |
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| 141 | |
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| 142 | typeset b64_encoded_msg mail_recipient |
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| 143 | typeset buffer send_messages mail_frequency |
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| 144 | typeset last_mail_date__file |
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| 145 | typeset secondsBetweenRefAndLastMail secondsSinceLastMail |
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| 146 | |
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| 147 | b64_encoded_msg=$1 |
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| 148 | |
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| 149 | mail_recipient="superviseur@ipsl.jussieu.fr" |
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| 150 | send_messages=0 |
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| 151 | mail_frequency=3600 # in seconds |
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| 152 | # use to keep track when was last mail sent (maybe to be replaced with global variable) |
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| 153 | last_mail_date__file=${R_BUF}/.stamp.${config_UserChoices_TagName}.${config_UserChoices_JobName} |
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| 154 | # use to accumulate messages before sending them |
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| 155 | buffer=${R_BUF}/.buffer.${config_UserChoices_TagName}.${config_UserChoices_JobName} |
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| 156 | |
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| 157 | # init |
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| 158 | if [ ! -f "${buffer}" ]; then |
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| 159 | touch ${buffer} |
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| 160 | fi |
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| 161 | |
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| 162 | if [ ! -f "${last_mail_date__file}" ]; then |
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| 163 | touch ${last_mail_date__file} |
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| 164 | else |
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| 165 | # compute last time the file was changed (in seconds) |
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| 166 | secondsBetweenRefAndLastMail=$(stat -c %Y ${last_mail_date__file}) |
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| 167 | status=$? |
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| 168 | # |
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| 169 | # Only execute this block when the stat command succeeded. |
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| 170 | # The stat command might fail in some circumstance but we consider it is ok to continue anyway. |
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| 171 | if [ ${status} -eq 0 ] ; then |
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| 172 | secondsSinceLastMail=$(( $(date +%s) - ${secondsBetweenRefAndLastMail} )) |
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| 173 | # send message when exceeding threshold |
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| 174 | [ ${secondsSinceLastMail} -gt ${mail_frequency} ] && send_messages=1 |
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| 175 | fi |
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| 176 | fi |
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| 177 | |
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| 178 | # queue messages in the buffer |
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| 179 | echo ${b64_encoded_msg} >> ${buffer} |
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| 180 | |
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| 181 | # send mail |
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| 182 | |
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| 183 | if [ X${initBigBro} = Xtrue ] ; then |
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| 184 | #echo $(date +"%Y-%m-%dT%H:%M:%S.%N%z") > ${SUBMIT_DIR}/mail.txt |
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| 185 | mailx -s "[TEMPORARY AMQP CHANNEL]" -a ${SUBMIT_DIR}/config.card.base64 ${mail_recipient} < ${buffer} # send buffer |
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| 186 | rm -f $buffer ; touch ${buffer} # clear buffer |
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| 187 | touch ${last_mail_date__file} # memorize last mail date |
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| 188 | rm -f ${SUBMIT_DIR}/config.card.base64 # remove temporary file |
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| 189 | initBigBro=false |
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| 190 | elif [ ${send_messages} -eq 1 ] ; then |
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| 191 | #echo $(date +"%Y-%m-%dT%H:%M:%S.%N%z") >> ${SUBMIT_DIR}/mail.txt |
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| 192 | mailx -s "[TEMPORARY AMQP CHANNEL]" ${mail_recipient} < ${buffer} # send buffer |
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| 193 | rm -f ${buffer} ; touch ${buffer} # flush the buffer |
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| 194 | touch ${last_mail_date__file} # memorize last mail date |
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| 195 | fi |
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| 196 | |
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| 197 | if ( ${FlushAMQP} ) ; then |
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| 198 | mailx -s "[TEMPORARY AMQP CHANNEL]" ${mail_recipient} < ${buffer} # send buffer |
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| 199 | rm -f ${buffer} # cleaning behind us |
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| 200 | rm -f ${last_mail_date__file} # cleaning behind us |
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| 201 | fi |
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| 202 | |
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| 203 | # Allways all good for now. |
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| 204 | return 0 |
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| 205 | } |
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| 206 | |
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| 207 | #D-#================================================================== |
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| 208 | #D-function IGCM_debug_sendAMQP_Metrics |
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| 209 | #D- * Purpose: Take over AMQP C client using mail as a message recipient |
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| 210 | #D- * Two arguments : - Directory where metrics.json files can be found |
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| 211 | #D- * - Metrics Group Name. metrics will be added to this group |
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| 212 | #D- * Attach encoded metrics.json files. |
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| 213 | |
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| 214 | function IGCM_debug_sendAMQP_Metrics { |
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| 215 | |
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| 216 | typeset mail_recipient encodedBody |
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| 217 | if [ X${ActivateBigBro} = Xtrue ] ; then |
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| 218 | mail_recipient="superviseur@ipsl.jussieu.fr" |
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| 219 | # Metrics tag on server side |
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| 220 | code=7100 |
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| 221 | # Usual AMQP message to route messages on server side |
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| 222 | encodedBody=$( echo "{${genericSimulationID},\"msgCode\":\"${code}\",\"msgUID\":\"$(uuidgen)\",\"metricsGroupName\":\"${2}\",\"msgTimestamp\":\"$( date +"%Y-%m-%dT%H:%M:%S.%N%z" )\"}" | base64 -w 0 ) |
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| 223 | # send mail |
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| 224 | attachmentsOptions="" |
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| 225 | for metricsFile in $( ls $1/*json ) ; do |
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| 226 | attachmentsOptions="-a ${metricsFile} ${attachmentsOptions}" |
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| 227 | done |
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| 228 | IGCM_debug_Print 2 "IGCM_debug_sendAMQP_Metrics " |
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| 229 | echo ${encodedBody}|mailx -s "[TEMPORARY AMQP CHANNEL]" ${attachmentsOptions} ${mail_recipient} |
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| 230 | fi |
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| 231 | |
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| 232 | # Allways all good for now. |
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| 233 | return 0 |
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| 234 | } |
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| 235 | |
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| 236 | #D-#================================================================== |
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| 237 | #D-function IGCM_debug_sendAMQP_projectAccounting |
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| 238 | #D- * Purpose: Take over AMQP C client using mail as a message recipient |
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| 239 | #D- * One argument : - File name where project accounting details are stored |
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| 240 | #D- * Attach encoded accounting file. |
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| 241 | |
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| 242 | function IGCM_debug_sendAMQP_projectAccounting { |
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| 243 | |
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| 244 | typeset mail_recipient encodedBody |
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| 245 | if [ X${ActivateBigBro} = Xtrue ] ; then |
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| 246 | mail_recipient="superviseur@ipsl.jussieu.fr" |
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| 247 | # Metrics tag on server side |
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| 248 | code=7010 |
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| 249 | # Usual AMQP message to route messages on server side |
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| 250 | encodedBody=$( echo "{${genericSimulationID},\"msgCode\":\"${code}\",\"msgUID\":\"$(uuidgen)\",\"accountingProject\":\"${PROJECT}\",\"centre\":\"${CENTER}\",\"msgTimestamp\":\"$( date +"%Y-%m-%dT%H:%M:%S.%N%z" )\"}" | base64 -w 0 ) |
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| 251 | # send mail |
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| 252 | attachmentsOptions="-a ${1}" |
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| 253 | IGCM_debug_Print 2 "IGCM_debug_sendAMQP_projectAccounting" |
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| 254 | echo ${encodedBody}|mailx -s "[TEMPORARY AMQP CHANNEL]" ${attachmentsOptions} ${mail_recipient} |
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| 255 | # clean behind |
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| 256 | rm -f $1 |
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| 257 | fi |
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| 258 | |
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| 259 | # Allways all good for now. |
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| 260 | return 0 |
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| 261 | } |
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| 262 | |
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| 263 | #D-#================================================================== |
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| 264 | #D-function IGCM_debug_SendAMQP |
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| 265 | #D- * Purpose: Send body; encoded body and config.card to rabbitMQ |
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| 266 | function IGCM_debug_sendAMQP { |
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| 267 | |
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| 268 | typeset decal first additionnalOption encodedBody |
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| 269 | |
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| 270 | # Encode message Body |
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| 271 | encodedBody=$( echo "${Body}" | base64 -w 0 ) |
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| 272 | |
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| 273 | # Send config.card ? |
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| 274 | if [ X${1} = Xactivate ] ; then |
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| 275 | # Encode config.card |
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| 276 | cat ${SUBMIT_DIR}/config.card | base64 -w 0 > ${SUBMIT_DIR}/config.card.base64 |
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| 277 | # Prepare additionnal option |
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| 278 | additionnalOption="-f ${SUBMIT_DIR}/config.card.base64" |
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| 279 | # |
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| 280 | initBigBro=true |
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| 281 | else |
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| 282 | additionnalOption= |
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| 283 | # |
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| 284 | initBigBro=false |
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| 285 | fi |
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| 286 | |
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| 287 | # Only cosmetics : stack file |
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| 288 | if [ X${ActivateStackFilling} = Xtrue ] ; then |
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| 289 | decal=0 |
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| 290 | while [ ${decal} -lt ${IGCM_debug_LenStack} ]; do |
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| 291 | printf ' ' >> ${StackFileLocation}/${StackFileName} |
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| 292 | (( decal = decal + 1 )) |
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| 293 | done |
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| 294 | # Log to stack file using human readable format |
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| 295 | echo "${Body}" >> ${StackFileLocation}/${StackFileName} |
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| 296 | fi |
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| 297 | |
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| 298 | # Log separately encoded AMQP message command for reuse in a mock up |
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| 299 | #echo sendAMQPMsg -h localhost -p 5672 ${additionnalOption} -b ${encodedBody} >> ${RUN_DIR_PATH}/send.AMQP.${config_UserChoices_JobName}.${config_UserChoices_ExperimentName}.${config_UserChoices_SpaceName}.${config_UserChoices_TagName}.${CumulPeriod}.history.txt |
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| 300 | |
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| 301 | # Send the message |
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| 302 | if [ X${BigBrotherChannel} = XMAIL ] ; then |
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| 303 | IGCM_debug_send_AMQP_msg__MAILTUNNEL "${encodedBody}" |
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| 304 | status=$? |
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| 305 | else |
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| 306 | sendAMQPMsg -h localhost -p 5672 ${additionnalOption} -b ${encodedBody} |
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| 307 | status=$? |
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| 308 | fi |
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| 309 | |
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| 310 | if [ ${status} -gt 0 ] ; then |
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| 311 | IGCM_debug_Print 2 "IGCM_debug_Push/PopStack/ActivateBigBro : command sendAMQPMsg failed error code ${status}" |
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| 312 | echo sendAMQPMsg -h localhost -p 5672 -b "${Body}" |
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| 313 | exit 1 |
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| 314 | fi |
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| 315 | } |
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| 316 | |
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| 317 | #D-#================================================================== |
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| 318 | #D-function IGCM_debug_CallStack |
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| 319 | #D-* Purpose: Print the call stack tree from the oldest to the youngest (opposite of the display standard) |
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| 320 | #D- |
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| 321 | function IGCM_debug_CallStack { |
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| 322 | if ( $DEBUG_debug ) ; then |
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| 323 | # Cosmetics |
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| 324 | typeset i decal |
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| 325 | i=0 |
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| 326 | until [ $i -eq ${IGCM_debug_LenStack} ]; do |
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| 327 | decal=0 |
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| 328 | until [ $decal -eq ${i} ]; do |
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| 329 | printf -- ' ' |
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| 330 | (( decal = decal + 1 )) |
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| 331 | done |
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| 332 | echo "$i - ${IGCM_debug_Stack[$(( $IGCM_debug_LenStack-$i-1 ))]}" "(${IGCM_debug_StackArgs[$(( $IGCM_debug_LenStack-$i-1 ))]})" |
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| 333 | ((i = i + 1)) |
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| 334 | done |
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| 335 | fi |
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| 336 | } |
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| 337 | |
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| 338 | #D-#================================================================== |
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| 339 | #D-function IGCM_debug_PushStack |
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| 340 | #D-* Purpose: Push a function name in the stack |
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| 341 | #D- |
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| 342 | function IGCM_debug_PushStack { |
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| 343 | if ( $DEBUG_debug ) ; then |
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| 344 | typeset decal inputs startTime_ms |
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| 345 | |
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| 346 | # Only cosmetics : stack file |
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| 347 | if [ X${ActivateStackFilling} = Xtrue ] ; then |
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| 348 | echo >> ${StackFileLocation}/${StackFileName} |
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| 349 | decal=0 |
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| 350 | while [ ${decal} -lt ${IGCM_debug_LenStack} ]; do |
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| 351 | printf ' ' >> ${StackFileLocation}/${StackFileName} |
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| 352 | (( decal = decal + 1 )) |
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| 353 | done |
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| 354 | |
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| 355 | # Fill the stack file |
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| 356 | echo "> ${IGCM_debug_LenStack} : ${@}" >> ${StackFileLocation}/${StackFileName} |
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| 357 | fi |
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| 358 | |
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| 359 | # Save input list in an indexed array |
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| 360 | INPUTS=( $@ ) |
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| 361 | |
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| 362 | # Get timing information |
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| 363 | startTime_ms=$( IGCM_debug_getDate_ms ) |
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| 364 | |
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| 365 | # We add function call name on beginning of the stack |
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| 366 | set +A IGCM_debug_Stack -- ${1} ${IGCM_debug_Stack[*]} |
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| 367 | |
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| 368 | # Save timing in milliseconds in an indexed array |
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| 369 | set +A IGCM_debug_StackTiming -- ${startTime_ms} ${IGCM_debug_StackTiming[*]} |
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| 370 | |
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| 371 | # We include the "null" Args in the beginning of the StackArgs |
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| 372 | set +A IGCM_debug_StackArgs ${NULL_STR} ${IGCM_debug_StackArgs[*]} |
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| 373 | |
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| 374 | # Then, we shift StackArgs tabular |
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| 375 | # Replacing blank separated list by comma separated list of quoted elements (except the first and last element) |
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| 376 | if [ $# -gt 1 ]; then |
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| 377 | IGCM_debug_StackArgs[0]=$(echo ${INPUTS[*]:1} | sed -e "s/\ /\",\"/g" ) |
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| 378 | fi |
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| 379 | |
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| 380 | # Increment LenStack |
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| 381 | (( IGCM_debug_LenStack = IGCM_debug_LenStack + 1 )) |
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| 382 | |
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| 383 | #IGCM_debug_CallStack |
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| 384 | fi |
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| 385 | } |
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| 386 | |
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| 387 | #D-#================================================================== |
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| 388 | #D-function IGCM_debug_PopStack |
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| 389 | #D-* Purpose: Pop a function name in the stack |
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| 390 | #D- |
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| 391 | function IGCM_debug_PopStack { |
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| 392 | if ( $DEBUG_debug ) ; then |
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| 393 | typeset i decal command arguments startTime_ms endTime_ms |
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| 394 | typeset instrumentation dest prefix |
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| 395 | # they are not typeset because they are send "by adress" to son functions |
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| 396 | # we unset them to avoid "memory effect" |
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| 397 | unset fileList source |
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| 398 | |
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| 399 | # INTRODUCE SIMPLE ERROR GENERATOR TO TEST SUPERVISOR |
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| 400 | # PROBABILITY ERROR IS 0.0001 PER COMMAND OR FUNCTION CALL |
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| 401 | # THERE ARE ~500 COMMAND OR FUNCTION CALL PER PERIOD |
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| 402 | # ONLY WHEN TaskType is "computing". |
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| 403 | if [ X${ActivateBigBro} = Xtrue ] ; then |
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| 404 | if [ X${TaskType} = Xcomputing ]; then |
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| 405 | if ( ${RandomError} ) ; then |
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| 406 | if [ $((RANDOM%10000)) -le 10 ] ; then |
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| 407 | IGCM_debug_Print 1 "Random error has been triggered" |
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| 408 | if [ X${ActivateStackFilling} = Xtrue ] ; then |
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| 409 | echo "RANDOM ERROR" >> ${StackFileLocation}/${StackFileName} |
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| 410 | fi |
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| 411 | ExitFlag=true |
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| 412 | fi |
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| 413 | fi |
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| 414 | fi |
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| 415 | fi |
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| 416 | |
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| 417 | if [ "${IGCM_debug_Stack[0]}" = "${1}" ]; then |
|---|
| 418 | # Everything is cool |
|---|
| 419 | |
|---|
| 420 | # Get timing information |
|---|
| 421 | endTime_ms=$( IGCM_debug_getDate_ms ) |
|---|
| 422 | |
|---|
| 423 | # Save Stack information before poping the stack |
|---|
| 424 | command=${IGCM_debug_Stack[0]} |
|---|
| 425 | |
|---|
| 426 | # Go from comma separated list of quoted elements (except the first and the last element) |
|---|
| 427 | # to unquoted space separated elements in an array |
|---|
| 428 | set -A arguments -- $( echo ${IGCM_debug_StackArgs[0]} | sed -e "s/\",\"/\ /g" ) |
|---|
| 429 | |
|---|
| 430 | # Save Stack information before poping the stack |
|---|
| 431 | startTime_ms=${IGCM_debug_StackTiming[0]} |
|---|
| 432 | |
|---|
| 433 | # Pop the stack |
|---|
| 434 | (( IGCM_debug_LenStack = IGCM_debug_LenStack - 1 )) |
|---|
| 435 | set -A IGCM_debug_Stack -- ${IGCM_debug_Stack[*]:1} |
|---|
| 436 | set -A IGCM_debug_StackArgs -- ${IGCM_debug_StackArgs[*]:1} |
|---|
| 437 | set -A IGCM_debug_StackTiming -- ${IGCM_debug_StackTiming[*]:1} |
|---|
| 438 | else |
|---|
| 439 | echo 'IGCM_debug_Exit : stack is corrupted ! LenStack =' ${IGCM_debug_LenStack} |
|---|
| 440 | IGCM_debug_Exit $@ |
|---|
| 441 | fi |
|---|
| 442 | |
|---|
| 443 | # Special actions depending on command to prepare IGCM_debug_PrintInfosActions call |
|---|
| 444 | # We are interested in: |
|---|
| 445 | # 0. Which command performs the work |
|---|
| 446 | # 1. Size of entity we are working with |
|---|
| 447 | # 2. Where are we reading |
|---|
| 448 | # 3. Where are we writing |
|---|
| 449 | # 4. How long it took |
|---|
| 450 | |
|---|
| 451 | instrumentation=false |
|---|
| 452 | |
|---|
| 453 | case ${command} in |
|---|
| 454 | # Classical copy (only files are given to IGCM_sys_Cp as options) |
|---|
| 455 | IGCM_sys_Cp) |
|---|
| 456 | instrumentation=true |
|---|
| 457 | # All but the latest |
|---|
| 458 | fileList=${arguments[*]:0:${#arguments[*]}-1} |
|---|
| 459 | # just need the first file to get the directory |
|---|
| 460 | source=${arguments[0]} |
|---|
| 461 | # Nothing but the latest |
|---|
| 462 | dest=${arguments[${#arguments[*]}-1]} |
|---|
| 463 | # Size of file whose name are stored in a list |
|---|
| 464 | entitySize=$( IGCM_debug_sizeOfTabContent fileList ${dest} ) |
|---|
| 465 | ;; |
|---|
| 466 | |
|---|
| 467 | # Copy from archive machine or from buffer |
|---|
| 468 | IGCM_sys_Get|IGCM_sys_GetBuffer) |
|---|
| 469 | instrumentation=true |
|---|
| 470 | if [ ${#arguments[*]} -eq 2 ] ; then |
|---|
| 471 | source=${arguments[0]} |
|---|
| 472 | dest=${arguments[1]} |
|---|
| 473 | # Size of file whose name are stored in a variable |
|---|
| 474 | entitySize=$( IGCM_debug_sizeOfTabContent source ${dest} ) |
|---|
| 475 | elif ( [ ${#arguments[*]} -eq 3 ] && [ ${arguments[0]} = '/l' ] ) ; then |
|---|
| 476 | # IGCM_sys_Get /l liste_file[*] /ccc/scratch/cont003/dsm/p86denv/RUN_DIR/985998_14754/ |
|---|
| 477 | # Keep the array name hosting the all list |
|---|
| 478 | eval set +A fileList \${${arguments[1]}} |
|---|
| 479 | # just need the first file to get the directory |
|---|
| 480 | source=${fileList[0]} |
|---|
| 481 | dest=${arguments[2]} |
|---|
| 482 | # Size of file whose name are stored in a list |
|---|
| 483 | entitySize=$( IGCM_debug_sizeOfTabContent fileList[*] ${dest} ) |
|---|
| 484 | elif [ [ ${#arguments[*]} -ge 3 ] ; then |
|---|
| 485 | # All but the latest |
|---|
| 486 | fileList=${arguments[*]:0:${#arguments[*]}-1} |
|---|
| 487 | # just need the first file to get the directory |
|---|
| 488 | source=${arguments[0]} |
|---|
| 489 | # Nothing but the latest |
|---|
| 490 | dest=${arguments[${#arguments[*]}-1]} |
|---|
| 491 | # Size of file whose name are stored in a list |
|---|
| 492 | entitySize=$( IGCM_debug_sizeOfTabContent fileList ${dest} ) |
|---|
| 493 | fi |
|---|
| 494 | ;; |
|---|
| 495 | |
|---|
| 496 | # Copy from compute node or copy to archive/buffer |
|---|
| 497 | IGCM_sys_Get_Master|IGCM_sys_Get_Dir|IGCM_sys_Put_Out|IGCM_sys_PutBuffer_Out) |
|---|
| 498 | instrumentation=true |
|---|
| 499 | source=${arguments[0]} |
|---|
| 500 | dest=${arguments[1]} |
|---|
| 501 | # Size of file whose name are stored in a variable |
|---|
| 502 | entitySize=$( IGCM_debug_sizeOfTabContent source ${dest} ) |
|---|
| 503 | ;; |
|---|
| 504 | |
|---|
| 505 | # Rebuild command |
|---|
| 506 | IGCM_sys_rebuild|IGCM_sys_rebuild_station) |
|---|
| 507 | instrumentation=true |
|---|
| 508 | # All but the first |
|---|
| 509 | fileList=${arguments[*]:1:${#arguments[*]}-1} |
|---|
| 510 | # just need a file to get the directory |
|---|
| 511 | source=${arguments[1]} |
|---|
| 512 | # Nothing but the first |
|---|
| 513 | dest=${arguments[0]} |
|---|
| 514 | # Size of file whose name are stored in a list |
|---|
| 515 | entitySize=$( IGCM_debug_sizeOfTabContent fileList ${dest} ) |
|---|
| 516 | ;; |
|---|
| 517 | |
|---|
| 518 | # NCO commands |
|---|
| 519 | IGCM_sys_ncrcat|IGCM_sys_ncecat|IGCM_sys_ncra|IGCM_sys_ncks|IGCM_sys_cdo) |
|---|
| 520 | # Example of what we want to catch : only filenames in those command lines |
|---|
| 521 | # IGCM_sys_ncrcat -O -v ${list_var_final_ncrcat} ${OUT_SE[*]} ${RESULT_SE} |
|---|
| 522 | # IGCM_sys_ncrcat --hst -v ${liste_coord}${var} ${file1} ${liste_file_tmp[*]} ${file_out} |
|---|
| 523 | # IGCM_sys_ncrcat -p ${dir} ${liste_file_tmp} --output ${output} |
|---|
| 524 | # IGCM_sys_ncrcat -x -v ${list_var} -p ${dir} ${liste_file_tmp} --output ${output} |
|---|
| 525 | instrumentation=true |
|---|
| 526 | keepGoing=true |
|---|
| 527 | prefix=. |
|---|
| 528 | i=0 |
|---|
| 529 | while ( ${keepGoing} ) ; do |
|---|
| 530 | # the last one is not interesting |
|---|
| 531 | if [ ${i} -eq ${#arguments[*]}-1 ] ; then |
|---|
| 532 | keepGoing=false |
|---|
| 533 | # look after "-p" option. Path prefix is the following arguments |
|---|
| 534 | elif [ ${arguments[${i}]} = "-p" ] ; then |
|---|
| 535 | ((i = i + 1)) |
|---|
| 536 | prefix=${arguments[${i}]} |
|---|
| 537 | ((i = i + 1)) |
|---|
| 538 | elif [ ${i} -eq ${#arguments[*]}-1 ] ; then |
|---|
| 539 | keepGoing=false |
|---|
| 540 | # looking for files |
|---|
| 541 | elif [ -f ${prefix}/${arguments[${i}]} ] ; then |
|---|
| 542 | fileList="${fileList} ${prefix}/${arguments[${i}]}" |
|---|
| 543 | ((i = i + 1)) |
|---|
| 544 | # other options are not interesting |
|---|
| 545 | else |
|---|
| 546 | ((i = i + 1)) |
|---|
| 547 | fi |
|---|
| 548 | done |
|---|
| 549 | |
|---|
| 550 | # i value is at least 1 |
|---|
| 551 | # just need one file to get the directory |
|---|
| 552 | source=$( echo ${fileList} | gawk '{print $1}' ) |
|---|
| 553 | # Nothing but the latest |
|---|
| 554 | dest=${arguments[${#arguments[*]}-1]} |
|---|
| 555 | # Size of file whose name are stored in a list |
|---|
| 556 | entitySize=$( IGCM_debug_sizeOfTabContent fileList ${dest} ) |
|---|
| 557 | ;; |
|---|
| 558 | esac |
|---|
| 559 | |
|---|
| 560 | # Print information related to instrumentation |
|---|
| 561 | ( ${instrumentation} ) && IGCM_debug_PrintInfosActions ${command} ${entitySize} ${startTime_ms} ${endTime_ms} ${dest} ${source} |
|---|
| 562 | |
|---|
| 563 | # Only cosmetics : stack file |
|---|
| 564 | if [ X${ActivateStackFilling} = Xtrue ] ; then |
|---|
| 565 | decal=0 |
|---|
| 566 | while [ ${decal} -lt ${IGCM_debug_LenStack} ]; do |
|---|
| 567 | printf ' ' >> ${StackFileLocation}/${StackFileName} |
|---|
| 568 | (( decal = decal + 1 )) |
|---|
| 569 | done |
|---|
| 570 | fi |
|---|
| 571 | |
|---|
| 572 | if ( ${ExitFlag} ) ; then |
|---|
| 573 | # Inform the stack file |
|---|
| 574 | if [ X${ActivateStackFilling} = Xtrue ] ; then |
|---|
| 575 | echo '!!! ExitFlag has been activated !!!' >> ${StackFileLocation}/${StackFileName} |
|---|
| 576 | fi |
|---|
| 577 | |
|---|
| 578 | # Unplugged message 4900 handling for now. To ease downstream treatment. |
|---|
| 579 | if [ X${ActivateBigBro} = Xtrue ] ; then |
|---|
| 580 | if [ X${TaskType} = Xcomputing ]; then |
|---|
| 581 | # RabbitMQ message code "COMPUTING JOBs COMMAND FAILURE" |
|---|
| 582 | code=1900 |
|---|
| 583 | elif [ X${TaskType} = Xpost-processing ]; then |
|---|
| 584 | # RabbitMQ message code "POST-PROCESSING JOBs COMMAND FAILURE" |
|---|
| 585 | code=2900 |
|---|
| 586 | elif [ X${TaskType} = Xchecking ]; then |
|---|
| 587 | # RabbitMQ message code "POST-PROCESSING FROM CHECKER JOBs COMMAND FAILURE" |
|---|
| 588 | code=3900 |
|---|
| 589 | fi |
|---|
| 590 | # RabbitMQ message body |
|---|
| 591 | Body=$( echo "{${genericSimulationID},\"msgCode\":\"${code}\",\"msgUID\":\"$(uuidgen)\",\"command\":\"${command}\",\"msgTimestamp\":\"$( date +"%Y-%m-%dT%H:%M:%S.%N%z" )\"}" ) |
|---|
| 592 | |
|---|
| 593 | # Fill the rabbitMQ queue |
|---|
| 594 | IGCM_debug_sendAMQP |
|---|
| 595 | fi |
|---|
| 596 | else |
|---|
| 597 | # Inform the stack file |
|---|
| 598 | if [ X${ActivateStackFilling} = Xtrue ] ; then |
|---|
| 599 | echo "< ${IGCM_debug_LenStack} : ${@}" >> ${StackFileLocation}/${StackFileName} |
|---|
| 600 | fi |
|---|
| 601 | fi |
|---|
| 602 | |
|---|
| 603 | # Reset array if necessary |
|---|
| 604 | if [ ${IGCM_debug_LenStack} = 0 ]; then |
|---|
| 605 | #echo |
|---|
| 606 | #IGCM_debug_Print 3 "Clean stack array" |
|---|
| 607 | #echo |
|---|
| 608 | unset IGCM_debug_Stack |
|---|
| 609 | unset IGCM_debug_StackArgs |
|---|
| 610 | unset IGCM_debug_StackTiming |
|---|
| 611 | IGCM_debug_Stack[0]=${NULL_STR} |
|---|
| 612 | IGCM_debug_StackArgs[0]=${NULL_STR} |
|---|
| 613 | IGCM_debug_StackTiming[0]=${NULL_STR} |
|---|
| 614 | fi |
|---|
| 615 | fi |
|---|
| 616 | #IGCM_debug_CallStack |
|---|
| 617 | } |
|---|
| 618 | |
|---|
| 619 | #D-#================================================================== |
|---|
| 620 | #D-function IGCM_debug_BigBro_Initialize |
|---|
| 621 | #D-* Purpose: switch rabbitMQ on |
|---|
| 622 | #D- |
|---|
| 623 | function IGCM_debug_BigBro_Initialize { |
|---|
| 624 | IGCM_debug_PushStack "IGCM_debug_BigBro_Initialize" |
|---|
| 625 | |
|---|
| 626 | typeset postProcessingIDLength postProcessingName postProcessingDate postProcessingDimn postProcessingComp postProcessingFile accountingFile |
|---|
| 627 | |
|---|
| 628 | # Message type standard fields: |
|---|
| 629 | # https://github.com/Prodiguer/prodiguer-docs/wiki/MQ-Standard-Message-Fields |
|---|
| 630 | |
|---|
| 631 | # Message type dictionnary and custom fields: |
|---|
| 632 | # https://github.com/Prodiguer/prodiguer-docs/wiki/Monitoring-Message-Dictionary |
|---|
| 633 | |
|---|
| 634 | if [ X${BigBrother} = Xtrue ] ; then |
|---|
| 635 | # create a unique ID for this specific job |
|---|
| 636 | jobuid=$(uuidgen) |
|---|
| 637 | |
|---|
| 638 | # get the assigned id by the scheduler for that job |
|---|
| 639 | IGCM_sys_getJobSchedulerID jobSchedulerID |
|---|
| 640 | |
|---|
| 641 | if [ X${TaskType} = Xcomputing ]; then |
|---|
| 642 | if ( ${FirstInitialize} ) ; then |
|---|
| 643 | # RabbitMQ message code "BEGIN A SIMULATION" |
|---|
| 644 | code=0000 |
|---|
| 645 | # create and persist a unique id for this simulation |
|---|
| 646 | simuid=$(uuidgen) |
|---|
| 647 | IGCM_card_WriteOption ${SUBMIT_DIR}/run.card Configuration simuid ${simuid} |
|---|
| 648 | # Standard fields for the first message |
|---|
| 649 | genericSimulationID=$( echo "\"msgApplication\":\"monitoring\",\"msgProducer\":\"libigcm\",\"msgProducerVersion\":\"${libIGCMVersion}\",\"activity\":\"IPSL\",\"name\":\"${config_UserChoices_JobName}\",\"experiment\":\"${config_UserChoices_ExperimentName}\",\"space\":\"${config_UserChoices_SpaceName}\",\"model\":\"${config_UserChoices_TagName}\",\"startDate\":\"${config_UserChoices_DateBegin}\",\"endDate\":\"${config_UserChoices_DateEnd}\",\"login\":\"${LOGIN}\",\"centre\":\"${CENTER}\",\"machine\":\"${MASTER}\",\"simuid\":\"${simuid}\",\"jobuid\":\"${jobuid}\"" ) |
|---|
| 650 | # RabbitMQ message body with specific fields associated message codes treated here |
|---|
| 651 | Body=$( echo "{${genericSimulationID},\"msgCode\":\"${code}\",\"accountingProject\":\"${PROJECT}\",\"jobWarningDelay\":\"${jobWarningDelay}\",\"jobSchedulerID\":\"${jobSchedulerID}\",\"jobSubmissionPath\":\"${SUBMIT_DIR}\",\"msgUID\":\"$(uuidgen)\",\"msgTimestamp\":\"$( date +"%Y-%m-%dT%H:%M:%S.%N%z" )\"}" ) |
|---|
| 652 | # Fill the rabbitMQ queue (the config.card in use will be sent) |
|---|
| 653 | IGCM_debug_sendAMQP activate |
|---|
| 654 | else |
|---|
| 655 | # RabbitMQ message code "A NEW COMPUTING JOB IS RUNNING PART OF A SIMULATION" |
|---|
| 656 | code=1000 |
|---|
| 657 | # retrieve this simulation's unique id |
|---|
| 658 | IGCM_card_DefineVariableFromOption ${SUBMIT_DIR}/run.card Configuration simuid |
|---|
| 659 | simuid=${run_Configuration_simuid} |
|---|
| 660 | # Using standard fields for message others than the first one. Still subject to change |
|---|
| 661 | genericSimulationID=$( echo "\"msgApplication\":\"monitoring\",\"msgProducer\":\"libigcm\",\"msgProducerVersion\":\"${libIGCMVersion}\",\"simuid\":\"${simuid}\",\"jobuid\":\"${jobuid}\"" ) |
|---|
| 662 | # RabbitMQ message body with specific fields associated message codes treated here |
|---|
| 663 | Body=$( echo "{${genericSimulationID},\"msgCode\":\"${code}\",\"accountingProject\":\"${PROJECT}\",\"jobWarningDelay\":\"${jobWarningDelay}\",\"jobSchedulerID\":\"${jobSchedulerID}\",\"jobSubmissionPath\":\"${SUBMIT_DIR}\",\"msgUID\":\"$(uuidgen)\",\"msgTimestamp\":\"$( date +"%Y-%m-%dT%H:%M:%S.%N%z" )\"}" ) |
|---|
| 664 | # Fill the rabbitMQ queue |
|---|
| 665 | IGCM_debug_sendAMQP |
|---|
| 666 | fi |
|---|
| 667 | |
|---|
| 668 | # NOT VERY NICE BUT ... IT WORKS |
|---|
| 669 | # Be sure that the genericSimulationID will be small from now on |
|---|
| 670 | # Using standard fields for messages others than the first one. Still subject to change |
|---|
| 671 | genericSimulationID=$( echo "\"msgApplication\":\"monitoring\",\"msgProducer\":\"libigcm\",\"msgProducerVersion\":\"${libIGCMVersion}\",\"simuid\":\"${simuid}\",\"jobuid\":\"${jobuid}\"" ) |
|---|
| 672 | |
|---|
| 673 | elif [ X${TaskType} = Xpost-processing ]; then |
|---|
| 674 | # RabbitMQ message code "A NEW POST-PROCESSING JOB IS RUNNING PART OF A SIMULATION" |
|---|
| 675 | code=2000 |
|---|
| 676 | # retrieve this simulation's unique id |
|---|
| 677 | IGCM_card_DefineVariableFromOption ${SUBMIT_DIR}/run.card Configuration simuid |
|---|
| 678 | simuid=${run_Configuration_simuid} |
|---|
| 679 | # Using standard fields for message others than the first one. Still subject to change |
|---|
| 680 | genericSimulationID=$( echo "\"msgApplication\":\"monitoring\",\"msgProducer\":\"libigcm\",\"msgProducerVersion\":\"${libIGCMVersion}\",\"simuid\":\"${simuid}\",\"jobuid\":\"${jobuid}\"" ) |
|---|
| 681 | |
|---|
| 682 | # Specify the post-processing task we are dealing with |
|---|
| 683 | postProcessingIDLength=$( echo "${Script_Post_Output}" | tr -d -c "\." | wc -c ) |
|---|
| 684 | postProcessingName=$( echo "${Script_Post_Output}" | gawk -F. '{print $1}' ) |
|---|
| 685 | postProcessingDate=$( echo "${Script_Post_Output}" | gawk -F. '{print $2}' ) |
|---|
| 686 | postProcessingDimn="null" |
|---|
| 687 | postProcessingComp="null" |
|---|
| 688 | postProcessingFile="null" |
|---|
| 689 | if [ ${postProcessingIDLength} -eq 2 ] ; then |
|---|
| 690 | postProcessingDimn=$( echo "${Script_Post_Output}" | gawk -F. '{print $3}' ) |
|---|
| 691 | elif [ ${postProcessingIDLength} -eq 4 ] ; then |
|---|
| 692 | postProcessingComp=$( echo "${Script_Post_Output}" | gawk -F. '{print $4}' ) |
|---|
| 693 | postProcessingFile=$( echo "${Script_Post_Output}" | gawk -F. '{print $5}' ) |
|---|
| 694 | fi |
|---|
| 695 | |
|---|
| 696 | # RabbitMQ message body with specific fields associated message codes treated here |
|---|
| 697 | Body=$( echo "{${genericSimulationID},\"msgCode\":\"${code}\",\"accountingProject\":\"${PROJECT}\",\"jobWarningDelay\":\"${jobWarningDelay}\",\"jobSchedulerID\":\"${jobSchedulerID}\",\"jobSubmissionPath\":\"${SUBMIT_DIR}\",\"msgUID\":\"$(uuidgen)\",\"msgTimestamp\":\"$( date +"%Y-%m-%dT%H:%M:%S.%N%z" )\",\"postProcessingName\":\"${postProcessingName}\",\"postProcessingDate\":\"${postProcessingDate}\",\"postProcessingDimn\":\"${postProcessingDimn}\",\"postProcessingComp\":\"${postProcessingComp}\",\"postProcessingFile\":\"${postProcessingFile}\"}" ) |
|---|
| 698 | # Fill the rabbitMQ queue |
|---|
| 699 | IGCM_debug_sendAMQP |
|---|
| 700 | fi |
|---|
| 701 | |
|---|
| 702 | # Turn the flag on |
|---|
| 703 | ActivateBigBro=true |
|---|
| 704 | |
|---|
| 705 | # Save project accounting details in a file |
|---|
| 706 | accountingFile=cpt_${CENTER}_${PROJECT}_$( date +"%Y%m%d_%H%M" ).dat |
|---|
| 707 | IGCM_sys_projectAccounting ${accountingFile} |
|---|
| 708 | |
|---|
| 709 | # And send it |
|---|
| 710 | IGCM_debug_sendAMQP_projectAccounting ${accountingFile} |
|---|
| 711 | |
|---|
| 712 | fi |
|---|
| 713 | IGCM_debug_PopStack "IGCM_debug_BigBro_Initialize" |
|---|
| 714 | } |
|---|
| 715 | |
|---|
| 716 | #D-#================================================================== |
|---|
| 717 | #D-function IGCM_debug_BigBro_Update |
|---|
| 718 | #D-* Purpose: Update rabbitMQ messages exchanges during the run |
|---|
| 719 | #D- |
|---|
| 720 | function IGCM_debug_BigBro_Update { |
|---|
| 721 | IGCM_debug_PushStack "IGCM_debug_BigBro_Update" |
|---|
| 722 | |
|---|
| 723 | # Message type standard fields: |
|---|
| 724 | # https://github.com/Prodiguer/prodiguer-docs/wiki/MQ-Standard-Message-Fields |
|---|
| 725 | |
|---|
| 726 | # Message type dictionnary and custom fields: |
|---|
| 727 | # https://github.com/Prodiguer/prodiguer-docs/wiki/Monitoring-Message-Dictionary |
|---|
| 728 | |
|---|
| 729 | if [ X${ActivateBigBro} = Xtrue ] ; then |
|---|
| 730 | if [ X${TaskType} = Xcomputing ]; then |
|---|
| 731 | # Send ${PeriodDateBegin}, ${PeriodDateEnd} and ${CumulPeriod} |
|---|
| 732 | # RabbitMQ message body |
|---|
| 733 | Body=$( echo "{${genericSimulationID},\"msgCode\":\"1001\",\"PeriodDateBegin\":\"${PeriodDateBegin}\",\"PeriodDateEnd\":\"${PeriodDateEnd}\",\"CumulPeriod\":\"${CumulPeriod}\",\"msgUID\":\"$(uuidgen)\",\"msgTimestamp\":\"$( date +"%Y-%m-%dT%H:%M:%S.%N%z" )\"}" ) |
|---|
| 734 | # Fill the rabbitMQ queue |
|---|
| 735 | IGCM_debug_sendAMQP |
|---|
| 736 | fi |
|---|
| 737 | fi |
|---|
| 738 | IGCM_debug_PopStack "IGCM_debug_BigBro_Update" |
|---|
| 739 | } |
|---|
| 740 | |
|---|
| 741 | #D-#================================================================== |
|---|
| 742 | #D-function IGCM_debug_BigBro_Finalize |
|---|
| 743 | #D-* Purpose: Finalize rabbitMQ messages exchanges |
|---|
| 744 | #D- |
|---|
| 745 | function IGCM_debug_BigBro_Finalize { |
|---|
| 746 | IGCM_debug_PushStack "IGCM_debug_BigBro_Finalize" |
|---|
| 747 | |
|---|
| 748 | # Message type standard fields: |
|---|
| 749 | # https://github.com/Prodiguer/prodiguer-docs/wiki/MQ-Standard-Message-Fields |
|---|
| 750 | |
|---|
| 751 | # Message type dictionnary and custom fields: |
|---|
| 752 | # https://github.com/Prodiguer/prodiguer-docs/wiki/Monitoring-Message-Dictionary |
|---|
| 753 | |
|---|
| 754 | if ( $DEBUG_debug ) ; then |
|---|
| 755 | if [ X${ActivateBigBro} = Xtrue ] ; then |
|---|
| 756 | if [ X${TaskType} = Xcomputing ]; then |
|---|
| 757 | if ( ${simulationIsOver} ) ; then |
|---|
| 758 | # RabbitMQ message code "SIMULATION ENDS" |
|---|
| 759 | code=0100 |
|---|
| 760 | FlushAMQP=true |
|---|
| 761 | elif ( ${ExitFlag} ) ; then |
|---|
| 762 | # RabbitMQ message code "EXIT THE JOBS BECAUSE ERROR(S) HAS BEEN TRIGGERED" |
|---|
| 763 | code=1999 |
|---|
| 764 | FlushAMQP=true |
|---|
| 765 | else |
|---|
| 766 | # RabbitMQ message code "COMPUTING JOB ENDS" |
|---|
| 767 | code=1100 |
|---|
| 768 | fi |
|---|
| 769 | elif [ X${TaskType} = Xpost-processing ]; then |
|---|
| 770 | if ( ${ExitFlag} ) ; then |
|---|
| 771 | # RabbitMQ message code "POST-PROCESSING JOB FAILS" |
|---|
| 772 | code=2999 |
|---|
| 773 | FlushAMQP=true |
|---|
| 774 | else |
|---|
| 775 | # RabbitMQ message code "POST-PROCESSING JOB ENDS" |
|---|
| 776 | code=2100 |
|---|
| 777 | FlushAMQP=true |
|---|
| 778 | fi |
|---|
| 779 | elif [ X${TaskType} = Xchecking ]; then |
|---|
| 780 | if ( ${ExitFlag} ) ; then |
|---|
| 781 | # RabbitMQ message code "POST-PROCESSING JOB FAILS" |
|---|
| 782 | code=3999 |
|---|
| 783 | FlushAMQP=true |
|---|
| 784 | else |
|---|
| 785 | # RabbitMQ message code "POST-PROCESSING JOB ENDS" |
|---|
| 786 | code=3100 |
|---|
| 787 | FlushAMQP=true |
|---|
| 788 | fi |
|---|
| 789 | fi |
|---|
| 790 | # RabbitMQ message body |
|---|
| 791 | Body=$( echo "{${genericSimulationID},\"msgCode\":\"${code}\",\"msgUID\":\"$(uuidgen)\",\"msgTimestamp\":\"$( date +"%Y-%m-%dT%H:%M:%S.%N%z" )\"}" ) |
|---|
| 792 | # Fill the rabbitMQ queue |
|---|
| 793 | IGCM_debug_sendAMQP |
|---|
| 794 | fi |
|---|
| 795 | fi |
|---|
| 796 | |
|---|
| 797 | IGCM_debug_PopStack "IGCM_debug_BigBro_Finalize" |
|---|
| 798 | } |
|---|
| 799 | |
|---|
| 800 | #D-#================================================================== |
|---|
| 801 | #D-function IGCM_debug_Exit |
|---|
| 802 | #D-* Purpose: Print Call Stack and set ExitFlag to true |
|---|
| 803 | #D- |
|---|
| 804 | function IGCM_debug_Exit { |
|---|
| 805 | IGCM_debug_PushStack "IGCM_debug_Exit" |
|---|
| 806 | echo "IGCM_debug_Exit : " "${@}" |
|---|
| 807 | echo |
|---|
| 808 | echo "!!!!!!!!!!!!!!!!!!!!!!!!!!" |
|---|
| 809 | echo "!! ERROR TRIGGERED !!" |
|---|
| 810 | echo "!! EXIT FLAG SET !!" |
|---|
| 811 | echo "!------------------------!" |
|---|
| 812 | echo |
|---|
| 813 | IGCM_debug_CallStack |
|---|
| 814 | ExitFlag=true |
|---|
| 815 | IGCM_debug_PopStack "IGCM_debug_Exit" |
|---|
| 816 | } |
|---|
| 817 | |
|---|
| 818 | #D-#================================================== |
|---|
| 819 | #D-function IGCM_debug_Verif_Exit |
|---|
| 820 | #D-* Purpose: exit with number 1 if ExitFlag is true |
|---|
| 821 | #D- |
|---|
| 822 | function IGCM_debug_Verif_Exit { |
|---|
| 823 | if ( ${ExitFlag} ) ; then |
|---|
| 824 | echo "IGCM_debug_Verif_Exit : Something wrong happened previously." |
|---|
| 825 | echo "IGCM_debug_Verif_Exit : ERROR and EXIT keyword will help find out where." |
|---|
| 826 | # Only computing TaskType stops the job for now. |
|---|
| 827 | if [ X${TaskType} = Xcomputing ] ; then |
|---|
| 828 | IGCM_card_WriteOption ${SUBMIT_DIR}/run.card Configuration PeriodState "Fatal" |
|---|
| 829 | echo " EXIT THE JOB." |
|---|
| 830 | echo |
|---|
| 831 | IGCM_debug_CallStack |
|---|
| 832 | |
|---|
| 833 | # Mail notification |
|---|
| 834 | IGCM_sys_SendMail |
|---|
| 835 | |
|---|
| 836 | # Inform the rabbitMQ queue |
|---|
| 837 | IGCM_debug_BigBro_Finalize |
|---|
| 838 | |
|---|
| 839 | # And Good Bye |
|---|
| 840 | date |
|---|
| 841 | exit 1 |
|---|
| 842 | |
|---|
| 843 | elif [ X${TaskType} = Xpost-processing ] ; then |
|---|
| 844 | StopAll=false |
|---|
| 845 | # Test if we need to stop the computing job |
|---|
| 846 | case ${postProcessingName} in |
|---|
| 847 | atlas*|monitoring*|metrics*) |
|---|
| 848 | [ ${postProcessingStopLevel} -gt 2 ] && StopAll=true ;; |
|---|
| 849 | create_*) |
|---|
| 850 | [ ${postProcessingStopLevel} -gt 1 ] && StopAll=true ;; |
|---|
| 851 | rebuild*|pack_*) |
|---|
| 852 | [ ${postProcessingStopLevel} -gt 0 ] && StopAll=true ;; |
|---|
| 853 | esac |
|---|
| 854 | # Notify the computing job that something wrong happened and stop it. |
|---|
| 855 | ( ${StopAll} ) && IGCM_card_WriteOption ${SUBMIT_DIR}/run.card Configuration PeriodState "Fatal.${Script_Post_Output}" |
|---|
| 856 | |
|---|
| 857 | # If SpaceName is PROD we stop when post_processing failed |
|---|
| 858 | if [ X${config_UserChoices_SpaceName} = XPROD ] ; then |
|---|
| 859 | echo " EXIT THE POST-PROCESSING JOB." |
|---|
| 860 | echo |
|---|
| 861 | IGCM_debug_CallStack |
|---|
| 862 | |
|---|
| 863 | # Inform the rabbitMQ queue |
|---|
| 864 | IGCM_debug_BigBro_Finalize |
|---|
| 865 | |
|---|
| 866 | # And Good Bye |
|---|
| 867 | date |
|---|
| 868 | exit 1 |
|---|
| 869 | else |
|---|
| 870 | echo "In config.card the variable SpaceName is not in PROD" |
|---|
| 871 | echo " SO WE DO NOT EXIT THE JOB." |
|---|
| 872 | echo |
|---|
| 873 | date |
|---|
| 874 | fi |
|---|
| 875 | elif [ X${TaskType} = Xchecking ] ; then |
|---|
| 876 | echo "Nothing will happen for now" |
|---|
| 877 | fi |
|---|
| 878 | fi |
|---|
| 879 | } |
|---|
| 880 | |
|---|
| 881 | #D-#================================================================== |
|---|
| 882 | #D-function IGCM_debug_Print |
|---|
| 883 | #D-* Purpose: Print arguments according to a level of verbosity. |
|---|
| 884 | #D- |
|---|
| 885 | function IGCM_debug_Print |
|---|
| 886 | { |
|---|
| 887 | typeset level=$1 |
|---|
| 888 | shift |
|---|
| 889 | |
|---|
| 890 | if [ X"${1}" = X"-e" ]; then |
|---|
| 891 | typeset cmd_echo="echo -e" |
|---|
| 892 | shift |
|---|
| 893 | else |
|---|
| 894 | typeset cmd_echo="echo" |
|---|
| 895 | fi |
|---|
| 896 | |
|---|
| 897 | if [ ${level} -le ${Verbosity} ] ; then |
|---|
| 898 | typeset i |
|---|
| 899 | case "${level}" in |
|---|
| 900 | 1) for i in "$@" ; do |
|---|
| 901 | ${cmd_echo} $(date +"%Y-%m-%d %T") "--Debug1-->" ${i} |
|---|
| 902 | done ;; |
|---|
| 903 | 2) for i in "$@" ; do |
|---|
| 904 | ${cmd_echo} $(date +"%Y-%m-%d %T") "--------Debug2-->" ${i} |
|---|
| 905 | done ;; |
|---|
| 906 | 3) for i in "$@" ; do |
|---|
| 907 | ${cmd_echo} $(date +"%Y-%m-%d %T") "--------------Debug3-->" ${i} |
|---|
| 908 | done ;; |
|---|
| 909 | esac |
|---|
| 910 | fi |
|---|
| 911 | } |
|---|
| 912 | |
|---|
| 913 | #D-#================================================================== |
|---|
| 914 | #D-function IGCM_debug_PrintVariables |
|---|
| 915 | #D-* Purpose: Print arguments when match a pattern |
|---|
| 916 | #D- according to a level of verbosity. |
|---|
| 917 | function IGCM_debug_PrintVariables |
|---|
| 918 | { |
|---|
| 919 | typeset level=$1 |
|---|
| 920 | shift |
|---|
| 921 | |
|---|
| 922 | list=$( set | grep ^$1 | sed -e "s/'//g" ) |
|---|
| 923 | |
|---|
| 924 | if [ "X${list}" != X ] ; then |
|---|
| 925 | IGCM_debug_Print ${level} ${list} |
|---|
| 926 | fi |
|---|
| 927 | } |
|---|
| 928 | |
|---|
| 929 | #D-#================================================================== |
|---|
| 930 | #D-function IGCM_debug_PrintInfosActions |
|---|
| 931 | #D-* Purpose: Print information related to instrumentation |
|---|
| 932 | function IGCM_debug_PrintInfosActions |
|---|
| 933 | { |
|---|
| 934 | typeset actionType=$1 |
|---|
| 935 | typeset entitySize=$2 |
|---|
| 936 | typeset start_ms=$3 |
|---|
| 937 | typeset end_ms=$4 |
|---|
| 938 | |
|---|
| 939 | typeset dest=$5 |
|---|
| 940 | typeset source=$6 |
|---|
| 941 | |
|---|
| 942 | typeset diff_ms entitySizeKo entitySizeMo flux_Ko_ms flux_Ko_s flux_Mo_s |
|---|
| 943 | typeset dirFrom dirTo |
|---|
| 944 | |
|---|
| 945 | diff_ms=$(( $end_ms - $start_ms )) |
|---|
| 946 | # echo "diff_ms=$diff_ms" |
|---|
| 947 | |
|---|
| 948 | entitySizeKo=$( echo ${entitySize} | gawk -F"|" '{print $1}' ) |
|---|
| 949 | # echo "entitySizeKo=$entitySizeKo" |
|---|
| 950 | entitySizeMo=$( echo ${entitySize} | gawk -F"|" '{print $2}' ) |
|---|
| 951 | |
|---|
| 952 | # flux en Ko / ms |
|---|
| 953 | flux_Ko_ms=$( echo "scale=6;${entitySizeKo}/${diff_ms}" | bc ) |
|---|
| 954 | # echo "flux_Ko_ms=$flux_Ko_ms" |
|---|
| 955 | |
|---|
| 956 | # flux en Ko / s |
|---|
| 957 | flux_Ko_s=$(( $flux_Ko_ms * 1000 )) |
|---|
| 958 | # echo "flux_Ko_s=$flux_Ko_s" |
|---|
| 959 | |
|---|
| 960 | # flux en Mo / s |
|---|
| 961 | flux_Mo_s=$( echo "scale=6;${flux_Ko_s}/1024" | bc ) |
|---|
| 962 | # echo "flux_Mo_s=$flux_Mo_s" |
|---|
| 963 | |
|---|
| 964 | if [ -d $dest ] ; then |
|---|
| 965 | dirTo=$( readlink -f ${dest} ) |
|---|
| 966 | else |
|---|
| 967 | dirTo=$( readlink -f $( dirname ${dest} ) ) |
|---|
| 968 | fi |
|---|
| 969 | |
|---|
| 970 | if [ -d $source ] ; then |
|---|
| 971 | dirFrom=$( readlink -f ${source} ) |
|---|
| 972 | else |
|---|
| 973 | dirFrom=$( readlink -f $( dirname ${source} ) ) |
|---|
| 974 | fi |
|---|
| 975 | |
|---|
| 976 | instrumentationContent=$( echo "\"actionName\":\"${actionType}\",\"size_Mo\":\"${entitySizeMo}\",\"duration_ms\":\"${diff_ms}\",\"throughput_Mo_s\":\"${flux_Mo_s}\",\"dirFrom\":\"${dirFrom}\",\"dirTo\":\"${dirTo}\"" ) |
|---|
| 977 | |
|---|
| 978 | if [ X${ActivateStackFilling} = Xtrue ] ; then |
|---|
| 979 | echo "{${instrumentationContent}}" >> ${StackFileLocation}/${StackFileName} |
|---|
| 980 | fi |
|---|
| 981 | |
|---|
| 982 | # Inform the rabbitMQ queue |
|---|
| 983 | if [ X${ActivateBigBro} = Xtrue ] ; then |
|---|
| 984 | # RabbitMQ message body |
|---|
| 985 | Body=$( echo "{${genericSimulationID},\"msgCode\":\"7000\",\"msgUID\":\"$(uuidgen)\",${instrumentationContent},\"msgTimestamp\":\"$( date +"%Y-%m-%dT%H:%M:%S.%N%z" )\"}" ) |
|---|
| 986 | # Fill the rabbitMQ queue |
|---|
| 987 | IGCM_debug_sendAMQP |
|---|
| 988 | fi |
|---|
| 989 | } |
|---|
| 990 | |
|---|
| 991 | #D-#================================================================== |
|---|
| 992 | #D-function IGCM_debug_Check |
|---|
| 993 | #D- * Purpose: Check the present file by comparison with a reference file |
|---|
| 994 | function IGCM_debug_Check |
|---|
| 995 | { |
|---|
| 996 | #--------------------- |
|---|
| 997 | if [ ! -n "${libIGCM}" ] ; then |
|---|
| 998 | echo "Check libIGCM_debug ..........................................[ FAILED ]" |
|---|
| 999 | echo "--Error--> libIGCM variable is not defined" |
|---|
| 1000 | exit 2 |
|---|
| 1001 | fi |
|---|
| 1002 | |
|---|
| 1003 | #--------------------- |
|---|
| 1004 | if [ ! -n "${Verbosity}" ] ; then |
|---|
| 1005 | echo "Check libIGCM_debug ..........................................[ FAILED ]" |
|---|
| 1006 | echo "--Error--> Verbosity variable is not defined" |
|---|
| 1007 | exit 3 |
|---|
| 1008 | fi |
|---|
| 1009 | |
|---|
| 1010 | #--------------------- |
|---|
| 1011 | # Need to remove timestamps here |
|---|
| 1012 | diff ${libIGCM}/libIGCM_debug/IGCM_debug_Test.ref <(${libIGCM}/libIGCM_debug/IGCM_debug_Test.ksh | sed -e "s:[0-9][0-9][0-9][0-9]-[0-9][0-9]-[0-9][0-9] [0-9][0-9]\:[0-9][0-9]\:[0-9][0-9] ::g") > /dev/null 2>&1 |
|---|
| 1013 | status=$? |
|---|
| 1014 | |
|---|
| 1015 | if [ ${status} -eq 0 ] ; then |
|---|
| 1016 | echo "Check libIGCM_debug ..............................................[ OK ]" |
|---|
| 1017 | else |
|---|
| 1018 | echo "Check libIGCM_debug ..........................................[ FAILED ]" |
|---|
| 1019 | echo "--Error--> Execution of ${libIGCM}/libIGCM_debug/IGCM_debug_Test.ksh" |
|---|
| 1020 | echo " has produced the file IGCM_debug_Test.ref.failed" |
|---|
| 1021 | echo " Please analyse differences with the reference file by typing:" |
|---|
| 1022 | echo " diff IGCM_debug_Test.ref.failed ${libIGCM}/libIGCM_debug/IGCM_debug_Test.ref" |
|---|
| 1023 | echo " Report errors to the author: Patrick.Brockmann@cea.fr" |
|---|
| 1024 | diff ${libIGCM}/libIGCM_debug/IGCM_debug_Test.ref <(${libIGCM}/libIGCM_debug/IGCM_debug_Test.ksh | sed -e "s:[0-9][0-9][0-9][0-9]-[0-9][0-9]-[0-9][0-9] [0-9][0-9]\:[0-9][0-9]\:[0-9][0-9] ::g") |
|---|
| 1025 | exit 4 |
|---|
| 1026 | fi |
|---|
| 1027 | #--------------------- |
|---|
| 1028 | } |
|---|
