1 | #!/bin/ksh |
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2 | |
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3 | #************************************************************** |
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4 | # Author: Martial Mancip |
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5 | # Contact: Martial.Mancip__at__ipsl.jussieu.fr |
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6 | # $Revision:: $ Revision of last commit |
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7 | # $Author:: $ Author of last commit |
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8 | # $Date:: $ Date of last commit |
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9 | # IPSL (2006) |
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10 | # This software is governed by the CeCILL licence see libIGCM/libIGCM_CeCILL.LIC |
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11 | # |
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12 | #************************************************************** |
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13 | # bypass specific internationalization (for gawk) |
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14 | export LC_ALL="C" |
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15 | |
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16 | # By default, all libIGCM_sys save functions will protect output datas (RUN execution mode) |
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17 | # other values : DEB(ug), DEV(elopment). |
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18 | JobType=${JobType:=RUN} |
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19 | |
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20 | #==================================================== |
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21 | # set PackDefault false by default |
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22 | PackDefault=false |
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23 | |
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24 | #==================================================== |
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25 | # set BigBrother false by default |
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26 | BigBrother=${BigBrother:=false} |
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27 | |
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28 | #==================================================== |
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29 | # set BigBrother channel (AMQP or MAIL) |
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30 | # only MAIL working at present due to firewall constraint |
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31 | BigBrotherChannel=MAIL |
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32 | |
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33 | # no need to be so verbose in checking mode |
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34 | if [ ! X${TaskType} = Xchecking ] ; then |
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35 | echo |
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36 | echo "====================================================" |
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37 | echo "Where do we run ?" $( hostname ) |
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38 | uname -a |
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39 | echo "====================================================" |
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40 | echo |
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41 | fi |
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42 | |
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43 | if [ X${JobType} = XDEB ] ; then |
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44 | echo "DEBUG mode : activation of 'set -vx' mode." |
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45 | set -vx |
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46 | DEBUG_debug=true |
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47 | DEBUG_sys=true |
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48 | fi |
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49 | |
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50 | #==================================================== |
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51 | |
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52 | case $( hostname -s ) in |
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53 | ada*) |
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54 | [ ! X${TaskType} = Xchecking ] && echo "Source machine dependent settings for ada Intel X-64." |
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55 | CENTER=IDRIS |
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56 | SYSTEM=ada |
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57 | . ${libIGCM}/libIGCM_sys/libIGCM_sys_ada.ksh;; |
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58 | curie*) |
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59 | [ ! X${TaskType} = Xchecking ] && echo "Source machine dependent settings for curie Intel X-64." |
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60 | CENTER=TGCC |
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61 | SYSTEM=curie |
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62 | . ${libIGCM}/libIGCM_sys/libIGCM_sys_curie.ksh;; |
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63 | irene*) |
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64 | if [ "${SLURM_JOB_PARTITION}" = "rome" ] || [ "$( hostname -s)" = "irene172" ] || [ "$( hostname -s)" = "irene173" ] || [ "$( hostname -s)" = "irene194" ] || [ "$( hostname -s)" = "irene195" ] ; then |
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65 | [ ! X${TaskType} = Xchecking ] && echo "Source machine dependent settings for irene_amd Intel X-64 at TGCC" |
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66 | CENTER=TGCC |
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67 | SYSTEM=irene-amd |
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68 | . ${libIGCM}/libIGCM_sys/libIGCM_sys_irene-amd.ksh |
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69 | else |
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70 | [ ! X${TaskType} = Xchecking ] && echo "Source machine dependent settings for irene Intel X-64 at TGCC" |
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71 | CENTER=TGCC |
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72 | SYSTEM=irene |
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73 | . ${libIGCM}/libIGCM_sys/libIGCM_sys_irene.ksh |
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74 | fi;; |
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75 | airain*) |
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76 | [ ! X${TaskType} = Xchecking ] && echo "Source machine dependent settings for airain Intel X-64." |
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77 | CENTER=TGCC |
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78 | SYSTEM=curie |
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79 | . ${libIGCM}/libIGCM_sys/libIGCM_sys_curie.ksh;; |
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80 | asterix*|obelix*) |
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81 | [ ! X${TaskType} = Xchecking ] && echo "Source machine dependent settings for obelix or asterix." |
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82 | CENTER=LSCE |
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83 | SYSTEM=obelix |
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84 | . ${libIGCM}/libIGCM_sys/libIGCM_sys_obelix.ksh;; |
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85 | spiritx*) |
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86 | [ ! X${TaskType} = Xchecking ] && echo "Source machine dependent settings for spiritx at MESO ESPRI IPSL cluster." |
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87 | CENTER=spiritx |
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88 | SYSTEM=mesoipsl |
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89 | . ${libIGCM}/libIGCM_sys/libIGCM_sys_mesoipsl.ksh;; |
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90 | spirit*) |
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91 | [ ! X${TaskType} = Xchecking ] && echo "Source machine dependent settings for spirit at MESO ESPRI IPSL cluster." |
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92 | CENTER=spirit |
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93 | SYSTEM=mesoipsl |
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94 | . ${libIGCM}/libIGCM_sys/libIGCM_sys_mesoipsl.ksh;; |
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95 | ciclad*) |
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96 | [ ! X${TaskType} = Xchecking ] && echo "Source machine dependent settings for ciclad for running at ciclad." |
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97 | CENTER=IPSL-ciclad |
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98 | SYSTEM=ifort_CICLAD |
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99 | . ${libIGCM}/libIGCM_sys/libIGCM_sys_ciclad.ksh;; |
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100 | camelot*|loholt1*|loholt2*|merlin*) |
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101 | [ ! X${TaskType} = Xchecking ] && echo "Source machine dependent settings for ciclad for running at climserv." |
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102 | CENTER=IPSL-climserv |
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103 | SYSTEM=ifort_CICLAD |
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104 | . ${libIGCM}/libIGCM_sys/libIGCM_sys_ciclad.ksh;; |
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105 | iitm*) |
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106 | [ ! X${TaskType} = Xchecking ] && echo "Source machine dependent settings for iitm." |
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107 | CENTER=IITM |
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108 | SYSTEM=iitm |
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109 | . ${libIGCM}/libIGCM_sys/libIGCM_sys_iitm.ksh;; |
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110 | *) |
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111 | if [ "${SLURM_CLUSTER_NAME}" = "jean-zay" ] || [ "$( hostname -s | cut -c "1-8" )" = "jean-zay" ] ; then |
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112 | [ ! X${TaskType} = Xchecking ] && echo "Source machine dependent settings for Jean-Zay Intel X-64." |
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113 | CENTER=IDRIS |
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114 | SYSTEM=jeanzay |
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115 | . ${libIGCM}/libIGCM_sys/libIGCM_sys_jeanzay.ksh |
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116 | else |
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117 | [ ! X${TaskType} = Xchecking ] && echo "Source machine dependent settings for a default machine." |
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118 | CENTER=DEFAULT |
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119 | SYSTEM=default |
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120 | . ${libIGCM}/libIGCM_sys/libIGCM_sys_default.ksh |
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121 | fi;; |
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122 | esac |
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123 | # Set default umask (umask is 0027 on some machines : CCRT machine at least) |
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124 | umask 0022 |
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125 | |
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126 | #D--------------------------------------------------------------------== |
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127 | #D- |
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128 | #D- Define IGCM_sys functions that are common on every systems |
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129 | #D- |
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130 | #D--------------------------------------------------------------------== |
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131 | |
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132 | #D-#================================================== |
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133 | #D-function IGCM_sys_RshMaster |
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134 | #D-* Purpose: Connection to frontend machine. |
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135 | #D-* Examples: |
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136 | #D- |
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137 | function IGCM_sys_RshMaster { |
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138 | IGCM_debug_PushStack "IGCM_sys_RshMaster" $@ |
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139 | OUTCOMMAND_PATH=${OUTCOMMAND_PATH} /bin/ksh <<-EOF |
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140 | export libIGCM=${libIGCM} |
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141 | export DEBUG_debug=${DEBUG_debug} |
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142 | . ${libIGCM}/libIGCM_debug/libIGCM_debug.ksh |
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143 | . ${libIGCM}/libIGCM_card/libIGCM_card.ksh |
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144 | ${@} |
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145 | EOF |
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146 | if [ $? -gt 0 ] ; then |
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147 | echo "IGCM_sys_RshMaster : erreur." |
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148 | IGCM_debug_Exit "IGCM_sys_RshMaster" |
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149 | fi |
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150 | IGCM_debug_PopStack "IGCM_sys_RshMaster" |
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151 | } |
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152 | |
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153 | #D-#================================================== |
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154 | #D-function IGCM_sys_RshPost |
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155 | #D-* Purpose: Post-process rsh command |
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156 | #D-* Examples: |
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157 | #D- |
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158 | function IGCM_sys_RshPost { |
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159 | IGCM_debug_PushStack "IGCM_sys_RshPost" $@ |
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160 | if ( $DEBUG_sys ) ; then |
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161 | echo "IGCM_sys_RshPost :" $@ |
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162 | fi |
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163 | # keep standard input (stdin) for the loop onto temporary file |
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164 | cat >${OUTCOMMAND_PATH}/tmp_IGCM_sys_RshPost_$$_${LOGNAME} |
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165 | |
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166 | OUTCOMMAND_PATH=${OUTCOMMAND_PATH} /bin/ksh <${OUTCOMMAND_PATH}/tmp_IGCM_sys_RshPost_$$_${LOGNAME} |
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167 | if [ $? -gt 0 ] ; then |
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168 | echo "IGCM_sys_RshPost : erreur." |
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169 | IGCM_debug_Exit "IGCM_sys_RshPost" |
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170 | fi |
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171 | # delete temporary file |
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172 | \rm ${OUTCOMMAND_PATH}/tmp_IGCM_sys_RshPost_$$_${LOGNAME} |
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173 | |
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174 | # ============ FRONTEND END ============ # |
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175 | |
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176 | # ============ CESIUM START ============ # |
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177 | # typeset NB_ESSAI DELAI status i |
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178 | # if [ "X$( grep rebuild_from tmp_IGCM_sys_RshPost_$$ )" != "X" ] ; then |
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179 | # #little hack so that rebuild submission is done on titane not an cesium |
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180 | # |
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181 | # libIGCM_POST_sed=$( echo $libIGCM_POST | sed 's/\//\\\//g' ) |
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182 | # POST_DIR_sed=$( echo ${POST_DIR} | sed 's/\//\\\//g' ) |
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183 | # sed "s/IGCM_sys_QsubPost/IGCM_sys_Qsub/g" tmp_IGCM_sys_RshPost_$$ > tmp.txt |
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184 | # sed "s/ rebuild_fromWorkdir/ ${libIGCM_POST_sed}\/rebuild_fromWorkdir.job/g" tmp.txt > tmp_IGCM_sys_RshPost_$$ |
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185 | # sed "s/ rebuild_fromArchive/ ${libIGCM_POST_sed}\/rebuild_fromArchive.job/g" tmp_IGCM_sys_RshPost_$$ > tmp.txt |
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186 | # sed "s/Script_Post_Output=/Script_Output=${POST_DIR_sed}\//g" tmp.txt > tmp_IGCM_sys_RshPost_$$ |
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187 | # \mv tmp.txt tmp_IGCM_sys_RshPost_$$ |
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188 | # |
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189 | # echo cat tmp_IGCM_sys_RshPost_$$ AFTER |
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190 | # cat tmp_IGCM_sys_RshPost_$$ |
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191 | # |
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192 | # /bin/ksh <tmp_IGCM_sys_RshPost_$$ |
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193 | # if [ $? -gt 0 ] ; then |
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194 | # echo "IGCM_sys_RshPost : erreur." |
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195 | # IGCM_debug_Exit "IGCM_sys_RshPost" |
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196 | # fi |
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197 | # # delete temporary file |
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198 | # \rm tmp_IGCM_sys_RshPost_$$ |
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199 | # |
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200 | # else |
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201 | # # number of tentative |
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202 | # NB_ESSAI=10 |
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203 | # # time delay between tentative |
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204 | # DELAI=10 |
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205 | # i=0 |
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206 | # while [ $i -ne $NB_ESSAI ] ; do |
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207 | # ssh -t titane996 ssh cesium /bin/ksh <tmp_IGCM_sys_RshPost_$$ |
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208 | # status=$? |
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209 | # if [ ${status} -ne 0 ]; |
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210 | # then |
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211 | # sleep $DELAI |
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212 | # else |
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213 | # break |
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214 | # fi |
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215 | # let i=$i+1 |
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216 | # done |
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217 | # # delete temporary file |
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218 | # \rm tmp_IGCM_sys_RshPost_$$ |
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219 | # |
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220 | # if [ ${status} -gt 0 ] ; then |
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221 | # echo "IGCM_sys_RshPost : erreur." |
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222 | # IGCM_debug_Exit "IGCM_sys_RshPost" |
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223 | # fi |
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224 | # fi |
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225 | |
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226 | # ============ CESIUM END ============ # |
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227 | |
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228 | IGCM_debug_PopStack "IGCM_sys_RshPost" |
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229 | } |
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230 | |
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231 | #D-#================================================== |
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232 | #D-function IGCM_sys_SendMail |
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233 | #D-* Purpose: Send mail when simulation is over |
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234 | #D-* Examples: |
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235 | #D- |
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236 | function IGCM_sys_SendMail { |
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237 | IGCM_debug_PushStack "IGCM_sys_SendMail" $@ |
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238 | if ( $DEBUG_sys ) ; then |
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239 | echo "IGCM_sys_SendMail :" $@ |
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240 | fi |
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241 | |
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242 | if [ X${1} = XAccounting ] ; then |
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243 | status=Accounting |
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244 | mailText=jobAccounting.mail |
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245 | elif ( ${ExitFlag} ) ; then |
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246 | status=failed |
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247 | mailText=jobEnd.mail |
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248 | else |
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249 | status=completed |
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250 | mailText=jobEnd.mail |
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251 | fi |
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252 | |
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253 | # Update selected mail template |
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254 | while read -r line; do |
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255 | eval echo $line >> mail.txt ; |
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256 | done < ${libIGCM}/libIGCM_sys/${mailText} |
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257 | |
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258 | if [ ! -z ${config_UserChoices_MailName} ] ; then |
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259 | mail -s "${config_UserChoices_JobName} ${status}" ${config_UserChoices_MailName} < mail.txt |
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260 | elif [ -f ~/.forward ] ; then |
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261 | mail -s "${config_UserChoices_JobName} ${status}" $( cat ~/.forward ) < mail.txt |
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262 | else |
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263 | mail -s "${config_UserChoices_JobName} ${status}" ${USER} < mail.txt |
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264 | fi |
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265 | |
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266 | sleep 10 |
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267 | rm -f mail.txt |
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268 | |
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269 | IGCM_debug_PopStack "IGCM_sys_SendMail" |
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270 | } |
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271 | |
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272 | #D-#================================================== |
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273 | #D-function IGCM_sys_Mkdir |
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274 | #D-* Purpose: Master locale mkdir command |
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275 | #D-* Examples: |
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276 | #D- |
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277 | function IGCM_sys_Mkdir { |
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278 | IGCM_debug_PushStack "IGCM_sys_Mkdir" $@ |
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279 | if ( $DEBUG_sys ) ; then |
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280 | echo "IGCM_sys_Mkdir :" $@ |
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281 | fi |
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282 | if [ ! -d ${1} ]; then |
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283 | \mkdir -p $1 |
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284 | if [ $? -gt 0 ] ; then |
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285 | echo "IGCM_sys_Mkdir : erreur." |
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286 | IGCM_debug_Exit "IGCM_sys_Mkdir" |
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287 | fi |
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288 | fi |
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289 | # vérification : |
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290 | if [ ! -d ${1} ] ; then |
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291 | echo "IGCM_sys_Mkdir : erreur." |
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292 | IGCM_debug_Exit "IGCM_sys_Mkdir" |
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293 | fi |
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294 | IGCM_debug_PopStack "IGCM_sys_Mkdir" |
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295 | } |
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296 | |
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297 | #D-#================================================== |
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298 | #D-function IGCM_sys_MkdirWork |
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299 | #D-* Purpose: Mkdir on Work |
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300 | #D-* Examples: |
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301 | #D- |
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302 | function IGCM_sys_MkdirWork { |
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303 | IGCM_debug_PushStack "IGCM_sys_MkdirWork" $@ |
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304 | if ( $DEBUG_sys ) ; then |
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305 | echo "IGCM_sys_MkdirWork :" $@ |
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306 | fi |
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307 | #- creation de repertoire sur le serveur fichier |
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308 | if [ ! -d ${1} ]; then |
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309 | \mkdir -p $1 |
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310 | if [ $? -gt 0 ] ; then |
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311 | echo "IGCM_sys_MkdirWork : erreur." |
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312 | IGCM_debug_Exit "IGCM_sys_MkdirWork" |
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313 | fi |
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314 | fi |
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315 | IGCM_debug_PopStack "IGCM_sys_MkdirWork" |
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316 | } |
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317 | |
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318 | #D-#================================================== |
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319 | #D-function IGCM_sys_Cd |
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320 | #D-* Purpose: master cd command |
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321 | #D-* Examples: |
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322 | #D- |
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323 | function IGCM_sys_Cd { |
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324 | IGCM_debug_PushStack "IGCM_sys_Cd" $@ |
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325 | if ( $DEBUG_sys ) ; then |
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326 | echo "IGCM_sys_Cd :" $@ |
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327 | fi |
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328 | \cd $1 |
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329 | if [ $? -gt 0 ] ; then |
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330 | echo "IGCM_sys_Cd : erreur." |
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331 | IGCM_debug_Exit "IGCM_sys_Cd" |
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332 | fi |
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333 | IGCM_debug_PopStack "IGCM_sys_Cd" |
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334 | } |
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335 | |
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336 | #D-#================================================== |
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337 | #D-function IGCM_sys_Chmod |
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338 | #D-* Purpose: Chmod |
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339 | #D-* Examples: |
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340 | #D- |
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341 | function IGCM_sys_Chmod { |
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342 | IGCM_debug_PushStack "IGCM_sys_Chmod" $@ |
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343 | if ( $DEBUG_sys ) ; then |
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344 | echo "IGCM_sys_Chmod :" $@ |
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345 | fi |
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346 | \chmod $@ |
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347 | if [ $? -gt 0 ] ; then |
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348 | echo "IGCM_sys_Chmod : erreur." |
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349 | IGCM_debug_Exit "IGCM_sys_Chmod" |
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350 | fi |
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351 | IGCM_debug_PopStack "IGCM_sys_Chmod" |
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352 | } |
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353 | |
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354 | #D-#================================================== |
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355 | #D-function IGCM_sys_FileSize |
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356 | #D-* Purpose: Filesize |
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357 | #D-* Examples: |
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358 | #D- |
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359 | function IGCM_sys_FileSize { |
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360 | IGCM_debug_PushStack "IGCM_sys_FileSize" $@ |
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361 | |
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362 | typeset sizeF |
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363 | set +A sizeF -- $( ls -la ${1} ) |
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364 | if [ $? -gt 0 ] ; then |
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365 | IGCM_debug_Exit "IGCM_sys_FileSize" |
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366 | fi |
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367 | eval ${2}=${sizeF[4]} |
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368 | |
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369 | IGCM_debug_PopStack "IGCM_sys_FileSize" |
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370 | } |
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371 | |
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372 | #D-#================================================== |
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373 | #D-function IGCM_sys_TestDir |
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374 | #D-* Purpose: Test Directory that must exists |
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375 | #D-* Examples: |
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376 | #D- |
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377 | function IGCM_sys_TestDir { |
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378 | IGCM_debug_PushStack "IGCM_sys_TestDir" $@ |
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379 | if ( $DEBUG_sys ) ; then |
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380 | echo "IGCM_sys_TestDir :" $@ |
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381 | fi |
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382 | typeset ExistFlag |
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383 | ExistFlag=$( [ -d $1 ] && echo 0 || echo 1 ) |
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384 | IGCM_debug_PopStack "IGCM_sys_TestDir" |
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385 | |
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386 | return ${ExistFlag} |
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387 | } |
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388 | |
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389 | #D-#================================================== |
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390 | #D-function IGCM_sys_TestFileBuffer |
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391 | #D-* Purpose: Test file that must NOT EXISTS on Buffer |
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392 | #D-* Examples: |
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393 | #D- |
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394 | function IGCM_sys_TestFileBuffer { |
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395 | IGCM_debug_PushStack "IGCM_sys_TestFileBuffer" $@ |
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396 | typeset ExistFlag |
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397 | ExistFlag=$( [ -f $1 ] && echo 0 || echo 1 ) |
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398 | IGCM_debug_PopStack "IGCM_sys_TestFileBuffer" |
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399 | |
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400 | return ${ExistFlag} |
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401 | } |
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402 | |
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403 | #D-#================================================== |
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404 | #D-function IGCM_sys_CountFileBuffer |
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405 | #D-* Purpose: Count files on Scratch filesystem |
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406 | #D-* Examples: |
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407 | #D- |
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408 | function IGCM_sys_CountFileBuffer { |
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409 | IGCM_debug_PushStack "IGCM_sys_CountFileBuffer" $@ |
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410 | ls ${@} 2>/dev/null | wc -l |
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411 | if [ $? -gt 0 ] ; then |
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412 | echo "IGCM_sys_CountFileBuffer : erreur." |
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413 | fi |
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414 | IGCM_debug_PopStack "IGCM_sys_CountFileBuffer" |
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415 | } |
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416 | |
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417 | #D-#================================================== |
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418 | #D-function IGCM_sys_Tar |
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419 | #D-* Purpose: master tar command |
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420 | #D-* Examples: |
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421 | #D- |
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422 | function IGCM_sys_Tar { |
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423 | IGCM_debug_PushStack "IGCM_sys_Tar" $@ |
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424 | if ( $DEBUG_sys ) ; then |
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425 | echo "IGCM_sys_Tar :" $@ |
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426 | fi |
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427 | \tar cf $@ |
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428 | if [ $? -gt 0 ] ; then |
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429 | echo "IGCM_sys_Tar : erreur." |
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430 | IGCM_debug_Exit "IGCM_sys_Tar" |
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431 | fi |
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432 | IGCM_debug_PopStack "IGCM_sys_Tar" |
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433 | } |
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434 | |
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435 | #D-#================================================== |
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436 | #D-function IGCM_sys_UnTar |
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437 | #D-* Purpose: master un-tar command |
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438 | #D-* Examples: |
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439 | #D- |
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440 | function IGCM_sys_UnTar { |
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441 | IGCM_debug_PushStack "IGCM_sys_UnTar" $@ |
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442 | if ( $DEBUG_sys ) ; then |
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443 | echo "IGCM_sys_UnTar :" $@ |
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444 | fi |
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445 | \tar xvf $1 |
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446 | if [ $? -gt 0 ] ; then |
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447 | echo "IGCM_sys_UnTar : erreur." |
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448 | IGCM_debug_Exit "IGCM_sys_UnTar" |
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449 | fi |
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450 | IGCM_debug_PopStack "IGCM_sys_UnTar" |
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451 | } |
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452 | |
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453 | #D-************************* |
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454 | #D- File transfer functions |
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455 | #D-************************* |
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456 | #D- |
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457 | |
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458 | #D-#================================================== |
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459 | #D-function IGCM_sys_Rsync_out |
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460 | #D-* Purpose: treat return val of rsync |
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461 | #D-* Examples: IGCM_sys_Rsync_out out_RET_rsync |
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462 | #D- Error values and explanations can depend on your system version. |
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463 | function IGCM_sys_Rsync_out { |
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464 | IGCM_debug_PushStack "IGCM_sys_Rsync_out" $@ |
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465 | if ( $DEBUG_sys ) ; then |
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466 | echo "IGCM_sys_UnTar :" $@ |
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467 | fi |
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468 | |
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469 | typeset status |
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470 | status=$1 |
---|
471 | |
---|
472 | if [ ! $status ] ; then |
---|
473 | IGCM_debug_Print 1 "IGCM_sys_Rsync_out need an argument" |
---|
474 | IGCM_debug_PopStack "IGCM_sys_Rsync_out" |
---|
475 | return |
---|
476 | fi |
---|
477 | |
---|
478 | case $status in |
---|
479 | 0) ;; |
---|
480 | 1) IGCM_debug_Print 1 "rsync error RERR_SYNTAX : Syntax or usage error";; |
---|
481 | 2) IGCM_debug_Print 1 "rsync error RERR_PROTOCOL : Protocol incompatibility";; |
---|
482 | 3) IGCM_debug_Print 1 "rsync error RERR_FILESELECT : Errors selecting input/output files, dirs";; |
---|
483 | 4) IGCM_debug_Print 1 "rsync error RERR_UNSUPPORTED : Requested action not supported." |
---|
484 | IGCM_debug_Print 1 "An attempt was made to manipulate 64-bit files on a platform that cannot support them" |
---|
485 | IGCM_debug_Print 1 "Or an option was specified that is supported by the client and not by the server.";; |
---|
486 | 5) IGCM_debug_Print 1 "rsync error : Error starting client-server protocol";; |
---|
487 | 10) IGCM_debug_Print 1 "rsync error RERR_SOCKETIO : Error in socket I/O";; |
---|
488 | 11) IGCM_debug_Print 1 "rsync error RERR_FILEIO: Error in file I/O";; |
---|
489 | 12) IGCM_debug_Print 1 "rsync error RERR_STREAMIO : Error in rsync protocol data stream";; |
---|
490 | 13) IGCM_debug_Print 1 "rsync error RERR_MESSAGEIO : Errors with program diagnostics";; |
---|
491 | 14) IGCM_debug_Print 1 "rsync error RERR_IPC : Error in IPC code";; |
---|
492 | 20) IGCM_debug_Print 1 "rsync error RERR_SIGNAL : Received SIGUSR1 or SIGINT";; |
---|
493 | 21) IGCM_debug_Print 1 "rsync error RERR_WAITCHILD : Some error returned by waitpid()";; |
---|
494 | 22) IGCM_debug_Print 1 "rsync error RERR_MALLOC : Error allocating core memory buffers";; |
---|
495 | 23) IGCM_debug_Print 1 "rsync error : Partial transfer due to error";; |
---|
496 | 24) IGCM_debug_Print 1 "rsync error : Partial transfer due to vanished source files";; |
---|
497 | 30) IGCM_debug_Print 1 "rsync error : Timeout in data send/receive";; |
---|
498 | *) IGCM_debug_Print 1 "rsync error : return code of rsync unknown :" $status;; |
---|
499 | esac |
---|
500 | |
---|
501 | IGCM_debug_PopStack "IGCM_sys_Rsync_out" |
---|
502 | } |
---|
503 | |
---|
504 | #D-#================================================== |
---|
505 | #D-function IGCM_sys_Miror_libIGCM |
---|
506 | #D-* Purpose: Mirror libIGCM PATH and lib to frontend |
---|
507 | #D-* Examples: |
---|
508 | #D- |
---|
509 | function IGCM_sys_Mirror_libIGCM { |
---|
510 | IGCM_debug_PushStack "IGCM_sys_Mirror_libIGCM" |
---|
511 | if ( $DEBUG_sys ) ; then |
---|
512 | echo "IGCM_sys_Mirror_libIGCM" |
---|
513 | fi |
---|
514 | |
---|
515 | typeset status |
---|
516 | |
---|
517 | mkdir -p ${HOME}/MIRROR/${PATHlibIGCM} |
---|
518 | |
---|
519 | echo ${RSYNC} ${RSYNC_opt} ${libIGCM} ${HOME}/MIRROR/${PATHlibIGCM} > ${OUTCOMMAND_PATH}/out_command_${LOGIN}.$$ 2>&1 |
---|
520 | ${RSYNC} ${RSYNC_opt} ${libIGCM} ${HOME}/MIRROR/${PATHlibIGCM} >> ${OUTCOMMAND_PATH}/out_command_${LOGIN}.$$ 2>&1 |
---|
521 | status=$? |
---|
522 | |
---|
523 | if [ ${status} -gt 0 ] ; then |
---|
524 | echo "IGCM_sys_Mirror_libIGCM Warning : no libIGCM on frontend." |
---|
525 | cat ${OUTCOMMAND_PATH}/out_command_${LOGIN}.$$ |
---|
526 | fi |
---|
527 | IGCM_debug_PopStack "IGCM_sys_Mirror_libIGCM" |
---|
528 | } |
---|
529 | |
---|
530 | #D-#================================================== |
---|
531 | #D-function IGCM_sys_Cp |
---|
532 | #D-* Purpose: generic cp |
---|
533 | #D-* Examples: |
---|
534 | #D- |
---|
535 | function IGCM_sys_Cp { |
---|
536 | IGCM_debug_PushStack "IGCM_sys_Cp" $@ |
---|
537 | if ( $DEBUG_sys ) ; then |
---|
538 | echo "IGCM_sys_Cp :" $@ |
---|
539 | fi |
---|
540 | |
---|
541 | typeset status |
---|
542 | |
---|
543 | echo cp $@ > ${OUTCOMMAND_PATH}/out_command_${LOGIN}.$$ 2>&1 |
---|
544 | \cp $@ >> ${OUTCOMMAND_PATH}/out_command_${LOGIN}.$$ 2>&1 |
---|
545 | status=$? |
---|
546 | |
---|
547 | if [ ${status} -gt 0 ] ; then |
---|
548 | echo "IGCM_sys_Cp : error code ${status}" |
---|
549 | cat ${OUTCOMMAND_PATH}/out_command_${LOGIN}.$$ |
---|
550 | IGCM_debug_Exit "IGCM_sys_Cp" |
---|
551 | else |
---|
552 | \rm ${OUTCOMMAND_PATH}/out_command_${LOGIN}.$$ |
---|
553 | fi |
---|
554 | IGCM_debug_PopStack "IGCM_sys_Cp" |
---|
555 | } |
---|
556 | |
---|
557 | #D-#================================================== |
---|
558 | #D-function IGCM_sys_Rm |
---|
559 | #D-* Purpose: generic rm |
---|
560 | #D-* Examples: |
---|
561 | #D- |
---|
562 | function IGCM_sys_Rm { |
---|
563 | IGCM_debug_PushStack "IGCM_sys_Rm" $@ |
---|
564 | if ( $DEBUG_sys ) ; then |
---|
565 | echo "IGCM_sys_Rm :" $@ |
---|
566 | fi |
---|
567 | |
---|
568 | typeset status |
---|
569 | |
---|
570 | echo rm $@ > ${OUTCOMMAND_PATH}/out_command_${LOGIN}.$$ 2>&1 |
---|
571 | \rm $@ >> ${OUTCOMMAND_PATH}/out_command_${LOGIN}.$$ 2>&1 |
---|
572 | status=$? |
---|
573 | |
---|
574 | if [ ${status} -gt 0 ] ; then |
---|
575 | echo "IGCM_sys_Rm : error code ${status}" |
---|
576 | cat ${OUTCOMMAND_PATH}/out_command_${LOGIN}.$$ |
---|
577 | IGCM_debug_Exit "IGCM_sys_Rm" |
---|
578 | else |
---|
579 | \rm ${OUTCOMMAND_PATH}/out_command_${LOGIN}.$$ |
---|
580 | fi |
---|
581 | IGCM_debug_PopStack "IGCM_sys_Rm" |
---|
582 | } |
---|
583 | |
---|
584 | #D-#================================================== |
---|
585 | #D-function IGCM_sys_Mv |
---|
586 | #D-* Purpose: generic move |
---|
587 | #D-* Examples: |
---|
588 | #D- |
---|
589 | function IGCM_sys_Mv { |
---|
590 | IGCM_debug_PushStack "IGCM_sys_Mv" $@ |
---|
591 | if ( $DEBUG_sys ) ; then |
---|
592 | echo "IGCM_sys_Mv :" $@ |
---|
593 | fi |
---|
594 | |
---|
595 | if [ $DRYRUN = 0 ]; then |
---|
596 | |
---|
597 | typeset status |
---|
598 | |
---|
599 | echo mv $@ > ${OUTCOMMAND_PATH}/out_command_${LOGIN}.$$ 2>&1 |
---|
600 | \mv $@ >> ${OUTCOMMAND_PATH}/out_command_${LOGIN}.$$ 2>&1 |
---|
601 | status=$? |
---|
602 | |
---|
603 | if [ ${status} -gt 0 ] ; then |
---|
604 | echo "IGCM_sys_Mv : error code ${status}" |
---|
605 | cat ${OUTCOMMAND_PATH}/out_command_${LOGIN}.$$ |
---|
606 | IGCM_debug_Exit "IGCM_sys_Mv" |
---|
607 | else |
---|
608 | \rm ${OUTCOMMAND_PATH}/out_command_${LOGIN}.$$ |
---|
609 | fi |
---|
610 | fi |
---|
611 | IGCM_debug_PopStack "IGCM_sys_Mv" |
---|
612 | } |
---|
613 | |
---|
614 | #D-#================================================== |
---|
615 | #D-function IGCM_sys_Get_Master |
---|
616 | #D-* Purpose: Copy a complete directory from MASTER filesystem |
---|
617 | #D-* Examples: |
---|
618 | #D- |
---|
619 | function IGCM_sys_Get_Master { |
---|
620 | IGCM_debug_PushStack "IGCM_sys_Get_Master" $@ |
---|
621 | if ( $DEBUG_sys ) ; then |
---|
622 | echo "IGCM_sys_Get_Master :" $@ |
---|
623 | fi |
---|
624 | if [ $DRYRUN = 0 ]; then |
---|
625 | if ( [ ! -d ${1} ] && [ ! -f ${1} ] ) ; then |
---|
626 | echo "WARNING : IGCM_sys_Get_Master ${1} DOES NOT EXIST ." |
---|
627 | IGCM_debug_PopStack "IGCM_sys_Get_Master" |
---|
628 | return |
---|
629 | fi |
---|
630 | |
---|
631 | typeset NB_ESSAI DELAI status i |
---|
632 | # number of tentative |
---|
633 | NB_ESSAI=3 |
---|
634 | # time delay between tentative |
---|
635 | DELAI=2 |
---|
636 | |
---|
637 | i=0 |
---|
638 | while [ $i -lt $NB_ESSAI ] ; do |
---|
639 | \cp -urL $1 $2 > ${OUTCOMMAND_PATH}/out_command_${LOGIN}.$$ 2>&1 |
---|
640 | status=$? |
---|
641 | if [ ${status} -gt 0 ]; then |
---|
642 | IGCM_debug_Print 2 "IGCM_sys_Get_Master : cp failed error code ${status} ${i}/${NB_ESSAI}" |
---|
643 | IGCM_debug_Print 2 "IGCM_sys_Get_Master : sleep ${DELAI} seconds and try again." |
---|
644 | sleep $DELAI |
---|
645 | else |
---|
646 | break |
---|
647 | fi |
---|
648 | (( i = i + 1 )) |
---|
649 | done |
---|
650 | |
---|
651 | if [ ${status} -gt 0 ] ; then |
---|
652 | echo "IGCM_sys_Get_Master : error." |
---|
653 | cat ${OUTCOMMAND_PATH}/out_command_${LOGIN}.$$ |
---|
654 | IGCM_debug_Exit "IGCM_sys_Get_Master" |
---|
655 | else |
---|
656 | \rm ${OUTCOMMAND_PATH}/out_command_${LOGIN}.$$ |
---|
657 | fi |
---|
658 | fi |
---|
659 | IGCM_debug_PopStack "IGCM_sys_Get_Master" |
---|
660 | } |
---|
661 | |
---|
662 | #==================================================== |
---|
663 | #- Call IGCM_sys_Mirror_libIGCM now ! |
---|
664 | if ( $MirrorlibIGCM ) ; then |
---|
665 | IGCM_sys_Mirror_libIGCM |
---|
666 | fi |
---|
667 | |
---|
668 | #D-#================================================== |
---|
669 | #D-function IGCM_sys_PutBuffer_Rest |
---|
670 | #D-* Purpose: Put computied restarts on ${SCRATCHDIR}. |
---|
671 | #D- File and target directory must exist. |
---|
672 | #D-* Examples: |
---|
673 | #D- |
---|
674 | function IGCM_sys_PutBuffer_Rest { |
---|
675 | IGCM_debug_PushStack "IGCM_sys_PutBuffer_Rest" $@ |
---|
676 | if ( $DEBUG_sys ) ; then |
---|
677 | echo "IGCM_sys_PutBuffer_Rest :" $@ |
---|
678 | fi |
---|
679 | |
---|
680 | if [ $DRYRUN = 0 ]; then |
---|
681 | if [ ! -f ${1} ] ; then |
---|
682 | # The file is missing |
---|
683 | if [ X${3} = X'OPTIONAL' ] ; then |
---|
684 | echo "WARINING : IGCM_sys_PutBuffer_Rest ${1} DOES NOT EXIST ." |
---|
685 | IGCM_debug_Print 1 "IGCM_sys_PutBuffer_Rest: Optional restart file ${1} is missing, now continue." |
---|
686 | else |
---|
687 | echo "ERROR : IGCM_sys_PutBuffer_Rest ${1} DOES NOT EXIST ." |
---|
688 | IGCM_debug_Exit "IGCM_sys_PutBuffer_Rest" |
---|
689 | fi |
---|
690 | |
---|
691 | else |
---|
692 | # The file exist |
---|
693 | typeset status |
---|
694 | # |
---|
695 | # USUAL WAY |
---|
696 | \cp $1 $2 > ${OUTCOMMAND_PATH}/out_command_${LOGIN}.$$ 2>&1 |
---|
697 | status=$? |
---|
698 | |
---|
699 | if [ ${status} -gt 0 ] ; then |
---|
700 | echo "IGCM_sys_PutBuffer_Rest : error code ${status}" |
---|
701 | [ -f ${2} ] && ls -l ${2} |
---|
702 | [ -f ${2}/${1} ] && ls -l ${2}/${1} |
---|
703 | cat ${OUTCOMMAND_PATH}/out_command_${LOGIN}.$$ |
---|
704 | IGCM_debug_Exit "IGCM_sys_PutBuffer_Rest" |
---|
705 | else |
---|
706 | if [ X${JobType} = XRUN ] ; then |
---|
707 | [ -f ${2} ] && IGCM_sys_Chmod 444 ${2} |
---|
708 | [ -f ${2}/${1} ] && IGCM_sys_Chmod 444 ${2}/${1} |
---|
709 | fi |
---|
710 | \rm ${OUTCOMMAND_PATH}/out_command_${LOGIN}.$$ |
---|
711 | fi |
---|
712 | fi |
---|
713 | fi |
---|
714 | IGCM_debug_PopStack "IGCM_sys_PutBuffer_Rest" |
---|
715 | } |
---|
716 | |
---|
717 | #D-#================================================== |
---|
718 | #D-function IGCM_sys_PrepareTaredRestart |
---|
719 | #D-* Purpose: Prepare tared restart to be access by computing job. |
---|
720 | #D-* Examples: |
---|
721 | #D- |
---|
722 | function IGCM_sys_PrepareTaredRestart { |
---|
723 | IGCM_debug_PushStack "IGCM_sys_PrepareTaredRestart" $@ |
---|
724 | if [ $DRYRUN = 0 ]; then |
---|
725 | [ ! -f $( basename $1 ) ] && IGCM_sys_Get $1 . |
---|
726 | fi |
---|
727 | IGCM_debug_PopStack "IGCM_sys_PrepareTaredRestart" |
---|
728 | } |
---|
729 | |
---|
730 | #D-#================================================== |
---|
731 | #D-function IGCM_sys_PutBuffer_Out |
---|
732 | #D-* Purpose: Copy a file on the buffer filesystem after having chmod it in readonly |
---|
733 | #D-* Examples: |
---|
734 | #D- |
---|
735 | function IGCM_sys_PutBuffer_Out { |
---|
736 | IGCM_debug_PushStack "IGCM_sys_PutBuffer_Out" $@ |
---|
737 | if ( $DEBUG_sys ) ; then |
---|
738 | echo "IGCM_sys_PutBuffer_Out :" $@ |
---|
739 | fi |
---|
740 | |
---|
741 | typeset NB_ESSAI DELAI status i exist skip |
---|
742 | typeset fileDeviceNumberInHex directoryDeviceNumberInHex |
---|
743 | |
---|
744 | # number of tentative |
---|
745 | NB_ESSAI=3 |
---|
746 | # time delay between tentative |
---|
747 | DELAI=2 |
---|
748 | |
---|
749 | if [ $DRYRUN = 0 ]; then |
---|
750 | if [ ! -f ${1} ] ; then |
---|
751 | echo "WARNING : IGCM_sys_PutBuffer_Out ${1} DOES NOT EXIST ." |
---|
752 | IGCM_debug_PopStack "IGCM_sys_PutBuffer_Out" |
---|
753 | return 1 |
---|
754 | fi |
---|
755 | # |
---|
756 | IGCM_sys_Mkdir $( dirname $2 ) |
---|
757 | # |
---|
758 | |
---|
759 | exist=false |
---|
760 | skip=false |
---|
761 | if [ -f $2 ] ; then |
---|
762 | IGCM_debug_Print 1 "$2 already exist" |
---|
763 | exist=true |
---|
764 | if [ "X$( diff $1 $2 )" = X ] ; then |
---|
765 | IGCM_debug_Print 2 "$1 and $2 are the same file, we skip the copy" |
---|
766 | status=0 |
---|
767 | skip=true |
---|
768 | else |
---|
769 | IGCM_debug_Print 2 "$1 and $2 are not the same file, we force the copy" |
---|
770 | skip=false |
---|
771 | fi |
---|
772 | fi |
---|
773 | # |
---|
774 | if ( [ X${exist} = Xtrue ] && [ X${skip} = Xfalse ] ) ; then |
---|
775 | IGCM_sys_Chmod u+w $2 |
---|
776 | fi |
---|
777 | |
---|
778 | if [ X${skip} = Xfalse ] ; then |
---|
779 | i=0 |
---|
780 | while [ $i -lt $NB_ESSAI ] ; do |
---|
781 | # Identify file system |
---|
782 | fileDeviceNumberInHex=$( stat -c %d $1 ) |
---|
783 | status=$? |
---|
784 | if [ ${status} -gt 0 ] ; then |
---|
785 | IGCM_debug_Exit "IGCM_sys_PutBuffer_Out" |
---|
786 | fi |
---|
787 | # Identify file system |
---|
788 | directoryDeviceNumberInHex=$( stat -c %d $( dirname $2 ) ) |
---|
789 | status=$? |
---|
790 | if [ ${status} -gt 0 ] ; then |
---|
791 | IGCM_debug_Exit "IGCM_sys_PutBuffer_Out" |
---|
792 | fi |
---|
793 | |
---|
794 | if [ ${fileDeviceNumberInHex} -ne ${directoryDeviceNumberInHex} ] ; then |
---|
795 | # They are not on the same device. USUAL WAY |
---|
796 | \cp $1 $2 > ${OUTCOMMAND_PATH}/out_command_${LOGIN}.$$ 2>&1 |
---|
797 | status=$? |
---|
798 | else |
---|
799 | # They are on the same device. USUAL WAY |
---|
800 | \mv $1 $2 > ${OUTCOMMAND_PATH}/out_command_${LOGIN}.$$ 2>&1 |
---|
801 | status=$? |
---|
802 | fi |
---|
803 | if [ ${status} -gt 0 ]; then |
---|
804 | IGCM_debug_Print 2 "IGCM_sys_PutBuffer_Out : cp failed error code ${status} ${i}/${NB_ESSAI}" |
---|
805 | IGCM_debug_Print 2 "IGCM_sys_PutBuffer_Out : sleep ${DELAI} seconds and try again." |
---|
806 | [ -f ${2} ] && ls -l ${2} |
---|
807 | [ -f ${2}/${1} ] && ls -l ${2}/${1} |
---|
808 | sleep $DELAI |
---|
809 | else |
---|
810 | break |
---|
811 | fi |
---|
812 | (( i = i + 1 )) |
---|
813 | done |
---|
814 | fi |
---|
815 | |
---|
816 | if [ ${status} -gt 0 ] ; then |
---|
817 | echo "IGCM_sys_PutBuffer_Out : error." |
---|
818 | [ -f ${2} ] && ls -l ${2} |
---|
819 | [ -f ${2}/${1} ] && ls -l ${2}/${1} |
---|
820 | cat ${OUTCOMMAND_PATH}/out_command_${LOGIN}.$$ |
---|
821 | IGCM_debug_Exit "IGCM_sys_PutBuffer_Out" |
---|
822 | else |
---|
823 | |
---|
824 | if [ X${JobType} = XRUN ] ; then |
---|
825 | if [ X${3} = X ] ; then |
---|
826 | [ -f ${2} ] && IGCM_sys_Chmod 444 ${2} |
---|
827 | [ -f ${2}/${1} ] && IGCM_sys_Chmod 444 ${2}/${1} |
---|
828 | fi |
---|
829 | fi |
---|
830 | |
---|
831 | \rm ${OUTCOMMAND_PATH}/out_command_${LOGIN}.$$ |
---|
832 | fi |
---|
833 | fi |
---|
834 | IGCM_debug_PopStack "IGCM_sys_PutBuffer_Out" |
---|
835 | return 0 |
---|
836 | } |
---|
837 | |
---|
838 | #D-#================================================== |
---|
839 | #D-function IGCM_sys_GetBuffer |
---|
840 | #D-* Purpose: Get a file from ${SCRATCHDIR} |
---|
841 | #D-* Examples: IGCM_sys_GetBuffer myfile /destpath/myfile_with_PREFIX |
---|
842 | #D- IGCM_sys_GetBuffer /l Array_contain_myfiles /destpath/ |
---|
843 | function IGCM_sys_GetBuffer { |
---|
844 | IGCM_debug_PushStack "IGCM_sys_GetBuffer" $@ |
---|
845 | |
---|
846 | typeset DEST buf_liste target file_work |
---|
847 | typeset NB_ESSAI DELAI status i |
---|
848 | |
---|
849 | if ( $DEBUG_sys ) ; then |
---|
850 | echo "IGCM_sys_GetBuffer :" $@ |
---|
851 | fi |
---|
852 | |
---|
853 | # number of tentative |
---|
854 | NB_ESSAI=3 |
---|
855 | # time delay between tentative |
---|
856 | DELAI=2 |
---|
857 | |
---|
858 | if [ $DRYRUN -le 2 ]; then |
---|
859 | if [ X${1} = X'/l' ] ; then |
---|
860 | eval set +A buf_liste \${${2}} |
---|
861 | else |
---|
862 | eval set +A buf_liste ${1} |
---|
863 | fi |
---|
864 | eval DEST=\${${#}} |
---|
865 | |
---|
866 | #USUAL WAY |
---|
867 | if [ X${1} = X'/l' ] ; then |
---|
868 | for target in ${buf_liste[*]} ; do |
---|
869 | local_file=$( basename ${target} ) |
---|
870 | i=0 |
---|
871 | while [ $i -lt $NB_ESSAI ] ; do |
---|
872 | \cp ${target} ${DEST}/${local_file} >> ${OUTCOMMAND_PATH}/out_command_${LOGIN}.$$ 2>&1 |
---|
873 | status=$? |
---|
874 | if [ ${status} -gt 0 ]; then |
---|
875 | IGCM_debug_Print 2 "IGCM_sys_GetBuffer : cp failed error code ${status} ${i}/${NB_ESSAI}" |
---|
876 | IGCM_debug_Print 2 "IGCM_sys_GetBuffer : sleep ${DELAI} seconds and try again." |
---|
877 | sleep $DELAI |
---|
878 | else |
---|
879 | break |
---|
880 | fi |
---|
881 | (( i = i + 1 )) |
---|
882 | done |
---|
883 | if [ ${status} -gt 0 ] ; then |
---|
884 | echo "IGCM_sys_Get : error" |
---|
885 | cat ${OUTCOMMAND_PATH}/out_command_${LOGIN}.$$ |
---|
886 | \rm ${OUTCOMMAND_PATH}/out_command_${LOGIN}.$$ |
---|
887 | IGCM_debug_Exit "IGCM_sys_GetBuffer" |
---|
888 | else |
---|
889 | \rm ${OUTCOMMAND_PATH}/out_command_${LOGIN}.$$ |
---|
890 | fi |
---|
891 | done |
---|
892 | else |
---|
893 | i=0 |
---|
894 | while [ $i -lt $NB_ESSAI ] ; do |
---|
895 | \cp ${buf_liste} ${DEST} >> ${OUTCOMMAND_PATH}/out_command_${LOGIN}.$$ 2>&1 |
---|
896 | status=$? |
---|
897 | if [ ${status} -gt 0 ]; then |
---|
898 | IGCM_debug_Print 2 "IGCM_sys_GetBuffer : cp failed error code ${status} ${i}/${NB_ESSAI}" |
---|
899 | IGCM_debug_Print 2 "IGCM_sys_GetBuffer : sleep ${DELAI} seconds and try again." |
---|
900 | sleep $DELAI |
---|
901 | else |
---|
902 | break |
---|
903 | fi |
---|
904 | (( i = i + 1 )) |
---|
905 | done |
---|
906 | if [ ${status} -gt 0 ] ; then |
---|
907 | echo "IGCM_sys_Get : error" |
---|
908 | cat ${OUTCOMMAND_PATH}/out_command_${LOGIN}.$$ |
---|
909 | \rm ${OUTCOMMAND_PATH}/out_command_${LOGIN}.$$ |
---|
910 | IGCM_debug_Exit "IGCM_sys_GetBuffer" |
---|
911 | else |
---|
912 | \rm ${OUTCOMMAND_PATH}/out_command_${LOGIN}.$$ |
---|
913 | fi |
---|
914 | fi |
---|
915 | fi |
---|
916 | IGCM_debug_PopStack "IGCM_sys_GetBuffer" |
---|
917 | } |
---|
918 | |
---|
919 | #D-#================================================== |
---|
920 | #D-function IGCM_sys_GetDate_FichWork |
---|
921 | #D-* Purpose: donne la date filesys d'un fichier sur le filesystem WORK |
---|
922 | #D-* Examples: |
---|
923 | #D- |
---|
924 | function IGCM_sys_GetDate_FichWork { |
---|
925 | IGCM_debug_PushStack "IGCM_sys_GetDate_FichWork" $@ |
---|
926 | if ( $DEBUG_sys ) ; then |
---|
927 | echo "IGCM_sys_GetDate_FichWork :" $@ |
---|
928 | fi |
---|
929 | |
---|
930 | if [ $# -ge 3 ] ; then |
---|
931 | mode=$3 |
---|
932 | TimeStyle=$4 |
---|
933 | else |
---|
934 | mode="default" |
---|
935 | TimeStyle="%Y%m%d%H%M%S" |
---|
936 | fi |
---|
937 | |
---|
938 | typeset dateF |
---|
939 | set +A dateF -- $( ls -l --full-time --time-style=+"${TimeStyle}" ${1} ) |
---|
940 | |
---|
941 | case $mode in |
---|
942 | "default") |
---|
943 | eval ${2}=${dateF[5]} |
---|
944 | ;; |
---|
945 | "SplitFields") |
---|
946 | eval ${2}="${dateF[5]}\ ${dateF[6]}" |
---|
947 | ;; |
---|
948 | esac |
---|
949 | |
---|
950 | # donne la date filesys d'un fichier sur la machine work |
---|
951 | IGCM_debug_PopStack "IGCM_sys_GetDate_FichWork" |
---|
952 | } |
---|
953 | |
---|
954 | #D-#================================================== |
---|
955 | #D-function IGCM_sys_rebuild |
---|
956 | #D-* Purpose: rebuild parallel files |
---|
957 | #D-* Examples: |
---|
958 | #D- |
---|
959 | function IGCM_sys_rebuild { |
---|
960 | IGCM_debug_PushStack "IGCM_sys_rebuild" $@ |
---|
961 | if ( $DEBUG_sys ) ; then |
---|
962 | echo "IGCM_sys_rebuild :" $@ |
---|
963 | fi |
---|
964 | |
---|
965 | typeset NB_ESSAI DELAI status i firstArg |
---|
966 | # number of tentative |
---|
967 | NB_ESSAI=3 |
---|
968 | # time delay between tentative |
---|
969 | DELAI=2 |
---|
970 | |
---|
971 | i=0 |
---|
972 | while [ $i -lt $NB_ESSAI ] ; do |
---|
973 | rebuild -f -o $@ > ${OUTCOMMAND_PATH}/out_command_${LOGIN}.$$ 2>&1 |
---|
974 | status=$? |
---|
975 | if [ ${status} -gt 0 ] ; then |
---|
976 | IGCM_debug_Print 2 "IGCM_sys_rebuild : error code ${status}" |
---|
977 | cat ${OUTCOMMAND_PATH}/out_command_${LOGIN}.$$ |
---|
978 | \rm ${OUTCOMMAND_PATH}/out_command_${LOGIN}.$$ |
---|
979 | IGCM_debug_Print 2 "IGCM_sys_rebuild : ${i}/${NB_ESSAI} sleep ${DELAI} seconds and try again." |
---|
980 | firstArg=${1} |
---|
981 | \rm ${firstArg} |
---|
982 | sleep $DELAI |
---|
983 | else |
---|
984 | \rm ${OUTCOMMAND_PATH}/out_command_${LOGIN}.$$ |
---|
985 | break |
---|
986 | fi |
---|
987 | (( i = i + 1 )) |
---|
988 | done |
---|
989 | |
---|
990 | if [ ${status} -gt 0 ] ; then |
---|
991 | echo "IGCM_sys_rebuild : rebuild error code is ${status}" |
---|
992 | IGCM_debug_Exit "rebuild" |
---|
993 | fi |
---|
994 | |
---|
995 | IGCM_debug_PopStack "IGCM_sys_rebuild" |
---|
996 | } |
---|
997 | |
---|
998 | #D-#================================================== |
---|
999 | #D-function IGCM_sys_rebuild_station |
---|
1000 | #D-* Purpose: rebuild parallel files describing station |
---|
1001 | #D-* Examples: |
---|
1002 | #D- |
---|
1003 | function IGCM_sys_rebuild_station { |
---|
1004 | IGCM_debug_PushStack "IGCM_sys_rebuild_station" $@ |
---|
1005 | typeset i list_opt file_in file_out prefix_invert list_invert |
---|
1006 | if ( $DEBUG_sys ) ; then |
---|
1007 | echo "IGCM_sys_rebuild_station :" $@ |
---|
1008 | fi |
---|
1009 | |
---|
1010 | # Station re-ordering is too expansive to be run within libIGCM |
---|
1011 | # This is due to (ncpdq - nrcat - ncpdq) I/O sequence. |
---|
1012 | # This re-ordering must be done "in memory" by the cmorization process |
---|
1013 | |
---|
1014 | # Only LMDZ text output contains the exact ordering of the station. |
---|
1015 | # We isolate this in the code below: |
---|
1016 | # 0 38 -157.5000000000000 70.98591549295774 |
---|
1017 | # 0 54 27.49999999999999 67.18309859154928 |
---|
1018 | # 0 56 -62.50000000000001 82.39436619718309 |
---|
1019 | # 0 79 12.49999999999999 78.59154929577466 |
---|
1020 | # 0 116 -165.0000000000000 76.05633802816901 |
---|
1021 | # 0 117 130.0000000000000 70.98591549295774 |
---|
1022 | # 0 118 110.0000000000000 87.46478873239437 |
---|
1023 | # 1 40 4.999999999999995 51.97183098591550 |
---|
1024 | |
---|
1025 | list_opt=$@ |
---|
1026 | |
---|
1027 | # Invert Axis : t,x -> x,t |
---|
1028 | # t,pres,x -> x,t,pres |
---|
1029 | # So that we can concatenate along x |
---|
1030 | i=0 |
---|
1031 | for file_in in ${list_opt} ; do |
---|
1032 | (( i = i + 1)) |
---|
1033 | [ ${i} = 1 ] && file_out=${file_in} && continue |
---|
1034 | # detect time counter and do the job only if present |
---|
1035 | var_unlim=$(ncdump -h ${file_in} | grep UNLIMITED | cut -d ' ' -f 1 | sed -e 's/^[ \t]*//' -e 's/[ \t]*$//') |
---|
1036 | if [ X${var_unlim} = Xtime_counter ] ; then |
---|
1037 | prefix_invert=$( basename ${file_in} .nc ) |
---|
1038 | IGCM_sys_ncpdq -a x,time_counter -a x,time_counter,presnivs ${file_in} ${prefix_invert}_xt.nc |
---|
1039 | list_invert[${#list_invert[*]}]=${prefix_invert}_xt.nc |
---|
1040 | fi |
---|
1041 | done |
---|
1042 | |
---|
1043 | # Concatenate |
---|
1044 | IGCM_sys_ncrcat ${list_invert[*]} histstn_xt.nc |
---|
1045 | |
---|
1046 | # Re-ivert file |
---|
1047 | IGCM_sys_ncpdq -a time_counter,x -a time_counter,presnivs,x histstn_xt.nc ${file_out} |
---|
1048 | |
---|
1049 | IGCM_debug_PopStack "IGCM_sys_rebuild_station" |
---|
1050 | } |
---|
1051 | |
---|
1052 | ############################################################## |
---|
1053 | # NCO OPERATOR |
---|
1054 | |
---|
1055 | #D-#================================================== |
---|
1056 | #D-function IGCM_sys_ncap2 |
---|
1057 | #D-* Purpose: encapsulate ncap2 call so as to manage error code and retry |
---|
1058 | #D-* Examples: |
---|
1059 | #D- |
---|
1060 | function IGCM_sys_ncap2 { |
---|
1061 | IGCM_debug_PushStack "IGCM_sys_ncap2" $@ |
---|
1062 | if ( $DEBUG_sys ) ; then |
---|
1063 | echo "IGCM_sys_ncap2 :" $@ |
---|
1064 | fi |
---|
1065 | |
---|
1066 | typeset NB_ESSAI DELAI status i |
---|
1067 | # number of tentative |
---|
1068 | NB_ESSAI=3 |
---|
1069 | # time delay between tentative |
---|
1070 | DELAI=2 |
---|
1071 | |
---|
1072 | i=0 |
---|
1073 | while [ $i -lt $NB_ESSAI ] ; do |
---|
1074 | ncap2 -C --buffer_size 838860800 "$@" > ${OUTCOMMAND_PATH}/out_command_${LOGIN}.$$ 2>&1 |
---|
1075 | status=$? |
---|
1076 | if [ ${status} -gt 0 ] ; then |
---|
1077 | IGCM_debug_Print 2 "IGCM_sys_ncap2 : error code ${status}" |
---|
1078 | cat ${OUTCOMMAND_PATH}/out_command_${LOGIN}.$$ |
---|
1079 | \rm ${OUTCOMMAND_PATH}/out_command_${LOGIN}.$$ |
---|
1080 | IGCM_debug_Print 2 "IGCM_sys_ncap2 : ${i}/${NB_ESSAI} sleep ${DELAI} seconds and try again." |
---|
1081 | sleep $DELAI |
---|
1082 | else |
---|
1083 | \rm ${OUTCOMMAND_PATH}/out_command_${LOGIN}.$$ |
---|
1084 | break |
---|
1085 | fi |
---|
1086 | (( i = i + 1 )) |
---|
1087 | done |
---|
1088 | |
---|
1089 | if [ ${status} -gt 0 ] ; then |
---|
1090 | echo "IGCM_sys_ncap2 : ncap2 error" |
---|
1091 | IGCM_debug_Exit "ncap2" |
---|
1092 | fi |
---|
1093 | |
---|
1094 | IGCM_debug_PopStack "IGCM_sys_ncap2" |
---|
1095 | } |
---|
1096 | |
---|
1097 | #D-#================================================== |
---|
1098 | #D-function IGCM_sys_ncatted |
---|
1099 | #D-* Purpose: encapsulate ncatted call so as to manage error code and retry |
---|
1100 | #D-* Examples: |
---|
1101 | #D- |
---|
1102 | function IGCM_sys_ncatted { |
---|
1103 | IGCM_debug_PushStack "IGCM_sys_ncatted" $@ |
---|
1104 | if ( $DEBUG_sys ) ; then |
---|
1105 | echo "IGCM_sys_ncatted :" $@ |
---|
1106 | fi |
---|
1107 | |
---|
1108 | typeset NB_ESSAI DELAI status i |
---|
1109 | # number of tentative |
---|
1110 | NB_ESSAI=3 |
---|
1111 | # time delay between tentative |
---|
1112 | DELAI=2 |
---|
1113 | |
---|
1114 | i=0 |
---|
1115 | while [ $i -lt $NB_ESSAI ] ; do |
---|
1116 | ncatted "$@" > ${OUTCOMMAND_PATH}/out_command_${LOGIN}.$$ 2>&1 |
---|
1117 | status=$? |
---|
1118 | if [ ${status} -gt 0 ] ; then |
---|
1119 | IGCM_debug_Print 2 "IGCM_sys_ncatted : error code ${status}" |
---|
1120 | cat ${OUTCOMMAND_PATH}/out_command_${LOGIN}.$$ |
---|
1121 | \rm ${OUTCOMMAND_PATH}/out_command_${LOGIN}.$$ |
---|
1122 | IGCM_debug_Print 2 "IGCM_sys_ncatted : ${i}/${NB_ESSAI} sleep ${DELAI} seconds and try again." |
---|
1123 | sleep $DELAI |
---|
1124 | else |
---|
1125 | \rm ${OUTCOMMAND_PATH}/out_command_${LOGIN}.$$ |
---|
1126 | break |
---|
1127 | fi |
---|
1128 | (( i = i + 1 )) |
---|
1129 | done |
---|
1130 | |
---|
1131 | if [ ${status} -gt 0 ] ; then |
---|
1132 | echo "IGCM_sys_ncatted : ncatted error" |
---|
1133 | IGCM_debug_Exit "ncatted" |
---|
1134 | fi |
---|
1135 | |
---|
1136 | IGCM_debug_PopStack "IGCM_sys_ncatted" |
---|
1137 | } |
---|
1138 | |
---|
1139 | #D-#================================================== |
---|
1140 | #D-function IGCM_sys_ncbo |
---|
1141 | #D-* Purpose: encapsulate ncbo call so as to manage error code and retry |
---|
1142 | #D-* Examples: |
---|
1143 | #D- |
---|
1144 | function IGCM_sys_ncbo { |
---|
1145 | IGCM_debug_PushStack "IGCM_sys_ncbo" $@ |
---|
1146 | if ( $DEBUG_sys ) ; then |
---|
1147 | echo "IGCM_sys_ncbo :" $@ |
---|
1148 | fi |
---|
1149 | |
---|
1150 | typeset NB_ESSAI DELAI status i |
---|
1151 | # number of tentative |
---|
1152 | NB_ESSAI=3 |
---|
1153 | # time delay between tentative |
---|
1154 | DELAI=2 |
---|
1155 | |
---|
1156 | i=0 |
---|
1157 | while [ $i -lt $NB_ESSAI ] ; do |
---|
1158 | ncbo -C --buffer_size 838860800 $@ > ${OUTCOMMAND_PATH}/out_command_${LOGIN}.$$ 2>&1 |
---|
1159 | status=$? |
---|
1160 | if [ ${status} -gt 0 ] ; then |
---|
1161 | IGCM_debug_Print 2 "IGCM_sys_ncbo : error code ${status}" |
---|
1162 | cat ${OUTCOMMAND_PATH}/out_command_${LOGIN}.$$ |
---|
1163 | \rm ${OUTCOMMAND_PATH}/out_command_${LOGIN}.$$ |
---|
1164 | IGCM_debug_Print 2 "IGCM_sys_ncbo : ${i}/${NB_ESSAI} sleep ${DELAI} seconds and try again." |
---|
1165 | sleep $DELAI |
---|
1166 | else |
---|
1167 | \rm ${OUTCOMMAND_PATH}/out_command_${LOGIN}.$$ |
---|
1168 | break |
---|
1169 | fi |
---|
1170 | (( i = i + 1 )) |
---|
1171 | done |
---|
1172 | |
---|
1173 | if [ ${status} -gt 0 ] ; then |
---|
1174 | echo "IGCM_sys_ncbo : ncbo error" |
---|
1175 | IGCM_debug_Exit "ncbo" |
---|
1176 | fi |
---|
1177 | |
---|
1178 | IGCM_debug_PopStack "IGCM_sys_ncbo" |
---|
1179 | } |
---|
1180 | |
---|
1181 | #D-#================================================== |
---|
1182 | #D-function IGCM_sys_ncdif |
---|
1183 | #D-* Purpose: encapsulate ncdiff call so as to manage error code and retry |
---|
1184 | #D-* Examples: |
---|
1185 | #D- |
---|
1186 | function IGCM_sys_ncdiff { |
---|
1187 | IGCM_debug_PushStack "IGCM_sys_ncdiff" $@ |
---|
1188 | if ( $DEBUG_sys ) ; then |
---|
1189 | echo "IGCM_sys_ncdiff :" $@ |
---|
1190 | fi |
---|
1191 | |
---|
1192 | typeset NB_ESSAI DELAI status i |
---|
1193 | # number of tentative |
---|
1194 | NB_ESSAI=3 |
---|
1195 | # time delay between tentative |
---|
1196 | DELAI=2 |
---|
1197 | |
---|
1198 | i=0 |
---|
1199 | while [ $i -lt $NB_ESSAI ] ; do |
---|
1200 | ncdiff -C --buffer_size 838860800 $@ > ${OUTCOMMAND_PATH}/out_command_${LOGIN}.$$ 2>&1 |
---|
1201 | status=$? |
---|
1202 | if [ ${status} -gt 0 ] ; then |
---|
1203 | IGCM_debug_Print 2 "IGCM_sys_ncdiff : error code ${status}" |
---|
1204 | cat ${OUTCOMMAND_PATH}/out_command_${LOGIN}.$$ |
---|
1205 | \rm ${OUTCOMMAND_PATH}/out_command_${LOGIN}.$$ |
---|
1206 | IGCM_debug_Print 2 "IGCM_sys_ncdiff : ${i}/${NB_ESSAI} sleep ${DELAI} seconds and try again." |
---|
1207 | sleep $DELAI |
---|
1208 | else |
---|
1209 | \rm ${OUTCOMMAND_PATH}/out_command_${LOGIN}.$$ |
---|
1210 | break |
---|
1211 | fi |
---|
1212 | (( i = i + 1 )) |
---|
1213 | done |
---|
1214 | |
---|
1215 | if [ ${status} -gt 0 ] ; then |
---|
1216 | echo "IGCM_sys_ncdiff : ncdiff error" |
---|
1217 | IGCM_debug_Exit "ncdiff" |
---|
1218 | fi |
---|
1219 | |
---|
1220 | IGCM_debug_PopStack "IGCM_sys_ncdiff" |
---|
1221 | } |
---|
1222 | |
---|
1223 | #D-#================================================== |
---|
1224 | #D-function IGCM_sys_ncea |
---|
1225 | #D-* Purpose: encapsulate ncea call so as to manage error code and retry |
---|
1226 | #D-* Examples: |
---|
1227 | #D- |
---|
1228 | function IGCM_sys_ncea { |
---|
1229 | IGCM_debug_PushStack "IGCM_sys_ncea" $@ |
---|
1230 | if ( $DEBUG_sys ) ; then |
---|
1231 | echo "IGCM_sys_ncea :" $@ |
---|
1232 | fi |
---|
1233 | |
---|
1234 | typeset NB_ESSAI DELAI status i |
---|
1235 | # number of tentative |
---|
1236 | NB_ESSAI=3 |
---|
1237 | # time delay between tentative |
---|
1238 | DELAI=2 |
---|
1239 | |
---|
1240 | i=0 |
---|
1241 | while [ $i -lt $NB_ESSAI ] ; do |
---|
1242 | ncea -C --buffer_size 838860800 $@ > ${OUTCOMMAND_PATH}/out_command_${LOGIN}.$$ 2>&1 |
---|
1243 | status=$? |
---|
1244 | if [ ${status} -gt 0 ] ; then |
---|
1245 | IGCM_debug_Print 2 "IGCM_sys_ncea : error code ${status}" |
---|
1246 | cat ${OUTCOMMAND_PATH}/out_command_${LOGIN}.$$ |
---|
1247 | \rm ${OUTCOMMAND_PATH}/out_command_${LOGIN}.$$ |
---|
1248 | IGCM_debug_Print 2 "IGCM_sys_ncea : ${i}/${NB_ESSAI} sleep ${DELAI} seconds and try again." |
---|
1249 | sleep $DELAI |
---|
1250 | else |
---|
1251 | \rm ${OUTCOMMAND_PATH}/out_command_${LOGIN}.$$ |
---|
1252 | break |
---|
1253 | fi |
---|
1254 | (( i = i + 1 )) |
---|
1255 | done |
---|
1256 | |
---|
1257 | if [ ${status} -gt 0 ] ; then |
---|
1258 | echo "IGCM_sys_ncea : ncea error" |
---|
1259 | IGCM_debug_Exit "ncea" |
---|
1260 | fi |
---|
1261 | |
---|
1262 | IGCM_debug_PopStack "IGCM_sys_ncea" |
---|
1263 | } |
---|
1264 | |
---|
1265 | #D-#================================================== |
---|
1266 | #D-function IGCM_sys_ncecat |
---|
1267 | #D-* Purpose: encapsulate ncecat call so as to manage error code and retry |
---|
1268 | #D-* Examples: |
---|
1269 | #D- |
---|
1270 | function IGCM_sys_ncecat { |
---|
1271 | IGCM_debug_PushStack "IGCM_sys_ncecat" $@ |
---|
1272 | if ( $DEBUG_sys ) ; then |
---|
1273 | echo "IGCM_sys_ncecat :" $@ |
---|
1274 | fi |
---|
1275 | |
---|
1276 | typeset NB_ESSAI DELAI status i |
---|
1277 | # number of tentative |
---|
1278 | NB_ESSAI=3 |
---|
1279 | # time delay between tentative |
---|
1280 | DELAI=2 |
---|
1281 | |
---|
1282 | i=0 |
---|
1283 | while [ $i -lt $NB_ESSAI ] ; do |
---|
1284 | ncecat -C --buffer_size 838860800 $@ > ${OUTCOMMAND_PATH}/out_command_${LOGIN}.$$ 2>&1 |
---|
1285 | status=$? |
---|
1286 | if [ ${status} -gt 0 ] ; then |
---|
1287 | IGCM_debug_Print 2 "IGCM_sys_ncecat : error code ${status}" |
---|
1288 | cat ${OUTCOMMAND_PATH}/out_command_${LOGIN}.$$ |
---|
1289 | \rm ${OUTCOMMAND_PATH}/out_command_${LOGIN}.$$ |
---|
1290 | IGCM_debug_Print 2 "IGCM_sys_ncecat : ${i}/${NB_ESSAI} sleep ${DELAI} seconds and try again." |
---|
1291 | sleep $DELAI |
---|
1292 | else |
---|
1293 | \rm ${OUTCOMMAND_PATH}/out_command_${LOGIN}.$$ |
---|
1294 | break |
---|
1295 | fi |
---|
1296 | (( i = i + 1 )) |
---|
1297 | done |
---|
1298 | |
---|
1299 | if [ ${status} -gt 0 ] ; then |
---|
1300 | echo "IGCM_sys_ncecat : ncecat error" |
---|
1301 | IGCM_debug_Exit "ncecat" |
---|
1302 | fi |
---|
1303 | |
---|
1304 | IGCM_debug_PopStack "IGCM_sys_ncecat" |
---|
1305 | } |
---|
1306 | |
---|
1307 | #D-#================================================== |
---|
1308 | #D-function IGCM_sys_ncflint |
---|
1309 | #D-* Purpose: encapsulate ncflint call so as to manage error code and retry |
---|
1310 | #D-* Examples: |
---|
1311 | #D- |
---|
1312 | function IGCM_sys_ncflint { |
---|
1313 | IGCM_debug_PushStack "IGCM_sys_ncflint" $@ |
---|
1314 | if ( $DEBUG_sys ) ; then |
---|
1315 | echo "IGCM_sys_ncflint :" $@ |
---|
1316 | fi |
---|
1317 | |
---|
1318 | typeset NB_ESSAI DELAI status i |
---|
1319 | # number of tentative |
---|
1320 | NB_ESSAI=3 |
---|
1321 | # time delay between tentative |
---|
1322 | DELAI=2 |
---|
1323 | |
---|
1324 | i=0 |
---|
1325 | while [ $i -lt $NB_ESSAI ] ; do |
---|
1326 | ncflint -C --buffer_size 838860800 $@ > ${OUTCOMMAND_PATH}/out_command_${LOGIN}.$$ 2>&1 |
---|
1327 | status=$? |
---|
1328 | if [ ${status} -gt 0 ] ; then |
---|
1329 | IGCM_debug_Print 2 "IGCM_sys_ncflint : error code ${status}" |
---|
1330 | cat ${OUTCOMMAND_PATH}/out_command_${LOGIN}.$$ |
---|
1331 | \rm ${OUTCOMMAND_PATH}/out_command_${LOGIN}.$$ |
---|
1332 | IGCM_debug_Print 2 "IGCM_sys_ncflint : ${i}/${NB_ESSAI} sleep ${DELAI} seconds and try again." |
---|
1333 | sleep $DELAI |
---|
1334 | else |
---|
1335 | \rm ${OUTCOMMAND_PATH}/out_command_${LOGIN}.$$ |
---|
1336 | break |
---|
1337 | fi |
---|
1338 | (( i = i + 1 )) |
---|
1339 | done |
---|
1340 | |
---|
1341 | if [ ${status} -gt 0 ] ; then |
---|
1342 | echo "IGCM_sys_ncflint : ncflint error" |
---|
1343 | IGCM_debug_Exit "ncflint" |
---|
1344 | fi |
---|
1345 | |
---|
1346 | IGCM_debug_PopStack "IGCM_sys_ncflint" |
---|
1347 | } |
---|
1348 | |
---|
1349 | #D-#================================================== |
---|
1350 | #D-function IGCM_sys_ncks |
---|
1351 | #D-* Purpose: encapsulate ncks call so as to manage error code and retry |
---|
1352 | #D-* Examples: |
---|
1353 | #D- |
---|
1354 | function IGCM_sys_ncks { |
---|
1355 | IGCM_debug_PushStack "IGCM_sys_ncks" $@ |
---|
1356 | if ( $DEBUG_sys ) ; then |
---|
1357 | echo "IGCM_sys_ncks :" $@ |
---|
1358 | fi |
---|
1359 | |
---|
1360 | typeset NB_ESSAI DELAI status i |
---|
1361 | # number of tentative |
---|
1362 | NB_ESSAI=3 |
---|
1363 | # time delay between tentative |
---|
1364 | DELAI=2 |
---|
1365 | |
---|
1366 | i=0 |
---|
1367 | while [ $i -lt $NB_ESSAI ] ; do |
---|
1368 | ncks -C --buffer_size 838860800 $@ > ${OUTCOMMAND_PATH}/out_command_${LOGIN}.$$ 2>&1 |
---|
1369 | status=$? |
---|
1370 | if [ ${status} -gt 0 ] ; then |
---|
1371 | IGCM_debug_Print 2 "IGCM_sys_ncks : error code ${status}" |
---|
1372 | cat ${OUTCOMMAND_PATH}/out_command_${LOGIN}.$$ |
---|
1373 | \rm ${OUTCOMMAND_PATH}/out_command_${LOGIN}.$$ |
---|
1374 | IGCM_debug_Print 2 "IGCM_sys_ncks : ${i}/${NB_ESSAI} sleep ${DELAI} seconds and try again." |
---|
1375 | sleep $DELAI |
---|
1376 | else |
---|
1377 | \rm ${OUTCOMMAND_PATH}/out_command_${LOGIN}.$$ |
---|
1378 | break |
---|
1379 | fi |
---|
1380 | (( i = i + 1 )) |
---|
1381 | done |
---|
1382 | |
---|
1383 | if [ ${status} -gt 0 ] ; then |
---|
1384 | echo "IGCM_sys_ncks : ncks error" |
---|
1385 | IGCM_debug_Exit "ncks" |
---|
1386 | fi |
---|
1387 | |
---|
1388 | IGCM_debug_PopStack "IGCM_sys_ncks" |
---|
1389 | } |
---|
1390 | |
---|
1391 | #D-#================================================== |
---|
1392 | #D-function IGCM_sys_ncpdq |
---|
1393 | #D-* Purpose: encapsulate ncpdq call so as to manage error code and retry |
---|
1394 | #D-* Examples: |
---|
1395 | #D- |
---|
1396 | function IGCM_sys_ncpdq { |
---|
1397 | IGCM_debug_PushStack "IGCM_sys_ncpdq" $@ |
---|
1398 | if ( $DEBUG_sys ) ; then |
---|
1399 | echo "IGCM_sys_ncpdq :" $@ |
---|
1400 | fi |
---|
1401 | |
---|
1402 | typeset NB_ESSAI DELAI status i |
---|
1403 | # number of tentative |
---|
1404 | NB_ESSAI=3 |
---|
1405 | # time delay between tentative |
---|
1406 | DELAI=2 |
---|
1407 | |
---|
1408 | i=0 |
---|
1409 | while [ $i -lt $NB_ESSAI ] ; do |
---|
1410 | ncpdq -C --buffer_size 838860800 $@ > ${OUTCOMMAND_PATH}/out_command_${LOGIN}.$$ 2>&1 |
---|
1411 | status=$? |
---|
1412 | if [ ${status} -gt 0 ] ; then |
---|
1413 | IGCM_debug_Print 2 "IGCM_sys_ncpdq : error code ${status}" |
---|
1414 | cat ${OUTCOMMAND_PATH}/out_command_${LOGIN}.$$ |
---|
1415 | \rm ${OUTCOMMAND_PATH}/out_command_${LOGIN}.$$ |
---|
1416 | IGCM_debug_Print 2 "IGCM_sys_ncpdq : ${i}/${NB_ESSAI} sleep ${DELAI} seconds and try again." |
---|
1417 | sleep $DELAI |
---|
1418 | else |
---|
1419 | \rm ${OUTCOMMAND_PATH}/out_command_${LOGIN}.$$ |
---|
1420 | break |
---|
1421 | fi |
---|
1422 | (( i = i + 1 )) |
---|
1423 | done |
---|
1424 | |
---|
1425 | if [ ${status} -gt 0 ] ; then |
---|
1426 | echo "IGCM_sys_ncpdq : ncpdq error" |
---|
1427 | IGCM_debug_Exit "ncpdq" |
---|
1428 | fi |
---|
1429 | |
---|
1430 | IGCM_debug_PopStack "IGCM_sys_ncpdq" |
---|
1431 | } |
---|
1432 | |
---|
1433 | #D-#================================================== |
---|
1434 | #D-function IGCM_sys_ncra |
---|
1435 | #D-* Purpose: encapsulate ncra call so as to manage error code and retry |
---|
1436 | #D-* Examples: |
---|
1437 | #D- |
---|
1438 | function IGCM_sys_ncra { |
---|
1439 | IGCM_debug_PushStack "IGCM_sys_ncra" $@ |
---|
1440 | if ( $DEBUG_sys ) ; then |
---|
1441 | echo "IGCM_sys_ncra :" $@ |
---|
1442 | fi |
---|
1443 | |
---|
1444 | typeset NB_ESSAI DELAI status i |
---|
1445 | # number of tentative |
---|
1446 | NB_ESSAI=3 |
---|
1447 | # time delay between tentative |
---|
1448 | DELAI=2 |
---|
1449 | |
---|
1450 | i=0 |
---|
1451 | while [ $i -lt $NB_ESSAI ] ; do |
---|
1452 | ncra -C --buffer_size 838860800 $@ > ${OUTCOMMAND_PATH}/out_command_${LOGIN}.$$ 2>&1 |
---|
1453 | status=$? |
---|
1454 | if [ ${status} -gt 0 ] ; then |
---|
1455 | IGCM_debug_Print 2 "IGCM_sys_ncra : error code ${status}" |
---|
1456 | cat ${OUTCOMMAND_PATH}/out_command_${LOGIN}.$$ |
---|
1457 | \rm ${OUTCOMMAND_PATH}/out_command_${LOGIN}.$$ |
---|
1458 | IGCM_debug_Print 2 "IGCM_sys_ncra : ${i}/${NB_ESSAI} sleep ${DELAI} seconds and try again." |
---|
1459 | sleep $DELAI |
---|
1460 | else |
---|
1461 | \rm ${OUTCOMMAND_PATH}/out_command_${LOGIN}.$$ |
---|
1462 | break |
---|
1463 | fi |
---|
1464 | (( i = i + 1 )) |
---|
1465 | done |
---|
1466 | |
---|
1467 | if [ ${status} -gt 0 ] ; then |
---|
1468 | echo "IGCM_sys_ncra : ncra error" |
---|
1469 | IGCM_debug_Exit "ncra" |
---|
1470 | fi |
---|
1471 | |
---|
1472 | IGCM_debug_PopStack "IGCM_sys_ncra" |
---|
1473 | } |
---|
1474 | |
---|
1475 | #D-#================================================== |
---|
1476 | #D-function IGCM_sys_ncrcat |
---|
1477 | #D-* Purpose: encapsulate ncrcat call so as to manage error code and retry |
---|
1478 | #D-* Examples: |
---|
1479 | #D- |
---|
1480 | function IGCM_sys_ncrcat { |
---|
1481 | IGCM_debug_PushStack "IGCM_sys_ncrcat" $@ |
---|
1482 | if ( $DEBUG_sys ) ; then |
---|
1483 | echo "IGCM_sys_ncrcat :" $@ |
---|
1484 | fi |
---|
1485 | |
---|
1486 | typeset NB_ESSAI DELAI status i lastArg |
---|
1487 | # number of tentative |
---|
1488 | NB_ESSAI=3 |
---|
1489 | # time delay between tentative |
---|
1490 | DELAI=2 |
---|
1491 | |
---|
1492 | i=0 |
---|
1493 | while [ $i -lt $NB_ESSAI ] ; do |
---|
1494 | ncrcat -C --buffer_size 838860800 $@ > ${OUTCOMMAND_PATH}/out_command_${LOGIN}.$$ 2>&1 |
---|
1495 | status=$? |
---|
1496 | if [ ${status} -gt 0 ] ; then |
---|
1497 | IGCM_debug_Print 2 "IGCM_sys_ncrcat : error code ${status}" |
---|
1498 | cat ${OUTCOMMAND_PATH}/out_command_${LOGIN}.$$ |
---|
1499 | \rm ${OUTCOMMAND_PATH}/out_command_${LOGIN}.$$ |
---|
1500 | IGCM_debug_Print 2 "IGCM_sys_ncrcat : ${i}/${NB_ESSAI} sleep ${DELAI} seconds and try again." |
---|
1501 | sleep $DELAI |
---|
1502 | elif ( [ ! "X$( grep "WARNING Intra-file non-monotonicity" ${OUTCOMMAND_PATH}/out_command_${LOGIN}.$$ )" = "X" ] && [ X${config_Post_IgnoreNonMonotonic} = XFALSE ] ) ; then |
---|
1503 | IGCM_debug_Print 2 "IGCM_sys_ncrcat : WARNING Intra-file non-monotonicity" |
---|
1504 | cat ${OUTCOMMAND_PATH}/out_command_${LOGIN}.$$ |
---|
1505 | # remove files having corrupted time axis |
---|
1506 | eval lastArg=\${$#} |
---|
1507 | IGCM_debug_Print 2 "Remove files having corrupted time axis" |
---|
1508 | IGCM_debug_Print 2 "IGCM_sys_ncrcat : Delete ${lastArg}" |
---|
1509 | \rm ${lastArg} |
---|
1510 | \rm ${OUTCOMMAND_PATH}/out_command_${LOGIN}.$$ |
---|
1511 | IGCM_debug_Print 2 "IGCM_sys_ncrcat : ${i}/${NB_ESSAI} sleep ${DELAI} seconds and try again." |
---|
1512 | sleep $DELAI |
---|
1513 | else |
---|
1514 | \rm ${OUTCOMMAND_PATH}/out_command_${LOGIN}.$$ |
---|
1515 | break |
---|
1516 | fi |
---|
1517 | (( i = i + 1 )) |
---|
1518 | done |
---|
1519 | |
---|
1520 | # Special case for spinup with cyclic time axis: change attribute calendar to none |
---|
1521 | if [ X${config_Post_IgnoreNonMonotonic} = XTRUE ] ; then |
---|
1522 | eval lastArg=\${$#} |
---|
1523 | echo "IGCM_sys_ncrcat : change attribute calendar to none in file:" ${lastArg} |
---|
1524 | IGCM_sys_ncatted -a calendar,time_counter,m,c,none ${lastArg} |
---|
1525 | fi |
---|
1526 | |
---|
1527 | if [ ${status} -gt 0 ] ; then |
---|
1528 | echo "IGCM_sys_ncrcat : ncrcat error" |
---|
1529 | #IGCM_debug_Exit "ncrcat" |
---|
1530 | fi |
---|
1531 | |
---|
1532 | IGCM_debug_PopStack "IGCM_sys_ncrcat" |
---|
1533 | } |
---|
1534 | |
---|
1535 | #D-#================================================== |
---|
1536 | #D-function IGCM_sys_ncrename |
---|
1537 | #D-* Purpose: encapsulate ncrename call so as to manage error code and retry |
---|
1538 | #D-* Examples: |
---|
1539 | #D- |
---|
1540 | function IGCM_sys_ncrename { |
---|
1541 | IGCM_debug_PushStack "IGCM_sys_ncrename" $@ |
---|
1542 | if ( $DEBUG_sys ) ; then |
---|
1543 | echo "IGCM_sys_ncrename :" $@ |
---|
1544 | fi |
---|
1545 | |
---|
1546 | typeset NB_ESSAI DELAI status i |
---|
1547 | # number of tentative |
---|
1548 | NB_ESSAI=3 |
---|
1549 | # time delay between tentative |
---|
1550 | DELAI=2 |
---|
1551 | |
---|
1552 | i=0 |
---|
1553 | while [ $i -lt $NB_ESSAI ] ; do |
---|
1554 | ncrename $@ > ${OUTCOMMAND_PATH}/out_command_${LOGIN}.$$ 2>&1 |
---|
1555 | status=$? |
---|
1556 | if [ ${status} -gt 0 ] ; then |
---|
1557 | IGCM_debug_Print 2 "IGCM_sys_ncrename : error code ${status}" |
---|
1558 | cat ${OUTCOMMAND_PATH}/out_command_${LOGIN}.$$ |
---|
1559 | \rm ${OUTCOMMAND_PATH}/out_command_${LOGIN}.$$ |
---|
1560 | IGCM_debug_Print 2 "IGCM_sys_ncrename : ${i}/${NB_ESSAI} sleep ${DELAI} seconds and try again." |
---|
1561 | sleep $DELAI |
---|
1562 | else |
---|
1563 | \rm ${OUTCOMMAND_PATH}/out_command_${LOGIN}.$$ |
---|
1564 | break |
---|
1565 | fi |
---|
1566 | (( i = i + 1 )) |
---|
1567 | done |
---|
1568 | |
---|
1569 | if [ ${status} -gt 0 ] ; then |
---|
1570 | echo "IGCM_sys_ncrename : ncrename error" |
---|
1571 | IGCM_debug_Exit "ncrename" |
---|
1572 | fi |
---|
1573 | |
---|
1574 | IGCM_debug_PopStack "IGCM_sys_ncrename" |
---|
1575 | } |
---|
1576 | |
---|
1577 | #D-#================================================== |
---|
1578 | #D-function IGCM_sys_ncwa |
---|
1579 | #D-* Purpose: encapsulate ncwa call so as to manage error code and retry |
---|
1580 | #D-* Examples: |
---|
1581 | #D- |
---|
1582 | function IGCM_sys_ncwa { |
---|
1583 | IGCM_debug_PushStack "IGCM_sys_ncwa" $@ |
---|
1584 | if ( $DEBUG_sys ) ; then |
---|
1585 | echo "IGCM_sys_ncwa :" $@ |
---|
1586 | fi |
---|
1587 | |
---|
1588 | typeset NB_ESSAI DELAI status i |
---|
1589 | # number of tentative |
---|
1590 | NB_ESSAI=3 |
---|
1591 | # time delay between tentative |
---|
1592 | DELAI=2 |
---|
1593 | |
---|
1594 | i=0 |
---|
1595 | while [ $i -lt $NB_ESSAI ] ; do |
---|
1596 | ncwa -C --buffer_size 838860800 $@ > ${OUTCOMMAND_PATH}/out_command_${LOGIN}.$$ 2>&1 |
---|
1597 | status=$? |
---|
1598 | if [ ${status} -gt 0 ] ; then |
---|
1599 | IGCM_debug_Print 2 "IGCM_sys_ncwa : error code ${status}" |
---|
1600 | cat ${OUTCOMMAND_PATH}/out_command_${LOGIN}.$$ |
---|
1601 | \rm ${OUTCOMMAND_PATH}/out_command_${LOGIN}.$$ |
---|
1602 | IGCM_debug_Print 2 "IGCM_sys_ncwa : ${i}/${NB_ESSAI} sleep ${DELAI} seconds and try again." |
---|
1603 | sleep $DELAI |
---|
1604 | else |
---|
1605 | \rm ${OUTCOMMAND_PATH}/out_command_${LOGIN}.$$ |
---|
1606 | break |
---|
1607 | fi |
---|
1608 | (( i = i + 1 )) |
---|
1609 | done |
---|
1610 | |
---|
1611 | if [ ${status} -gt 0 ] ; then |
---|
1612 | echo "IGCM_sys_ncwa : ncwa error" |
---|
1613 | IGCM_debug_Exit "ncwa" |
---|
1614 | fi |
---|
1615 | |
---|
1616 | IGCM_debug_PopStack "IGCM_sys_ncwa" |
---|
1617 | } |
---|
1618 | |
---|
1619 | ############################################################## |
---|
1620 | # CDO OPERATOR |
---|
1621 | |
---|
1622 | #D-#================================================== |
---|
1623 | #D-function IGCM_sys_cdo |
---|
1624 | #D-* Purpose: encapsulate cdo call so as to manage error code and retry |
---|
1625 | #D-* Examples: |
---|
1626 | #D- |
---|
1627 | function IGCM_sys_cdo { |
---|
1628 | IGCM_debug_PushStack "IGCM_sys_cdo" $@ |
---|
1629 | if ( $DEBUG_sys ) ; then |
---|
1630 | echo "IGCM_sys_cdo :" $@ |
---|
1631 | fi |
---|
1632 | |
---|
1633 | typeset status |
---|
1634 | |
---|
1635 | \cdo $@ > ${OUTCOMMAND_PATH}/out_command_${LOGIN}.$$ 2>&1 |
---|
1636 | status=$? |
---|
1637 | if [ ${status} -gt 0 ] ; then |
---|
1638 | echo "IGCM_sys_cdo : error code ${status}" |
---|
1639 | cat ${OUTCOMMAND_PATH}/out_command_${LOGIN}.$$ |
---|
1640 | \rm ${OUTCOMMAND_PATH}/out_command_${LOGIN}.$$ |
---|
1641 | IGCM_debug_PopStack "IGCM_sys_cdo" |
---|
1642 | return 1 |
---|
1643 | else |
---|
1644 | IGCM_debug_PopStack "IGCM_sys_cdo" |
---|
1645 | return 0 |
---|
1646 | fi |
---|
1647 | |
---|
1648 | IGCM_debug_PopStack "IGCM_sys_cdo" |
---|
1649 | } |
---|
1650 | # |
---|
1651 | #D-#================================================== |
---|
1652 | #D-function IGCM_sys_create_run_dir |
---|
1653 | #D-* Purpose: stop the simulation in order to work into the run_dir directory |
---|
1654 | #D-* Examples: |
---|
1655 | #D- |
---|
1656 | function IGCM_sys_create_run_dir { |
---|
1657 | IGCM_debug_PushStack "IGCM_sys_create_run_dir" |
---|
1658 | if ( $DEBUG_sys ) ; then |
---|
1659 | echo "IGCM_sys_create_run_dir :" |
---|
1660 | fi |
---|
1661 | if [ -f ${libIGCM}/Job_debug_${config_UserChoices_JobName} ] ; then |
---|
1662 | |
---|
1663 | CPL_comp=n ; SRF_comp=n ; OCE_comp=n ; CHM_comp=n |
---|
1664 | for comp in ${config_ListOfComponents[*]} ; do |
---|
1665 | [ "X${comp}" = "XCPL" ] && CPL_comp=y |
---|
1666 | [ "X${comp}" = "XSRF" ] && SRF_comp=y |
---|
1667 | [ "X${comp}" = "XOCE" ] && OCE_comp=y |
---|
1668 | [ "X${comp}" = "XCHM" ] && CHM_comp=y |
---|
1669 | eval ExeNameIn=\${config_Executable_${comp}[0]} |
---|
1670 | eval ExeNameOut=\${config_Executable_${comp}[1]} |
---|
1671 | if [ X${ExeNameIn} != X\"\" ] ; then |
---|
1672 | eval ExeNameIn=${ExeNameIn} |
---|
1673 | echo "$ExeNameIn"" ""$ExeNameOut" >> components_binary.txt |
---|
1674 | fi |
---|
1675 | done |
---|
1676 | SUBMIT_DIRECTORY=$(grep SUBMIT_DIR ${libIGCM}/libIGCM_sys/libIGCM_sys_${SYSTEM}.ksh | grep -m1 typeset | cut -dx -f2) |
---|
1677 | sed -e "s%::EXECUTION::%${EXECUTION}%" \ |
---|
1678 | -e "s%::EXECUTION_TYPE::%${executionType}%" \ |
---|
1679 | -e "s%::JOBNAME::%${config_UserChoices_JobName}%" \ |
---|
1680 | -e "s%::SUBMIT_DIR::%${SUBMIT_DIRECTORY}%" \ |
---|
1681 | -e "s%::CPL_comp::%${CPL_comp}%" \ |
---|
1682 | -e "s%::OCE_comp::%${OCE_comp}%" \ |
---|
1683 | -e "s%::SRF_comp::%${SRF_comp}%" \ |
---|
1684 | -e "s%::CHM_comp::%${CHM_comp}%" \ |
---|
1685 | ${libIGCM}/Job_debug_${config_UserChoices_JobName} > ${RUN_DIR}/Job_debug_${config_UserChoices_JobName} |
---|
1686 | cp ${EnvFile} ${RUN_DIR}/. |
---|
1687 | echo |
---|
1688 | echo "############################################" |
---|
1689 | echo "# DEBUG PHASE : CREATION OF RUN_DIR #" |
---|
1690 | echo "############################################" |
---|
1691 | echo |
---|
1692 | echo "You are in development or debug phase" |
---|
1693 | echo "You can run directly into the running directory which is here " |
---|
1694 | echo ${RUN_DIR} |
---|
1695 | echo "Inside the run directory you will find a Job_debug_${config_UserChoices_JobName}" |
---|
1696 | echo "to be used to launch the run as follows :" |
---|
1697 | echo "${SUBMIT} Job_debug_${config_UserChoices_JobName}" |
---|
1698 | exit |
---|
1699 | else |
---|
1700 | echo "############################################" |
---|
1701 | echo "# DEBUG PHASE : CREATION OF RUN_DIR #" |
---|
1702 | echo "############################################" |
---|
1703 | echo |
---|
1704 | echo "You are in development or debug phase" |
---|
1705 | echo "You can run directly into the running directory which is here " |
---|
1706 | echo ${RUN_DIR} |
---|
1707 | exit |
---|
1708 | fi |
---|
1709 | |
---|
1710 | IGCM_debug_PopStack "IGCM_sys_create_run_dir" |
---|
1711 | } |
---|