1 | #!/bin/ksh |
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2 | |
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3 | #************************************************************** |
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4 | # Author: Martial Mancip |
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5 | # Contact: Martial.Mancip__at__ipsl.jussieu.fr |
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6 | # $Revision:: $ Revision of last commit |
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7 | # $Author:: $ Author of last commit |
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8 | # $Date:: $ Date of last commit |
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9 | # IPSL (2006) |
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10 | # This software is governed by the CeCILL licence see libIGCM/libIGCM_CeCILL.LIC |
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11 | # |
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12 | #************************************************************** |
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13 | |
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14 | # bypass specific internationalization (for gawk) |
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15 | export LC_ALL="C" |
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16 | |
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17 | # By default, all libIGCM_sys save functions will protect output datas (RUN execution mode) |
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18 | # other values : DEB(ug), DEV(elopment). |
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19 | JobType=${JobType:=RUN} |
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20 | |
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21 | #==================================================== |
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22 | # set PackDefault false by default |
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23 | PackDefault=false |
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24 | |
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25 | #==================================================== |
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26 | # set BigBrother false by default |
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27 | BigBrother=${BigBrother:=false} |
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28 | |
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29 | #==================================================== |
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30 | # set BigBrother channel (AMQP or MAIL) |
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31 | # only MAIL working at present due to firewall constraint |
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32 | BigBrotherChannel=MAIL |
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33 | |
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34 | # no need to be so verbose in checking mode |
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35 | if [ ! X${TaskType} = Xchecking ] ; then |
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36 | echo |
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37 | echo "====================================================" |
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38 | echo "Where do we run ?" $( hostname ) |
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39 | uname -a |
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40 | echo "====================================================" |
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41 | echo |
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42 | fi |
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43 | |
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44 | if [ X${JobType} = XDEB ] ; then |
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45 | echo "DEBUG mode : activation of 'set -vx' mode." |
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46 | set -vx |
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47 | DEBUG_debug=true |
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48 | DEBUG_sys=true |
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49 | fi |
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50 | |
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51 | #==================================================== |
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52 | case $( hostname -s ) in |
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53 | ada*) |
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54 | [ ! X${TaskType} = Xchecking ] && echo "Source machine dependent settings for ada Intel X-64." |
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55 | CENTER=IDRIS |
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56 | SYSTEM=ada |
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57 | . ${libIGCM}/libIGCM_sys/libIGCM_sys_ada.ksh;; |
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58 | curie*) |
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59 | [ ! X${TaskType} = Xchecking ] && echo "Source machine dependent settings for curie Intel X-64." |
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60 | CENTER=TGCC |
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61 | SYSTEM=curie |
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62 | . ${libIGCM}/libIGCM_sys/libIGCM_sys_curie.ksh;; |
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63 | irene*) |
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64 | [ ! X${TaskType} = Xchecking ] && echo "Source machine dependent settings for irene Intel X-64 at TGCC" |
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65 | CENTER=TGCC |
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66 | SYSTEM=irene |
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67 | . ${libIGCM}/libIGCM_sys/libIGCM_sys_irene.ksh;; |
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68 | airain*) |
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69 | [ ! X${TaskType} = Xchecking ] && echo "Source machine dependent settings for airain Intel X-64." |
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70 | CENTER=TGCC |
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71 | SYSTEM=curie |
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72 | . ${libIGCM}/libIGCM_sys/libIGCM_sys_curie.ksh;; |
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73 | asterix*|obelix*) |
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74 | [ ! X${TaskType} = Xchecking ] && echo "Source machine dependent settings for obelix or asterix." |
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75 | CENTER=LSCE |
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76 | SYSTEM=lxiv8 |
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77 | . ${libIGCM}/libIGCM_sys/libIGCM_sys_obelix.ksh;; |
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78 | ciclad*) |
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79 | [ ! X${TaskType} = Xchecking ] && echo "Source machine dependent settings for ciclad for running at ciclad." |
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80 | CENTER=IPSL-ciclad |
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81 | SYSTEM=ifort_CICLAD |
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82 | . ${libIGCM}/libIGCM_sys/libIGCM_sys_ciclad.ksh;; |
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83 | camelot*|loholt1*|loholt2*|merlin*) |
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84 | [ ! X${TaskType} = Xchecking ] && echo "Source machine dependent settings for ciclad for running at climserv." |
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85 | CENTER=IPSL-climserv |
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86 | SYSTEM=ifort_CICLAD |
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87 | . ${libIGCM}/libIGCM_sys/libIGCM_sys_ciclad.ksh;; |
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88 | iitm*) |
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89 | [ ! X${TaskType} = Xchecking ] && echo "Source machine dependent settings for iitm." |
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90 | CENTER=IITM |
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91 | SYSTEM=iitm |
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92 | . ${libIGCM}/libIGCM_sys/libIGCM_sys_iitm.ksh;; |
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93 | *) |
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94 | [ ! X${TaskType} = Xchecking ] && echo "Source machine dependent settings for a default machine." |
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95 | CENTER=DEFAULT |
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96 | SYSTEM=default |
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97 | . ${libIGCM}/libIGCM_sys/libIGCM_sys_default.ksh;; |
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98 | esac |
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99 | |
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100 | # Set default umask (umask is 0027 on some machines : CCRT machine at least) |
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101 | umask 0022 |
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102 | |
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103 | #D--------------------------------------------------------------------== |
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104 | #D- |
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105 | #D- Define IGCM_sys functions that are common on every systems |
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106 | #D- |
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107 | #D--------------------------------------------------------------------== |
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108 | |
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109 | #D-#================================================== |
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110 | #D-function IGCM_sys_RshMaster |
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111 | #D-* Purpose: Connection to frontend machine. |
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112 | #D-* Examples: |
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113 | #D- |
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114 | function IGCM_sys_RshMaster { |
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115 | IGCM_debug_PushStack "IGCM_sys_RshMaster" $@ |
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116 | OUTCOMMAND_PATH=${OUTCOMMAND_PATH} /bin/ksh <<-EOF |
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117 | export libIGCM=${libIGCM} |
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118 | export DEBUG_debug=${DEBUG_debug} |
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119 | . ${libIGCM}/libIGCM_debug/libIGCM_debug.ksh |
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120 | . ${libIGCM}/libIGCM_card/libIGCM_card.ksh |
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121 | ${@} |
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122 | EOF |
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123 | if [ $? -gt 0 ] ; then |
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124 | echo "IGCM_sys_RshMaster : erreur." |
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125 | IGCM_debug_Exit "IGCM_sys_RshMaster" |
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126 | fi |
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127 | IGCM_debug_PopStack "IGCM_sys_RshMaster" |
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128 | } |
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129 | |
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130 | #D-#================================================== |
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131 | #D-function IGCM_sys_RshPost |
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132 | #D-* Purpose: Post-process rsh command |
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133 | #D-* Examples: |
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134 | #D- |
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135 | function IGCM_sys_RshPost { |
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136 | IGCM_debug_PushStack "IGCM_sys_RshPost" $@ |
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137 | if ( $DEBUG_sys ) ; then |
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138 | echo "IGCM_sys_RshPost :" $@ |
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139 | fi |
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140 | # keep standard input (stdin) for the loop onto temporary file |
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141 | cat >${OUTCOMMAND_PATH}/tmp_IGCM_sys_RshPost_$$_${LOGNAME} |
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142 | |
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143 | OUTCOMMAND_PATH=${OUTCOMMAND_PATH} /bin/ksh <${OUTCOMMAND_PATH}/tmp_IGCM_sys_RshPost_$$_${LOGNAME} |
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144 | if [ $? -gt 0 ] ; then |
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145 | echo "IGCM_sys_RshPost : erreur." |
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146 | IGCM_debug_Exit "IGCM_sys_RshPost" |
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147 | fi |
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148 | # delete temporary file |
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149 | \rm ${OUTCOMMAND_PATH}/tmp_IGCM_sys_RshPost_$$_${LOGNAME} |
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150 | |
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151 | # ============ FRONTEND END ============ # |
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152 | |
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153 | # ============ CESIUM START ============ # |
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154 | # typeset NB_ESSAI DELAI status i |
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155 | # if [ "X$( grep rebuild_from tmp_IGCM_sys_RshPost_$$ )" != "X" ] ; then |
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156 | # #little hack so that rebuild submission is done on titane not an cesium |
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157 | # |
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158 | # libIGCM_POST_sed=$( echo $libIGCM_POST | sed 's/\//\\\//g' ) |
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159 | # POST_DIR_sed=$( echo ${POST_DIR} | sed 's/\//\\\//g' ) |
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160 | # sed "s/IGCM_sys_QsubPost/IGCM_sys_Qsub/g" tmp_IGCM_sys_RshPost_$$ > tmp.txt |
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161 | # sed "s/ rebuild_fromWorkdir/ ${libIGCM_POST_sed}\/rebuild_fromWorkdir.job/g" tmp.txt > tmp_IGCM_sys_RshPost_$$ |
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162 | # sed "s/ rebuild_fromArchive/ ${libIGCM_POST_sed}\/rebuild_fromArchive.job/g" tmp_IGCM_sys_RshPost_$$ > tmp.txt |
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163 | # sed "s/Script_Post_Output=/Script_Output=${POST_DIR_sed}\//g" tmp.txt > tmp_IGCM_sys_RshPost_$$ |
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164 | # \mv tmp.txt tmp_IGCM_sys_RshPost_$$ |
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165 | # |
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166 | # echo cat tmp_IGCM_sys_RshPost_$$ AFTER |
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167 | # cat tmp_IGCM_sys_RshPost_$$ |
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168 | # |
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169 | # /bin/ksh <tmp_IGCM_sys_RshPost_$$ |
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170 | # if [ $? -gt 0 ] ; then |
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171 | # echo "IGCM_sys_RshPost : erreur." |
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172 | # IGCM_debug_Exit "IGCM_sys_RshPost" |
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173 | # fi |
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174 | # # delete temporary file |
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175 | # \rm tmp_IGCM_sys_RshPost_$$ |
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176 | # |
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177 | # else |
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178 | # # number of tentative |
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179 | # NB_ESSAI=10 |
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180 | # # time delay between tentative |
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181 | # DELAI=10 |
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182 | # i=0 |
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183 | # while [ $i -ne $NB_ESSAI ] ; do |
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184 | # ssh -t titane996 ssh cesium /bin/ksh <tmp_IGCM_sys_RshPost_$$ |
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185 | # status=$? |
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186 | # if [ ${status} -ne 0 ]; |
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187 | # then |
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188 | # sleep $DELAI |
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189 | # else |
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190 | # break |
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191 | # fi |
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192 | # let i=$i+1 |
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193 | # done |
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194 | # # delete temporary file |
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195 | # \rm tmp_IGCM_sys_RshPost_$$ |
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196 | # |
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197 | # if [ ${status} -gt 0 ] ; then |
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198 | # echo "IGCM_sys_RshPost : erreur." |
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199 | # IGCM_debug_Exit "IGCM_sys_RshPost" |
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200 | # fi |
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201 | # fi |
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202 | |
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203 | # ============ CESIUM END ============ # |
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204 | |
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205 | IGCM_debug_PopStack "IGCM_sys_RshPost" |
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206 | } |
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207 | |
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208 | #D-#================================================== |
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209 | #D-function IGCM_sys_SendMail |
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210 | #D-* Purpose: Send mail when simulation is over |
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211 | #D-* Examples: |
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212 | #D- |
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213 | function IGCM_sys_SendMail { |
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214 | IGCM_debug_PushStack "IGCM_sys_SendMail" $@ |
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215 | if ( $DEBUG_sys ) ; then |
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216 | echo "IGCM_sys_SendMail :" $@ |
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217 | fi |
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218 | |
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219 | if [ X${1} = XAccounting ] ; then |
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220 | status=Accounting |
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221 | mailText=jobAccounting.mail |
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222 | elif ( ${ExitFlag} ) ; then |
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223 | status=failed |
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224 | mailText=jobEnd.mail |
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225 | else |
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226 | status=completed |
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227 | mailText=jobEnd.mail |
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228 | fi |
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229 | |
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230 | # Update selected mail template |
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231 | while read -r line; do |
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232 | eval echo $line >> mail.txt ; |
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233 | done < ${libIGCM}/libIGCM_sys/${mailText} |
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234 | |
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235 | if [ ! -z ${config_UserChoices_MailName} ] ; then |
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236 | mail -s "${config_UserChoices_JobName} ${status}" ${config_UserChoices_MailName} < mail.txt |
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237 | elif [ -f ~/.forward ] ; then |
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238 | mail -s "${config_UserChoices_JobName} ${status}" $( cat ~/.forward ) < mail.txt |
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239 | else |
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240 | mail -s "${config_UserChoices_JobName} ${status}" ${USER} < mail.txt |
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241 | fi |
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242 | |
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243 | sleep 10 |
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244 | rm -f mail.txt |
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245 | |
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246 | IGCM_debug_PopStack "IGCM_sys_SendMail" |
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247 | } |
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248 | |
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249 | #D-#================================================== |
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250 | #D-function IGCM_sys_Mkdir |
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251 | #D-* Purpose: Master locale mkdir command |
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252 | #D-* Examples: |
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253 | #D- |
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254 | function IGCM_sys_Mkdir { |
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255 | IGCM_debug_PushStack "IGCM_sys_Mkdir" $@ |
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256 | if ( $DEBUG_sys ) ; then |
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257 | echo "IGCM_sys_Mkdir :" $@ |
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258 | fi |
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259 | if [ ! -d ${1} ]; then |
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260 | \mkdir -p $1 |
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261 | if [ $? -gt 0 ] ; then |
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262 | echo "IGCM_sys_Mkdir : erreur." |
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263 | IGCM_debug_Exit "IGCM_sys_Mkdir" |
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264 | fi |
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265 | fi |
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266 | # vérification : |
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267 | if [ ! -d ${1} ] ; then |
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268 | echo "IGCM_sys_Mkdir : erreur." |
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269 | IGCM_debug_Exit "IGCM_sys_Mkdir" |
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270 | fi |
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271 | IGCM_debug_PopStack "IGCM_sys_Mkdir" |
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272 | } |
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273 | |
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274 | #D-#================================================== |
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275 | #D-function IGCM_sys_MkdirWork |
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276 | #D-* Purpose: Mkdir on Work |
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277 | #D-* Examples: |
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278 | #D- |
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279 | function IGCM_sys_MkdirWork { |
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280 | IGCM_debug_PushStack "IGCM_sys_MkdirWork" $@ |
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281 | if ( $DEBUG_sys ) ; then |
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282 | echo "IGCM_sys_MkdirWork :" $@ |
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283 | fi |
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284 | #- creation de repertoire sur le serveur fichier |
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285 | if [ ! -d ${1} ]; then |
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286 | \mkdir -p $1 |
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287 | if [ $? -gt 0 ] ; then |
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288 | echo "IGCM_sys_MkdirWork : erreur." |
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289 | IGCM_debug_Exit "IGCM_sys_MkdirWork" |
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290 | fi |
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291 | fi |
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292 | IGCM_debug_PopStack "IGCM_sys_MkdirWork" |
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293 | } |
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294 | |
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295 | #D-#================================================== |
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296 | #D-function IGCM_sys_Cd |
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297 | #D-* Purpose: master cd command |
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298 | #D-* Examples: |
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299 | #D- |
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300 | function IGCM_sys_Cd { |
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301 | IGCM_debug_PushStack "IGCM_sys_Cd" $@ |
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302 | if ( $DEBUG_sys ) ; then |
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303 | echo "IGCM_sys_Cd :" $@ |
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304 | fi |
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305 | \cd $1 |
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306 | if [ $? -gt 0 ] ; then |
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307 | echo "IGCM_sys_Cd : erreur." |
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308 | IGCM_debug_Exit "IGCM_sys_Cd" |
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309 | fi |
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310 | IGCM_debug_PopStack "IGCM_sys_Cd" |
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311 | } |
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312 | |
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313 | #D-#================================================== |
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314 | #D-function IGCM_sys_Chmod |
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315 | #D-* Purpose: Chmod |
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316 | #D-* Examples: |
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317 | #D- |
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318 | function IGCM_sys_Chmod { |
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319 | IGCM_debug_PushStack "IGCM_sys_Chmod" $@ |
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320 | if ( $DEBUG_sys ) ; then |
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321 | echo "IGCM_sys_Chmod :" $@ |
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322 | fi |
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323 | \chmod $@ |
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324 | if [ $? -gt 0 ] ; then |
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325 | echo "IGCM_sys_Chmod : erreur." |
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326 | IGCM_debug_Exit "IGCM_sys_Chmod" |
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327 | fi |
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328 | IGCM_debug_PopStack "IGCM_sys_Chmod" |
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329 | } |
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330 | |
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331 | #D-#================================================== |
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332 | #D-function IGCM_sys_FileSize |
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333 | #D-* Purpose: Filesize |
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334 | #D-* Examples: |
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335 | #D- |
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336 | function IGCM_sys_FileSize { |
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337 | IGCM_debug_PushStack "IGCM_sys_FileSize" $@ |
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338 | |
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339 | typeset sizeF |
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340 | set +A sizeF -- $( ls -la ${1} ) |
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341 | if [ $? -gt 0 ] ; then |
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342 | IGCM_debug_Exit "IGCM_sys_FileSize" |
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343 | fi |
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344 | eval ${2}=${sizeF[4]} |
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345 | |
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346 | IGCM_debug_PopStack "IGCM_sys_FileSize" |
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347 | } |
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348 | |
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349 | #D-#================================================== |
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350 | #D-function IGCM_sys_TestDir |
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351 | #D-* Purpose: Test Directory that must exists |
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352 | #D-* Examples: |
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353 | #D- |
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354 | function IGCM_sys_TestDir { |
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355 | IGCM_debug_PushStack "IGCM_sys_TestDir" $@ |
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356 | if ( $DEBUG_sys ) ; then |
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357 | echo "IGCM_sys_TestDir :" $@ |
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358 | fi |
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359 | typeset ExistFlag |
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360 | ExistFlag=$( [ -d $1 ] && echo 0 || echo 1 ) |
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361 | IGCM_debug_PopStack "IGCM_sys_TestDir" |
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362 | |
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363 | return ${ExistFlag} |
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364 | } |
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365 | |
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366 | #D-#================================================== |
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367 | #D-function IGCM_sys_TestFileBuffer |
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368 | #D-* Purpose: Test file that must NOT EXISTS on Buffer |
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369 | #D-* Examples: |
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370 | #D- |
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371 | function IGCM_sys_TestFileBuffer { |
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372 | IGCM_debug_PushStack "IGCM_sys_TestFileBuffer" $@ |
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373 | typeset ExistFlag |
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374 | ExistFlag=$( [ -f $1 ] && echo 0 || echo 1 ) |
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375 | IGCM_debug_PopStack "IGCM_sys_TestFileBuffer" |
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376 | |
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377 | return ${ExistFlag} |
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378 | } |
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379 | |
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380 | #D-#================================================== |
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381 | #D-function IGCM_sys_CountFileBuffer |
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382 | #D-* Purpose: Count files on Scratch filesystem |
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383 | #D-* Examples: |
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384 | #D- |
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385 | function IGCM_sys_CountFileBuffer { |
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386 | IGCM_debug_PushStack "IGCM_sys_CountFileBuffer" $@ |
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387 | ls ${@} 2>/dev/null | wc -l |
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388 | if [ $? -gt 0 ] ; then |
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389 | echo "IGCM_sys_CountFileBuffer : erreur." |
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390 | fi |
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391 | IGCM_debug_PopStack "IGCM_sys_CountFileBuffer" |
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392 | } |
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393 | |
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394 | #D-#================================================== |
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395 | #D-function IGCM_sys_Tar |
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396 | #D-* Purpose: master tar command |
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397 | #D-* Examples: |
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398 | #D- |
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399 | function IGCM_sys_Tar { |
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400 | IGCM_debug_PushStack "IGCM_sys_Tar" $@ |
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401 | if ( $DEBUG_sys ) ; then |
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402 | echo "IGCM_sys_Tar :" $@ |
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403 | fi |
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404 | \tar cf $@ |
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405 | if [ $? -gt 0 ] ; then |
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406 | echo "IGCM_sys_Tar : erreur." |
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407 | IGCM_debug_Exit "IGCM_sys_Tar" |
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408 | fi |
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409 | IGCM_debug_PopStack "IGCM_sys_Tar" |
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410 | } |
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411 | |
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412 | #D-#================================================== |
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413 | #D-function IGCM_sys_UnTar |
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414 | #D-* Purpose: master un-tar command |
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415 | #D-* Examples: |
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416 | #D- |
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417 | function IGCM_sys_UnTar { |
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418 | IGCM_debug_PushStack "IGCM_sys_UnTar" $@ |
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419 | if ( $DEBUG_sys ) ; then |
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420 | echo "IGCM_sys_UnTar :" $@ |
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421 | fi |
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422 | \tar xvf $1 |
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423 | if [ $? -gt 0 ] ; then |
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424 | echo "IGCM_sys_UnTar : erreur." |
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425 | IGCM_debug_Exit "IGCM_sys_UnTar" |
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426 | fi |
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427 | IGCM_debug_PopStack "IGCM_sys_UnTar" |
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428 | } |
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429 | |
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430 | #D-************************* |
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431 | #D- File transfer functions |
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432 | #D-************************* |
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433 | #D- |
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434 | |
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435 | #D-#================================================== |
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436 | #D-function IGCM_sys_Rsync_out |
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437 | #D-* Purpose: treat return val of rsync |
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438 | #D-* Examples: IGCM_sys_Rsync_out out_RET_rsync |
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439 | #D- Error values and explanations can depend on your system version. |
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440 | function IGCM_sys_Rsync_out { |
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441 | IGCM_debug_PushStack "IGCM_sys_Rsync_out" $@ |
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442 | if ( $DEBUG_sys ) ; then |
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443 | echo "IGCM_sys_UnTar :" $@ |
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444 | fi |
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445 | |
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446 | typeset status |
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447 | status=$1 |
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448 | |
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449 | if [ ! $status ] ; then |
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450 | IGCM_debug_Print 1 "IGCM_sys_Rsync_out need an argument" |
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451 | IGCM_debug_PopStack "IGCM_sys_Rsync_out" |
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452 | return |
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453 | fi |
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454 | |
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455 | case $status in |
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456 | 0) ;; |
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457 | 1) IGCM_debug_Print 1 "rsync error RERR_SYNTAX : Syntax or usage error";; |
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458 | 2) IGCM_debug_Print 1 "rsync error RERR_PROTOCOL : Protocol incompatibility";; |
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459 | 3) IGCM_debug_Print 1 "rsync error RERR_FILESELECT : Errors selecting input/output files, dirs";; |
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460 | 4) IGCM_debug_Print 1 "rsync error RERR_UNSUPPORTED : Requested action not supported." |
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461 | IGCM_debug_Print 1 "An attempt was made to manipulate 64-bit files on a platform that cannot support them" |
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462 | IGCM_debug_Print 1 "Or an option was specified that is supported by the client and not by the server.";; |
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463 | 5) IGCM_debug_Print 1 "rsync error : Error starting client-server protocol";; |
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464 | 10) IGCM_debug_Print 1 "rsync error RERR_SOCKETIO : Error in socket I/O";; |
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465 | 11) IGCM_debug_Print 1 "rsync error RERR_FILEIO: Error in file I/O";; |
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466 | 12) IGCM_debug_Print 1 "rsync error RERR_STREAMIO : Error in rsync protocol data stream";; |
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467 | 13) IGCM_debug_Print 1 "rsync error RERR_MESSAGEIO : Errors with program diagnostics";; |
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468 | 14) IGCM_debug_Print 1 "rsync error RERR_IPC : Error in IPC code";; |
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469 | 20) IGCM_debug_Print 1 "rsync error RERR_SIGNAL : Received SIGUSR1 or SIGINT";; |
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470 | 21) IGCM_debug_Print 1 "rsync error RERR_WAITCHILD : Some error returned by waitpid()";; |
---|
471 | 22) IGCM_debug_Print 1 "rsync error RERR_MALLOC : Error allocating core memory buffers";; |
---|
472 | 23) IGCM_debug_Print 1 "rsync error : Partial transfer due to error";; |
---|
473 | 24) IGCM_debug_Print 1 "rsync error : Partial transfer due to vanished source files";; |
---|
474 | 30) IGCM_debug_Print 1 "rsync error : Timeout in data send/receive";; |
---|
475 | *) IGCM_debug_Print 1 "rsync error : return code of rsync unknown :" $status;; |
---|
476 | esac |
---|
477 | |
---|
478 | IGCM_debug_PopStack "IGCM_sys_Rsync_out" |
---|
479 | } |
---|
480 | |
---|
481 | #D-#================================================== |
---|
482 | #D-function IGCM_sys_Miror_libIGCM |
---|
483 | #D-* Purpose: Mirror libIGCM PATH and lib to frontend |
---|
484 | #D-* Examples: |
---|
485 | #D- |
---|
486 | function IGCM_sys_Mirror_libIGCM { |
---|
487 | IGCM_debug_PushStack "IGCM_sys_Mirror_libIGCM" |
---|
488 | if ( $DEBUG_sys ) ; then |
---|
489 | echo "IGCM_sys_Mirror_libIGCM" |
---|
490 | fi |
---|
491 | |
---|
492 | typeset status |
---|
493 | |
---|
494 | mkdir -p ${HOME}/MIRROR/${PATHlibIGCM} |
---|
495 | |
---|
496 | echo ${RSYNC} ${RSYNC_opt} ${libIGCM} ${HOME}/MIRROR/${PATHlibIGCM} > ${OUTCOMMAND_PATH}/out_command_${LOGIN}.$$ 2>&1 |
---|
497 | ${RSYNC} ${RSYNC_opt} ${libIGCM} ${HOME}/MIRROR/${PATHlibIGCM} >> ${OUTCOMMAND_PATH}/out_command_${LOGIN}.$$ 2>&1 |
---|
498 | status=$? |
---|
499 | |
---|
500 | if [ ${status} -gt 0 ] ; then |
---|
501 | echo "IGCM_sys_Mirror_libIGCM Warning : no libIGCM on frontend." |
---|
502 | cat ${OUTCOMMAND_PATH}/out_command_${LOGIN}.$$ |
---|
503 | fi |
---|
504 | IGCM_debug_PopStack "IGCM_sys_Mirror_libIGCM" |
---|
505 | } |
---|
506 | |
---|
507 | #D-#================================================== |
---|
508 | #D-function IGCM_sys_Cp |
---|
509 | #D-* Purpose: generic cp |
---|
510 | #D-* Examples: |
---|
511 | #D- |
---|
512 | function IGCM_sys_Cp { |
---|
513 | IGCM_debug_PushStack "IGCM_sys_Cp" $@ |
---|
514 | if ( $DEBUG_sys ) ; then |
---|
515 | echo "IGCM_sys_Cp :" $@ |
---|
516 | fi |
---|
517 | |
---|
518 | typeset status |
---|
519 | |
---|
520 | echo cp $@ > ${OUTCOMMAND_PATH}/out_command_${LOGIN}.$$ 2>&1 |
---|
521 | \cp $@ >> ${OUTCOMMAND_PATH}/out_command_${LOGIN}.$$ 2>&1 |
---|
522 | status=$? |
---|
523 | |
---|
524 | if [ ${status} -gt 0 ] ; then |
---|
525 | echo "IGCM_sys_Cp : error code ${status}" |
---|
526 | cat ${OUTCOMMAND_PATH}/out_command_${LOGIN}.$$ |
---|
527 | IGCM_debug_Exit "IGCM_sys_Cp" |
---|
528 | else |
---|
529 | \rm ${OUTCOMMAND_PATH}/out_command_${LOGIN}.$$ |
---|
530 | fi |
---|
531 | IGCM_debug_PopStack "IGCM_sys_Cp" |
---|
532 | } |
---|
533 | |
---|
534 | #D-#================================================== |
---|
535 | #D-function IGCM_sys_Rm |
---|
536 | #D-* Purpose: generic rm |
---|
537 | #D-* Examples: |
---|
538 | #D- |
---|
539 | function IGCM_sys_Rm { |
---|
540 | IGCM_debug_PushStack "IGCM_sys_Rm" $@ |
---|
541 | if ( $DEBUG_sys ) ; then |
---|
542 | echo "IGCM_sys_Rm :" $@ |
---|
543 | fi |
---|
544 | |
---|
545 | typeset status |
---|
546 | |
---|
547 | echo rm $@ > ${OUTCOMMAND_PATH}/out_command_${LOGIN}.$$ 2>&1 |
---|
548 | \rm $@ >> ${OUTCOMMAND_PATH}/out_command_${LOGIN}.$$ 2>&1 |
---|
549 | status=$? |
---|
550 | |
---|
551 | if [ ${status} -gt 0 ] ; then |
---|
552 | echo "IGCM_sys_Rm : error code ${status}" |
---|
553 | cat ${OUTCOMMAND_PATH}/out_command_${LOGIN}.$$ |
---|
554 | IGCM_debug_Exit "IGCM_sys_Rm" |
---|
555 | else |
---|
556 | \rm ${OUTCOMMAND_PATH}/out_command_${LOGIN}.$$ |
---|
557 | fi |
---|
558 | IGCM_debug_PopStack "IGCM_sys_Rm" |
---|
559 | } |
---|
560 | |
---|
561 | #D-#================================================== |
---|
562 | #D-function IGCM_sys_Mv |
---|
563 | #D-* Purpose: generic move |
---|
564 | #D-* Examples: |
---|
565 | #D- |
---|
566 | function IGCM_sys_Mv { |
---|
567 | IGCM_debug_PushStack "IGCM_sys_Mv" $@ |
---|
568 | if ( $DEBUG_sys ) ; then |
---|
569 | echo "IGCM_sys_Mv :" $@ |
---|
570 | fi |
---|
571 | |
---|
572 | if [ $DRYRUN = 0 ]; then |
---|
573 | |
---|
574 | typeset status |
---|
575 | |
---|
576 | echo mv $@ > ${OUTCOMMAND_PATH}/out_command_${LOGIN}.$$ 2>&1 |
---|
577 | \mv $@ >> ${OUTCOMMAND_PATH}/out_command_${LOGIN}.$$ 2>&1 |
---|
578 | status=$? |
---|
579 | |
---|
580 | if [ ${status} -gt 0 ] ; then |
---|
581 | echo "IGCM_sys_Mv : error code ${status}" |
---|
582 | cat ${OUTCOMMAND_PATH}/out_command_${LOGIN}.$$ |
---|
583 | IGCM_debug_Exit "IGCM_sys_Mv" |
---|
584 | else |
---|
585 | \rm ${OUTCOMMAND_PATH}/out_command_${LOGIN}.$$ |
---|
586 | fi |
---|
587 | fi |
---|
588 | IGCM_debug_PopStack "IGCM_sys_Mv" |
---|
589 | } |
---|
590 | |
---|
591 | #D-#================================================== |
---|
592 | #D-function IGCM_sys_Get_Master |
---|
593 | #D-* Purpose: Copy a complete directory from MASTER filesystem |
---|
594 | #D-* Examples: |
---|
595 | #D- |
---|
596 | function IGCM_sys_Get_Master { |
---|
597 | IGCM_debug_PushStack "IGCM_sys_Get_Master" $@ |
---|
598 | if ( $DEBUG_sys ) ; then |
---|
599 | echo "IGCM_sys_Get_Master :" $@ |
---|
600 | fi |
---|
601 | if [ $DRYRUN = 0 ]; then |
---|
602 | if ( [ ! -d ${1} ] && [ ! -f ${1} ] ) ; then |
---|
603 | echo "WARNING : IGCM_sys_Get_Master ${1} DOES NOT EXIST ." |
---|
604 | IGCM_debug_PopStack "IGCM_sys_Get_Master" |
---|
605 | return |
---|
606 | fi |
---|
607 | |
---|
608 | typeset NB_ESSAI DELAI status i |
---|
609 | # number of tentative |
---|
610 | NB_ESSAI=3 |
---|
611 | # time delay between tentative |
---|
612 | DELAI=2 |
---|
613 | |
---|
614 | i=0 |
---|
615 | while [ $i -lt $NB_ESSAI ] ; do |
---|
616 | \cp -urL $1 $2 > ${OUTCOMMAND_PATH}/out_command_${LOGIN}.$$ 2>&1 |
---|
617 | status=$? |
---|
618 | if [ ${status} -gt 0 ]; then |
---|
619 | IGCM_debug_Print 2 "IGCM_sys_Get_Master : cp failed error code ${status} ${i}/${NB_ESSAI}" |
---|
620 | IGCM_debug_Print 2 "IGCM_sys_Get_Master : sleep ${DELAI} seconds and try again." |
---|
621 | sleep $DELAI |
---|
622 | else |
---|
623 | break |
---|
624 | fi |
---|
625 | (( i = i + 1 )) |
---|
626 | done |
---|
627 | |
---|
628 | if [ ${status} -gt 0 ] ; then |
---|
629 | echo "IGCM_sys_Get_Master : error." |
---|
630 | cat ${OUTCOMMAND_PATH}/out_command_${LOGIN}.$$ |
---|
631 | IGCM_debug_Exit "IGCM_sys_Get_Master" |
---|
632 | else |
---|
633 | \rm ${OUTCOMMAND_PATH}/out_command_${LOGIN}.$$ |
---|
634 | fi |
---|
635 | fi |
---|
636 | IGCM_debug_PopStack "IGCM_sys_Get_Master" |
---|
637 | } |
---|
638 | |
---|
639 | #==================================================== |
---|
640 | #- Call IGCM_sys_Mirror_libIGCM now ! |
---|
641 | if ( $MirrorlibIGCM ) ; then |
---|
642 | IGCM_sys_Mirror_libIGCM |
---|
643 | fi |
---|
644 | |
---|
645 | #D-#================================================== |
---|
646 | #D-function IGCM_sys_PutBuffer_Rest |
---|
647 | #D-* Purpose: Put computied restarts on ${SCRATCHDIR}. |
---|
648 | #D- File and target directory must exist. |
---|
649 | #D-* Examples: |
---|
650 | #D- |
---|
651 | function IGCM_sys_PutBuffer_Rest { |
---|
652 | IGCM_debug_PushStack "IGCM_sys_PutBuffer_Rest" $@ |
---|
653 | if ( $DEBUG_sys ) ; then |
---|
654 | echo "IGCM_sys_PutBuffer_Rest :" $@ |
---|
655 | fi |
---|
656 | if [ $DRYRUN = 0 ]; then |
---|
657 | if [ ! -f ${1} ] ; then |
---|
658 | echo "ERROR : IGCM_sys_PutBuffer_Rest ${1} DOES NOT EXIST ." |
---|
659 | IGCM_debug_Exit "IGCM_sys_PutBuffer_Rest" |
---|
660 | fi |
---|
661 | |
---|
662 | typeset status |
---|
663 | # |
---|
664 | # USUAL WAY |
---|
665 | \cp $1 $2 > ${OUTCOMMAND_PATH}/out_command_${LOGIN}.$$ 2>&1 |
---|
666 | status=$? |
---|
667 | |
---|
668 | if [ ${status} -gt 0 ] ; then |
---|
669 | echo "IGCM_sys_PutBuffer_Rest : error code ${status}" |
---|
670 | [ -f ${2} ] && ls -l ${2} |
---|
671 | [ -f ${2}/${1} ] && ls -l ${2}/${1} |
---|
672 | cat ${OUTCOMMAND_PATH}/out_command_${LOGIN}.$$ |
---|
673 | IGCM_debug_Exit "IGCM_sys_PutBuffer_Rest" |
---|
674 | else |
---|
675 | |
---|
676 | if [ X${JobType} = XRUN ] ; then |
---|
677 | [ -f ${2} ] && IGCM_sys_Chmod 444 ${2} |
---|
678 | [ -f ${2}/${1} ] && IGCM_sys_Chmod 444 ${2}/${1} |
---|
679 | fi |
---|
680 | |
---|
681 | \rm ${OUTCOMMAND_PATH}/out_command_${LOGIN}.$$ |
---|
682 | fi |
---|
683 | fi |
---|
684 | IGCM_debug_PopStack "IGCM_sys_PutBuffer_Rest" |
---|
685 | } |
---|
686 | |
---|
687 | #D-#================================================== |
---|
688 | #D-function IGCM_sys_PrepareTaredRestart |
---|
689 | #D-* Purpose: Prepare tared restart to be access by computing job. |
---|
690 | #D-* Examples: |
---|
691 | #D- |
---|
692 | function IGCM_sys_PrepareTaredRestart { |
---|
693 | IGCM_debug_PushStack "IGCM_sys_PrepareTaredRestart" $@ |
---|
694 | if [ $DRYRUN = 0 ]; then |
---|
695 | [ ! -f $( basename $1 ) ] && IGCM_sys_Get $1 . |
---|
696 | fi |
---|
697 | IGCM_debug_PopStack "IGCM_sys_PrepareTaredRestart" |
---|
698 | } |
---|
699 | |
---|
700 | #D-#================================================== |
---|
701 | #D-function IGCM_sys_PutBuffer_Out |
---|
702 | #D-* Purpose: Copy a file on the buffer filesystem after having chmod it in readonly |
---|
703 | #D-* Examples: |
---|
704 | #D- |
---|
705 | function IGCM_sys_PutBuffer_Out { |
---|
706 | IGCM_debug_PushStack "IGCM_sys_PutBuffer_Out" $@ |
---|
707 | if ( $DEBUG_sys ) ; then |
---|
708 | echo "IGCM_sys_PutBuffer_Out :" $@ |
---|
709 | fi |
---|
710 | |
---|
711 | typeset NB_ESSAI DELAI status i exist skip |
---|
712 | typeset fileDeviceNumberInHex directoryDeviceNumberInHex |
---|
713 | |
---|
714 | # number of tentative |
---|
715 | NB_ESSAI=3 |
---|
716 | # time delay between tentative |
---|
717 | DELAI=2 |
---|
718 | |
---|
719 | if [ $DRYRUN = 0 ]; then |
---|
720 | if [ ! -f ${1} ] ; then |
---|
721 | echo "WARNING : IGCM_sys_PutBuffer_Out ${1} DOES NOT EXIST ." |
---|
722 | IGCM_debug_PopStack "IGCM_sys_PutBuffer_Out" |
---|
723 | return 1 |
---|
724 | fi |
---|
725 | # |
---|
726 | IGCM_sys_Mkdir $( dirname $2 ) |
---|
727 | # |
---|
728 | |
---|
729 | exist=false |
---|
730 | skip=false |
---|
731 | if [ -f $2 ] ; then |
---|
732 | IGCM_debug_Print 1 "$2 already exist" |
---|
733 | exist=true |
---|
734 | if [ "X$( diff $1 $2 )" = X ] ; then |
---|
735 | IGCM_debug_Print 2 "$1 and $2 are the same file, we skip the copy" |
---|
736 | status=0 |
---|
737 | skip=true |
---|
738 | else |
---|
739 | IGCM_debug_Print 2 "$1 and $2 are not the same file, we force the copy" |
---|
740 | skip=false |
---|
741 | fi |
---|
742 | fi |
---|
743 | # |
---|
744 | if ( [ X${exist} = Xtrue ] && [ X${skip} = Xfalse ] ) ; then |
---|
745 | IGCM_sys_Chmod u+w $2 |
---|
746 | fi |
---|
747 | |
---|
748 | if [ X${skip} = Xfalse ] ; then |
---|
749 | i=0 |
---|
750 | while [ $i -lt $NB_ESSAI ] ; do |
---|
751 | # Identify file system |
---|
752 | fileDeviceNumberInHex=$( stat -c %d $1 ) |
---|
753 | status=$? |
---|
754 | if [ ${status} -gt 0 ] ; then |
---|
755 | IGCM_debug_Exit "IGCM_sys_PutBuffer_Out" |
---|
756 | fi |
---|
757 | # Identify file system |
---|
758 | directoryDeviceNumberInHex=$( stat -c %d $( dirname $2 ) ) |
---|
759 | status=$? |
---|
760 | if [ ${status} -gt 0 ] ; then |
---|
761 | IGCM_debug_Exit "IGCM_sys_PutBuffer_Out" |
---|
762 | fi |
---|
763 | |
---|
764 | if [ ${fileDeviceNumberInHex} -ne ${directoryDeviceNumberInHex} ] ; then |
---|
765 | # They are not on the same device. USUAL WAY |
---|
766 | \cp $1 $2 > ${OUTCOMMAND_PATH}/out_command_${LOGIN}.$$ 2>&1 |
---|
767 | status=$? |
---|
768 | else |
---|
769 | # They are on the same device. USUAL WAY |
---|
770 | \mv $1 $2 > ${OUTCOMMAND_PATH}/out_command_${LOGIN}.$$ 2>&1 |
---|
771 | status=$? |
---|
772 | fi |
---|
773 | if [ ${status} -gt 0 ]; then |
---|
774 | IGCM_debug_Print 2 "IGCM_sys_PutBuffer_Out : cp failed error code ${status} ${i}/${NB_ESSAI}" |
---|
775 | IGCM_debug_Print 2 "IGCM_sys_PutBuffer_Out : sleep ${DELAI} seconds and try again." |
---|
776 | [ -f ${2} ] && ls -l ${2} |
---|
777 | [ -f ${2}/${1} ] && ls -l ${2}/${1} |
---|
778 | sleep $DELAI |
---|
779 | else |
---|
780 | break |
---|
781 | fi |
---|
782 | (( i = i + 1 )) |
---|
783 | done |
---|
784 | fi |
---|
785 | |
---|
786 | if [ ${status} -gt 0 ] ; then |
---|
787 | echo "IGCM_sys_PutBuffer_Out : error." |
---|
788 | [ -f ${2} ] && ls -l ${2} |
---|
789 | [ -f ${2}/${1} ] && ls -l ${2}/${1} |
---|
790 | cat ${OUTCOMMAND_PATH}/out_command_${LOGIN}.$$ |
---|
791 | IGCM_debug_Exit "IGCM_sys_PutBuffer_Out" |
---|
792 | else |
---|
793 | |
---|
794 | if [ X${JobType} = XRUN ] ; then |
---|
795 | if [ X${3} = X ] ; then |
---|
796 | [ -f ${2} ] && IGCM_sys_Chmod 444 ${2} |
---|
797 | [ -f ${2}/${1} ] && IGCM_sys_Chmod 444 ${2}/${1} |
---|
798 | fi |
---|
799 | fi |
---|
800 | |
---|
801 | \rm ${OUTCOMMAND_PATH}/out_command_${LOGIN}.$$ |
---|
802 | fi |
---|
803 | fi |
---|
804 | IGCM_debug_PopStack "IGCM_sys_PutBuffer_Out" |
---|
805 | return 0 |
---|
806 | } |
---|
807 | |
---|
808 | #D-#================================================== |
---|
809 | #D-function IGCM_sys_GetBuffer |
---|
810 | #D-* Purpose: Get a file from ${SCRATCHDIR} |
---|
811 | #D-* Examples: IGCM_sys_GetBuffer myfile /destpath/myfile_with_PREFIX |
---|
812 | #D- IGCM_sys_GetBuffer /l Array_contain_myfiles /destpath/ |
---|
813 | function IGCM_sys_GetBuffer { |
---|
814 | IGCM_debug_PushStack "IGCM_sys_GetBuffer" $@ |
---|
815 | |
---|
816 | typeset DEST buf_liste target file_work |
---|
817 | typeset NB_ESSAI DELAI status i |
---|
818 | |
---|
819 | if ( $DEBUG_sys ) ; then |
---|
820 | echo "IGCM_sys_GetBuffer :" $@ |
---|
821 | fi |
---|
822 | |
---|
823 | # number of tentative |
---|
824 | NB_ESSAI=3 |
---|
825 | # time delay between tentative |
---|
826 | DELAI=2 |
---|
827 | |
---|
828 | if [ $DRYRUN -le 2 ]; then |
---|
829 | if [ X${1} = X'/l' ] ; then |
---|
830 | eval set +A buf_liste \${${2}} |
---|
831 | else |
---|
832 | eval set +A buf_liste ${1} |
---|
833 | fi |
---|
834 | eval DEST=\${${#}} |
---|
835 | |
---|
836 | #USUAL WAY |
---|
837 | if [ X${1} = X'/l' ] ; then |
---|
838 | for target in ${buf_liste[*]} ; do |
---|
839 | local_file=$( basename ${target} ) |
---|
840 | i=0 |
---|
841 | while [ $i -lt $NB_ESSAI ] ; do |
---|
842 | \cp ${target} ${DEST}/${local_file} >> ${OUTCOMMAND_PATH}/out_command_${LOGIN}.$$ 2>&1 |
---|
843 | status=$? |
---|
844 | if [ ${status} -gt 0 ]; then |
---|
845 | IGCM_debug_Print 2 "IGCM_sys_GetBuffer : cp failed error code ${status} ${i}/${NB_ESSAI}" |
---|
846 | IGCM_debug_Print 2 "IGCM_sys_GetBuffer : sleep ${DELAI} seconds and try again." |
---|
847 | sleep $DELAI |
---|
848 | else |
---|
849 | break |
---|
850 | fi |
---|
851 | (( i = i + 1 )) |
---|
852 | done |
---|
853 | if [ ${status} -gt 0 ] ; then |
---|
854 | echo "IGCM_sys_Get : error" |
---|
855 | cat ${OUTCOMMAND_PATH}/out_command_${LOGIN}.$$ |
---|
856 | \rm ${OUTCOMMAND_PATH}/out_command_${LOGIN}.$$ |
---|
857 | IGCM_debug_Exit "IGCM_sys_GetBuffer" |
---|
858 | else |
---|
859 | \rm ${OUTCOMMAND_PATH}/out_command_${LOGIN}.$$ |
---|
860 | fi |
---|
861 | done |
---|
862 | else |
---|
863 | i=0 |
---|
864 | while [ $i -lt $NB_ESSAI ] ; do |
---|
865 | \cp ${buf_liste} ${DEST} >> ${OUTCOMMAND_PATH}/out_command_${LOGIN}.$$ 2>&1 |
---|
866 | status=$? |
---|
867 | if [ ${status} -gt 0 ]; then |
---|
868 | IGCM_debug_Print 2 "IGCM_sys_GetBuffer : cp failed error code ${status} ${i}/${NB_ESSAI}" |
---|
869 | IGCM_debug_Print 2 "IGCM_sys_GetBuffer : sleep ${DELAI} seconds and try again." |
---|
870 | sleep $DELAI |
---|
871 | else |
---|
872 | break |
---|
873 | fi |
---|
874 | (( i = i + 1 )) |
---|
875 | done |
---|
876 | if [ ${status} -gt 0 ] ; then |
---|
877 | echo "IGCM_sys_Get : error" |
---|
878 | cat ${OUTCOMMAND_PATH}/out_command_${LOGIN}.$$ |
---|
879 | \rm ${OUTCOMMAND_PATH}/out_command_${LOGIN}.$$ |
---|
880 | IGCM_debug_Exit "IGCM_sys_GetBuffer" |
---|
881 | else |
---|
882 | \rm ${OUTCOMMAND_PATH}/out_command_${LOGIN}.$$ |
---|
883 | fi |
---|
884 | fi |
---|
885 | fi |
---|
886 | IGCM_debug_PopStack "IGCM_sys_GetBuffer" |
---|
887 | } |
---|
888 | |
---|
889 | #D-#================================================== |
---|
890 | #D-function IGCM_sys_GetDate_FichWork |
---|
891 | #D-* Purpose: donne la date filesys d'un fichier sur le filesystem WORK |
---|
892 | #D-* Examples: |
---|
893 | #D- |
---|
894 | function IGCM_sys_GetDate_FichWork { |
---|
895 | IGCM_debug_PushStack "IGCM_sys_GetDate_FichWork" $@ |
---|
896 | if ( $DEBUG_sys ) ; then |
---|
897 | echo "IGCM_sys_GetDate_FichWork :" $@ |
---|
898 | fi |
---|
899 | |
---|
900 | if [ $# -ge 3 ] ; then |
---|
901 | mode=$3 |
---|
902 | TimeStyle=$4 |
---|
903 | else |
---|
904 | mode="default" |
---|
905 | TimeStyle="%Y%m%d%H%M%S" |
---|
906 | fi |
---|
907 | |
---|
908 | typeset dateF |
---|
909 | set +A dateF -- $( ls -l --full-time --time-style=+"${TimeStyle}" ${1} ) |
---|
910 | |
---|
911 | case $mode in |
---|
912 | "default") |
---|
913 | eval ${2}=${dateF[5]} |
---|
914 | ;; |
---|
915 | "SplitFields") |
---|
916 | eval ${2}="${dateF[5]}\ ${dateF[6]}" |
---|
917 | ;; |
---|
918 | esac |
---|
919 | |
---|
920 | # donne la date filesys d'un fichier sur la machine work |
---|
921 | IGCM_debug_PopStack "IGCM_sys_GetDate_FichWork" |
---|
922 | } |
---|
923 | |
---|
924 | #D-#================================================== |
---|
925 | #D-function IGCM_sys_rebuild |
---|
926 | #D-* Purpose: rebuild parallel files |
---|
927 | #D-* Examples: |
---|
928 | #D- |
---|
929 | function IGCM_sys_rebuild { |
---|
930 | IGCM_debug_PushStack "IGCM_sys_rebuild" $@ |
---|
931 | if ( $DEBUG_sys ) ; then |
---|
932 | echo "IGCM_sys_rebuild :" $@ |
---|
933 | fi |
---|
934 | |
---|
935 | typeset NB_ESSAI DELAI status i firstArg |
---|
936 | # number of tentative |
---|
937 | NB_ESSAI=3 |
---|
938 | # time delay between tentative |
---|
939 | DELAI=2 |
---|
940 | |
---|
941 | i=0 |
---|
942 | while [ $i -lt $NB_ESSAI ] ; do |
---|
943 | rebuild -f -o $@ > ${OUTCOMMAND_PATH}/out_command_${LOGIN}.$$ 2>&1 |
---|
944 | status=$? |
---|
945 | if [ ${status} -gt 0 ] ; then |
---|
946 | IGCM_debug_Print 2 "IGCM_sys_rebuild : error code ${status}" |
---|
947 | cat ${OUTCOMMAND_PATH}/out_command_${LOGIN}.$$ |
---|
948 | \rm ${OUTCOMMAND_PATH}/out_command_${LOGIN}.$$ |
---|
949 | IGCM_debug_Print 2 "IGCM_sys_rebuild : ${i}/${NB_ESSAI} sleep ${DELAI} seconds and try again." |
---|
950 | firstArg=${1} |
---|
951 | \rm ${firstArg} |
---|
952 | sleep $DELAI |
---|
953 | else |
---|
954 | \rm ${OUTCOMMAND_PATH}/out_command_${LOGIN}.$$ |
---|
955 | break |
---|
956 | fi |
---|
957 | (( i = i + 1 )) |
---|
958 | done |
---|
959 | |
---|
960 | if [ ${status} -gt 0 ] ; then |
---|
961 | echo "IGCM_sys_rebuild : rebuild error code is ${status}" |
---|
962 | IGCM_debug_Exit "rebuild" |
---|
963 | fi |
---|
964 | |
---|
965 | IGCM_debug_PopStack "IGCM_sys_rebuild" |
---|
966 | } |
---|
967 | |
---|
968 | #D-#================================================== |
---|
969 | #D-function IGCM_sys_rebuild_station |
---|
970 | #D-* Purpose: rebuild parallel files describing station |
---|
971 | #D-* Examples: |
---|
972 | #D- |
---|
973 | function IGCM_sys_rebuild_station { |
---|
974 | IGCM_debug_PushStack "IGCM_sys_rebuild_station" $@ |
---|
975 | typeset i list_opt file_in file_out prefix_invert list_invert |
---|
976 | if ( $DEBUG_sys ) ; then |
---|
977 | echo "IGCM_sys_rebuild_station :" $@ |
---|
978 | fi |
---|
979 | |
---|
980 | # Station re-ordering is too expansive to be run within libIGCM |
---|
981 | # This is due to (ncpdq - nrcat - ncpdq) I/O sequence. |
---|
982 | # This re-ordering must be done "in memory" by the cmorization process |
---|
983 | |
---|
984 | # Only LMDZ text output contains the exact ordering of the station. |
---|
985 | # We isolate this in the code below: |
---|
986 | # 0 38 -157.5000000000000 70.98591549295774 |
---|
987 | # 0 54 27.49999999999999 67.18309859154928 |
---|
988 | # 0 56 -62.50000000000001 82.39436619718309 |
---|
989 | # 0 79 12.49999999999999 78.59154929577466 |
---|
990 | # 0 116 -165.0000000000000 76.05633802816901 |
---|
991 | # 0 117 130.0000000000000 70.98591549295774 |
---|
992 | # 0 118 110.0000000000000 87.46478873239437 |
---|
993 | # 1 40 4.999999999999995 51.97183098591550 |
---|
994 | |
---|
995 | list_opt=$@ |
---|
996 | |
---|
997 | # Invert Axis : t,x -> x,t |
---|
998 | # t,pres,x -> x,t,pres |
---|
999 | # So that we can concatenate along x |
---|
1000 | i=0 |
---|
1001 | for file_in in ${list_opt} ; do |
---|
1002 | (( i = i + 1)) |
---|
1003 | [ ${i} = 1 ] && file_out=${file_in} && continue |
---|
1004 | # detect time counter and do the job only if present |
---|
1005 | var_unlim=$(ncdump -h ${file_in} | grep UNLIMITED | cut -d ' ' -f 1 | sed -e 's/^[ \t]*//' -e 's/[ \t]*$//') |
---|
1006 | if [ X${var_unlim} = Xtime_counter ] ; then |
---|
1007 | prefix_invert=$( basename ${file_in} .nc ) |
---|
1008 | IGCM_sys_ncpdq -a x,time_counter -a x,time_counter,presnivs ${file_in} ${prefix_invert}_xt.nc |
---|
1009 | list_invert[${#list_invert[*]}]=${prefix_invert}_xt.nc |
---|
1010 | fi |
---|
1011 | done |
---|
1012 | |
---|
1013 | # Concatenate |
---|
1014 | IGCM_sys_ncrcat ${list_invert[*]} histstn_xt.nc |
---|
1015 | |
---|
1016 | # Re-ivert file |
---|
1017 | IGCM_sys_ncpdq -a time_counter,x -a time_counter,presnivs,x histstn_xt.nc ${file_out} |
---|
1018 | |
---|
1019 | IGCM_debug_PopStack "IGCM_sys_rebuild_station" |
---|
1020 | } |
---|
1021 | |
---|
1022 | ############################################################## |
---|
1023 | # NCO OPERATOR |
---|
1024 | |
---|
1025 | #D-#================================================== |
---|
1026 | #D-function IGCM_sys_ncap2 |
---|
1027 | #D-* Purpose: encapsulate ncap2 call so as to manage error code and retry |
---|
1028 | #D-* Examples: |
---|
1029 | #D- |
---|
1030 | function IGCM_sys_ncap2 { |
---|
1031 | IGCM_debug_PushStack "IGCM_sys_ncap2" $@ |
---|
1032 | if ( $DEBUG_sys ) ; then |
---|
1033 | echo "IGCM_sys_ncap2 :" $@ |
---|
1034 | fi |
---|
1035 | |
---|
1036 | typeset NB_ESSAI DELAI status i |
---|
1037 | # number of tentative |
---|
1038 | NB_ESSAI=3 |
---|
1039 | # time delay between tentative |
---|
1040 | DELAI=2 |
---|
1041 | |
---|
1042 | i=0 |
---|
1043 | while [ $i -lt $NB_ESSAI ] ; do |
---|
1044 | ncap2 -C --buffer_size 838860800 "$@" > ${OUTCOMMAND_PATH}/out_command_${LOGIN}.$$ 2>&1 |
---|
1045 | status=$? |
---|
1046 | if [ ${status} -gt 0 ] ; then |
---|
1047 | IGCM_debug_Print 2 "IGCM_sys_ncap2 : error code ${status}" |
---|
1048 | cat ${OUTCOMMAND_PATH}/out_command_${LOGIN}.$$ |
---|
1049 | \rm ${OUTCOMMAND_PATH}/out_command_${LOGIN}.$$ |
---|
1050 | IGCM_debug_Print 2 "IGCM_sys_ncap2 : ${i}/${NB_ESSAI} sleep ${DELAI} seconds and try again." |
---|
1051 | sleep $DELAI |
---|
1052 | else |
---|
1053 | \rm ${OUTCOMMAND_PATH}/out_command_${LOGIN}.$$ |
---|
1054 | break |
---|
1055 | fi |
---|
1056 | (( i = i + 1 )) |
---|
1057 | done |
---|
1058 | |
---|
1059 | if [ ${status} -gt 0 ] ; then |
---|
1060 | echo "IGCM_sys_ncap2 : ncap2 error" |
---|
1061 | IGCM_debug_Exit "ncap2" |
---|
1062 | fi |
---|
1063 | |
---|
1064 | IGCM_debug_PopStack "IGCM_sys_ncap2" |
---|
1065 | } |
---|
1066 | |
---|
1067 | #D-#================================================== |
---|
1068 | #D-function IGCM_sys_ncatted |
---|
1069 | #D-* Purpose: encapsulate ncatted call so as to manage error code and retry |
---|
1070 | #D-* Examples: |
---|
1071 | #D- |
---|
1072 | function IGCM_sys_ncatted { |
---|
1073 | IGCM_debug_PushStack "IGCM_sys_ncatted" $@ |
---|
1074 | if ( $DEBUG_sys ) ; then |
---|
1075 | echo "IGCM_sys_ncatted :" $@ |
---|
1076 | fi |
---|
1077 | |
---|
1078 | typeset NB_ESSAI DELAI status i |
---|
1079 | # number of tentative |
---|
1080 | NB_ESSAI=3 |
---|
1081 | # time delay between tentative |
---|
1082 | DELAI=2 |
---|
1083 | |
---|
1084 | i=0 |
---|
1085 | while [ $i -lt $NB_ESSAI ] ; do |
---|
1086 | ncatted "$@" > ${OUTCOMMAND_PATH}/out_command_${LOGIN}.$$ 2>&1 |
---|
1087 | status=$? |
---|
1088 | if [ ${status} -gt 0 ] ; then |
---|
1089 | IGCM_debug_Print 2 "IGCM_sys_ncatted : error code ${status}" |
---|
1090 | cat ${OUTCOMMAND_PATH}/out_command_${LOGIN}.$$ |
---|
1091 | \rm ${OUTCOMMAND_PATH}/out_command_${LOGIN}.$$ |
---|
1092 | IGCM_debug_Print 2 "IGCM_sys_ncatted : ${i}/${NB_ESSAI} sleep ${DELAI} seconds and try again." |
---|
1093 | sleep $DELAI |
---|
1094 | else |
---|
1095 | \rm ${OUTCOMMAND_PATH}/out_command_${LOGIN}.$$ |
---|
1096 | break |
---|
1097 | fi |
---|
1098 | (( i = i + 1 )) |
---|
1099 | done |
---|
1100 | |
---|
1101 | if [ ${status} -gt 0 ] ; then |
---|
1102 | echo "IGCM_sys_ncatted : ncatted error" |
---|
1103 | IGCM_debug_Exit "ncatted" |
---|
1104 | fi |
---|
1105 | |
---|
1106 | IGCM_debug_PopStack "IGCM_sys_ncatted" |
---|
1107 | } |
---|
1108 | |
---|
1109 | #D-#================================================== |
---|
1110 | #D-function IGCM_sys_ncbo |
---|
1111 | #D-* Purpose: encapsulate ncbo call so as to manage error code and retry |
---|
1112 | #D-* Examples: |
---|
1113 | #D- |
---|
1114 | function IGCM_sys_ncbo { |
---|
1115 | IGCM_debug_PushStack "IGCM_sys_ncbo" $@ |
---|
1116 | if ( $DEBUG_sys ) ; then |
---|
1117 | echo "IGCM_sys_ncbo :" $@ |
---|
1118 | fi |
---|
1119 | |
---|
1120 | typeset NB_ESSAI DELAI status i |
---|
1121 | # number of tentative |
---|
1122 | NB_ESSAI=3 |
---|
1123 | # time delay between tentative |
---|
1124 | DELAI=2 |
---|
1125 | |
---|
1126 | i=0 |
---|
1127 | while [ $i -lt $NB_ESSAI ] ; do |
---|
1128 | ncbo -C --buffer_size 838860800 $@ > ${OUTCOMMAND_PATH}/out_command_${LOGIN}.$$ 2>&1 |
---|
1129 | status=$? |
---|
1130 | if [ ${status} -gt 0 ] ; then |
---|
1131 | IGCM_debug_Print 2 "IGCM_sys_ncbo : error code ${status}" |
---|
1132 | cat ${OUTCOMMAND_PATH}/out_command_${LOGIN}.$$ |
---|
1133 | \rm ${OUTCOMMAND_PATH}/out_command_${LOGIN}.$$ |
---|
1134 | IGCM_debug_Print 2 "IGCM_sys_ncbo : ${i}/${NB_ESSAI} sleep ${DELAI} seconds and try again." |
---|
1135 | sleep $DELAI |
---|
1136 | else |
---|
1137 | \rm ${OUTCOMMAND_PATH}/out_command_${LOGIN}.$$ |
---|
1138 | break |
---|
1139 | fi |
---|
1140 | (( i = i + 1 )) |
---|
1141 | done |
---|
1142 | |
---|
1143 | if [ ${status} -gt 0 ] ; then |
---|
1144 | echo "IGCM_sys_ncbo : ncbo error" |
---|
1145 | IGCM_debug_Exit "ncbo" |
---|
1146 | fi |
---|
1147 | |
---|
1148 | IGCM_debug_PopStack "IGCM_sys_ncbo" |
---|
1149 | } |
---|
1150 | |
---|
1151 | #D-#================================================== |
---|
1152 | #D-function IGCM_sys_ncdif |
---|
1153 | #D-* Purpose: encapsulate ncdiff call so as to manage error code and retry |
---|
1154 | #D-* Examples: |
---|
1155 | #D- |
---|
1156 | function IGCM_sys_ncdiff { |
---|
1157 | IGCM_debug_PushStack "IGCM_sys_ncdiff" $@ |
---|
1158 | if ( $DEBUG_sys ) ; then |
---|
1159 | echo "IGCM_sys_ncdiff :" $@ |
---|
1160 | fi |
---|
1161 | |
---|
1162 | typeset NB_ESSAI DELAI status i |
---|
1163 | # number of tentative |
---|
1164 | NB_ESSAI=3 |
---|
1165 | # time delay between tentative |
---|
1166 | DELAI=2 |
---|
1167 | |
---|
1168 | i=0 |
---|
1169 | while [ $i -lt $NB_ESSAI ] ; do |
---|
1170 | ncdiff -C --buffer_size 838860800 $@ > ${OUTCOMMAND_PATH}/out_command_${LOGIN}.$$ 2>&1 |
---|
1171 | status=$? |
---|
1172 | if [ ${status} -gt 0 ] ; then |
---|
1173 | IGCM_debug_Print 2 "IGCM_sys_ncdiff : error code ${status}" |
---|
1174 | cat ${OUTCOMMAND_PATH}/out_command_${LOGIN}.$$ |
---|
1175 | \rm ${OUTCOMMAND_PATH}/out_command_${LOGIN}.$$ |
---|
1176 | IGCM_debug_Print 2 "IGCM_sys_ncdiff : ${i}/${NB_ESSAI} sleep ${DELAI} seconds and try again." |
---|
1177 | sleep $DELAI |
---|
1178 | else |
---|
1179 | \rm ${OUTCOMMAND_PATH}/out_command_${LOGIN}.$$ |
---|
1180 | break |
---|
1181 | fi |
---|
1182 | (( i = i + 1 )) |
---|
1183 | done |
---|
1184 | |
---|
1185 | if [ ${status} -gt 0 ] ; then |
---|
1186 | echo "IGCM_sys_ncdiff : ncdiff error" |
---|
1187 | IGCM_debug_Exit "ncdiff" |
---|
1188 | fi |
---|
1189 | |
---|
1190 | IGCM_debug_PopStack "IGCM_sys_ncdiff" |
---|
1191 | } |
---|
1192 | |
---|
1193 | #D-#================================================== |
---|
1194 | #D-function IGCM_sys_ncea |
---|
1195 | #D-* Purpose: encapsulate ncea call so as to manage error code and retry |
---|
1196 | #D-* Examples: |
---|
1197 | #D- |
---|
1198 | function IGCM_sys_ncea { |
---|
1199 | IGCM_debug_PushStack "IGCM_sys_ncea" $@ |
---|
1200 | if ( $DEBUG_sys ) ; then |
---|
1201 | echo "IGCM_sys_ncea :" $@ |
---|
1202 | fi |
---|
1203 | |
---|
1204 | typeset NB_ESSAI DELAI status i |
---|
1205 | # number of tentative |
---|
1206 | NB_ESSAI=3 |
---|
1207 | # time delay between tentative |
---|
1208 | DELAI=2 |
---|
1209 | |
---|
1210 | i=0 |
---|
1211 | while [ $i -lt $NB_ESSAI ] ; do |
---|
1212 | ncea -C --buffer_size 838860800 $@ > ${OUTCOMMAND_PATH}/out_command_${LOGIN}.$$ 2>&1 |
---|
1213 | status=$? |
---|
1214 | if [ ${status} -gt 0 ] ; then |
---|
1215 | IGCM_debug_Print 2 "IGCM_sys_ncea : error code ${status}" |
---|
1216 | cat ${OUTCOMMAND_PATH}/out_command_${LOGIN}.$$ |
---|
1217 | \rm ${OUTCOMMAND_PATH}/out_command_${LOGIN}.$$ |
---|
1218 | IGCM_debug_Print 2 "IGCM_sys_ncea : ${i}/${NB_ESSAI} sleep ${DELAI} seconds and try again." |
---|
1219 | sleep $DELAI |
---|
1220 | else |
---|
1221 | \rm ${OUTCOMMAND_PATH}/out_command_${LOGIN}.$$ |
---|
1222 | break |
---|
1223 | fi |
---|
1224 | (( i = i + 1 )) |
---|
1225 | done |
---|
1226 | |
---|
1227 | if [ ${status} -gt 0 ] ; then |
---|
1228 | echo "IGCM_sys_ncea : ncea error" |
---|
1229 | IGCM_debug_Exit "ncea" |
---|
1230 | fi |
---|
1231 | |
---|
1232 | IGCM_debug_PopStack "IGCM_sys_ncea" |
---|
1233 | } |
---|
1234 | |
---|
1235 | #D-#================================================== |
---|
1236 | #D-function IGCM_sys_ncecat |
---|
1237 | #D-* Purpose: encapsulate ncecat call so as to manage error code and retry |
---|
1238 | #D-* Examples: |
---|
1239 | #D- |
---|
1240 | function IGCM_sys_ncecat { |
---|
1241 | IGCM_debug_PushStack "IGCM_sys_ncecat" $@ |
---|
1242 | if ( $DEBUG_sys ) ; then |
---|
1243 | echo "IGCM_sys_ncecat :" $@ |
---|
1244 | fi |
---|
1245 | |
---|
1246 | typeset NB_ESSAI DELAI status i |
---|
1247 | # number of tentative |
---|
1248 | NB_ESSAI=3 |
---|
1249 | # time delay between tentative |
---|
1250 | DELAI=2 |
---|
1251 | |
---|
1252 | i=0 |
---|
1253 | while [ $i -lt $NB_ESSAI ] ; do |
---|
1254 | ncecat -C --buffer_size 838860800 $@ > ${OUTCOMMAND_PATH}/out_command_${LOGIN}.$$ 2>&1 |
---|
1255 | status=$? |
---|
1256 | if [ ${status} -gt 0 ] ; then |
---|
1257 | IGCM_debug_Print 2 "IGCM_sys_ncecat : error code ${status}" |
---|
1258 | cat ${OUTCOMMAND_PATH}/out_command_${LOGIN}.$$ |
---|
1259 | \rm ${OUTCOMMAND_PATH}/out_command_${LOGIN}.$$ |
---|
1260 | IGCM_debug_Print 2 "IGCM_sys_ncecat : ${i}/${NB_ESSAI} sleep ${DELAI} seconds and try again." |
---|
1261 | sleep $DELAI |
---|
1262 | else |
---|
1263 | \rm ${OUTCOMMAND_PATH}/out_command_${LOGIN}.$$ |
---|
1264 | break |
---|
1265 | fi |
---|
1266 | (( i = i + 1 )) |
---|
1267 | done |
---|
1268 | |
---|
1269 | if [ ${status} -gt 0 ] ; then |
---|
1270 | echo "IGCM_sys_ncecat : ncecat error" |
---|
1271 | IGCM_debug_Exit "ncecat" |
---|
1272 | fi |
---|
1273 | |
---|
1274 | IGCM_debug_PopStack "IGCM_sys_ncecat" |
---|
1275 | } |
---|
1276 | |
---|
1277 | #D-#================================================== |
---|
1278 | #D-function IGCM_sys_ncflint |
---|
1279 | #D-* Purpose: encapsulate ncflint call so as to manage error code and retry |
---|
1280 | #D-* Examples: |
---|
1281 | #D- |
---|
1282 | function IGCM_sys_ncflint { |
---|
1283 | IGCM_debug_PushStack "IGCM_sys_ncflint" $@ |
---|
1284 | if ( $DEBUG_sys ) ; then |
---|
1285 | echo "IGCM_sys_ncflint :" $@ |
---|
1286 | fi |
---|
1287 | |
---|
1288 | typeset NB_ESSAI DELAI status i |
---|
1289 | # number of tentative |
---|
1290 | NB_ESSAI=3 |
---|
1291 | # time delay between tentative |
---|
1292 | DELAI=2 |
---|
1293 | |
---|
1294 | i=0 |
---|
1295 | while [ $i -lt $NB_ESSAI ] ; do |
---|
1296 | ncflint -C --buffer_size 838860800 $@ > ${OUTCOMMAND_PATH}/out_command_${LOGIN}.$$ 2>&1 |
---|
1297 | status=$? |
---|
1298 | if [ ${status} -gt 0 ] ; then |
---|
1299 | IGCM_debug_Print 2 "IGCM_sys_ncflint : error code ${status}" |
---|
1300 | cat ${OUTCOMMAND_PATH}/out_command_${LOGIN}.$$ |
---|
1301 | \rm ${OUTCOMMAND_PATH}/out_command_${LOGIN}.$$ |
---|
1302 | IGCM_debug_Print 2 "IGCM_sys_ncflint : ${i}/${NB_ESSAI} sleep ${DELAI} seconds and try again." |
---|
1303 | sleep $DELAI |
---|
1304 | else |
---|
1305 | \rm ${OUTCOMMAND_PATH}/out_command_${LOGIN}.$$ |
---|
1306 | break |
---|
1307 | fi |
---|
1308 | (( i = i + 1 )) |
---|
1309 | done |
---|
1310 | |
---|
1311 | if [ ${status} -gt 0 ] ; then |
---|
1312 | echo "IGCM_sys_ncflint : ncflint error" |
---|
1313 | IGCM_debug_Exit "ncflint" |
---|
1314 | fi |
---|
1315 | |
---|
1316 | IGCM_debug_PopStack "IGCM_sys_ncflint" |
---|
1317 | } |
---|
1318 | |
---|
1319 | #D-#================================================== |
---|
1320 | #D-function IGCM_sys_ncks |
---|
1321 | #D-* Purpose: encapsulate ncks call so as to manage error code and retry |
---|
1322 | #D-* Examples: |
---|
1323 | #D- |
---|
1324 | function IGCM_sys_ncks { |
---|
1325 | IGCM_debug_PushStack "IGCM_sys_ncks" $@ |
---|
1326 | if ( $DEBUG_sys ) ; then |
---|
1327 | echo "IGCM_sys_ncks :" $@ |
---|
1328 | fi |
---|
1329 | |
---|
1330 | typeset NB_ESSAI DELAI status i |
---|
1331 | # number of tentative |
---|
1332 | NB_ESSAI=3 |
---|
1333 | # time delay between tentative |
---|
1334 | DELAI=2 |
---|
1335 | |
---|
1336 | i=0 |
---|
1337 | while [ $i -lt $NB_ESSAI ] ; do |
---|
1338 | ncks -C --buffer_size 838860800 $@ > ${OUTCOMMAND_PATH}/out_command_${LOGIN}.$$ 2>&1 |
---|
1339 | status=$? |
---|
1340 | if [ ${status} -gt 0 ] ; then |
---|
1341 | IGCM_debug_Print 2 "IGCM_sys_ncks : error code ${status}" |
---|
1342 | cat ${OUTCOMMAND_PATH}/out_command_${LOGIN}.$$ |
---|
1343 | \rm ${OUTCOMMAND_PATH}/out_command_${LOGIN}.$$ |
---|
1344 | IGCM_debug_Print 2 "IGCM_sys_ncks : ${i}/${NB_ESSAI} sleep ${DELAI} seconds and try again." |
---|
1345 | sleep $DELAI |
---|
1346 | else |
---|
1347 | \rm ${OUTCOMMAND_PATH}/out_command_${LOGIN}.$$ |
---|
1348 | break |
---|
1349 | fi |
---|
1350 | (( i = i + 1 )) |
---|
1351 | done |
---|
1352 | |
---|
1353 | if [ ${status} -gt 0 ] ; then |
---|
1354 | echo "IGCM_sys_ncks : ncks error" |
---|
1355 | IGCM_debug_Exit "ncks" |
---|
1356 | fi |
---|
1357 | |
---|
1358 | IGCM_debug_PopStack "IGCM_sys_ncks" |
---|
1359 | } |
---|
1360 | |
---|
1361 | #D-#================================================== |
---|
1362 | #D-function IGCM_sys_ncpdq |
---|
1363 | #D-* Purpose: encapsulate ncpdq call so as to manage error code and retry |
---|
1364 | #D-* Examples: |
---|
1365 | #D- |
---|
1366 | function IGCM_sys_ncpdq { |
---|
1367 | IGCM_debug_PushStack "IGCM_sys_ncpdq" $@ |
---|
1368 | if ( $DEBUG_sys ) ; then |
---|
1369 | echo "IGCM_sys_ncpdq :" $@ |
---|
1370 | fi |
---|
1371 | |
---|
1372 | typeset NB_ESSAI DELAI status i |
---|
1373 | # number of tentative |
---|
1374 | NB_ESSAI=3 |
---|
1375 | # time delay between tentative |
---|
1376 | DELAI=2 |
---|
1377 | |
---|
1378 | i=0 |
---|
1379 | while [ $i -lt $NB_ESSAI ] ; do |
---|
1380 | ncpdq -C --buffer_size 838860800 $@ > ${OUTCOMMAND_PATH}/out_command_${LOGIN}.$$ 2>&1 |
---|
1381 | status=$? |
---|
1382 | if [ ${status} -gt 0 ] ; then |
---|
1383 | IGCM_debug_Print 2 "IGCM_sys_ncpdq : error code ${status}" |
---|
1384 | cat ${OUTCOMMAND_PATH}/out_command_${LOGIN}.$$ |
---|
1385 | \rm ${OUTCOMMAND_PATH}/out_command_${LOGIN}.$$ |
---|
1386 | IGCM_debug_Print 2 "IGCM_sys_ncpdq : ${i}/${NB_ESSAI} sleep ${DELAI} seconds and try again." |
---|
1387 | sleep $DELAI |
---|
1388 | else |
---|
1389 | \rm ${OUTCOMMAND_PATH}/out_command_${LOGIN}.$$ |
---|
1390 | break |
---|
1391 | fi |
---|
1392 | (( i = i + 1 )) |
---|
1393 | done |
---|
1394 | |
---|
1395 | if [ ${status} -gt 0 ] ; then |
---|
1396 | echo "IGCM_sys_ncpdq : ncpdq error" |
---|
1397 | IGCM_debug_Exit "ncpdq" |
---|
1398 | fi |
---|
1399 | |
---|
1400 | IGCM_debug_PopStack "IGCM_sys_ncpdq" |
---|
1401 | } |
---|
1402 | |
---|
1403 | #D-#================================================== |
---|
1404 | #D-function IGCM_sys_ncra |
---|
1405 | #D-* Purpose: encapsulate ncra call so as to manage error code and retry |
---|
1406 | #D-* Examples: |
---|
1407 | #D- |
---|
1408 | function IGCM_sys_ncra { |
---|
1409 | IGCM_debug_PushStack "IGCM_sys_ncra" $@ |
---|
1410 | if ( $DEBUG_sys ) ; then |
---|
1411 | echo "IGCM_sys_ncra :" $@ |
---|
1412 | fi |
---|
1413 | |
---|
1414 | typeset NB_ESSAI DELAI status i |
---|
1415 | # number of tentative |
---|
1416 | NB_ESSAI=3 |
---|
1417 | # time delay between tentative |
---|
1418 | DELAI=2 |
---|
1419 | |
---|
1420 | i=0 |
---|
1421 | while [ $i -lt $NB_ESSAI ] ; do |
---|
1422 | ncra -C --buffer_size 838860800 $@ > ${OUTCOMMAND_PATH}/out_command_${LOGIN}.$$ 2>&1 |
---|
1423 | status=$? |
---|
1424 | if [ ${status} -gt 0 ] ; then |
---|
1425 | IGCM_debug_Print 2 "IGCM_sys_ncra : error code ${status}" |
---|
1426 | cat ${OUTCOMMAND_PATH}/out_command_${LOGIN}.$$ |
---|
1427 | \rm ${OUTCOMMAND_PATH}/out_command_${LOGIN}.$$ |
---|
1428 | IGCM_debug_Print 2 "IGCM_sys_ncra : ${i}/${NB_ESSAI} sleep ${DELAI} seconds and try again." |
---|
1429 | sleep $DELAI |
---|
1430 | else |
---|
1431 | \rm ${OUTCOMMAND_PATH}/out_command_${LOGIN}.$$ |
---|
1432 | break |
---|
1433 | fi |
---|
1434 | (( i = i + 1 )) |
---|
1435 | done |
---|
1436 | |
---|
1437 | if [ ${status} -gt 0 ] ; then |
---|
1438 | echo "IGCM_sys_ncra : ncra error" |
---|
1439 | IGCM_debug_Exit "ncra" |
---|
1440 | fi |
---|
1441 | |
---|
1442 | IGCM_debug_PopStack "IGCM_sys_ncra" |
---|
1443 | } |
---|
1444 | |
---|
1445 | #D-#================================================== |
---|
1446 | #D-function IGCM_sys_ncrcat |
---|
1447 | #D-* Purpose: encapsulate ncrcat call so as to manage error code and retry |
---|
1448 | #D-* Examples: |
---|
1449 | #D- |
---|
1450 | function IGCM_sys_ncrcat { |
---|
1451 | IGCM_debug_PushStack "IGCM_sys_ncrcat" $@ |
---|
1452 | if ( $DEBUG_sys ) ; then |
---|
1453 | echo "IGCM_sys_ncrcat :" $@ |
---|
1454 | fi |
---|
1455 | |
---|
1456 | typeset NB_ESSAI DELAI status i lastArg |
---|
1457 | # number of tentative |
---|
1458 | NB_ESSAI=3 |
---|
1459 | # time delay between tentative |
---|
1460 | DELAI=2 |
---|
1461 | |
---|
1462 | i=0 |
---|
1463 | while [ $i -lt $NB_ESSAI ] ; do |
---|
1464 | ncrcat -C --buffer_size 838860800 $@ > ${OUTCOMMAND_PATH}/out_command_${LOGIN}.$$ 2>&1 |
---|
1465 | status=$? |
---|
1466 | if [ ${status} -gt 0 ] ; then |
---|
1467 | IGCM_debug_Print 2 "IGCM_sys_ncrcat : error code ${status}" |
---|
1468 | cat ${OUTCOMMAND_PATH}/out_command_${LOGIN}.$$ |
---|
1469 | \rm ${OUTCOMMAND_PATH}/out_command_${LOGIN}.$$ |
---|
1470 | IGCM_debug_Print 2 "IGCM_sys_ncrcat : ${i}/${NB_ESSAI} sleep ${DELAI} seconds and try again." |
---|
1471 | sleep $DELAI |
---|
1472 | elif ( [ ! "X$( grep "WARNING Intra-file non-monotonicity" ${OUTCOMMAND_PATH}/out_command_${LOGIN}.$$ )" = "X" ] && [ X${config_Post_IgnoreNonMonotonic} = XFALSE ] ) ; then |
---|
1473 | IGCM_debug_Print 2 "IGCM_sys_ncrcat : WARNING Intra-file non-monotonicity" |
---|
1474 | cat ${OUTCOMMAND_PATH}/out_command_${LOGIN}.$$ |
---|
1475 | # remove files having corrupted time axis |
---|
1476 | eval lastArg=\${$#} |
---|
1477 | IGCM_debug_Print 2 "Remove files having corrupted time axis" |
---|
1478 | IGCM_debug_Print 2 "IGCM_sys_ncrcat : Delete ${lastArg}" |
---|
1479 | \rm ${lastArg} |
---|
1480 | \rm ${OUTCOMMAND_PATH}/out_command_${LOGIN}.$$ |
---|
1481 | IGCM_debug_Print 2 "IGCM_sys_ncrcat : ${i}/${NB_ESSAI} sleep ${DELAI} seconds and try again." |
---|
1482 | sleep $DELAI |
---|
1483 | else |
---|
1484 | \rm ${OUTCOMMAND_PATH}/out_command_${LOGIN}.$$ |
---|
1485 | break |
---|
1486 | fi |
---|
1487 | (( i = i + 1 )) |
---|
1488 | done |
---|
1489 | |
---|
1490 | # Special case for spinup with cyclic time axis: change attribute calendar to none |
---|
1491 | if [ X${config_Post_IgnoreNonMonotonic} = XTRUE ] ; then |
---|
1492 | eval lastArg=\${$#} |
---|
1493 | echo "IGCM_sys_ncrcat : change attribute calendar to none in file:" ${lastArg} |
---|
1494 | IGCM_sys_ncatted -a calendar,time_counter,m,c,none ${lastArg} |
---|
1495 | fi |
---|
1496 | |
---|
1497 | if [ ${status} -gt 0 ] ; then |
---|
1498 | echo "IGCM_sys_ncrcat : ncrcat error" |
---|
1499 | #IGCM_debug_Exit "ncrcat" |
---|
1500 | fi |
---|
1501 | |
---|
1502 | IGCM_debug_PopStack "IGCM_sys_ncrcat" |
---|
1503 | } |
---|
1504 | |
---|
1505 | #D-#================================================== |
---|
1506 | #D-function IGCM_sys_ncrename |
---|
1507 | #D-* Purpose: encapsulate ncrename call so as to manage error code and retry |
---|
1508 | #D-* Examples: |
---|
1509 | #D- |
---|
1510 | function IGCM_sys_ncrename { |
---|
1511 | IGCM_debug_PushStack "IGCM_sys_ncrename" $@ |
---|
1512 | if ( $DEBUG_sys ) ; then |
---|
1513 | echo "IGCM_sys_ncrename :" $@ |
---|
1514 | fi |
---|
1515 | |
---|
1516 | typeset NB_ESSAI DELAI status i |
---|
1517 | # number of tentative |
---|
1518 | NB_ESSAI=3 |
---|
1519 | # time delay between tentative |
---|
1520 | DELAI=2 |
---|
1521 | |
---|
1522 | i=0 |
---|
1523 | while [ $i -lt $NB_ESSAI ] ; do |
---|
1524 | ncrename $@ > ${OUTCOMMAND_PATH}/out_command_${LOGIN}.$$ 2>&1 |
---|
1525 | status=$? |
---|
1526 | if [ ${status} -gt 0 ] ; then |
---|
1527 | IGCM_debug_Print 2 "IGCM_sys_ncrename : error code ${status}" |
---|
1528 | cat ${OUTCOMMAND_PATH}/out_command_${LOGIN}.$$ |
---|
1529 | \rm ${OUTCOMMAND_PATH}/out_command_${LOGIN}.$$ |
---|
1530 | IGCM_debug_Print 2 "IGCM_sys_ncrename : ${i}/${NB_ESSAI} sleep ${DELAI} seconds and try again." |
---|
1531 | sleep $DELAI |
---|
1532 | else |
---|
1533 | \rm ${OUTCOMMAND_PATH}/out_command_${LOGIN}.$$ |
---|
1534 | break |
---|
1535 | fi |
---|
1536 | (( i = i + 1 )) |
---|
1537 | done |
---|
1538 | |
---|
1539 | if [ ${status} -gt 0 ] ; then |
---|
1540 | echo "IGCM_sys_ncrename : ncrename error" |
---|
1541 | IGCM_debug_Exit "ncrename" |
---|
1542 | fi |
---|
1543 | |
---|
1544 | IGCM_debug_PopStack "IGCM_sys_ncrename" |
---|
1545 | } |
---|
1546 | |
---|
1547 | #D-#================================================== |
---|
1548 | #D-function IGCM_sys_ncwa |
---|
1549 | #D-* Purpose: encapsulate ncwa call so as to manage error code and retry |
---|
1550 | #D-* Examples: |
---|
1551 | #D- |
---|
1552 | function IGCM_sys_ncwa { |
---|
1553 | IGCM_debug_PushStack "IGCM_sys_ncwa" $@ |
---|
1554 | if ( $DEBUG_sys ) ; then |
---|
1555 | echo "IGCM_sys_ncwa :" $@ |
---|
1556 | fi |
---|
1557 | |
---|
1558 | typeset NB_ESSAI DELAI status i |
---|
1559 | # number of tentative |
---|
1560 | NB_ESSAI=3 |
---|
1561 | # time delay between tentative |
---|
1562 | DELAI=2 |
---|
1563 | |
---|
1564 | i=0 |
---|
1565 | while [ $i -lt $NB_ESSAI ] ; do |
---|
1566 | ncwa -C --buffer_size 838860800 $@ > ${OUTCOMMAND_PATH}/out_command_${LOGIN}.$$ 2>&1 |
---|
1567 | status=$? |
---|
1568 | if [ ${status} -gt 0 ] ; then |
---|
1569 | IGCM_debug_Print 2 "IGCM_sys_ncwa : error code ${status}" |
---|
1570 | cat ${OUTCOMMAND_PATH}/out_command_${LOGIN}.$$ |
---|
1571 | \rm ${OUTCOMMAND_PATH}/out_command_${LOGIN}.$$ |
---|
1572 | IGCM_debug_Print 2 "IGCM_sys_ncwa : ${i}/${NB_ESSAI} sleep ${DELAI} seconds and try again." |
---|
1573 | sleep $DELAI |
---|
1574 | else |
---|
1575 | \rm ${OUTCOMMAND_PATH}/out_command_${LOGIN}.$$ |
---|
1576 | break |
---|
1577 | fi |
---|
1578 | (( i = i + 1 )) |
---|
1579 | done |
---|
1580 | |
---|
1581 | if [ ${status} -gt 0 ] ; then |
---|
1582 | echo "IGCM_sys_ncwa : ncwa error" |
---|
1583 | IGCM_debug_Exit "ncwa" |
---|
1584 | fi |
---|
1585 | |
---|
1586 | IGCM_debug_PopStack "IGCM_sys_ncwa" |
---|
1587 | } |
---|
1588 | |
---|
1589 | ############################################################## |
---|
1590 | # CDO OPERATOR |
---|
1591 | |
---|
1592 | #D-#================================================== |
---|
1593 | #D-function IGCM_sys_cdo |
---|
1594 | #D-* Purpose: encapsulate cdo call so as to manage error code and retry |
---|
1595 | #D-* Examples: |
---|
1596 | #D- |
---|
1597 | function IGCM_sys_cdo { |
---|
1598 | IGCM_debug_PushStack "IGCM_sys_cdo" $@ |
---|
1599 | if ( $DEBUG_sys ) ; then |
---|
1600 | echo "IGCM_sys_cdo :" $@ |
---|
1601 | fi |
---|
1602 | |
---|
1603 | typeset status |
---|
1604 | |
---|
1605 | \cdo $@ > ${OUTCOMMAND_PATH}/out_command_${LOGIN}.$$ 2>&1 |
---|
1606 | status=$? |
---|
1607 | if [ ${status} -gt 0 ] ; then |
---|
1608 | echo "IGCM_sys_cdo : error code ${status}" |
---|
1609 | cat ${OUTCOMMAND_PATH}/out_command_${LOGIN}.$$ |
---|
1610 | \rm ${OUTCOMMAND_PATH}/out_command_${LOGIN}.$$ |
---|
1611 | IGCM_debug_PopStack "IGCM_sys_cdo" |
---|
1612 | return 1 |
---|
1613 | else |
---|
1614 | IGCM_debug_PopStack "IGCM_sys_cdo" |
---|
1615 | return 0 |
---|
1616 | fi |
---|
1617 | |
---|
1618 | IGCM_debug_PopStack "IGCM_sys_cdo" |
---|
1619 | } |
---|
1620 | |
---|
1621 | # |
---|