[2] | 1 | #!/bin/ksh |
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| 2 | |
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| 3 | #************************************************************** |
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| 4 | # Author: Martial Mancip |
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[373] | 5 | # Contact: Martial.Mancip__at__ipsl.jussieu.fr |
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| 6 | # $Revision:: $ Revision of last commit |
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| 7 | # $Author:: $ Author of last commit |
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| 8 | # $Date:: $ Date of last commit |
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[2] | 9 | # IPSL (2006) |
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| 10 | # This software is governed by the CeCILL licence see libIGCM/libIGCM_CeCILL.LIC |
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| 11 | # |
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| 12 | #************************************************************** |
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[912] | 13 | # bypass specific internationalization (for gawk) |
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[2] | 14 | export LC_ALL="C" |
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| 15 | |
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[725] | 16 | # By default, all libIGCM_sys save functions will protect output datas (RUN execution mode) |
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[128] | 17 | # other values : DEB(ug), DEV(elopment). |
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| 18 | JobType=${JobType:=RUN} |
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| 19 | |
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[831] | 20 | #==================================================== |
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| 21 | # set PackDefault false by default |
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| 22 | PackDefault=false |
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[128] | 23 | |
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[855] | 24 | #==================================================== |
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| 25 | # set BigBrother false by default |
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[989] | 26 | BigBrother=${BigBrother:=false} |
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[855] | 27 | |
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[983] | 28 | #==================================================== |
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| 29 | # set BigBrother channel (AMQP or MAIL) |
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| 30 | # only MAIL working at present due to firewall constraint |
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| 31 | BigBrotherChannel=MAIL |
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| 32 | |
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[831] | 33 | # no need to be so verbose in checking mode |
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| 34 | if [ ! X${TaskType} = Xchecking ] ; then |
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| 35 | echo |
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| 36 | echo "====================================================" |
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| 37 | echo "Where do we run ?" $( hostname ) |
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| 38 | uname -a |
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| 39 | echo "====================================================" |
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| 40 | echo |
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| 41 | fi |
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| 42 | |
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[129] | 43 | if [ X${JobType} = XDEB ] ; then |
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[128] | 44 | echo "DEBUG mode : activation of 'set -vx' mode." |
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| 45 | set -vx |
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| 46 | DEBUG_debug=true |
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| 47 | DEBUG_sys=true |
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| 48 | fi |
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| 49 | |
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[616] | 50 | #==================================================== |
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[1490] | 51 | |
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[2] | 52 | case $( hostname -s ) in |
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[771] | 53 | ada*) |
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[1391] | 54 | [ ! X${TaskType} = Xchecking ] && echo "Source machine dependent settings for ada Intel X-64." |
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[996] | 55 | CENTER=IDRIS |
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[1172] | 56 | SYSTEM=ada |
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[771] | 57 | . ${libIGCM}/libIGCM_sys/libIGCM_sys_ada.ksh;; |
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| 58 | curie*) |
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[1391] | 59 | [ ! X${TaskType} = Xchecking ] && echo "Source machine dependent settings for curie Intel X-64." |
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[996] | 60 | CENTER=TGCC |
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[1172] | 61 | SYSTEM=curie |
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[926] | 62 | . ${libIGCM}/libIGCM_sys/libIGCM_sys_curie.ksh;; |
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[1521] | 63 | irene*) |
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| 64 | if [ "${SLURM_JOB_PARTITION}" = "rome" ] || [ "$( hostname -s)" = "irene172" ] || [ "$( hostname -s)" = "irene173" ] || [ "$( hostname -s)" = "irene194" ] || [ "$( hostname -s)" = "irene195" ] ; then |
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| 65 | [ ! X${TaskType} = Xchecking ] && echo "Source machine dependent settings for irene_amd Intel X-64 at TGCC" |
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| 66 | CENTER=TGCC |
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| 67 | SYSTEM=irene-amd |
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| 68 | . ${libIGCM}/libIGCM_sys/libIGCM_sys_irene-amd.ksh |
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| 69 | else |
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| 70 | [ ! X${TaskType} = Xchecking ] && echo "Source machine dependent settings for irene Intel X-64 at TGCC" |
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| 71 | CENTER=TGCC |
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| 72 | SYSTEM=irene |
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| 73 | . ${libIGCM}/libIGCM_sys/libIGCM_sys_irene.ksh |
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| 74 | fi;; |
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[1062] | 75 | airain*) |
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[1391] | 76 | [ ! X${TaskType} = Xchecking ] && echo "Source machine dependent settings for airain Intel X-64." |
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[1062] | 77 | CENTER=TGCC |
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[1172] | 78 | SYSTEM=curie |
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[1062] | 79 | . ${libIGCM}/libIGCM_sys/libIGCM_sys_curie.ksh;; |
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[881] | 80 | asterix*|obelix*) |
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[1391] | 81 | [ ! X${TaskType} = Xchecking ] && echo "Source machine dependent settings for obelix or asterix." |
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[996] | 82 | CENTER=LSCE |
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[1568] | 83 | SYSTEM=obelix |
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[725] | 84 | . ${libIGCM}/libIGCM_sys/libIGCM_sys_obelix.ksh;; |
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[1558] | 85 | spiritx*) |
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| 86 | [ ! X${TaskType} = Xchecking ] && echo "Source machine dependent settings for spiritx at MESO ESPRI IPSL cluster." |
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| 87 | CENTER=spiritx |
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| 88 | SYSTEM=mesoipsl |
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| 89 | . ${libIGCM}/libIGCM_sys/libIGCM_sys_mesoipsl.ksh;; |
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| 90 | spirit*) |
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| 91 | [ ! X${TaskType} = Xchecking ] && echo "Source machine dependent settings for spirit at MESO ESPRI IPSL cluster." |
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| 92 | CENTER=spirit |
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| 93 | SYSTEM=mesoipsl |
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| 94 | . ${libIGCM}/libIGCM_sys/libIGCM_sys_mesoipsl.ksh;; |
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[1184] | 95 | ciclad*) |
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[1391] | 96 | [ ! X${TaskType} = Xchecking ] && echo "Source machine dependent settings for ciclad for running at ciclad." |
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[1314] | 97 | CENTER=IPSL-ciclad |
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[1184] | 98 | SYSTEM=ifort_CICLAD |
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| 99 | . ${libIGCM}/libIGCM_sys/libIGCM_sys_ciclad.ksh;; |
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[1314] | 100 | camelot*|loholt1*|loholt2*|merlin*) |
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[1391] | 101 | [ ! X${TaskType} = Xchecking ] && echo "Source machine dependent settings for ciclad for running at climserv." |
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[1314] | 102 | CENTER=IPSL-climserv |
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| 103 | SYSTEM=ifort_CICLAD |
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| 104 | . ${libIGCM}/libIGCM_sys/libIGCM_sys_ciclad.ksh;; |
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[428] | 105 | iitm*) |
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[1391] | 106 | [ ! X${TaskType} = Xchecking ] && echo "Source machine dependent settings for iitm." |
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[996] | 107 | CENTER=IITM |
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[1172] | 108 | SYSTEM=iitm |
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[725] | 109 | . ${libIGCM}/libIGCM_sys/libIGCM_sys_iitm.ksh;; |
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[141] | 110 | *) |
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[1490] | 111 | if [ "${SLURM_CLUSTER_NAME}" = "jean-zay" ] || [ "$( hostname -s | cut -c "1-8" )" = "jean-zay" ] ; then |
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| 112 | [ ! X${TaskType} = Xchecking ] && echo "Source machine dependent settings for Jean-Zay Intel X-64." |
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| 113 | CENTER=IDRIS |
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| 114 | SYSTEM=jeanzay |
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| 115 | . ${libIGCM}/libIGCM_sys/libIGCM_sys_jeanzay.ksh |
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| 116 | else |
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| 117 | [ ! X${TaskType} = Xchecking ] && echo "Source machine dependent settings for a default machine." |
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| 118 | CENTER=DEFAULT |
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| 119 | SYSTEM=default |
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| 120 | . ${libIGCM}/libIGCM_sys/libIGCM_sys_default.ksh |
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| 121 | fi;; |
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[368] | 122 | esac |
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| 123 | # Set default umask (umask is 0027 on some machines : CCRT machine at least) |
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| 124 | umask 0022 |
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[1181] | 125 | |
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| 126 | #D--------------------------------------------------------------------== |
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| 127 | #D- |
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| 128 | #D- Define IGCM_sys functions that are common on every systems |
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| 129 | #D- |
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| 130 | #D--------------------------------------------------------------------== |
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| 131 | |
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| 132 | #D-#================================================== |
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| 133 | #D-function IGCM_sys_RshMaster |
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| 134 | #D-* Purpose: Connection to frontend machine. |
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| 135 | #D-* Examples: |
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| 136 | #D- |
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| 137 | function IGCM_sys_RshMaster { |
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| 138 | IGCM_debug_PushStack "IGCM_sys_RshMaster" $@ |
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| 139 | OUTCOMMAND_PATH=${OUTCOMMAND_PATH} /bin/ksh <<-EOF |
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| 140 | export libIGCM=${libIGCM} |
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| 141 | export DEBUG_debug=${DEBUG_debug} |
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| 142 | . ${libIGCM}/libIGCM_debug/libIGCM_debug.ksh |
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| 143 | . ${libIGCM}/libIGCM_card/libIGCM_card.ksh |
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| 144 | ${@} |
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| 145 | EOF |
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| 146 | if [ $? -gt 0 ] ; then |
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| 147 | echo "IGCM_sys_RshMaster : erreur." |
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| 148 | IGCM_debug_Exit "IGCM_sys_RshMaster" |
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| 149 | fi |
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| 150 | IGCM_debug_PopStack "IGCM_sys_RshMaster" |
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| 151 | } |
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| 152 | |
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| 153 | #D-#================================================== |
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| 154 | #D-function IGCM_sys_RshPost |
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| 155 | #D-* Purpose: Post-process rsh command |
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| 156 | #D-* Examples: |
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| 157 | #D- |
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| 158 | function IGCM_sys_RshPost { |
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| 159 | IGCM_debug_PushStack "IGCM_sys_RshPost" $@ |
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| 160 | if ( $DEBUG_sys ) ; then |
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| 161 | echo "IGCM_sys_RshPost :" $@ |
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| 162 | fi |
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| 163 | # keep standard input (stdin) for the loop onto temporary file |
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| 164 | cat >${OUTCOMMAND_PATH}/tmp_IGCM_sys_RshPost_$$_${LOGNAME} |
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| 165 | |
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| 166 | OUTCOMMAND_PATH=${OUTCOMMAND_PATH} /bin/ksh <${OUTCOMMAND_PATH}/tmp_IGCM_sys_RshPost_$$_${LOGNAME} |
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| 167 | if [ $? -gt 0 ] ; then |
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| 168 | echo "IGCM_sys_RshPost : erreur." |
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| 169 | IGCM_debug_Exit "IGCM_sys_RshPost" |
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| 170 | fi |
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| 171 | # delete temporary file |
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| 172 | \rm ${OUTCOMMAND_PATH}/tmp_IGCM_sys_RshPost_$$_${LOGNAME} |
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| 173 | |
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| 174 | # ============ FRONTEND END ============ # |
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| 175 | |
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| 176 | # ============ CESIUM START ============ # |
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| 177 | # typeset NB_ESSAI DELAI status i |
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| 178 | # if [ "X$( grep rebuild_from tmp_IGCM_sys_RshPost_$$ )" != "X" ] ; then |
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| 179 | # #little hack so that rebuild submission is done on titane not an cesium |
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| 180 | # |
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| 181 | # libIGCM_POST_sed=$( echo $libIGCM_POST | sed 's/\//\\\//g' ) |
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| 182 | # POST_DIR_sed=$( echo ${POST_DIR} | sed 's/\//\\\//g' ) |
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| 183 | # sed "s/IGCM_sys_QsubPost/IGCM_sys_Qsub/g" tmp_IGCM_sys_RshPost_$$ > tmp.txt |
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| 184 | # sed "s/ rebuild_fromWorkdir/ ${libIGCM_POST_sed}\/rebuild_fromWorkdir.job/g" tmp.txt > tmp_IGCM_sys_RshPost_$$ |
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| 185 | # sed "s/ rebuild_fromArchive/ ${libIGCM_POST_sed}\/rebuild_fromArchive.job/g" tmp_IGCM_sys_RshPost_$$ > tmp.txt |
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| 186 | # sed "s/Script_Post_Output=/Script_Output=${POST_DIR_sed}\//g" tmp.txt > tmp_IGCM_sys_RshPost_$$ |
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| 187 | # \mv tmp.txt tmp_IGCM_sys_RshPost_$$ |
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| 188 | # |
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| 189 | # echo cat tmp_IGCM_sys_RshPost_$$ AFTER |
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| 190 | # cat tmp_IGCM_sys_RshPost_$$ |
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| 191 | # |
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| 192 | # /bin/ksh <tmp_IGCM_sys_RshPost_$$ |
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| 193 | # if [ $? -gt 0 ] ; then |
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| 194 | # echo "IGCM_sys_RshPost : erreur." |
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| 195 | # IGCM_debug_Exit "IGCM_sys_RshPost" |
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| 196 | # fi |
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| 197 | # # delete temporary file |
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| 198 | # \rm tmp_IGCM_sys_RshPost_$$ |
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| 199 | # |
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| 200 | # else |
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| 201 | # # number of tentative |
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| 202 | # NB_ESSAI=10 |
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| 203 | # # time delay between tentative |
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| 204 | # DELAI=10 |
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| 205 | # i=0 |
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| 206 | # while [ $i -ne $NB_ESSAI ] ; do |
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| 207 | # ssh -t titane996 ssh cesium /bin/ksh <tmp_IGCM_sys_RshPost_$$ |
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| 208 | # status=$? |
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| 209 | # if [ ${status} -ne 0 ]; |
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| 210 | # then |
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| 211 | # sleep $DELAI |
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| 212 | # else |
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| 213 | # break |
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| 214 | # fi |
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| 215 | # let i=$i+1 |
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| 216 | # done |
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| 217 | # # delete temporary file |
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| 218 | # \rm tmp_IGCM_sys_RshPost_$$ |
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| 219 | # |
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| 220 | # if [ ${status} -gt 0 ] ; then |
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| 221 | # echo "IGCM_sys_RshPost : erreur." |
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| 222 | # IGCM_debug_Exit "IGCM_sys_RshPost" |
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| 223 | # fi |
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| 224 | # fi |
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| 225 | |
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| 226 | # ============ CESIUM END ============ # |
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| 227 | |
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| 228 | IGCM_debug_PopStack "IGCM_sys_RshPost" |
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| 229 | } |
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| 230 | |
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| 231 | #D-#================================================== |
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| 232 | #D-function IGCM_sys_SendMail |
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| 233 | #D-* Purpose: Send mail when simulation is over |
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| 234 | #D-* Examples: |
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| 235 | #D- |
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| 236 | function IGCM_sys_SendMail { |
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| 237 | IGCM_debug_PushStack "IGCM_sys_SendMail" $@ |
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| 238 | if ( $DEBUG_sys ) ; then |
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| 239 | echo "IGCM_sys_SendMail :" $@ |
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| 240 | fi |
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| 241 | |
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| 242 | if [ X${1} = XAccounting ] ; then |
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| 243 | status=Accounting |
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| 244 | mailText=jobAccounting.mail |
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| 245 | elif ( ${ExitFlag} ) ; then |
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| 246 | status=failed |
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| 247 | mailText=jobEnd.mail |
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| 248 | else |
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| 249 | status=completed |
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| 250 | mailText=jobEnd.mail |
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| 251 | fi |
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| 252 | |
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| 253 | # Update selected mail template |
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| 254 | while read -r line; do |
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| 255 | eval echo $line >> mail.txt ; |
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| 256 | done < ${libIGCM}/libIGCM_sys/${mailText} |
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| 257 | |
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| 258 | if [ ! -z ${config_UserChoices_MailName} ] ; then |
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| 259 | mail -s "${config_UserChoices_JobName} ${status}" ${config_UserChoices_MailName} < mail.txt |
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| 260 | elif [ -f ~/.forward ] ; then |
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| 261 | mail -s "${config_UserChoices_JobName} ${status}" $( cat ~/.forward ) < mail.txt |
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| 262 | else |
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| 263 | mail -s "${config_UserChoices_JobName} ${status}" ${USER} < mail.txt |
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| 264 | fi |
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| 265 | |
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| 266 | sleep 10 |
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| 267 | rm -f mail.txt |
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| 268 | |
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| 269 | IGCM_debug_PopStack "IGCM_sys_SendMail" |
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| 270 | } |
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| 271 | |
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| 272 | #D-#================================================== |
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| 273 | #D-function IGCM_sys_Mkdir |
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| 274 | #D-* Purpose: Master locale mkdir command |
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| 275 | #D-* Examples: |
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| 276 | #D- |
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| 277 | function IGCM_sys_Mkdir { |
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| 278 | IGCM_debug_PushStack "IGCM_sys_Mkdir" $@ |
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| 279 | if ( $DEBUG_sys ) ; then |
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| 280 | echo "IGCM_sys_Mkdir :" $@ |
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| 281 | fi |
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| 282 | if [ ! -d ${1} ]; then |
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| 283 | \mkdir -p $1 |
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| 284 | if [ $? -gt 0 ] ; then |
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| 285 | echo "IGCM_sys_Mkdir : erreur." |
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| 286 | IGCM_debug_Exit "IGCM_sys_Mkdir" |
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| 287 | fi |
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| 288 | fi |
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| 289 | # vérification : |
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| 290 | if [ ! -d ${1} ] ; then |
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| 291 | echo "IGCM_sys_Mkdir : erreur." |
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| 292 | IGCM_debug_Exit "IGCM_sys_Mkdir" |
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| 293 | fi |
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| 294 | IGCM_debug_PopStack "IGCM_sys_Mkdir" |
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| 295 | } |
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| 296 | |
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| 297 | #D-#================================================== |
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| 298 | #D-function IGCM_sys_MkdirWork |
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| 299 | #D-* Purpose: Mkdir on Work |
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| 300 | #D-* Examples: |
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| 301 | #D- |
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| 302 | function IGCM_sys_MkdirWork { |
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| 303 | IGCM_debug_PushStack "IGCM_sys_MkdirWork" $@ |
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| 304 | if ( $DEBUG_sys ) ; then |
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| 305 | echo "IGCM_sys_MkdirWork :" $@ |
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| 306 | fi |
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| 307 | #- creation de repertoire sur le serveur fichier |
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| 308 | if [ ! -d ${1} ]; then |
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| 309 | \mkdir -p $1 |
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| 310 | if [ $? -gt 0 ] ; then |
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| 311 | echo "IGCM_sys_MkdirWork : erreur." |
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| 312 | IGCM_debug_Exit "IGCM_sys_MkdirWork" |
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| 313 | fi |
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| 314 | fi |
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| 315 | IGCM_debug_PopStack "IGCM_sys_MkdirWork" |
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| 316 | } |
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| 317 | |
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| 318 | #D-#================================================== |
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| 319 | #D-function IGCM_sys_Cd |
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| 320 | #D-* Purpose: master cd command |
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| 321 | #D-* Examples: |
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| 322 | #D- |
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| 323 | function IGCM_sys_Cd { |
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| 324 | IGCM_debug_PushStack "IGCM_sys_Cd" $@ |
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| 325 | if ( $DEBUG_sys ) ; then |
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| 326 | echo "IGCM_sys_Cd :" $@ |
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| 327 | fi |
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| 328 | \cd $1 |
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| 329 | if [ $? -gt 0 ] ; then |
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| 330 | echo "IGCM_sys_Cd : erreur." |
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| 331 | IGCM_debug_Exit "IGCM_sys_Cd" |
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| 332 | fi |
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| 333 | IGCM_debug_PopStack "IGCM_sys_Cd" |
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| 334 | } |
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| 335 | |
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| 336 | #D-#================================================== |
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| 337 | #D-function IGCM_sys_Chmod |
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| 338 | #D-* Purpose: Chmod |
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| 339 | #D-* Examples: |
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| 340 | #D- |
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| 341 | function IGCM_sys_Chmod { |
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| 342 | IGCM_debug_PushStack "IGCM_sys_Chmod" $@ |
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| 343 | if ( $DEBUG_sys ) ; then |
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| 344 | echo "IGCM_sys_Chmod :" $@ |
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| 345 | fi |
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| 346 | \chmod $@ |
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| 347 | if [ $? -gt 0 ] ; then |
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| 348 | echo "IGCM_sys_Chmod : erreur." |
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| 349 | IGCM_debug_Exit "IGCM_sys_Chmod" |
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| 350 | fi |
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| 351 | IGCM_debug_PopStack "IGCM_sys_Chmod" |
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| 352 | } |
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| 353 | |
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| 354 | #D-#================================================== |
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| 355 | #D-function IGCM_sys_FileSize |
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| 356 | #D-* Purpose: Filesize |
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| 357 | #D-* Examples: |
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| 358 | #D- |
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| 359 | function IGCM_sys_FileSize { |
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| 360 | IGCM_debug_PushStack "IGCM_sys_FileSize" $@ |
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| 361 | |
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| 362 | typeset sizeF |
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| 363 | set +A sizeF -- $( ls -la ${1} ) |
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| 364 | if [ $? -gt 0 ] ; then |
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| 365 | IGCM_debug_Exit "IGCM_sys_FileSize" |
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| 366 | fi |
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| 367 | eval ${2}=${sizeF[4]} |
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| 368 | |
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| 369 | IGCM_debug_PopStack "IGCM_sys_FileSize" |
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| 370 | } |
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| 371 | |
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| 372 | #D-#================================================== |
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| 373 | #D-function IGCM_sys_TestDir |
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| 374 | #D-* Purpose: Test Directory that must exists |
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| 375 | #D-* Examples: |
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| 376 | #D- |
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| 377 | function IGCM_sys_TestDir { |
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| 378 | IGCM_debug_PushStack "IGCM_sys_TestDir" $@ |
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| 379 | if ( $DEBUG_sys ) ; then |
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| 380 | echo "IGCM_sys_TestDir :" $@ |
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| 381 | fi |
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| 382 | typeset ExistFlag |
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| 383 | ExistFlag=$( [ -d $1 ] && echo 0 || echo 1 ) |
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| 384 | IGCM_debug_PopStack "IGCM_sys_TestDir" |
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| 385 | |
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| 386 | return ${ExistFlag} |
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| 387 | } |
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| 388 | |
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| 389 | #D-#================================================== |
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| 390 | #D-function IGCM_sys_TestFileBuffer |
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| 391 | #D-* Purpose: Test file that must NOT EXISTS on Buffer |
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| 392 | #D-* Examples: |
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| 393 | #D- |
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| 394 | function IGCM_sys_TestFileBuffer { |
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| 395 | IGCM_debug_PushStack "IGCM_sys_TestFileBuffer" $@ |
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| 396 | typeset ExistFlag |
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| 397 | ExistFlag=$( [ -f $1 ] && echo 0 || echo 1 ) |
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| 398 | IGCM_debug_PopStack "IGCM_sys_TestFileBuffer" |
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| 399 | |
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| 400 | return ${ExistFlag} |
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| 401 | } |
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| 402 | |
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| 403 | #D-#================================================== |
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| 404 | #D-function IGCM_sys_CountFileBuffer |
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| 405 | #D-* Purpose: Count files on Scratch filesystem |
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| 406 | #D-* Examples: |
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| 407 | #D- |
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| 408 | function IGCM_sys_CountFileBuffer { |
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| 409 | IGCM_debug_PushStack "IGCM_sys_CountFileBuffer" $@ |
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| 410 | ls ${@} 2>/dev/null | wc -l |
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| 411 | if [ $? -gt 0 ] ; then |
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| 412 | echo "IGCM_sys_CountFileBuffer : erreur." |
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| 413 | fi |
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| 414 | IGCM_debug_PopStack "IGCM_sys_CountFileBuffer" |
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| 415 | } |
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| 416 | |
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| 417 | #D-#================================================== |
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| 418 | #D-function IGCM_sys_Tar |
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| 419 | #D-* Purpose: master tar command |
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| 420 | #D-* Examples: |
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| 421 | #D- |
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| 422 | function IGCM_sys_Tar { |
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| 423 | IGCM_debug_PushStack "IGCM_sys_Tar" $@ |
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| 424 | if ( $DEBUG_sys ) ; then |
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| 425 | echo "IGCM_sys_Tar :" $@ |
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| 426 | fi |
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| 427 | \tar cf $@ |
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| 428 | if [ $? -gt 0 ] ; then |
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| 429 | echo "IGCM_sys_Tar : erreur." |
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| 430 | IGCM_debug_Exit "IGCM_sys_Tar" |
---|
| 431 | fi |
---|
| 432 | IGCM_debug_PopStack "IGCM_sys_Tar" |
---|
| 433 | } |
---|
| 434 | |
---|
| 435 | #D-#================================================== |
---|
| 436 | #D-function IGCM_sys_UnTar |
---|
| 437 | #D-* Purpose: master un-tar command |
---|
| 438 | #D-* Examples: |
---|
| 439 | #D- |
---|
| 440 | function IGCM_sys_UnTar { |
---|
| 441 | IGCM_debug_PushStack "IGCM_sys_UnTar" $@ |
---|
| 442 | if ( $DEBUG_sys ) ; then |
---|
| 443 | echo "IGCM_sys_UnTar :" $@ |
---|
| 444 | fi |
---|
| 445 | \tar xvf $1 |
---|
| 446 | if [ $? -gt 0 ] ; then |
---|
| 447 | echo "IGCM_sys_UnTar : erreur." |
---|
| 448 | IGCM_debug_Exit "IGCM_sys_UnTar" |
---|
| 449 | fi |
---|
| 450 | IGCM_debug_PopStack "IGCM_sys_UnTar" |
---|
| 451 | } |
---|
| 452 | |
---|
| 453 | #D-************************* |
---|
| 454 | #D- File transfer functions |
---|
| 455 | #D-************************* |
---|
| 456 | #D- |
---|
| 457 | |
---|
| 458 | #D-#================================================== |
---|
| 459 | #D-function IGCM_sys_Rsync_out |
---|
| 460 | #D-* Purpose: treat return val of rsync |
---|
| 461 | #D-* Examples: IGCM_sys_Rsync_out out_RET_rsync |
---|
| 462 | #D- Error values and explanations can depend on your system version. |
---|
| 463 | function IGCM_sys_Rsync_out { |
---|
| 464 | IGCM_debug_PushStack "IGCM_sys_Rsync_out" $@ |
---|
| 465 | if ( $DEBUG_sys ) ; then |
---|
| 466 | echo "IGCM_sys_UnTar :" $@ |
---|
| 467 | fi |
---|
| 468 | |
---|
| 469 | typeset status |
---|
| 470 | status=$1 |
---|
| 471 | |
---|
| 472 | if [ ! $status ] ; then |
---|
| 473 | IGCM_debug_Print 1 "IGCM_sys_Rsync_out need an argument" |
---|
| 474 | IGCM_debug_PopStack "IGCM_sys_Rsync_out" |
---|
| 475 | return |
---|
| 476 | fi |
---|
| 477 | |
---|
| 478 | case $status in |
---|
| 479 | 0) ;; |
---|
| 480 | 1) IGCM_debug_Print 1 "rsync error RERR_SYNTAX : Syntax or usage error";; |
---|
| 481 | 2) IGCM_debug_Print 1 "rsync error RERR_PROTOCOL : Protocol incompatibility";; |
---|
| 482 | 3) IGCM_debug_Print 1 "rsync error RERR_FILESELECT : Errors selecting input/output files, dirs";; |
---|
| 483 | 4) IGCM_debug_Print 1 "rsync error RERR_UNSUPPORTED : Requested action not supported." |
---|
| 484 | IGCM_debug_Print 1 "An attempt was made to manipulate 64-bit files on a platform that cannot support them" |
---|
| 485 | IGCM_debug_Print 1 "Or an option was specified that is supported by the client and not by the server.";; |
---|
| 486 | 5) IGCM_debug_Print 1 "rsync error : Error starting client-server protocol";; |
---|
| 487 | 10) IGCM_debug_Print 1 "rsync error RERR_SOCKETIO : Error in socket I/O";; |
---|
| 488 | 11) IGCM_debug_Print 1 "rsync error RERR_FILEIO: Error in file I/O";; |
---|
| 489 | 12) IGCM_debug_Print 1 "rsync error RERR_STREAMIO : Error in rsync protocol data stream";; |
---|
| 490 | 13) IGCM_debug_Print 1 "rsync error RERR_MESSAGEIO : Errors with program diagnostics";; |
---|
| 491 | 14) IGCM_debug_Print 1 "rsync error RERR_IPC : Error in IPC code";; |
---|
| 492 | 20) IGCM_debug_Print 1 "rsync error RERR_SIGNAL : Received SIGUSR1 or SIGINT";; |
---|
| 493 | 21) IGCM_debug_Print 1 "rsync error RERR_WAITCHILD : Some error returned by waitpid()";; |
---|
| 494 | 22) IGCM_debug_Print 1 "rsync error RERR_MALLOC : Error allocating core memory buffers";; |
---|
| 495 | 23) IGCM_debug_Print 1 "rsync error : Partial transfer due to error";; |
---|
| 496 | 24) IGCM_debug_Print 1 "rsync error : Partial transfer due to vanished source files";; |
---|
| 497 | 30) IGCM_debug_Print 1 "rsync error : Timeout in data send/receive";; |
---|
| 498 | *) IGCM_debug_Print 1 "rsync error : return code of rsync unknown :" $status;; |
---|
| 499 | esac |
---|
| 500 | |
---|
| 501 | IGCM_debug_PopStack "IGCM_sys_Rsync_out" |
---|
| 502 | } |
---|
| 503 | |
---|
| 504 | #D-#================================================== |
---|
| 505 | #D-function IGCM_sys_Miror_libIGCM |
---|
| 506 | #D-* Purpose: Mirror libIGCM PATH and lib to frontend |
---|
| 507 | #D-* Examples: |
---|
| 508 | #D- |
---|
| 509 | function IGCM_sys_Mirror_libIGCM { |
---|
| 510 | IGCM_debug_PushStack "IGCM_sys_Mirror_libIGCM" |
---|
| 511 | if ( $DEBUG_sys ) ; then |
---|
| 512 | echo "IGCM_sys_Mirror_libIGCM" |
---|
| 513 | fi |
---|
| 514 | |
---|
| 515 | typeset status |
---|
| 516 | |
---|
| 517 | mkdir -p ${HOME}/MIRROR/${PATHlibIGCM} |
---|
| 518 | |
---|
| 519 | echo ${RSYNC} ${RSYNC_opt} ${libIGCM} ${HOME}/MIRROR/${PATHlibIGCM} > ${OUTCOMMAND_PATH}/out_command_${LOGIN}.$$ 2>&1 |
---|
| 520 | ${RSYNC} ${RSYNC_opt} ${libIGCM} ${HOME}/MIRROR/${PATHlibIGCM} >> ${OUTCOMMAND_PATH}/out_command_${LOGIN}.$$ 2>&1 |
---|
| 521 | status=$? |
---|
| 522 | |
---|
| 523 | if [ ${status} -gt 0 ] ; then |
---|
| 524 | echo "IGCM_sys_Mirror_libIGCM Warning : no libIGCM on frontend." |
---|
| 525 | cat ${OUTCOMMAND_PATH}/out_command_${LOGIN}.$$ |
---|
| 526 | fi |
---|
| 527 | IGCM_debug_PopStack "IGCM_sys_Mirror_libIGCM" |
---|
| 528 | } |
---|
| 529 | |
---|
| 530 | #D-#================================================== |
---|
| 531 | #D-function IGCM_sys_Cp |
---|
| 532 | #D-* Purpose: generic cp |
---|
| 533 | #D-* Examples: |
---|
| 534 | #D- |
---|
| 535 | function IGCM_sys_Cp { |
---|
| 536 | IGCM_debug_PushStack "IGCM_sys_Cp" $@ |
---|
| 537 | if ( $DEBUG_sys ) ; then |
---|
| 538 | echo "IGCM_sys_Cp :" $@ |
---|
| 539 | fi |
---|
| 540 | |
---|
| 541 | typeset status |
---|
| 542 | |
---|
| 543 | echo cp $@ > ${OUTCOMMAND_PATH}/out_command_${LOGIN}.$$ 2>&1 |
---|
| 544 | \cp $@ >> ${OUTCOMMAND_PATH}/out_command_${LOGIN}.$$ 2>&1 |
---|
| 545 | status=$? |
---|
| 546 | |
---|
| 547 | if [ ${status} -gt 0 ] ; then |
---|
| 548 | echo "IGCM_sys_Cp : error code ${status}" |
---|
| 549 | cat ${OUTCOMMAND_PATH}/out_command_${LOGIN}.$$ |
---|
| 550 | IGCM_debug_Exit "IGCM_sys_Cp" |
---|
| 551 | else |
---|
| 552 | \rm ${OUTCOMMAND_PATH}/out_command_${LOGIN}.$$ |
---|
| 553 | fi |
---|
| 554 | IGCM_debug_PopStack "IGCM_sys_Cp" |
---|
| 555 | } |
---|
| 556 | |
---|
| 557 | #D-#================================================== |
---|
| 558 | #D-function IGCM_sys_Rm |
---|
| 559 | #D-* Purpose: generic rm |
---|
| 560 | #D-* Examples: |
---|
| 561 | #D- |
---|
| 562 | function IGCM_sys_Rm { |
---|
| 563 | IGCM_debug_PushStack "IGCM_sys_Rm" $@ |
---|
| 564 | if ( $DEBUG_sys ) ; then |
---|
| 565 | echo "IGCM_sys_Rm :" $@ |
---|
| 566 | fi |
---|
| 567 | |
---|
| 568 | typeset status |
---|
| 569 | |
---|
| 570 | echo rm $@ > ${OUTCOMMAND_PATH}/out_command_${LOGIN}.$$ 2>&1 |
---|
| 571 | \rm $@ >> ${OUTCOMMAND_PATH}/out_command_${LOGIN}.$$ 2>&1 |
---|
| 572 | status=$? |
---|
| 573 | |
---|
| 574 | if [ ${status} -gt 0 ] ; then |
---|
| 575 | echo "IGCM_sys_Rm : error code ${status}" |
---|
| 576 | cat ${OUTCOMMAND_PATH}/out_command_${LOGIN}.$$ |
---|
| 577 | IGCM_debug_Exit "IGCM_sys_Rm" |
---|
| 578 | else |
---|
| 579 | \rm ${OUTCOMMAND_PATH}/out_command_${LOGIN}.$$ |
---|
| 580 | fi |
---|
| 581 | IGCM_debug_PopStack "IGCM_sys_Rm" |
---|
| 582 | } |
---|
| 583 | |
---|
| 584 | #D-#================================================== |
---|
| 585 | #D-function IGCM_sys_Mv |
---|
| 586 | #D-* Purpose: generic move |
---|
| 587 | #D-* Examples: |
---|
| 588 | #D- |
---|
| 589 | function IGCM_sys_Mv { |
---|
| 590 | IGCM_debug_PushStack "IGCM_sys_Mv" $@ |
---|
| 591 | if ( $DEBUG_sys ) ; then |
---|
| 592 | echo "IGCM_sys_Mv :" $@ |
---|
| 593 | fi |
---|
| 594 | |
---|
| 595 | if [ $DRYRUN = 0 ]; then |
---|
| 596 | |
---|
| 597 | typeset status |
---|
| 598 | |
---|
| 599 | echo mv $@ > ${OUTCOMMAND_PATH}/out_command_${LOGIN}.$$ 2>&1 |
---|
| 600 | \mv $@ >> ${OUTCOMMAND_PATH}/out_command_${LOGIN}.$$ 2>&1 |
---|
| 601 | status=$? |
---|
| 602 | |
---|
| 603 | if [ ${status} -gt 0 ] ; then |
---|
| 604 | echo "IGCM_sys_Mv : error code ${status}" |
---|
| 605 | cat ${OUTCOMMAND_PATH}/out_command_${LOGIN}.$$ |
---|
| 606 | IGCM_debug_Exit "IGCM_sys_Mv" |
---|
| 607 | else |
---|
| 608 | \rm ${OUTCOMMAND_PATH}/out_command_${LOGIN}.$$ |
---|
| 609 | fi |
---|
| 610 | fi |
---|
| 611 | IGCM_debug_PopStack "IGCM_sys_Mv" |
---|
| 612 | } |
---|
| 613 | |
---|
| 614 | #D-#================================================== |
---|
| 615 | #D-function IGCM_sys_Get_Master |
---|
| 616 | #D-* Purpose: Copy a complete directory from MASTER filesystem |
---|
| 617 | #D-* Examples: |
---|
| 618 | #D- |
---|
| 619 | function IGCM_sys_Get_Master { |
---|
| 620 | IGCM_debug_PushStack "IGCM_sys_Get_Master" $@ |
---|
| 621 | if ( $DEBUG_sys ) ; then |
---|
| 622 | echo "IGCM_sys_Get_Master :" $@ |
---|
| 623 | fi |
---|
| 624 | if [ $DRYRUN = 0 ]; then |
---|
| 625 | if ( [ ! -d ${1} ] && [ ! -f ${1} ] ) ; then |
---|
| 626 | echo "WARNING : IGCM_sys_Get_Master ${1} DOES NOT EXIST ." |
---|
| 627 | IGCM_debug_PopStack "IGCM_sys_Get_Master" |
---|
| 628 | return |
---|
| 629 | fi |
---|
| 630 | |
---|
| 631 | typeset NB_ESSAI DELAI status i |
---|
| 632 | # number of tentative |
---|
| 633 | NB_ESSAI=3 |
---|
| 634 | # time delay between tentative |
---|
| 635 | DELAI=2 |
---|
| 636 | |
---|
| 637 | i=0 |
---|
| 638 | while [ $i -lt $NB_ESSAI ] ; do |
---|
| 639 | \cp -urL $1 $2 > ${OUTCOMMAND_PATH}/out_command_${LOGIN}.$$ 2>&1 |
---|
| 640 | status=$? |
---|
| 641 | if [ ${status} -gt 0 ]; then |
---|
| 642 | IGCM_debug_Print 2 "IGCM_sys_Get_Master : cp failed error code ${status} ${i}/${NB_ESSAI}" |
---|
| 643 | IGCM_debug_Print 2 "IGCM_sys_Get_Master : sleep ${DELAI} seconds and try again." |
---|
| 644 | sleep $DELAI |
---|
| 645 | else |
---|
| 646 | break |
---|
| 647 | fi |
---|
| 648 | (( i = i + 1 )) |
---|
| 649 | done |
---|
| 650 | |
---|
| 651 | if [ ${status} -gt 0 ] ; then |
---|
| 652 | echo "IGCM_sys_Get_Master : error." |
---|
| 653 | cat ${OUTCOMMAND_PATH}/out_command_${LOGIN}.$$ |
---|
| 654 | IGCM_debug_Exit "IGCM_sys_Get_Master" |
---|
| 655 | else |
---|
| 656 | \rm ${OUTCOMMAND_PATH}/out_command_${LOGIN}.$$ |
---|
| 657 | fi |
---|
| 658 | fi |
---|
| 659 | IGCM_debug_PopStack "IGCM_sys_Get_Master" |
---|
| 660 | } |
---|
| 661 | |
---|
| 662 | #==================================================== |
---|
| 663 | #- Call IGCM_sys_Mirror_libIGCM now ! |
---|
| 664 | if ( $MirrorlibIGCM ) ; then |
---|
| 665 | IGCM_sys_Mirror_libIGCM |
---|
| 666 | fi |
---|
| 667 | |
---|
| 668 | #D-#================================================== |
---|
| 669 | #D-function IGCM_sys_PutBuffer_Rest |
---|
| 670 | #D-* Purpose: Put computied restarts on ${SCRATCHDIR}. |
---|
| 671 | #D- File and target directory must exist. |
---|
| 672 | #D-* Examples: |
---|
| 673 | #D- |
---|
| 674 | function IGCM_sys_PutBuffer_Rest { |
---|
| 675 | IGCM_debug_PushStack "IGCM_sys_PutBuffer_Rest" $@ |
---|
| 676 | if ( $DEBUG_sys ) ; then |
---|
| 677 | echo "IGCM_sys_PutBuffer_Rest :" $@ |
---|
| 678 | fi |
---|
[1624] | 679 | |
---|
[1181] | 680 | if [ $DRYRUN = 0 ]; then |
---|
| 681 | if [ ! -f ${1} ] ; then |
---|
[1624] | 682 | # The file is missing |
---|
| 683 | if [ X${3} = X'OPTIONAL' ] ; then |
---|
| 684 | echo "WARINING : IGCM_sys_PutBuffer_Rest ${1} DOES NOT EXIST ." |
---|
| 685 | IGCM_debug_Print 1 "IGCM_sys_PutBuffer_Rest: Optional restart file ${1} is missing, now continue." |
---|
| 686 | else |
---|
| 687 | echo "ERROR : IGCM_sys_PutBuffer_Rest ${1} DOES NOT EXIST ." |
---|
| 688 | IGCM_debug_Exit "IGCM_sys_PutBuffer_Rest" |
---|
| 689 | fi |
---|
| 690 | |
---|
[1181] | 691 | else |
---|
[1624] | 692 | # The file exist |
---|
| 693 | typeset status |
---|
| 694 | # |
---|
| 695 | # USUAL WAY |
---|
| 696 | \cp $1 $2 > ${OUTCOMMAND_PATH}/out_command_${LOGIN}.$$ 2>&1 |
---|
| 697 | status=$? |
---|
[1181] | 698 | |
---|
[1624] | 699 | if [ ${status} -gt 0 ] ; then |
---|
| 700 | echo "IGCM_sys_PutBuffer_Rest : error code ${status}" |
---|
| 701 | [ -f ${2} ] && ls -l ${2} |
---|
| 702 | [ -f ${2}/${1} ] && ls -l ${2}/${1} |
---|
| 703 | cat ${OUTCOMMAND_PATH}/out_command_${LOGIN}.$$ |
---|
| 704 | IGCM_debug_Exit "IGCM_sys_PutBuffer_Rest" |
---|
| 705 | else |
---|
| 706 | if [ X${JobType} = XRUN ] ; then |
---|
| 707 | [ -f ${2} ] && IGCM_sys_Chmod 444 ${2} |
---|
| 708 | [ -f ${2}/${1} ] && IGCM_sys_Chmod 444 ${2}/${1} |
---|
| 709 | fi |
---|
| 710 | \rm ${OUTCOMMAND_PATH}/out_command_${LOGIN}.$$ |
---|
[1181] | 711 | fi |
---|
| 712 | fi |
---|
| 713 | fi |
---|
| 714 | IGCM_debug_PopStack "IGCM_sys_PutBuffer_Rest" |
---|
| 715 | } |
---|
| 716 | |
---|
| 717 | #D-#================================================== |
---|
| 718 | #D-function IGCM_sys_PrepareTaredRestart |
---|
| 719 | #D-* Purpose: Prepare tared restart to be access by computing job. |
---|
| 720 | #D-* Examples: |
---|
| 721 | #D- |
---|
| 722 | function IGCM_sys_PrepareTaredRestart { |
---|
| 723 | IGCM_debug_PushStack "IGCM_sys_PrepareTaredRestart" $@ |
---|
| 724 | if [ $DRYRUN = 0 ]; then |
---|
| 725 | [ ! -f $( basename $1 ) ] && IGCM_sys_Get $1 . |
---|
| 726 | fi |
---|
| 727 | IGCM_debug_PopStack "IGCM_sys_PrepareTaredRestart" |
---|
| 728 | } |
---|
| 729 | |
---|
| 730 | #D-#================================================== |
---|
| 731 | #D-function IGCM_sys_PutBuffer_Out |
---|
| 732 | #D-* Purpose: Copy a file on the buffer filesystem after having chmod it in readonly |
---|
| 733 | #D-* Examples: |
---|
| 734 | #D- |
---|
| 735 | function IGCM_sys_PutBuffer_Out { |
---|
| 736 | IGCM_debug_PushStack "IGCM_sys_PutBuffer_Out" $@ |
---|
| 737 | if ( $DEBUG_sys ) ; then |
---|
| 738 | echo "IGCM_sys_PutBuffer_Out :" $@ |
---|
| 739 | fi |
---|
| 740 | |
---|
| 741 | typeset NB_ESSAI DELAI status i exist skip |
---|
[1234] | 742 | typeset fileDeviceNumberInHex directoryDeviceNumberInHex |
---|
[1181] | 743 | |
---|
| 744 | # number of tentative |
---|
| 745 | NB_ESSAI=3 |
---|
| 746 | # time delay between tentative |
---|
| 747 | DELAI=2 |
---|
| 748 | |
---|
| 749 | if [ $DRYRUN = 0 ]; then |
---|
| 750 | if [ ! -f ${1} ] ; then |
---|
| 751 | echo "WARNING : IGCM_sys_PutBuffer_Out ${1} DOES NOT EXIST ." |
---|
| 752 | IGCM_debug_PopStack "IGCM_sys_PutBuffer_Out" |
---|
| 753 | return 1 |
---|
| 754 | fi |
---|
| 755 | # |
---|
| 756 | IGCM_sys_Mkdir $( dirname $2 ) |
---|
| 757 | # |
---|
| 758 | |
---|
| 759 | exist=false |
---|
| 760 | skip=false |
---|
| 761 | if [ -f $2 ] ; then |
---|
| 762 | IGCM_debug_Print 1 "$2 already exist" |
---|
| 763 | exist=true |
---|
| 764 | if [ "X$( diff $1 $2 )" = X ] ; then |
---|
| 765 | IGCM_debug_Print 2 "$1 and $2 are the same file, we skip the copy" |
---|
| 766 | status=0 |
---|
| 767 | skip=true |
---|
| 768 | else |
---|
| 769 | IGCM_debug_Print 2 "$1 and $2 are not the same file, we force the copy" |
---|
| 770 | skip=false |
---|
| 771 | fi |
---|
| 772 | fi |
---|
| 773 | # |
---|
| 774 | if ( [ X${exist} = Xtrue ] && [ X${skip} = Xfalse ] ) ; then |
---|
| 775 | IGCM_sys_Chmod u+w $2 |
---|
| 776 | fi |
---|
| 777 | |
---|
| 778 | if [ X${skip} = Xfalse ] ; then |
---|
| 779 | i=0 |
---|
| 780 | while [ $i -lt $NB_ESSAI ] ; do |
---|
[1234] | 781 | # Identify file system |
---|
| 782 | fileDeviceNumberInHex=$( stat -c %d $1 ) |
---|
| 783 | status=$? |
---|
| 784 | if [ ${status} -gt 0 ] ; then |
---|
| 785 | IGCM_debug_Exit "IGCM_sys_PutBuffer_Out" |
---|
| 786 | fi |
---|
| 787 | # Identify file system |
---|
| 788 | directoryDeviceNumberInHex=$( stat -c %d $( dirname $2 ) ) |
---|
| 789 | status=$? |
---|
| 790 | if [ ${status} -gt 0 ] ; then |
---|
| 791 | IGCM_debug_Exit "IGCM_sys_PutBuffer_Out" |
---|
| 792 | fi |
---|
| 793 | |
---|
| 794 | if [ ${fileDeviceNumberInHex} -ne ${directoryDeviceNumberInHex} ] ; then |
---|
| 795 | # They are not on the same device. USUAL WAY |
---|
[1181] | 796 | \cp $1 $2 > ${OUTCOMMAND_PATH}/out_command_${LOGIN}.$$ 2>&1 |
---|
| 797 | status=$? |
---|
| 798 | else |
---|
[1234] | 799 | # They are on the same device. USUAL WAY |
---|
[1181] | 800 | \mv $1 $2 > ${OUTCOMMAND_PATH}/out_command_${LOGIN}.$$ 2>&1 |
---|
| 801 | status=$? |
---|
| 802 | fi |
---|
| 803 | if [ ${status} -gt 0 ]; then |
---|
| 804 | IGCM_debug_Print 2 "IGCM_sys_PutBuffer_Out : cp failed error code ${status} ${i}/${NB_ESSAI}" |
---|
| 805 | IGCM_debug_Print 2 "IGCM_sys_PutBuffer_Out : sleep ${DELAI} seconds and try again." |
---|
| 806 | [ -f ${2} ] && ls -l ${2} |
---|
| 807 | [ -f ${2}/${1} ] && ls -l ${2}/${1} |
---|
| 808 | sleep $DELAI |
---|
| 809 | else |
---|
| 810 | break |
---|
| 811 | fi |
---|
| 812 | (( i = i + 1 )) |
---|
| 813 | done |
---|
| 814 | fi |
---|
| 815 | |
---|
| 816 | if [ ${status} -gt 0 ] ; then |
---|
| 817 | echo "IGCM_sys_PutBuffer_Out : error." |
---|
| 818 | [ -f ${2} ] && ls -l ${2} |
---|
| 819 | [ -f ${2}/${1} ] && ls -l ${2}/${1} |
---|
| 820 | cat ${OUTCOMMAND_PATH}/out_command_${LOGIN}.$$ |
---|
| 821 | IGCM_debug_Exit "IGCM_sys_PutBuffer_Out" |
---|
| 822 | else |
---|
| 823 | |
---|
| 824 | if [ X${JobType} = XRUN ] ; then |
---|
| 825 | if [ X${3} = X ] ; then |
---|
| 826 | [ -f ${2} ] && IGCM_sys_Chmod 444 ${2} |
---|
| 827 | [ -f ${2}/${1} ] && IGCM_sys_Chmod 444 ${2}/${1} |
---|
| 828 | fi |
---|
| 829 | fi |
---|
| 830 | |
---|
| 831 | \rm ${OUTCOMMAND_PATH}/out_command_${LOGIN}.$$ |
---|
| 832 | fi |
---|
| 833 | fi |
---|
| 834 | IGCM_debug_PopStack "IGCM_sys_PutBuffer_Out" |
---|
| 835 | return 0 |
---|
| 836 | } |
---|
| 837 | |
---|
| 838 | #D-#================================================== |
---|
| 839 | #D-function IGCM_sys_GetBuffer |
---|
| 840 | #D-* Purpose: Get a file from ${SCRATCHDIR} |
---|
| 841 | #D-* Examples: IGCM_sys_GetBuffer myfile /destpath/myfile_with_PREFIX |
---|
| 842 | #D- IGCM_sys_GetBuffer /l Array_contain_myfiles /destpath/ |
---|
| 843 | function IGCM_sys_GetBuffer { |
---|
| 844 | IGCM_debug_PushStack "IGCM_sys_GetBuffer" $@ |
---|
| 845 | |
---|
| 846 | typeset DEST buf_liste target file_work |
---|
| 847 | typeset NB_ESSAI DELAI status i |
---|
| 848 | |
---|
| 849 | if ( $DEBUG_sys ) ; then |
---|
| 850 | echo "IGCM_sys_GetBuffer :" $@ |
---|
| 851 | fi |
---|
| 852 | |
---|
| 853 | # number of tentative |
---|
| 854 | NB_ESSAI=3 |
---|
| 855 | # time delay between tentative |
---|
| 856 | DELAI=2 |
---|
| 857 | |
---|
| 858 | if [ $DRYRUN -le 2 ]; then |
---|
| 859 | if [ X${1} = X'/l' ] ; then |
---|
| 860 | eval set +A buf_liste \${${2}} |
---|
| 861 | else |
---|
| 862 | eval set +A buf_liste ${1} |
---|
| 863 | fi |
---|
| 864 | eval DEST=\${${#}} |
---|
| 865 | |
---|
| 866 | #USUAL WAY |
---|
| 867 | if [ X${1} = X'/l' ] ; then |
---|
| 868 | for target in ${buf_liste[*]} ; do |
---|
| 869 | local_file=$( basename ${target} ) |
---|
| 870 | i=0 |
---|
| 871 | while [ $i -lt $NB_ESSAI ] ; do |
---|
| 872 | \cp ${target} ${DEST}/${local_file} >> ${OUTCOMMAND_PATH}/out_command_${LOGIN}.$$ 2>&1 |
---|
| 873 | status=$? |
---|
| 874 | if [ ${status} -gt 0 ]; then |
---|
| 875 | IGCM_debug_Print 2 "IGCM_sys_GetBuffer : cp failed error code ${status} ${i}/${NB_ESSAI}" |
---|
| 876 | IGCM_debug_Print 2 "IGCM_sys_GetBuffer : sleep ${DELAI} seconds and try again." |
---|
| 877 | sleep $DELAI |
---|
| 878 | else |
---|
| 879 | break |
---|
| 880 | fi |
---|
| 881 | (( i = i + 1 )) |
---|
| 882 | done |
---|
| 883 | if [ ${status} -gt 0 ] ; then |
---|
| 884 | echo "IGCM_sys_Get : error" |
---|
| 885 | cat ${OUTCOMMAND_PATH}/out_command_${LOGIN}.$$ |
---|
| 886 | \rm ${OUTCOMMAND_PATH}/out_command_${LOGIN}.$$ |
---|
| 887 | IGCM_debug_Exit "IGCM_sys_GetBuffer" |
---|
| 888 | else |
---|
| 889 | \rm ${OUTCOMMAND_PATH}/out_command_${LOGIN}.$$ |
---|
| 890 | fi |
---|
| 891 | done |
---|
| 892 | else |
---|
| 893 | i=0 |
---|
| 894 | while [ $i -lt $NB_ESSAI ] ; do |
---|
| 895 | \cp ${buf_liste} ${DEST} >> ${OUTCOMMAND_PATH}/out_command_${LOGIN}.$$ 2>&1 |
---|
| 896 | status=$? |
---|
| 897 | if [ ${status} -gt 0 ]; then |
---|
| 898 | IGCM_debug_Print 2 "IGCM_sys_GetBuffer : cp failed error code ${status} ${i}/${NB_ESSAI}" |
---|
| 899 | IGCM_debug_Print 2 "IGCM_sys_GetBuffer : sleep ${DELAI} seconds and try again." |
---|
| 900 | sleep $DELAI |
---|
| 901 | else |
---|
| 902 | break |
---|
| 903 | fi |
---|
| 904 | (( i = i + 1 )) |
---|
| 905 | done |
---|
| 906 | if [ ${status} -gt 0 ] ; then |
---|
| 907 | echo "IGCM_sys_Get : error" |
---|
| 908 | cat ${OUTCOMMAND_PATH}/out_command_${LOGIN}.$$ |
---|
| 909 | \rm ${OUTCOMMAND_PATH}/out_command_${LOGIN}.$$ |
---|
| 910 | IGCM_debug_Exit "IGCM_sys_GetBuffer" |
---|
| 911 | else |
---|
| 912 | \rm ${OUTCOMMAND_PATH}/out_command_${LOGIN}.$$ |
---|
| 913 | fi |
---|
| 914 | fi |
---|
| 915 | fi |
---|
| 916 | IGCM_debug_PopStack "IGCM_sys_GetBuffer" |
---|
| 917 | } |
---|
| 918 | |
---|
| 919 | #D-#================================================== |
---|
| 920 | #D-function IGCM_sys_GetDate_FichWork |
---|
| 921 | #D-* Purpose: donne la date filesys d'un fichier sur le filesystem WORK |
---|
| 922 | #D-* Examples: |
---|
| 923 | #D- |
---|
| 924 | function IGCM_sys_GetDate_FichWork { |
---|
| 925 | IGCM_debug_PushStack "IGCM_sys_GetDate_FichWork" $@ |
---|
| 926 | if ( $DEBUG_sys ) ; then |
---|
| 927 | echo "IGCM_sys_GetDate_FichWork :" $@ |
---|
| 928 | fi |
---|
| 929 | |
---|
| 930 | if [ $# -ge 3 ] ; then |
---|
| 931 | mode=$3 |
---|
| 932 | TimeStyle=$4 |
---|
| 933 | else |
---|
| 934 | mode="default" |
---|
| 935 | TimeStyle="%Y%m%d%H%M%S" |
---|
| 936 | fi |
---|
| 937 | |
---|
| 938 | typeset dateF |
---|
| 939 | set +A dateF -- $( ls -l --full-time --time-style=+"${TimeStyle}" ${1} ) |
---|
| 940 | |
---|
| 941 | case $mode in |
---|
| 942 | "default") |
---|
| 943 | eval ${2}=${dateF[5]} |
---|
| 944 | ;; |
---|
| 945 | "SplitFields") |
---|
| 946 | eval ${2}="${dateF[5]}\ ${dateF[6]}" |
---|
| 947 | ;; |
---|
| 948 | esac |
---|
| 949 | |
---|
| 950 | # donne la date filesys d'un fichier sur la machine work |
---|
| 951 | IGCM_debug_PopStack "IGCM_sys_GetDate_FichWork" |
---|
| 952 | } |
---|
| 953 | |
---|
| 954 | #D-#================================================== |
---|
| 955 | #D-function IGCM_sys_rebuild |
---|
| 956 | #D-* Purpose: rebuild parallel files |
---|
| 957 | #D-* Examples: |
---|
| 958 | #D- |
---|
| 959 | function IGCM_sys_rebuild { |
---|
| 960 | IGCM_debug_PushStack "IGCM_sys_rebuild" $@ |
---|
| 961 | if ( $DEBUG_sys ) ; then |
---|
| 962 | echo "IGCM_sys_rebuild :" $@ |
---|
| 963 | fi |
---|
| 964 | |
---|
| 965 | typeset NB_ESSAI DELAI status i firstArg |
---|
| 966 | # number of tentative |
---|
| 967 | NB_ESSAI=3 |
---|
| 968 | # time delay between tentative |
---|
| 969 | DELAI=2 |
---|
| 970 | |
---|
| 971 | i=0 |
---|
| 972 | while [ $i -lt $NB_ESSAI ] ; do |
---|
| 973 | rebuild -f -o $@ > ${OUTCOMMAND_PATH}/out_command_${LOGIN}.$$ 2>&1 |
---|
| 974 | status=$? |
---|
| 975 | if [ ${status} -gt 0 ] ; then |
---|
| 976 | IGCM_debug_Print 2 "IGCM_sys_rebuild : error code ${status}" |
---|
| 977 | cat ${OUTCOMMAND_PATH}/out_command_${LOGIN}.$$ |
---|
| 978 | \rm ${OUTCOMMAND_PATH}/out_command_${LOGIN}.$$ |
---|
| 979 | IGCM_debug_Print 2 "IGCM_sys_rebuild : ${i}/${NB_ESSAI} sleep ${DELAI} seconds and try again." |
---|
| 980 | firstArg=${1} |
---|
| 981 | \rm ${firstArg} |
---|
| 982 | sleep $DELAI |
---|
| 983 | else |
---|
| 984 | \rm ${OUTCOMMAND_PATH}/out_command_${LOGIN}.$$ |
---|
| 985 | break |
---|
| 986 | fi |
---|
| 987 | (( i = i + 1 )) |
---|
| 988 | done |
---|
| 989 | |
---|
| 990 | if [ ${status} -gt 0 ] ; then |
---|
| 991 | echo "IGCM_sys_rebuild : rebuild error code is ${status}" |
---|
| 992 | IGCM_debug_Exit "rebuild" |
---|
| 993 | fi |
---|
| 994 | |
---|
| 995 | IGCM_debug_PopStack "IGCM_sys_rebuild" |
---|
| 996 | } |
---|
| 997 | |
---|
| 998 | #D-#================================================== |
---|
| 999 | #D-function IGCM_sys_rebuild_station |
---|
| 1000 | #D-* Purpose: rebuild parallel files describing station |
---|
| 1001 | #D-* Examples: |
---|
| 1002 | #D- |
---|
| 1003 | function IGCM_sys_rebuild_station { |
---|
| 1004 | IGCM_debug_PushStack "IGCM_sys_rebuild_station" $@ |
---|
| 1005 | typeset i list_opt file_in file_out prefix_invert list_invert |
---|
| 1006 | if ( $DEBUG_sys ) ; then |
---|
| 1007 | echo "IGCM_sys_rebuild_station :" $@ |
---|
| 1008 | fi |
---|
| 1009 | |
---|
| 1010 | # Station re-ordering is too expansive to be run within libIGCM |
---|
| 1011 | # This is due to (ncpdq - nrcat - ncpdq) I/O sequence. |
---|
| 1012 | # This re-ordering must be done "in memory" by the cmorization process |
---|
| 1013 | |
---|
| 1014 | # Only LMDZ text output contains the exact ordering of the station. |
---|
| 1015 | # We isolate this in the code below: |
---|
| 1016 | # 0 38 -157.5000000000000 70.98591549295774 |
---|
| 1017 | # 0 54 27.49999999999999 67.18309859154928 |
---|
| 1018 | # 0 56 -62.50000000000001 82.39436619718309 |
---|
| 1019 | # 0 79 12.49999999999999 78.59154929577466 |
---|
| 1020 | # 0 116 -165.0000000000000 76.05633802816901 |
---|
| 1021 | # 0 117 130.0000000000000 70.98591549295774 |
---|
| 1022 | # 0 118 110.0000000000000 87.46478873239437 |
---|
| 1023 | # 1 40 4.999999999999995 51.97183098591550 |
---|
| 1024 | |
---|
| 1025 | list_opt=$@ |
---|
| 1026 | |
---|
| 1027 | # Invert Axis : t,x -> x,t |
---|
| 1028 | # t,pres,x -> x,t,pres |
---|
| 1029 | # So that we can concatenate along x |
---|
| 1030 | i=0 |
---|
| 1031 | for file_in in ${list_opt} ; do |
---|
| 1032 | (( i = i + 1)) |
---|
| 1033 | [ ${i} = 1 ] && file_out=${file_in} && continue |
---|
| 1034 | # detect time counter and do the job only if present |
---|
| 1035 | var_unlim=$(ncdump -h ${file_in} | grep UNLIMITED | cut -d ' ' -f 1 | sed -e 's/^[ \t]*//' -e 's/[ \t]*$//') |
---|
| 1036 | if [ X${var_unlim} = Xtime_counter ] ; then |
---|
| 1037 | prefix_invert=$( basename ${file_in} .nc ) |
---|
| 1038 | IGCM_sys_ncpdq -a x,time_counter -a x,time_counter,presnivs ${file_in} ${prefix_invert}_xt.nc |
---|
| 1039 | list_invert[${#list_invert[*]}]=${prefix_invert}_xt.nc |
---|
| 1040 | fi |
---|
| 1041 | done |
---|
| 1042 | |
---|
| 1043 | # Concatenate |
---|
| 1044 | IGCM_sys_ncrcat ${list_invert[*]} histstn_xt.nc |
---|
| 1045 | |
---|
| 1046 | # Re-ivert file |
---|
| 1047 | IGCM_sys_ncpdq -a time_counter,x -a time_counter,presnivs,x histstn_xt.nc ${file_out} |
---|
| 1048 | |
---|
| 1049 | IGCM_debug_PopStack "IGCM_sys_rebuild_station" |
---|
| 1050 | } |
---|
| 1051 | |
---|
| 1052 | ############################################################## |
---|
| 1053 | # NCO OPERATOR |
---|
| 1054 | |
---|
| 1055 | #D-#================================================== |
---|
| 1056 | #D-function IGCM_sys_ncap2 |
---|
| 1057 | #D-* Purpose: encapsulate ncap2 call so as to manage error code and retry |
---|
| 1058 | #D-* Examples: |
---|
| 1059 | #D- |
---|
| 1060 | function IGCM_sys_ncap2 { |
---|
| 1061 | IGCM_debug_PushStack "IGCM_sys_ncap2" $@ |
---|
| 1062 | if ( $DEBUG_sys ) ; then |
---|
| 1063 | echo "IGCM_sys_ncap2 :" $@ |
---|
| 1064 | fi |
---|
| 1065 | |
---|
| 1066 | typeset NB_ESSAI DELAI status i |
---|
| 1067 | # number of tentative |
---|
| 1068 | NB_ESSAI=3 |
---|
| 1069 | # time delay between tentative |
---|
| 1070 | DELAI=2 |
---|
| 1071 | |
---|
| 1072 | i=0 |
---|
| 1073 | while [ $i -lt $NB_ESSAI ] ; do |
---|
[1194] | 1074 | ncap2 -C --buffer_size 838860800 "$@" > ${OUTCOMMAND_PATH}/out_command_${LOGIN}.$$ 2>&1 |
---|
[1181] | 1075 | status=$? |
---|
| 1076 | if [ ${status} -gt 0 ] ; then |
---|
| 1077 | IGCM_debug_Print 2 "IGCM_sys_ncap2 : error code ${status}" |
---|
| 1078 | cat ${OUTCOMMAND_PATH}/out_command_${LOGIN}.$$ |
---|
| 1079 | \rm ${OUTCOMMAND_PATH}/out_command_${LOGIN}.$$ |
---|
| 1080 | IGCM_debug_Print 2 "IGCM_sys_ncap2 : ${i}/${NB_ESSAI} sleep ${DELAI} seconds and try again." |
---|
| 1081 | sleep $DELAI |
---|
| 1082 | else |
---|
| 1083 | \rm ${OUTCOMMAND_PATH}/out_command_${LOGIN}.$$ |
---|
| 1084 | break |
---|
| 1085 | fi |
---|
| 1086 | (( i = i + 1 )) |
---|
| 1087 | done |
---|
| 1088 | |
---|
| 1089 | if [ ${status} -gt 0 ] ; then |
---|
| 1090 | echo "IGCM_sys_ncap2 : ncap2 error" |
---|
| 1091 | IGCM_debug_Exit "ncap2" |
---|
| 1092 | fi |
---|
| 1093 | |
---|
| 1094 | IGCM_debug_PopStack "IGCM_sys_ncap2" |
---|
| 1095 | } |
---|
| 1096 | |
---|
| 1097 | #D-#================================================== |
---|
| 1098 | #D-function IGCM_sys_ncatted |
---|
| 1099 | #D-* Purpose: encapsulate ncatted call so as to manage error code and retry |
---|
| 1100 | #D-* Examples: |
---|
| 1101 | #D- |
---|
| 1102 | function IGCM_sys_ncatted { |
---|
| 1103 | IGCM_debug_PushStack "IGCM_sys_ncatted" $@ |
---|
| 1104 | if ( $DEBUG_sys ) ; then |
---|
| 1105 | echo "IGCM_sys_ncatted :" $@ |
---|
| 1106 | fi |
---|
| 1107 | |
---|
| 1108 | typeset NB_ESSAI DELAI status i |
---|
| 1109 | # number of tentative |
---|
| 1110 | NB_ESSAI=3 |
---|
| 1111 | # time delay between tentative |
---|
| 1112 | DELAI=2 |
---|
| 1113 | |
---|
| 1114 | i=0 |
---|
| 1115 | while [ $i -lt $NB_ESSAI ] ; do |
---|
| 1116 | ncatted "$@" > ${OUTCOMMAND_PATH}/out_command_${LOGIN}.$$ 2>&1 |
---|
| 1117 | status=$? |
---|
| 1118 | if [ ${status} -gt 0 ] ; then |
---|
| 1119 | IGCM_debug_Print 2 "IGCM_sys_ncatted : error code ${status}" |
---|
| 1120 | cat ${OUTCOMMAND_PATH}/out_command_${LOGIN}.$$ |
---|
| 1121 | \rm ${OUTCOMMAND_PATH}/out_command_${LOGIN}.$$ |
---|
| 1122 | IGCM_debug_Print 2 "IGCM_sys_ncatted : ${i}/${NB_ESSAI} sleep ${DELAI} seconds and try again." |
---|
| 1123 | sleep $DELAI |
---|
| 1124 | else |
---|
| 1125 | \rm ${OUTCOMMAND_PATH}/out_command_${LOGIN}.$$ |
---|
| 1126 | break |
---|
| 1127 | fi |
---|
| 1128 | (( i = i + 1 )) |
---|
| 1129 | done |
---|
| 1130 | |
---|
| 1131 | if [ ${status} -gt 0 ] ; then |
---|
| 1132 | echo "IGCM_sys_ncatted : ncatted error" |
---|
| 1133 | IGCM_debug_Exit "ncatted" |
---|
| 1134 | fi |
---|
| 1135 | |
---|
| 1136 | IGCM_debug_PopStack "IGCM_sys_ncatted" |
---|
| 1137 | } |
---|
| 1138 | |
---|
| 1139 | #D-#================================================== |
---|
| 1140 | #D-function IGCM_sys_ncbo |
---|
| 1141 | #D-* Purpose: encapsulate ncbo call so as to manage error code and retry |
---|
| 1142 | #D-* Examples: |
---|
| 1143 | #D- |
---|
| 1144 | function IGCM_sys_ncbo { |
---|
| 1145 | IGCM_debug_PushStack "IGCM_sys_ncbo" $@ |
---|
| 1146 | if ( $DEBUG_sys ) ; then |
---|
| 1147 | echo "IGCM_sys_ncbo :" $@ |
---|
| 1148 | fi |
---|
| 1149 | |
---|
| 1150 | typeset NB_ESSAI DELAI status i |
---|
| 1151 | # number of tentative |
---|
| 1152 | NB_ESSAI=3 |
---|
| 1153 | # time delay between tentative |
---|
| 1154 | DELAI=2 |
---|
| 1155 | |
---|
| 1156 | i=0 |
---|
| 1157 | while [ $i -lt $NB_ESSAI ] ; do |
---|
[1194] | 1158 | ncbo -C --buffer_size 838860800 $@ > ${OUTCOMMAND_PATH}/out_command_${LOGIN}.$$ 2>&1 |
---|
[1181] | 1159 | status=$? |
---|
| 1160 | if [ ${status} -gt 0 ] ; then |
---|
| 1161 | IGCM_debug_Print 2 "IGCM_sys_ncbo : error code ${status}" |
---|
| 1162 | cat ${OUTCOMMAND_PATH}/out_command_${LOGIN}.$$ |
---|
| 1163 | \rm ${OUTCOMMAND_PATH}/out_command_${LOGIN}.$$ |
---|
| 1164 | IGCM_debug_Print 2 "IGCM_sys_ncbo : ${i}/${NB_ESSAI} sleep ${DELAI} seconds and try again." |
---|
| 1165 | sleep $DELAI |
---|
| 1166 | else |
---|
| 1167 | \rm ${OUTCOMMAND_PATH}/out_command_${LOGIN}.$$ |
---|
| 1168 | break |
---|
| 1169 | fi |
---|
| 1170 | (( i = i + 1 )) |
---|
| 1171 | done |
---|
| 1172 | |
---|
| 1173 | if [ ${status} -gt 0 ] ; then |
---|
| 1174 | echo "IGCM_sys_ncbo : ncbo error" |
---|
| 1175 | IGCM_debug_Exit "ncbo" |
---|
| 1176 | fi |
---|
| 1177 | |
---|
| 1178 | IGCM_debug_PopStack "IGCM_sys_ncbo" |
---|
| 1179 | } |
---|
| 1180 | |
---|
| 1181 | #D-#================================================== |
---|
| 1182 | #D-function IGCM_sys_ncdif |
---|
| 1183 | #D-* Purpose: encapsulate ncdiff call so as to manage error code and retry |
---|
| 1184 | #D-* Examples: |
---|
| 1185 | #D- |
---|
| 1186 | function IGCM_sys_ncdiff { |
---|
| 1187 | IGCM_debug_PushStack "IGCM_sys_ncdiff" $@ |
---|
| 1188 | if ( $DEBUG_sys ) ; then |
---|
| 1189 | echo "IGCM_sys_ncdiff :" $@ |
---|
| 1190 | fi |
---|
| 1191 | |
---|
| 1192 | typeset NB_ESSAI DELAI status i |
---|
| 1193 | # number of tentative |
---|
| 1194 | NB_ESSAI=3 |
---|
| 1195 | # time delay between tentative |
---|
| 1196 | DELAI=2 |
---|
| 1197 | |
---|
| 1198 | i=0 |
---|
| 1199 | while [ $i -lt $NB_ESSAI ] ; do |
---|
[1194] | 1200 | ncdiff -C --buffer_size 838860800 $@ > ${OUTCOMMAND_PATH}/out_command_${LOGIN}.$$ 2>&1 |
---|
[1181] | 1201 | status=$? |
---|
| 1202 | if [ ${status} -gt 0 ] ; then |
---|
| 1203 | IGCM_debug_Print 2 "IGCM_sys_ncdiff : error code ${status}" |
---|
| 1204 | cat ${OUTCOMMAND_PATH}/out_command_${LOGIN}.$$ |
---|
| 1205 | \rm ${OUTCOMMAND_PATH}/out_command_${LOGIN}.$$ |
---|
| 1206 | IGCM_debug_Print 2 "IGCM_sys_ncdiff : ${i}/${NB_ESSAI} sleep ${DELAI} seconds and try again." |
---|
| 1207 | sleep $DELAI |
---|
| 1208 | else |
---|
| 1209 | \rm ${OUTCOMMAND_PATH}/out_command_${LOGIN}.$$ |
---|
| 1210 | break |
---|
| 1211 | fi |
---|
| 1212 | (( i = i + 1 )) |
---|
| 1213 | done |
---|
| 1214 | |
---|
| 1215 | if [ ${status} -gt 0 ] ; then |
---|
| 1216 | echo "IGCM_sys_ncdiff : ncdiff error" |
---|
| 1217 | IGCM_debug_Exit "ncdiff" |
---|
| 1218 | fi |
---|
| 1219 | |
---|
| 1220 | IGCM_debug_PopStack "IGCM_sys_ncdiff" |
---|
| 1221 | } |
---|
| 1222 | |
---|
| 1223 | #D-#================================================== |
---|
| 1224 | #D-function IGCM_sys_ncea |
---|
| 1225 | #D-* Purpose: encapsulate ncea call so as to manage error code and retry |
---|
| 1226 | #D-* Examples: |
---|
| 1227 | #D- |
---|
| 1228 | function IGCM_sys_ncea { |
---|
| 1229 | IGCM_debug_PushStack "IGCM_sys_ncea" $@ |
---|
| 1230 | if ( $DEBUG_sys ) ; then |
---|
| 1231 | echo "IGCM_sys_ncea :" $@ |
---|
| 1232 | fi |
---|
| 1233 | |
---|
| 1234 | typeset NB_ESSAI DELAI status i |
---|
| 1235 | # number of tentative |
---|
| 1236 | NB_ESSAI=3 |
---|
| 1237 | # time delay between tentative |
---|
| 1238 | DELAI=2 |
---|
| 1239 | |
---|
| 1240 | i=0 |
---|
| 1241 | while [ $i -lt $NB_ESSAI ] ; do |
---|
[1194] | 1242 | ncea -C --buffer_size 838860800 $@ > ${OUTCOMMAND_PATH}/out_command_${LOGIN}.$$ 2>&1 |
---|
[1181] | 1243 | status=$? |
---|
| 1244 | if [ ${status} -gt 0 ] ; then |
---|
| 1245 | IGCM_debug_Print 2 "IGCM_sys_ncea : error code ${status}" |
---|
| 1246 | cat ${OUTCOMMAND_PATH}/out_command_${LOGIN}.$$ |
---|
| 1247 | \rm ${OUTCOMMAND_PATH}/out_command_${LOGIN}.$$ |
---|
| 1248 | IGCM_debug_Print 2 "IGCM_sys_ncea : ${i}/${NB_ESSAI} sleep ${DELAI} seconds and try again." |
---|
| 1249 | sleep $DELAI |
---|
| 1250 | else |
---|
| 1251 | \rm ${OUTCOMMAND_PATH}/out_command_${LOGIN}.$$ |
---|
| 1252 | break |
---|
| 1253 | fi |
---|
| 1254 | (( i = i + 1 )) |
---|
| 1255 | done |
---|
| 1256 | |
---|
| 1257 | if [ ${status} -gt 0 ] ; then |
---|
| 1258 | echo "IGCM_sys_ncea : ncea error" |
---|
| 1259 | IGCM_debug_Exit "ncea" |
---|
| 1260 | fi |
---|
| 1261 | |
---|
| 1262 | IGCM_debug_PopStack "IGCM_sys_ncea" |
---|
| 1263 | } |
---|
| 1264 | |
---|
| 1265 | #D-#================================================== |
---|
| 1266 | #D-function IGCM_sys_ncecat |
---|
| 1267 | #D-* Purpose: encapsulate ncecat call so as to manage error code and retry |
---|
| 1268 | #D-* Examples: |
---|
| 1269 | #D- |
---|
| 1270 | function IGCM_sys_ncecat { |
---|
| 1271 | IGCM_debug_PushStack "IGCM_sys_ncecat" $@ |
---|
| 1272 | if ( $DEBUG_sys ) ; then |
---|
| 1273 | echo "IGCM_sys_ncecat :" $@ |
---|
| 1274 | fi |
---|
| 1275 | |
---|
| 1276 | typeset NB_ESSAI DELAI status i |
---|
| 1277 | # number of tentative |
---|
| 1278 | NB_ESSAI=3 |
---|
| 1279 | # time delay between tentative |
---|
| 1280 | DELAI=2 |
---|
| 1281 | |
---|
| 1282 | i=0 |
---|
| 1283 | while [ $i -lt $NB_ESSAI ] ; do |
---|
[1194] | 1284 | ncecat -C --buffer_size 838860800 $@ > ${OUTCOMMAND_PATH}/out_command_${LOGIN}.$$ 2>&1 |
---|
[1181] | 1285 | status=$? |
---|
| 1286 | if [ ${status} -gt 0 ] ; then |
---|
| 1287 | IGCM_debug_Print 2 "IGCM_sys_ncecat : error code ${status}" |
---|
| 1288 | cat ${OUTCOMMAND_PATH}/out_command_${LOGIN}.$$ |
---|
| 1289 | \rm ${OUTCOMMAND_PATH}/out_command_${LOGIN}.$$ |
---|
| 1290 | IGCM_debug_Print 2 "IGCM_sys_ncecat : ${i}/${NB_ESSAI} sleep ${DELAI} seconds and try again." |
---|
| 1291 | sleep $DELAI |
---|
| 1292 | else |
---|
| 1293 | \rm ${OUTCOMMAND_PATH}/out_command_${LOGIN}.$$ |
---|
| 1294 | break |
---|
| 1295 | fi |
---|
| 1296 | (( i = i + 1 )) |
---|
| 1297 | done |
---|
| 1298 | |
---|
| 1299 | if [ ${status} -gt 0 ] ; then |
---|
| 1300 | echo "IGCM_sys_ncecat : ncecat error" |
---|
| 1301 | IGCM_debug_Exit "ncecat" |
---|
| 1302 | fi |
---|
| 1303 | |
---|
| 1304 | IGCM_debug_PopStack "IGCM_sys_ncecat" |
---|
| 1305 | } |
---|
| 1306 | |
---|
| 1307 | #D-#================================================== |
---|
| 1308 | #D-function IGCM_sys_ncflint |
---|
| 1309 | #D-* Purpose: encapsulate ncflint call so as to manage error code and retry |
---|
| 1310 | #D-* Examples: |
---|
| 1311 | #D- |
---|
| 1312 | function IGCM_sys_ncflint { |
---|
| 1313 | IGCM_debug_PushStack "IGCM_sys_ncflint" $@ |
---|
| 1314 | if ( $DEBUG_sys ) ; then |
---|
| 1315 | echo "IGCM_sys_ncflint :" $@ |
---|
| 1316 | fi |
---|
| 1317 | |
---|
| 1318 | typeset NB_ESSAI DELAI status i |
---|
| 1319 | # number of tentative |
---|
| 1320 | NB_ESSAI=3 |
---|
| 1321 | # time delay between tentative |
---|
| 1322 | DELAI=2 |
---|
| 1323 | |
---|
| 1324 | i=0 |
---|
| 1325 | while [ $i -lt $NB_ESSAI ] ; do |
---|
[1194] | 1326 | ncflint -C --buffer_size 838860800 $@ > ${OUTCOMMAND_PATH}/out_command_${LOGIN}.$$ 2>&1 |
---|
[1181] | 1327 | status=$? |
---|
| 1328 | if [ ${status} -gt 0 ] ; then |
---|
| 1329 | IGCM_debug_Print 2 "IGCM_sys_ncflint : error code ${status}" |
---|
| 1330 | cat ${OUTCOMMAND_PATH}/out_command_${LOGIN}.$$ |
---|
| 1331 | \rm ${OUTCOMMAND_PATH}/out_command_${LOGIN}.$$ |
---|
| 1332 | IGCM_debug_Print 2 "IGCM_sys_ncflint : ${i}/${NB_ESSAI} sleep ${DELAI} seconds and try again." |
---|
| 1333 | sleep $DELAI |
---|
| 1334 | else |
---|
| 1335 | \rm ${OUTCOMMAND_PATH}/out_command_${LOGIN}.$$ |
---|
| 1336 | break |
---|
| 1337 | fi |
---|
| 1338 | (( i = i + 1 )) |
---|
| 1339 | done |
---|
| 1340 | |
---|
| 1341 | if [ ${status} -gt 0 ] ; then |
---|
| 1342 | echo "IGCM_sys_ncflint : ncflint error" |
---|
| 1343 | IGCM_debug_Exit "ncflint" |
---|
| 1344 | fi |
---|
| 1345 | |
---|
| 1346 | IGCM_debug_PopStack "IGCM_sys_ncflint" |
---|
| 1347 | } |
---|
| 1348 | |
---|
| 1349 | #D-#================================================== |
---|
| 1350 | #D-function IGCM_sys_ncks |
---|
| 1351 | #D-* Purpose: encapsulate ncks call so as to manage error code and retry |
---|
| 1352 | #D-* Examples: |
---|
| 1353 | #D- |
---|
| 1354 | function IGCM_sys_ncks { |
---|
| 1355 | IGCM_debug_PushStack "IGCM_sys_ncks" $@ |
---|
| 1356 | if ( $DEBUG_sys ) ; then |
---|
| 1357 | echo "IGCM_sys_ncks :" $@ |
---|
| 1358 | fi |
---|
| 1359 | |
---|
| 1360 | typeset NB_ESSAI DELAI status i |
---|
| 1361 | # number of tentative |
---|
| 1362 | NB_ESSAI=3 |
---|
| 1363 | # time delay between tentative |
---|
| 1364 | DELAI=2 |
---|
| 1365 | |
---|
| 1366 | i=0 |
---|
| 1367 | while [ $i -lt $NB_ESSAI ] ; do |
---|
[1194] | 1368 | ncks -C --buffer_size 838860800 $@ > ${OUTCOMMAND_PATH}/out_command_${LOGIN}.$$ 2>&1 |
---|
[1181] | 1369 | status=$? |
---|
| 1370 | if [ ${status} -gt 0 ] ; then |
---|
| 1371 | IGCM_debug_Print 2 "IGCM_sys_ncks : error code ${status}" |
---|
| 1372 | cat ${OUTCOMMAND_PATH}/out_command_${LOGIN}.$$ |
---|
| 1373 | \rm ${OUTCOMMAND_PATH}/out_command_${LOGIN}.$$ |
---|
| 1374 | IGCM_debug_Print 2 "IGCM_sys_ncks : ${i}/${NB_ESSAI} sleep ${DELAI} seconds and try again." |
---|
| 1375 | sleep $DELAI |
---|
| 1376 | else |
---|
| 1377 | \rm ${OUTCOMMAND_PATH}/out_command_${LOGIN}.$$ |
---|
| 1378 | break |
---|
| 1379 | fi |
---|
| 1380 | (( i = i + 1 )) |
---|
| 1381 | done |
---|
| 1382 | |
---|
| 1383 | if [ ${status} -gt 0 ] ; then |
---|
| 1384 | echo "IGCM_sys_ncks : ncks error" |
---|
| 1385 | IGCM_debug_Exit "ncks" |
---|
| 1386 | fi |
---|
| 1387 | |
---|
| 1388 | IGCM_debug_PopStack "IGCM_sys_ncks" |
---|
| 1389 | } |
---|
| 1390 | |
---|
| 1391 | #D-#================================================== |
---|
| 1392 | #D-function IGCM_sys_ncpdq |
---|
| 1393 | #D-* Purpose: encapsulate ncpdq call so as to manage error code and retry |
---|
| 1394 | #D-* Examples: |
---|
| 1395 | #D- |
---|
| 1396 | function IGCM_sys_ncpdq { |
---|
| 1397 | IGCM_debug_PushStack "IGCM_sys_ncpdq" $@ |
---|
| 1398 | if ( $DEBUG_sys ) ; then |
---|
| 1399 | echo "IGCM_sys_ncpdq :" $@ |
---|
| 1400 | fi |
---|
| 1401 | |
---|
| 1402 | typeset NB_ESSAI DELAI status i |
---|
| 1403 | # number of tentative |
---|
| 1404 | NB_ESSAI=3 |
---|
| 1405 | # time delay between tentative |
---|
| 1406 | DELAI=2 |
---|
| 1407 | |
---|
| 1408 | i=0 |
---|
| 1409 | while [ $i -lt $NB_ESSAI ] ; do |
---|
[1194] | 1410 | ncpdq -C --buffer_size 838860800 $@ > ${OUTCOMMAND_PATH}/out_command_${LOGIN}.$$ 2>&1 |
---|
[1181] | 1411 | status=$? |
---|
| 1412 | if [ ${status} -gt 0 ] ; then |
---|
| 1413 | IGCM_debug_Print 2 "IGCM_sys_ncpdq : error code ${status}" |
---|
| 1414 | cat ${OUTCOMMAND_PATH}/out_command_${LOGIN}.$$ |
---|
| 1415 | \rm ${OUTCOMMAND_PATH}/out_command_${LOGIN}.$$ |
---|
| 1416 | IGCM_debug_Print 2 "IGCM_sys_ncpdq : ${i}/${NB_ESSAI} sleep ${DELAI} seconds and try again." |
---|
| 1417 | sleep $DELAI |
---|
| 1418 | else |
---|
| 1419 | \rm ${OUTCOMMAND_PATH}/out_command_${LOGIN}.$$ |
---|
| 1420 | break |
---|
| 1421 | fi |
---|
| 1422 | (( i = i + 1 )) |
---|
| 1423 | done |
---|
| 1424 | |
---|
| 1425 | if [ ${status} -gt 0 ] ; then |
---|
| 1426 | echo "IGCM_sys_ncpdq : ncpdq error" |
---|
| 1427 | IGCM_debug_Exit "ncpdq" |
---|
| 1428 | fi |
---|
| 1429 | |
---|
| 1430 | IGCM_debug_PopStack "IGCM_sys_ncpdq" |
---|
| 1431 | } |
---|
| 1432 | |
---|
| 1433 | #D-#================================================== |
---|
| 1434 | #D-function IGCM_sys_ncra |
---|
| 1435 | #D-* Purpose: encapsulate ncra call so as to manage error code and retry |
---|
| 1436 | #D-* Examples: |
---|
| 1437 | #D- |
---|
| 1438 | function IGCM_sys_ncra { |
---|
| 1439 | IGCM_debug_PushStack "IGCM_sys_ncra" $@ |
---|
| 1440 | if ( $DEBUG_sys ) ; then |
---|
| 1441 | echo "IGCM_sys_ncra :" $@ |
---|
| 1442 | fi |
---|
| 1443 | |
---|
| 1444 | typeset NB_ESSAI DELAI status i |
---|
| 1445 | # number of tentative |
---|
| 1446 | NB_ESSAI=3 |
---|
| 1447 | # time delay between tentative |
---|
| 1448 | DELAI=2 |
---|
| 1449 | |
---|
| 1450 | i=0 |
---|
| 1451 | while [ $i -lt $NB_ESSAI ] ; do |
---|
[1194] | 1452 | ncra -C --buffer_size 838860800 $@ > ${OUTCOMMAND_PATH}/out_command_${LOGIN}.$$ 2>&1 |
---|
[1181] | 1453 | status=$? |
---|
| 1454 | if [ ${status} -gt 0 ] ; then |
---|
| 1455 | IGCM_debug_Print 2 "IGCM_sys_ncra : error code ${status}" |
---|
| 1456 | cat ${OUTCOMMAND_PATH}/out_command_${LOGIN}.$$ |
---|
| 1457 | \rm ${OUTCOMMAND_PATH}/out_command_${LOGIN}.$$ |
---|
| 1458 | IGCM_debug_Print 2 "IGCM_sys_ncra : ${i}/${NB_ESSAI} sleep ${DELAI} seconds and try again." |
---|
| 1459 | sleep $DELAI |
---|
| 1460 | else |
---|
| 1461 | \rm ${OUTCOMMAND_PATH}/out_command_${LOGIN}.$$ |
---|
| 1462 | break |
---|
| 1463 | fi |
---|
| 1464 | (( i = i + 1 )) |
---|
| 1465 | done |
---|
| 1466 | |
---|
| 1467 | if [ ${status} -gt 0 ] ; then |
---|
| 1468 | echo "IGCM_sys_ncra : ncra error" |
---|
| 1469 | IGCM_debug_Exit "ncra" |
---|
| 1470 | fi |
---|
| 1471 | |
---|
| 1472 | IGCM_debug_PopStack "IGCM_sys_ncra" |
---|
| 1473 | } |
---|
| 1474 | |
---|
| 1475 | #D-#================================================== |
---|
| 1476 | #D-function IGCM_sys_ncrcat |
---|
| 1477 | #D-* Purpose: encapsulate ncrcat call so as to manage error code and retry |
---|
| 1478 | #D-* Examples: |
---|
| 1479 | #D- |
---|
| 1480 | function IGCM_sys_ncrcat { |
---|
| 1481 | IGCM_debug_PushStack "IGCM_sys_ncrcat" $@ |
---|
| 1482 | if ( $DEBUG_sys ) ; then |
---|
| 1483 | echo "IGCM_sys_ncrcat :" $@ |
---|
| 1484 | fi |
---|
| 1485 | |
---|
| 1486 | typeset NB_ESSAI DELAI status i lastArg |
---|
| 1487 | # number of tentative |
---|
| 1488 | NB_ESSAI=3 |
---|
| 1489 | # time delay between tentative |
---|
| 1490 | DELAI=2 |
---|
| 1491 | |
---|
| 1492 | i=0 |
---|
| 1493 | while [ $i -lt $NB_ESSAI ] ; do |
---|
[1194] | 1494 | ncrcat -C --buffer_size 838860800 $@ > ${OUTCOMMAND_PATH}/out_command_${LOGIN}.$$ 2>&1 |
---|
[1181] | 1495 | status=$? |
---|
| 1496 | if [ ${status} -gt 0 ] ; then |
---|
| 1497 | IGCM_debug_Print 2 "IGCM_sys_ncrcat : error code ${status}" |
---|
| 1498 | cat ${OUTCOMMAND_PATH}/out_command_${LOGIN}.$$ |
---|
| 1499 | \rm ${OUTCOMMAND_PATH}/out_command_${LOGIN}.$$ |
---|
| 1500 | IGCM_debug_Print 2 "IGCM_sys_ncrcat : ${i}/${NB_ESSAI} sleep ${DELAI} seconds and try again." |
---|
| 1501 | sleep $DELAI |
---|
[1204] | 1502 | elif ( [ ! "X$( grep "WARNING Intra-file non-monotonicity" ${OUTCOMMAND_PATH}/out_command_${LOGIN}.$$ )" = "X" ] && [ X${config_Post_IgnoreNonMonotonic} = XFALSE ] ) ; then |
---|
[1181] | 1503 | IGCM_debug_Print 2 "IGCM_sys_ncrcat : WARNING Intra-file non-monotonicity" |
---|
| 1504 | cat ${OUTCOMMAND_PATH}/out_command_${LOGIN}.$$ |
---|
| 1505 | # remove files having corrupted time axis |
---|
| 1506 | eval lastArg=\${$#} |
---|
[1204] | 1507 | IGCM_debug_Print 2 "Remove files having corrupted time axis" |
---|
[1181] | 1508 | IGCM_debug_Print 2 "IGCM_sys_ncrcat : Delete ${lastArg}" |
---|
| 1509 | \rm ${lastArg} |
---|
| 1510 | \rm ${OUTCOMMAND_PATH}/out_command_${LOGIN}.$$ |
---|
| 1511 | IGCM_debug_Print 2 "IGCM_sys_ncrcat : ${i}/${NB_ESSAI} sleep ${DELAI} seconds and try again." |
---|
| 1512 | sleep $DELAI |
---|
| 1513 | else |
---|
| 1514 | \rm ${OUTCOMMAND_PATH}/out_command_${LOGIN}.$$ |
---|
| 1515 | break |
---|
| 1516 | fi |
---|
| 1517 | (( i = i + 1 )) |
---|
| 1518 | done |
---|
| 1519 | |
---|
[1278] | 1520 | # Special case for spinup with cyclic time axis: change attribute calendar to none |
---|
| 1521 | if [ X${config_Post_IgnoreNonMonotonic} = XTRUE ] ; then |
---|
| 1522 | eval lastArg=\${$#} |
---|
| 1523 | echo "IGCM_sys_ncrcat : change attribute calendar to none in file:" ${lastArg} |
---|
| 1524 | IGCM_sys_ncatted -a calendar,time_counter,m,c,none ${lastArg} |
---|
| 1525 | fi |
---|
| 1526 | |
---|
[1181] | 1527 | if [ ${status} -gt 0 ] ; then |
---|
| 1528 | echo "IGCM_sys_ncrcat : ncrcat error" |
---|
| 1529 | #IGCM_debug_Exit "ncrcat" |
---|
| 1530 | fi |
---|
| 1531 | |
---|
| 1532 | IGCM_debug_PopStack "IGCM_sys_ncrcat" |
---|
| 1533 | } |
---|
| 1534 | |
---|
| 1535 | #D-#================================================== |
---|
| 1536 | #D-function IGCM_sys_ncrename |
---|
| 1537 | #D-* Purpose: encapsulate ncrename call so as to manage error code and retry |
---|
| 1538 | #D-* Examples: |
---|
| 1539 | #D- |
---|
| 1540 | function IGCM_sys_ncrename { |
---|
| 1541 | IGCM_debug_PushStack "IGCM_sys_ncrename" $@ |
---|
| 1542 | if ( $DEBUG_sys ) ; then |
---|
| 1543 | echo "IGCM_sys_ncrename :" $@ |
---|
| 1544 | fi |
---|
| 1545 | |
---|
| 1546 | typeset NB_ESSAI DELAI status i |
---|
| 1547 | # number of tentative |
---|
| 1548 | NB_ESSAI=3 |
---|
| 1549 | # time delay between tentative |
---|
| 1550 | DELAI=2 |
---|
| 1551 | |
---|
| 1552 | i=0 |
---|
| 1553 | while [ $i -lt $NB_ESSAI ] ; do |
---|
| 1554 | ncrename $@ > ${OUTCOMMAND_PATH}/out_command_${LOGIN}.$$ 2>&1 |
---|
| 1555 | status=$? |
---|
| 1556 | if [ ${status} -gt 0 ] ; then |
---|
| 1557 | IGCM_debug_Print 2 "IGCM_sys_ncrename : error code ${status}" |
---|
| 1558 | cat ${OUTCOMMAND_PATH}/out_command_${LOGIN}.$$ |
---|
| 1559 | \rm ${OUTCOMMAND_PATH}/out_command_${LOGIN}.$$ |
---|
| 1560 | IGCM_debug_Print 2 "IGCM_sys_ncrename : ${i}/${NB_ESSAI} sleep ${DELAI} seconds and try again." |
---|
| 1561 | sleep $DELAI |
---|
| 1562 | else |
---|
| 1563 | \rm ${OUTCOMMAND_PATH}/out_command_${LOGIN}.$$ |
---|
| 1564 | break |
---|
| 1565 | fi |
---|
| 1566 | (( i = i + 1 )) |
---|
| 1567 | done |
---|
| 1568 | |
---|
| 1569 | if [ ${status} -gt 0 ] ; then |
---|
| 1570 | echo "IGCM_sys_ncrename : ncrename error" |
---|
| 1571 | IGCM_debug_Exit "ncrename" |
---|
| 1572 | fi |
---|
| 1573 | |
---|
| 1574 | IGCM_debug_PopStack "IGCM_sys_ncrename" |
---|
| 1575 | } |
---|
| 1576 | |
---|
| 1577 | #D-#================================================== |
---|
| 1578 | #D-function IGCM_sys_ncwa |
---|
| 1579 | #D-* Purpose: encapsulate ncwa call so as to manage error code and retry |
---|
| 1580 | #D-* Examples: |
---|
| 1581 | #D- |
---|
| 1582 | function IGCM_sys_ncwa { |
---|
| 1583 | IGCM_debug_PushStack "IGCM_sys_ncwa" $@ |
---|
| 1584 | if ( $DEBUG_sys ) ; then |
---|
| 1585 | echo "IGCM_sys_ncwa :" $@ |
---|
| 1586 | fi |
---|
| 1587 | |
---|
| 1588 | typeset NB_ESSAI DELAI status i |
---|
| 1589 | # number of tentative |
---|
| 1590 | NB_ESSAI=3 |
---|
| 1591 | # time delay between tentative |
---|
| 1592 | DELAI=2 |
---|
| 1593 | |
---|
| 1594 | i=0 |
---|
| 1595 | while [ $i -lt $NB_ESSAI ] ; do |
---|
[1194] | 1596 | ncwa -C --buffer_size 838860800 $@ > ${OUTCOMMAND_PATH}/out_command_${LOGIN}.$$ 2>&1 |
---|
[1181] | 1597 | status=$? |
---|
| 1598 | if [ ${status} -gt 0 ] ; then |
---|
| 1599 | IGCM_debug_Print 2 "IGCM_sys_ncwa : error code ${status}" |
---|
| 1600 | cat ${OUTCOMMAND_PATH}/out_command_${LOGIN}.$$ |
---|
| 1601 | \rm ${OUTCOMMAND_PATH}/out_command_${LOGIN}.$$ |
---|
| 1602 | IGCM_debug_Print 2 "IGCM_sys_ncwa : ${i}/${NB_ESSAI} sleep ${DELAI} seconds and try again." |
---|
| 1603 | sleep $DELAI |
---|
| 1604 | else |
---|
| 1605 | \rm ${OUTCOMMAND_PATH}/out_command_${LOGIN}.$$ |
---|
| 1606 | break |
---|
| 1607 | fi |
---|
| 1608 | (( i = i + 1 )) |
---|
| 1609 | done |
---|
| 1610 | |
---|
| 1611 | if [ ${status} -gt 0 ] ; then |
---|
| 1612 | echo "IGCM_sys_ncwa : ncwa error" |
---|
| 1613 | IGCM_debug_Exit "ncwa" |
---|
| 1614 | fi |
---|
| 1615 | |
---|
| 1616 | IGCM_debug_PopStack "IGCM_sys_ncwa" |
---|
| 1617 | } |
---|
| 1618 | |
---|
| 1619 | ############################################################## |
---|
| 1620 | # CDO OPERATOR |
---|
| 1621 | |
---|
| 1622 | #D-#================================================== |
---|
| 1623 | #D-function IGCM_sys_cdo |
---|
| 1624 | #D-* Purpose: encapsulate cdo call so as to manage error code and retry |
---|
| 1625 | #D-* Examples: |
---|
| 1626 | #D- |
---|
| 1627 | function IGCM_sys_cdo { |
---|
| 1628 | IGCM_debug_PushStack "IGCM_sys_cdo" $@ |
---|
| 1629 | if ( $DEBUG_sys ) ; then |
---|
| 1630 | echo "IGCM_sys_cdo :" $@ |
---|
| 1631 | fi |
---|
| 1632 | |
---|
| 1633 | typeset status |
---|
| 1634 | |
---|
| 1635 | \cdo $@ > ${OUTCOMMAND_PATH}/out_command_${LOGIN}.$$ 2>&1 |
---|
| 1636 | status=$? |
---|
| 1637 | if [ ${status} -gt 0 ] ; then |
---|
| 1638 | echo "IGCM_sys_cdo : error code ${status}" |
---|
| 1639 | cat ${OUTCOMMAND_PATH}/out_command_${LOGIN}.$$ |
---|
| 1640 | \rm ${OUTCOMMAND_PATH}/out_command_${LOGIN}.$$ |
---|
| 1641 | IGCM_debug_PopStack "IGCM_sys_cdo" |
---|
| 1642 | return 1 |
---|
| 1643 | else |
---|
| 1644 | IGCM_debug_PopStack "IGCM_sys_cdo" |
---|
| 1645 | return 0 |
---|
| 1646 | fi |
---|
| 1647 | |
---|
| 1648 | IGCM_debug_PopStack "IGCM_sys_cdo" |
---|
| 1649 | } |
---|
[1569] | 1650 | # |
---|
| 1651 | #D-#================================================== |
---|
| 1652 | #D-function IGCM_sys_create_run_dir |
---|
| 1653 | #D-* Purpose: stop the simulation in order to work into the run_dir directory |
---|
| 1654 | #D-* Examples: |
---|
| 1655 | #D- |
---|
| 1656 | function IGCM_sys_create_run_dir { |
---|
| 1657 | IGCM_debug_PushStack "IGCM_sys_create_run_dir" |
---|
| 1658 | if ( $DEBUG_sys ) ; then |
---|
| 1659 | echo "IGCM_sys_create_run_dir :" |
---|
| 1660 | fi |
---|
| 1661 | if [ -f ${libIGCM}/Job_debug_${config_UserChoices_JobName} ] ; then |
---|
[1181] | 1662 | |
---|
[1569] | 1663 | CPL_comp=n ; SRF_comp=n ; OCE_comp=n ; CHM_comp=n |
---|
| 1664 | for comp in ${config_ListOfComponents[*]} ; do |
---|
| 1665 | [ "X${comp}" = "XCPL" ] && CPL_comp=y |
---|
| 1666 | [ "X${comp}" = "XSRF" ] && SRF_comp=y |
---|
| 1667 | [ "X${comp}" = "XOCE" ] && OCE_comp=y |
---|
| 1668 | [ "X${comp}" = "XCHM" ] && CHM_comp=y |
---|
| 1669 | eval ExeNameIn=\${config_Executable_${comp}[0]} |
---|
| 1670 | eval ExeNameOut=\${config_Executable_${comp}[1]} |
---|
| 1671 | if [ X${ExeNameIn} != X\"\" ] ; then |
---|
| 1672 | eval ExeNameIn=${ExeNameIn} |
---|
| 1673 | echo "$ExeNameIn"" ""$ExeNameOut" >> components_binary.txt |
---|
| 1674 | fi |
---|
| 1675 | done |
---|
| 1676 | SUBMIT_DIRECTORY=$(grep SUBMIT_DIR ${libIGCM}/libIGCM_sys/libIGCM_sys_${SYSTEM}.ksh | grep -m1 typeset | cut -dx -f2) |
---|
[1574] | 1677 | sed -e "s%::EXECUTION::%${EXECUTION}%" \ |
---|
[1569] | 1678 | -e "s%::EXECUTION_TYPE::%${executionType}%" \ |
---|
| 1679 | -e "s%::JOBNAME::%${config_UserChoices_JobName}%" \ |
---|
| 1680 | -e "s%::SUBMIT_DIR::%${SUBMIT_DIRECTORY}%" \ |
---|
| 1681 | -e "s%::CPL_comp::%${CPL_comp}%" \ |
---|
| 1682 | -e "s%::OCE_comp::%${OCE_comp}%" \ |
---|
| 1683 | -e "s%::SRF_comp::%${SRF_comp}%" \ |
---|
| 1684 | -e "s%::CHM_comp::%${CHM_comp}%" \ |
---|
| 1685 | ${libIGCM}/Job_debug_${config_UserChoices_JobName} > ${RUN_DIR}/Job_debug_${config_UserChoices_JobName} |
---|
[1574] | 1686 | cp ${EnvFile} ${RUN_DIR}/. |
---|
[1569] | 1687 | echo |
---|
| 1688 | echo "############################################" |
---|
| 1689 | echo "# DEBUG PHASE : CREATION OF RUN_DIR #" |
---|
| 1690 | echo "############################################" |
---|
| 1691 | echo |
---|
| 1692 | echo "You are in development or debug phase" |
---|
| 1693 | echo "You can run directly into the running directory which is here " |
---|
| 1694 | echo ${RUN_DIR} |
---|
| 1695 | echo "Inside the run directory you will find a Job_debug_${config_UserChoices_JobName}" |
---|
| 1696 | echo "to be used to launch the run as follows :" |
---|
| 1697 | echo "${SUBMIT} Job_debug_${config_UserChoices_JobName}" |
---|
| 1698 | exit |
---|
| 1699 | else |
---|
| 1700 | echo "############################################" |
---|
| 1701 | echo "# DEBUG PHASE : CREATION OF RUN_DIR #" |
---|
| 1702 | echo "############################################" |
---|
| 1703 | echo |
---|
| 1704 | echo "You are in development or debug phase" |
---|
| 1705 | echo "You can run directly into the running directory which is here " |
---|
| 1706 | echo ${RUN_DIR} |
---|
| 1707 | exit |
---|
| 1708 | fi |
---|
| 1709 | |
---|
| 1710 | IGCM_debug_PopStack "IGCM_sys_create_run_dir" |
---|
| 1711 | } |
---|