[771] | 1 | #!/bin/ksh |
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| 2 | |
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| 3 | #************************************************************** |
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| 4 | # Author: Sébastien Denvil |
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| 5 | # Contact: Sebastien.Denvil__at__ipsl.jussieu.fr |
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| 6 | # $Revision:: $ Revision of last commit |
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| 7 | # $Author:: $ Author of last commit |
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| 8 | # $Date:: $ Date of last commit |
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| 9 | # IPSL (2006) |
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| 10 | # This software is governed by the CeCILL licence see libIGCM/libIGCM_CeCILL.LIC |
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| 11 | # |
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| 12 | #************************************************************** |
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| 13 | |
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| 14 | #========================================================= |
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| 15 | # The documentation of this file can be automatically generated |
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| 16 | # if you use the prefix #D- for comments to be extracted. |
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| 17 | # Extract with command: cat lib* | grep "^#D-" | cut -c "4-" |
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| 18 | #========================================================= |
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| 19 | |
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| 20 | #D-#================================================== |
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| 21 | #D-LibIGCM_sys for Ada |
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| 22 | #D-#================================================== |
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| 23 | #D- |
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| 24 | #D- This ksh library if a layer under some usefull |
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| 25 | #D-environment variables and shell commands. |
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| 26 | #D-All those definitions depend on host particularities. |
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| 27 | #D-It manages a stack mechanism and test validity of operations. |
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| 28 | #D-All function described bellow must be prefixed by IGCM_sys. |
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| 29 | |
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| 30 | #==================================================== |
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| 31 | # libIGCM_sys PARAMETERS |
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| 32 | #==================================================== |
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| 33 | |
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| 34 | #==================================================== |
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| 35 | # set DEBUG_sys to true to output calls of function |
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| 36 | typeset -r DEBUG_sys=${DEBUG_sys:=true} |
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| 37 | |
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| 38 | #==================================================== |
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| 39 | # Turn in dry run mode ? (sys_Put_Rest, sys_Put_Out, sys_Get) |
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| 40 | typeset -r DRYRUN=${DRYRUN:=0} |
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| 41 | |
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| 42 | # YOU MUST COMPILE YOUR EXE FILES FOR DRYRUN MODE ! |
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| 43 | # ------------------------------------------------------------------------------------- |
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| 44 | # | DRYRUN= | Date computations, | sys_Get | Exe | sys_Put_Out; sys_Put_Rest | |
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[809] | 45 | # | | Cp/Exe/param/files | | | | |
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| 46 | # | | Chmod Qsub | | | | |
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[771] | 47 | # ------------------------------------------------------------------------------------- |
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| 48 | # | 0 | yes | yes | yes | yes | |
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| 49 | # ------------------------------------------------------------------------------------- |
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| 50 | # | 1 | yes | yes | yes | no | |
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| 51 | # ------------------------------------------------------------------------------------- |
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| 52 | # | 2 | yes | yes | no | no | |
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| 53 | # ------------------------------------------------------------------------------------- |
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| 54 | # | 3 | yes | no | no | no | |
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| 55 | # ------------------------------------------------------------------------------------- |
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| 56 | |
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| 57 | #===================================================== |
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| 58 | # Global Variables : |
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| 59 | #===================================================== |
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| 60 | # Language : "fr" or "en" |
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| 61 | typeset -r MYLANG="fr" |
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| 62 | |
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| 63 | #===================================================== |
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| 64 | # Host and user names |
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| 65 | # $hostname ou hostname |
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[1179] | 66 | typeset HOST=${HOST:=$( hostname )} |
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[771] | 67 | # $username ou whoami |
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[1179] | 68 | typeset LOGIN=${LOGIN:=$( whoami )} |
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[771] | 69 | # $hostname of the MASTER job |
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| 70 | typeset MASTER=ada |
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[1201] | 71 | # project name |
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| 72 | typeset PROJECT=$(echo ${LOADL_STEP_GROUP:=NONE}) |
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| 73 | # jobWarningDelay in seconds |
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[1236] | 74 | typeset jobWarningDelay=$( TZ=utc date -d '1970-01-01 '${wall_clock_limit} +%s ) |
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[771] | 75 | |
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| 76 | #D- |
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| 77 | #D-#================================================== |
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| 78 | #D-Program used in libIGCM |
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| 79 | #D-#================================================== |
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| 80 | |
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| 81 | # Submit command |
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| 82 | typeset SUBMIT=${SUBMIT:=llsubmit} |
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| 83 | # rsync with path |
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| 84 | typeset -r RSYNC=/usr/bin/rsync |
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| 85 | # RSYNC_opt args to rsync |
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| 86 | typeset -r RSYNC_opt="-va" |
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| 87 | # ie storage filesystem |
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[1012] | 88 | typeset -r STOREHOST=ergon |
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[1180] | 89 | typeset -r REMOTE_RSYNC=/usr/bin/rsync |
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[771] | 90 | |
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| 91 | #==================================================== |
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[1180] | 92 | # Set environment tools (ferret, nco, cdo, rebuild, ...) |
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[771] | 93 | #==================================================== |
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[993] | 94 | source /smplocal/pub/Modules/default/init/ksh |
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[1213] | 95 | . /smphome/rech/psl/rpsl035/.atlas_env_ada_intel_2013_0_bash > /dev/null 2>&1 |
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[1210] | 96 | [ ! X${TaskType} = Xchecking ] && IGCM_debug_Print 1 "List of loaded modules:" |
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| 97 | [ ! X${TaskType} = Xchecking ] && module list |
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[1208] | 98 | |
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[993] | 99 | export PATH=${PATH}:/smphome/rech/psl/rpsl035/AddNoise/src_X64_ADA/bin |
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[1026] | 100 | export PATH=${PATH}:/smphome/rech/psl/rpsl035/AddPerturbation/src_X64_ADA/bin |
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[1179] | 101 | export PATH=${PATH}:/smphome/rech/psl/rpsl035/bin/ |
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[771] | 102 | |
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| 103 | #==================================================== |
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| 104 | # Host specific DIRECTORIES |
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| 105 | #==================================================== |
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| 106 | |
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| 107 | #==================================================== |
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| 108 | #- MirrorlibIGCM for frontend |
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| 109 | typeset -r MirrorlibIGCM=${MirrorlibIGCM:=false} |
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| 110 | |
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| 111 | #==================================================== |
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| 112 | #- libIGCM_POST for frontend |
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| 113 | typeset -r libIGCM_POST=${libIGCM} |
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| 114 | |
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| 115 | #==================================================== |
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| 116 | #- R_EXE (==> BIN_DIR = ${MODIPSL}/bin ) |
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| 117 | typeset -r R_EXE="${MODIPSL}/bin" |
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| 118 | |
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| 119 | #==================================================== |
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| 120 | #- SUBMIT_DIR : submission dir |
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[1012] | 121 | typeset -x SUBMIT_DIR=${SUBMIT_DIR:=${LOADL_STEP_INITDIR}} |
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[771] | 122 | |
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| 123 | #==================================================== |
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| 124 | #- IN |
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| 125 | typeset -r R_IN=${R_IN:=/workgpfs/rech/psl/rpsl035/IGCM} |
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| 126 | typeset -r R_IN_ECMWF=${R_IN_ECMWF:=/u/rech/psl/rpsl376} |
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| 127 | |
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| 128 | #==================================================== |
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| 129 | #- RUN_DIR_PATH : Temporary working directory (=> TMP) |
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| 130 | typeset -r RUN_DIR_PATH=${RUN_DIR_PATH:=${TMPDIR}} |
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| 131 | |
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| 132 | #==================================================== |
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[1179] | 133 | #- OUTCOMMAND_PATH : tmp place to store command lines standard error and outputs |
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[1186] | 134 | typeset -r OUTCOMMAND_PATH=${RUN_DIR_PATH:-/tmp} |
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[1179] | 135 | |
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| 136 | #==================================================== |
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[771] | 137 | #- HOST_MPIRUN_COMMAND |
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[791] | 138 | typeset -r HOST_MPIRUN_COMMAND=${HOST_MPIRUN_COMMAND:="/usr/bin/time poe"} |
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[771] | 139 | |
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| 140 | #==================================================== |
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| 141 | #- Max number of arguments passed to nco operator or demigration command |
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| 142 | UNIX_MAX_LIMIT=360 |
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| 143 | |
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| 144 | #==================================================== |
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[1180] | 145 | #- set PackDefault to true on ada |
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[771] | 146 | PackDefault=true |
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| 147 | |
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| 148 | #==================================================== |
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| 149 | #- Default number of MPI task for IPSL coupled model |
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| 150 | #- required for backward compatibility |
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| 151 | #- |
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| 152 | DEFAULT_NUM_PROC_OCE=5 |
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| 153 | DEFAULT_NUM_PROC_CPL=1 |
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| 154 | (( DEFAULT_NUM_PROC_ATM = BATCH_NUM_PROC_TOT - DEFAULT_NUM_PROC_OCE - DEFAULT_NUM_PROC_CPL )) |
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| 155 | |
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| 156 | #D-#================================================== |
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[1057] | 157 | #D-function IGCM_sys_defineArchives |
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| 158 | #D-* Purpose: |
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| 159 | #D-* Define ARCHIVE : Dedicated to large files |
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| 160 | #D-* Define STORAGE : Dedicated to small/medium files |
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| 161 | #D-* Define R_OUT : Output tree located on ARCHIVE |
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| 162 | #D-* Define R_FIG : Output tree located on STORAGE hosting figures (monitoring and atlas, and/or small files) |
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| 163 | #D-* Define R_BUF : Output tree located on SCRATCHDIR hosting files waiting for rebuild or pack processes |
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| 164 | #D-* if SpaceName=TEST everything is stored on WORKDIR |
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[771] | 165 | #D-* Examples: |
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| 166 | #D- |
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[1057] | 167 | function IGCM_sys_defineArchives { |
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| 168 | IGCM_debug_PushStack "IGCM_sys_defineArchives" |
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[771] | 169 | |
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[1060] | 170 | if [ ! X${config_UserChoices_ARCHIVE} = X ]; then |
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[1057] | 171 | #==================================================== |
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| 172 | #- ARCHIVE (dedicated to large files) |
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[1063] | 173 | ARCHIVE=${config_UserChoices_ARCHIVE} |
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[1057] | 174 | else |
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| 175 | #==================================================== |
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| 176 | #- ARCHIVE (dedicated to large files) |
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[1063] | 177 | ARCHIVE=$(echo ${HOME} | sed -e "s,/.*home/,/arch/home/,") |
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[1057] | 178 | fi |
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[771] | 179 | |
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[1060] | 180 | if [ ! X${config_UserChoices_STORAGE} = X ]; then |
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[1057] | 181 | #==================================================== |
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| 182 | #- STORAGE (dedicated to small/medium files) |
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[1063] | 183 | STORAGE=${config_UserChoices_STORAGE} |
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[1057] | 184 | else |
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| 185 | #==================================================== |
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| 186 | #- STORAGE (dedicated to small/medium files) |
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[1063] | 187 | STORAGE=${WORKDIR} |
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[1057] | 188 | fi |
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[771] | 189 | |
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[1057] | 190 | if [ X${config_UserChoices_SpaceName} = XTEST ]; then |
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| 191 | #==================================================== |
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| 192 | #- R_OUT |
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[1063] | 193 | R_OUT=${WORKDIR}/IGCM_OUT |
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[1057] | 194 | |
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| 195 | #==================================================== |
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| 196 | #- R_FIG (hosting figures : monitoring and atlas, and/or small files) |
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[1063] | 197 | R_FIG=${WORKDIR}/IGCM_OUT |
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[1057] | 198 | |
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| 199 | IGCM_debug_Print 1 "SpaceName=TEST ==> OVERRULE destination path directories" |
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| 200 | |
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| 201 | else |
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| 202 | #==================================================== |
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| 203 | #- R_OUT |
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[1063] | 204 | R_OUT=${ARCHIVE}/IGCM_OUT |
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[1057] | 205 | |
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| 206 | #==================================================== |
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| 207 | #- R_FIG (hosting figures : monitoring and atlas, and/or small files) |
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[1063] | 208 | R_FIG=${ARCHIVE}/IGCM_OUT |
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[1057] | 209 | fi |
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| 210 | |
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| 211 | #==================================================== |
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| 212 | #- R_BUF (ONLY FOR double copy an scratch) |
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[1063] | 213 | R_BUF=${WORKDIR}/IGCM_OUT |
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[1057] | 214 | |
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| 215 | IGCM_debug_Print 1 "R_OUT has been defined = ${R_OUT}" |
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| 216 | IGCM_debug_Print 1 "R_BUF has been defined = ${R_BUF}" |
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| 217 | IGCM_debug_Print 1 "R_FIG has been defined = ${R_FIG}" |
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| 218 | |
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| 219 | IGCM_debug_PopStack "IGCM_sys_defineArchives" |
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[771] | 220 | } |
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| 221 | |
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| 222 | #D-#================================================== |
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| 223 | #D-function IGCM_sys_RshArchive |
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| 224 | #D-* Purpose: Archive rsh command |
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| 225 | #D-* Examples: |
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| 226 | #D- |
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| 227 | function IGCM_sys_RshArchive { |
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| 228 | IGCM_debug_PushStack "IGCM_sys_RshArchive" $@ |
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[798] | 229 | DEBUG_sys=false IGCM_sys_IsFileArchived "$@" |
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[1179] | 230 | if [ $? = 0 ] ; then |
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[798] | 231 | rsh ${STOREHOST} exec /bin/ksh <<-EOF |
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[771] | 232 | ${@} |
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| 233 | EOF |
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[798] | 234 | status=$? |
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| 235 | else |
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| 236 | /bin/ksh <<-EOF |
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| 237 | ${@} |
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| 238 | EOF |
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| 239 | status=$? |
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| 240 | fi |
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| 241 | if [ ${status} -gt 0 ] ; then |
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| 242 | IGCM_debug_Print 2 "IGCM_sys_RshArchive : rsh or command failed error code ${status}" |
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[771] | 243 | IGCM_debug_Exit "IGCM_sys_RshArchive" |
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| 244 | fi |
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| 245 | IGCM_debug_PopStack "IGCM_sys_RshArchive" |
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| 246 | } |
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| 247 | |
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| 248 | #D-#================================================== |
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[845] | 249 | #D-function IGCM_sys_RshArchive_NoError |
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| 250 | #D-* Purpose: Archive rsh command, without error |
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| 251 | #D-* used only in monitoring.job |
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| 252 | #D-* Examples: |
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| 253 | #D- |
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| 254 | function IGCM_sys_RshArchive_NoError { |
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| 255 | IGCM_debug_PushStack "IGCM_sys_RshArchive_NoError" $@ |
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| 256 | DEBUG_sys=false IGCM_sys_IsFileArchived "$@" |
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| 257 | if [ $? = 0 ] ; then |
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| 258 | rsh ${STOREHOST} exec /bin/ksh <<-EOF |
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| 259 | ${@} 2> /dev/null |
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| 260 | EOF |
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| 261 | else |
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| 262 | /bin/ksh <<-EOF |
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| 263 | ${@} 2> /dev/null |
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| 264 | EOF |
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| 265 | fi |
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| 266 | IGCM_debug_PopStack "IGCM_sys_RshArchive_NoError" |
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| 267 | } |
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| 268 | |
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| 269 | #D-#================================================== |
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[771] | 270 | #D-function IGCM_sys_MkdirArchive |
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| 271 | #D-* Purpose: Mkdir on Archive |
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| 272 | #D-* Examples: |
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| 273 | #D- |
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| 274 | function IGCM_sys_MkdirArchive { |
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| 275 | IGCM_debug_PushStack "IGCM_sys_MkdirArchive" $@ |
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| 276 | if ( $DEBUG_sys ) ; then |
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| 277 | echo "IGCM_sys_MkdirArchive :" $@ |
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| 278 | fi |
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| 279 | #- creation de repertoire sur le serveur fichier |
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[798] | 280 | DEBUG_sys=false IGCM_sys_IsFileArchived $1 |
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[793] | 281 | if [ $? = 0 ] ; then |
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| 282 | rsh ${STOREHOST} -n mkdir -p $1 |
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[794] | 283 | status=$? |
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[793] | 284 | else |
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| 285 | mkdir -p $1 |
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[794] | 286 | status=$? |
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[922] | 287 | fi |
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[771] | 288 | |
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[794] | 289 | if [ ${status} -gt 0 ] ; then |
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| 290 | IGCM_debug_Print 2 "IGCM_sys_MkdirArchive : rsh or mkdir failed error code ${status}" |
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[771] | 291 | IGCM_debug_Exit "IGCM_sys_MkdirArchive" |
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| 292 | fi |
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| 293 | IGCM_debug_PopStack "IGCM_sys_MkdirArchive" |
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| 294 | } |
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| 295 | |
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| 296 | #D-#================================================== |
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| 297 | #D-function IGCM_sys_TestDirArchive |
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| 298 | #D-* Purpose: Test Directory that must exists on Archive |
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| 299 | #D-* Examples: |
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| 300 | #D- |
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| 301 | function IGCM_sys_TestDirArchive { |
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| 302 | IGCM_debug_PushStack "IGCM_sys_TestDirArchive" $@ |
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| 303 | if ( $DEBUG_sys ) ; then |
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| 304 | echo "IGCM_sys_TestDirArchive :" $@ |
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| 305 | fi |
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[1027] | 306 | typeset ExistFlag |
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[796] | 307 | #Command depends on targeted file system |
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[798] | 308 | DEBUG_sys=false IGCM_sys_IsFileArchived $1 |
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[796] | 309 | if [ $? = 0 ] ; then |
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[1027] | 310 | ExistFlag=$( IGCM_sys_RshArchive "[ -d $1 ] && echo 0 || echo 1" ) |
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[796] | 311 | else |
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[1027] | 312 | ExistFlag=$( [ -d $1 ] && echo 0 || echo 1 ) |
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[796] | 313 | fi |
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[771] | 314 | IGCM_debug_PopStack "IGCM_sys_TestDirArchive" |
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| 315 | return ${ExistFlag} |
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| 316 | } |
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| 317 | |
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| 318 | #D-#================================================== |
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| 319 | #D-function IGCM_sys_IsFileArchived |
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[1012] | 320 | #D-* Purpose: Test file that must NOT EXISTS on Archive based on filename only |
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[771] | 321 | #D-* Examples: |
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| 322 | #D- |
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| 323 | function IGCM_sys_IsFileArchived { |
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| 324 | IGCM_debug_PushStack "IGCM_sys_IsFileArchived" $@ |
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| 325 | if ( $DEBUG_sys ) ; then |
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| 326 | echo "IGCM_sys_IsFileArchived :" $@ |
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| 327 | fi |
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| 328 | typeset IsArchivedFlag |
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[1171] | 329 | IsArchivedFlag=$( [ "X$( echo $@ | grep \/arch\/home )" != "X" ] && echo 0 || echo 1 ) |
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[771] | 330 | IGCM_debug_PopStack "IGCM_sys_IsFileArchived" |
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| 331 | |
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| 332 | return ${IsArchivedFlag} |
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| 333 | } |
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| 334 | |
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| 335 | #D-#================================================== |
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| 336 | #D-function IGCM_sys_TestFileArchive |
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| 337 | #D-* Purpose: Test file that must NOT EXISTS on Archive |
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| 338 | #D-* Examples: |
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| 339 | #D- |
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[1148] | 340 | function IGCM_sys_TestFileArchive { |
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| 341 | IGCM_debug_PushStack "IGCM_sys_TestFileArchive" $@ |
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[1179] | 342 | typeset ExistFlag |
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[1171] | 343 | ExistFlag=$( IGCM_sys_RshArchive "[ -f $1 ] && echo 0 || echo 1" ) |
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[1148] | 344 | IGCM_debug_PopStack "IGCM_sys_TestFileArchive" |
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| 345 | |
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| 346 | return ${ExistFlag} |
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| 347 | } |
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| 348 | |
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| 349 | #D-#================================================== |
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[1179] | 350 | #D-function IGCM_sys_CountFileArchive |
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| 351 | #D-* Purpose: Count files on Archive filesystem |
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| 352 | #D-* Examples: |
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| 353 | #D- |
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[1148] | 354 | function IGCM_sys_CountFileArchive { |
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| 355 | IGCM_debug_PushStack "IGCM_sys_CountFileArchive" $@ |
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| 356 | #Command depends on targeted file system |
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| 357 | DEBUG_sys=false IGCM_sys_IsFileArchived $1 |
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| 358 | if [ $? = 0 ] ; then |
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| 359 | IGCM_sys_RshArchive "ls ${@} 2>/dev/null | wc -l" |
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| 360 | status=$? |
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| 361 | else |
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| 362 | ls ${@} 2>/dev/null | wc -l |
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| 363 | status=$? |
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| 364 | fi |
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| 365 | if [ ${status} -gt 0 ] ; then |
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| 366 | echo "IGCM_sys_CountFileArchive : erreur." |
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| 367 | fi |
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| 368 | IGCM_debug_PopStack "IGCM_sys_CountFileArchive" |
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| 369 | } |
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| 370 | |
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| 371 | #D-#================================================== |
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[771] | 372 | #D-function IGCM_sys_Tree |
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| 373 | #D-* Purpose: Tree directories with files on ${ARCHIVE} |
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| 374 | #D-* Examples: IGCM_sys_Tree ${R_IN} ${R_OUT} |
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| 375 | #D- |
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| 376 | function IGCM_sys_Tree { |
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| 377 | IGCM_debug_PushStack "IGCM_sys_Tree" $@ |
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| 378 | if ( $DEBUG_sys ) ; then |
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| 379 | echo "IGCM_sys_Tree :" $@ |
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| 380 | fi |
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| 381 | |
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[1032] | 382 | \mfls -R $@ |
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[771] | 383 | |
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| 384 | IGCM_debug_PopStack "IGCM_sys_Tree" |
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| 385 | } |
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| 386 | |
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| 387 | #D-#================================================== |
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| 388 | #D-function IGCM_sys_Qsub |
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| 389 | #D-* Purpose: Qsub new job |
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| 390 | #D-* Examples: |
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| 391 | #D- |
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| 392 | function IGCM_sys_Qsub { |
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| 393 | IGCM_debug_PushStack "IGCM_sys_Qsub" $@ |
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| 394 | if ( $DEBUG_sys ) ; then |
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| 395 | echo "IGCM_sys_Qsub :" $@ |
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| 396 | fi |
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[1179] | 397 | typeset status |
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| 398 | |
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[771] | 399 | # We have to change output/error file |
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| 400 | [ ${#@} = 1 ] && REP_FOR_JOB=${SUBMIT_DIR} |
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| 401 | [ ${#@} = 2 ] && REP_FOR_JOB=${2} |
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[774] | 402 | sed -e "s:\# \@ output *= .*:\# \@ output = ${Script_Output}:" \ |
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| 403 | -e "s:\# \@ error *= .*:\# \@ error = ${Script_Output}:" \ |
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| 404 | $1 > ${REP_FOR_JOB}/JOB_FOR_IGCM |
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[1179] | 405 | cd $REP_FOR_JOB ; /usr/bin/llsubmit JOB_FOR_IGCM > ${OUTCOMMAND_PATH}/out_command_${LOGIN}.$$ 2>&1 ; status=$? ; cd - ; |
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[771] | 406 | |
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[1179] | 407 | cat ${OUTCOMMAND_PATH}/out_command_${LOGIN}.$$ |
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[811] | 408 | if [ ${status} -gt 0 ] ; then |
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| 409 | IGCM_debug_Print 2 "IGCM_sys_Qsub $1 : error code ${status}" |
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[771] | 410 | IGCM_debug_Exit "IGCM_sys_Qsub" |
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| 411 | else |
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[1179] | 412 | JobID=$( gawk {'print $4'} ${OUTCOMMAND_PATH}/out_command_${LOGIN}.$$ | tail -1 | sed -e s/\"//g ) |
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[771] | 413 | IGCM_sys_Rm ${REP_FOR_JOB}/JOB_FOR_IGCM |
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| 414 | fi |
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| 415 | IGCM_debug_PopStack "IGCM_sys_Qsub" |
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| 416 | } |
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| 417 | |
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| 418 | #D-#================================================== |
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| 419 | #D-function IGCM_sys_QsubPost |
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| 420 | #D-* Purpose: Qsub new job on scalaire |
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| 421 | #D-* Examples: |
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| 422 | #D- |
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| 423 | function IGCM_sys_QsubPost { |
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| 424 | IGCM_debug_PushStack "IGCM_sys_QsubPost" $@ |
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| 425 | if ( $DEBUG_sys ) ; then |
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| 426 | echo "IGCM_sys_QsubPost :" $@ |
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| 427 | fi |
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[1179] | 428 | typeset status |
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| 429 | |
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[771] | 430 | # We have to change output/error file |
---|
[784] | 431 | [ ${#@} = 1 ] && REP_FOR_JOB=${POST_DIR} |
---|
[771] | 432 | [ ${#@} = 2 ] && REP_FOR_JOB=${2} |
---|
| 433 | |
---|
[784] | 434 | sed -e "s:\# \@ output *= .*:\# \@ output = ${Script_Post_Output}.out:" \ |
---|
| 435 | -e "s:\# \@ error *= .*:\# \@ error = ${Script_Post_Output}.out:" \ |
---|
[887] | 436 | ${libIGCM_POST}/$1.job > ${REP_FOR_JOB}/JOB_FOR_IGCM_$$ |
---|
[774] | 437 | |
---|
[1179] | 438 | cd $REP_FOR_JOB ; /usr/bin/llsubmit JOB_FOR_IGCM_$$ > ${OUTCOMMAND_PATH}/out_command_${LOGIN}.$$ 2>&1 ; status=$? ; cd - ; |
---|
[948] | 439 | |
---|
[1179] | 440 | cat ${OUTCOMMAND_PATH}/out_command_${LOGIN}.$$ |
---|
[811] | 441 | if [ ${status} -gt 0 ] ; then |
---|
| 442 | IGCM_debug_Print 2 "IGCM_sys_QsubPost $1 : error code ${status}" |
---|
[771] | 443 | IGCM_debug_Exit "IGCM_sys_QsubPost" |
---|
| 444 | else |
---|
[1179] | 445 | JobID=$( gawk {'print $4'} ${OUTCOMMAND_PATH}/out_command_${LOGIN}.$$ | tail -1 | sed -e s/\"//g ) |
---|
[887] | 446 | IGCM_sys_Rm ${REP_FOR_JOB}/JOB_FOR_IGCM_$$ |
---|
[771] | 447 | fi |
---|
| 448 | IGCM_debug_PopStack "IGCM_sys_QsubPost" |
---|
| 449 | } |
---|
| 450 | |
---|
| 451 | #D-************************* |
---|
| 452 | #D- File transfer functions |
---|
| 453 | #D-************************* |
---|
| 454 | #D- |
---|
| 455 | |
---|
| 456 | #D-#================================================== |
---|
| 457 | #D-function IGCM_sys_RmRunDir |
---|
| 458 | #D-* Purpose: rm tmpdir (dummy function most of the time batch |
---|
| 459 | #D- scheduler will do the job) |
---|
| 460 | #D-* Examples: |
---|
| 461 | #D- |
---|
| 462 | function IGCM_sys_RmRunDir { |
---|
[1057] | 463 | IGCM_debug_PushStack "IGCM_sys_RmRunDir" $@ |
---|
[771] | 464 | if ( $DEBUG_sys ) ; then |
---|
| 465 | echo "IGCM_sys_RmRunDir :" $@ |
---|
[1183] | 466 | IGCM_debug_Print 1 "Dummy call, let the scheduler do that." |
---|
[771] | 467 | fi |
---|
| 468 | IGCM_debug_PopStack "IGCM_sys_RmRunDir" |
---|
| 469 | } |
---|
| 470 | |
---|
| 471 | #D-#================================================== |
---|
| 472 | #D-function IGCM_sys_Put_Dir |
---|
| 473 | #D-* Purpose: Copy a complete directory on $(ARCHIVE) |
---|
| 474 | #D-* Examples: |
---|
| 475 | #D- |
---|
| 476 | function IGCM_sys_Put_Dir { |
---|
| 477 | IGCM_debug_PushStack "IGCM_sys_Put_Dir" $@ |
---|
| 478 | if ( $DEBUG_sys ) ; then |
---|
| 479 | echo "IGCM_sys_Put_Dir :" $@ |
---|
| 480 | fi |
---|
| 481 | if [ $DRYRUN = 0 ]; then |
---|
| 482 | if [ ! -d ${1} ] ; then |
---|
| 483 | echo "WARNING : IGCM_sys_Put_Dir ${1} DOES NOT EXIST ." |
---|
| 484 | IGCM_debug_PopStack "IGCM_sys_Put_Dir" |
---|
| 485 | return |
---|
| 486 | fi |
---|
| 487 | |
---|
| 488 | typeset status |
---|
| 489 | |
---|
| 490 | # Only if we use rsync |
---|
| 491 | #IGCM_sys_TestDirArchive $( dirname $2 ) |
---|
| 492 | # |
---|
[792] | 493 | #Command depends on targeted file system |
---|
[798] | 494 | DEBUG_sys=false IGCM_sys_IsFileArchived $2 |
---|
[792] | 495 | if [ $? = 0 ] ; then |
---|
[1179] | 496 | \rcp -r $1 ${STOREHOST}:$2 > ${OUTCOMMAND_PATH}/out_command_${LOGIN}.$$ 2>&1 |
---|
[792] | 497 | status=$? |
---|
| 498 | else |
---|
[1179] | 499 | \cp -r $1 $2 > ${OUTCOMMAND_PATH}/out_command_${LOGIN}.$$ 2>&1 |
---|
[792] | 500 | status=$? |
---|
| 501 | fi |
---|
[771] | 502 | |
---|
| 503 | if [ ${status} -gt 0 ] ; then |
---|
[792] | 504 | IGCM_debug_Print 2 "IGCM_sys_Put_Dir : rcp or cp failed error code ${status}" |
---|
[1179] | 505 | cat ${OUTCOMMAND_PATH}/out_command_${LOGIN}.$$ |
---|
[771] | 506 | IGCM_debug_Exit "IGCM_sys_Put_Dir" |
---|
| 507 | else |
---|
[1179] | 508 | \rm ${OUTCOMMAND_PATH}/out_command_${LOGIN}.$$ |
---|
[771] | 509 | fi |
---|
| 510 | fi |
---|
| 511 | IGCM_debug_PopStack "IGCM_sys_Put_Dir" |
---|
| 512 | } |
---|
| 513 | |
---|
| 514 | #D-#================================================== |
---|
| 515 | #D-function IGCM_sys_Get_Dir |
---|
| 516 | #D-* Purpose: Copy a complete directory from ${ARCHIVE} |
---|
| 517 | #D-* Examples: |
---|
| 518 | #D- |
---|
| 519 | function IGCM_sys_Get_Dir { |
---|
| 520 | IGCM_debug_PushStack "IGCM_sys_Get_Dir" $@ |
---|
| 521 | if ( $DEBUG_sys ) ; then |
---|
| 522 | echo "IGCM_sys_Get_Dir :" $@ |
---|
| 523 | fi |
---|
| 524 | if [ $DRYRUN = 0 ]; then |
---|
| 525 | typeset NB_ESSAI DELAI status i |
---|
| 526 | # number of tentative |
---|
| 527 | NB_ESSAI=3 |
---|
| 528 | # time delay between tentative |
---|
| 529 | DELAI=2 |
---|
| 530 | |
---|
| 531 | # Only if we use rsync |
---|
| 532 | #IGCM_sys_TestDirArchive $( dirname $2 ) |
---|
| 533 | # |
---|
[793] | 534 | # Command depends on targeted filesystem |
---|
[798] | 535 | DEBUG_sys=false IGCM_sys_IsFileArchived $1 |
---|
[793] | 536 | if [ $? = 0 ] ; then |
---|
| 537 | # add dmget (to demigrate all offline files) to reduce time of this command : |
---|
[1012] | 538 | #IGCM_sys_RshArchive "dmfind $1 -state MIG -o -state OFL -o -state PAR | dmget -q -n" |
---|
[793] | 539 | i=0 |
---|
| 540 | while [ $i -lt $NB_ESSAI ] ; do |
---|
[1179] | 541 | \rcp -rp ${STOREHOST}:$1 $2 > ${OUTCOMMAND_PATH}/out_command_${LOGIN}.$$ 2>&1 |
---|
[793] | 542 | status=$? |
---|
| 543 | if [ ${status} -gt 0 ]; then |
---|
| 544 | IGCM_debug_Print 2 "IGCM_sys_Get_Dir : rcp failed error code ${status} ${i}/${NB_ESSAI}" |
---|
| 545 | IGCM_debug_Print 2 "IGCM_sys_Get_Dir : sleep ${DELAI} seconds and try again." |
---|
| 546 | sleep $DELAI |
---|
| 547 | else |
---|
| 548 | break |
---|
| 549 | fi |
---|
| 550 | (( i = i + 1 )) |
---|
| 551 | done |
---|
| 552 | else |
---|
[1179] | 553 | \cp -rp $1 $2 > ${OUTCOMMAND_PATH}/out_command_${LOGIN}.$$ 2>&1 |
---|
[771] | 554 | status=$? |
---|
[793] | 555 | if [ ${status} -gt 0 ] ; then |
---|
| 556 | IGCM_debug_Print 2 "IGCM_sys_Get_Dir : cp failed error code ${status}" |
---|
[1179] | 557 | cat ${OUTCOMMAND_PATH}/out_command_${LOGIN}.$$ |
---|
[793] | 558 | IGCM_debug_Exit "IGCM_sys_Get_Dir" |
---|
[771] | 559 | else |
---|
[1179] | 560 | \rm ${OUTCOMMAND_PATH}/out_command_${LOGIN}.$$ |
---|
[771] | 561 | fi |
---|
[793] | 562 | fi |
---|
[771] | 563 | if [ ${status} -gt 0 ] ; then |
---|
[1179] | 564 | IGCM_debug_Print 2 "IGCM_sys_Get_Dir : (r)cp failed error code ${status}" |
---|
| 565 | cat ${OUTCOMMAND_PATH}/out_command_${LOGIN}.$$ |
---|
[771] | 566 | IGCM_debug_Exit "IGCM_sys_Get_Dir" |
---|
| 567 | else |
---|
[1179] | 568 | \rm ${OUTCOMMAND_PATH}/out_command_${LOGIN}.$$ |
---|
[771] | 569 | fi |
---|
| 570 | fi |
---|
| 571 | IGCM_debug_PopStack "IGCM_sys_Get_Dir" |
---|
| 572 | } |
---|
| 573 | |
---|
| 574 | #D-#================================================== |
---|
| 575 | #D-function IGCM_sys_Put_Rest |
---|
| 576 | #D-* Purpose: Put computied restarts on ${ARCHIVE}. |
---|
| 577 | #D- File and target directory must exist. |
---|
| 578 | #D-* Examples: |
---|
| 579 | #D- |
---|
| 580 | function IGCM_sys_Put_Rest { |
---|
| 581 | IGCM_debug_PushStack "IGCM_sys_Put_Rest" $@ |
---|
| 582 | if ( $DEBUG_sys ) ; then |
---|
| 583 | echo "IGCM_sys_Put_Rest :" $@ |
---|
| 584 | fi |
---|
| 585 | if [ $DRYRUN = 0 ]; then |
---|
| 586 | if [ ! -f ${1} ] ; then |
---|
| 587 | echo "ERROR : IGCM_sys_Put_Rest ${1} DOES NOT EXIST ." |
---|
| 588 | IGCM_debug_Exit "IGCM_sys_Put_Rest" |
---|
| 589 | fi |
---|
| 590 | |
---|
| 591 | typeset status |
---|
| 592 | # |
---|
| 593 | if [ X${JobType} = XRUN ] ; then |
---|
| 594 | IGCM_sys_Chmod 444 ${1} |
---|
| 595 | fi |
---|
| 596 | # |
---|
| 597 | # |
---|
[792] | 598 | #Command depends on targeted file system |
---|
[798] | 599 | DEBUG_sys=false IGCM_sys_IsFileArchived $2 |
---|
[792] | 600 | if [ $? = 0 ] ; then |
---|
[1179] | 601 | mfput $1 $2 > ${OUTCOMMAND_PATH}/out_command_${LOGIN}.$$ 2>&1 |
---|
[792] | 602 | status=$? |
---|
| 603 | else |
---|
[795] | 604 | IGCM_sys_MkdirArchive $( dirname $2 ) |
---|
[1179] | 605 | \cp $1 $2 > ${OUTCOMMAND_PATH}/out_command_${LOGIN}.$$ 2>&1 |
---|
[792] | 606 | status=$? |
---|
| 607 | fi |
---|
[771] | 608 | |
---|
| 609 | # #RSYNC WITH NETWORK RSH CALL |
---|
[795] | 610 | # IGCM_sys_MkdirArchive $( dirname $2 ) |
---|
[1179] | 611 | # echo ${RSYNC} ${RSYNC_opt} --rsync-path=${REMOTE_RSYNC} -e rsh ${RUN_DIR}/$1 ${STOREHOST}:${2} > ${OUTCOMMAND_PATH}/out_command_${LOGIN}.$$ 2>&1 |
---|
| 612 | # ${RSYNC} ${RSYNC_opt} --rsync-path=${REMOTE_RSYNC} -e rsh ${RUN_DIR}/$1 ${STOREHOST}:${2} >> ${OUTCOMMAND_PATH}/out_command_${LOGIN}.$$ 2>&1 |
---|
[771] | 613 | |
---|
| 614 | # #RSYNC WITH NFS USE |
---|
[1179] | 615 | # echo ${RSYNC} ${RSYNC_opt} ${RUN_DIR}/$1 ${2} > ${OUTCOMMAND_PATH}/out_command_${LOGIN}.$$ 2>&1 |
---|
| 616 | # ${RSYNC} ${RSYNC_opt} ${RUN_DIR}/$1 ${2} >> ${OUTCOMMAND_PATH}/out_command_${LOGIN}.$$ 2>&1 |
---|
[771] | 617 | |
---|
| 618 | # status=$? |
---|
| 619 | # IGCM_sys_Rsync_out $status |
---|
| 620 | |
---|
[1179] | 621 | # ${libIGCM}/libIGCM_sys/IGCM_analyse_rsync_out.awk ${OUTCOMMAND_PATH}/out_command_${LOGIN}.$$ |
---|
[771] | 622 | # (( status=status+$? )) |
---|
| 623 | |
---|
| 624 | if [ ${status} -gt 0 ] ; then |
---|
[1179] | 625 | IGCM_debug_Print 2 "IGCM_sys_Put_Rest : mfput or cp failed error code ${status}" |
---|
| 626 | cat ${OUTCOMMAND_PATH}/out_command_${LOGIN}.$$ |
---|
[771] | 627 | IGCM_debug_Exit "IGCM_sys_Put_Rest" |
---|
| 628 | else |
---|
[1179] | 629 | \rm ${OUTCOMMAND_PATH}/out_command_${LOGIN}.$$ |
---|
[771] | 630 | fi |
---|
| 631 | fi |
---|
| 632 | IGCM_debug_PopStack "IGCM_sys_Put_Rest" |
---|
| 633 | } |
---|
| 634 | |
---|
| 635 | #D-#================================================== |
---|
| 636 | #D-function IGCM_sys_Put_Out |
---|
| 637 | #D-* Purpose: Copy a file on ${ARCHIVE} after having chmod it in readonly |
---|
| 638 | #D-* Examples: |
---|
| 639 | #D- |
---|
| 640 | function IGCM_sys_Put_Out { |
---|
| 641 | IGCM_debug_PushStack "IGCM_sys_Put_Out" $@ |
---|
| 642 | if ( $DEBUG_sys ) ; then |
---|
| 643 | echo "IGCM_sys_Put_Out :" $@ |
---|
| 644 | fi |
---|
| 645 | |
---|
| 646 | typeset status |
---|
| 647 | |
---|
| 648 | if [ $DRYRUN = 0 ]; then |
---|
| 649 | if [ ! -f ${1} ] ; then |
---|
| 650 | echo "WARNING : IGCM_sys_Put_Out ${1} DOES NOT EXIST ." |
---|
| 651 | IGCM_debug_PopStack "IGCM_sys_Put_Out" |
---|
| 652 | return 1 |
---|
| 653 | fi |
---|
| 654 | # |
---|
| 655 | if [ X${JobType} = XRUN ] ; then |
---|
| 656 | if [ X${3} = X ] ; then |
---|
| 657 | IGCM_sys_Chmod 444 ${1} |
---|
| 658 | fi |
---|
| 659 | fi |
---|
| 660 | # |
---|
| 661 | # |
---|
[792] | 662 | #Command depends on targeted file system |
---|
[798] | 663 | DEBUG_sys=false IGCM_sys_IsFileArchived $2 |
---|
[792] | 664 | if [ $? = 0 ] ; then |
---|
[1179] | 665 | mfput $1 $2 > ${OUTCOMMAND_PATH}/out_command_${LOGIN}.$$ 2>&1 |
---|
[792] | 666 | status=$? |
---|
| 667 | else |
---|
[795] | 668 | IGCM_sys_MkdirArchive $( dirname $2 ) |
---|
[1179] | 669 | \cp $1 $2 > ${OUTCOMMAND_PATH}/out_command_${LOGIN}.$$ 2>&1 |
---|
[792] | 670 | status=$? |
---|
| 671 | fi |
---|
[771] | 672 | |
---|
| 673 | # #RSYNC WITH NETWORK RSH CALL |
---|
[795] | 674 | # IGCM_sys_MkdirArchive $( dirname $2 ) |
---|
[1179] | 675 | # echo ${RSYNC} ${RSYNC_opt} --rsync-path=${REMOTE_RSYNC} -e rsh ${RUN_DIR}/$1 ${STOREHOST}:${2} > ${OUTCOMMAND_PATH}/out_command_${LOGIN}.$$ 2>&1 |
---|
| 676 | # ${RSYNC} ${RSYNC_opt} --rsync-path=${REMOTE_RSYNC} -e rsh ${RUN_DIR}/$1 ${STOREHOST}:${2} >> ${OUTCOMMAND_PATH}/out_command_${LOGIN}.$$ 2>&1 |
---|
[771] | 677 | |
---|
| 678 | # #RSYNC WITH NFS USE |
---|
[1179] | 679 | # echo ${RSYNC} ${RSYNC_opt} ${RUN_DIR}/$1 ${2} > ${OUTCOMMAND_PATH}/out_command_${LOGIN}.$$ 2>&1 |
---|
| 680 | # ${RSYNC} ${RSYNC_opt} ${RUN_DIR}/$1 ${2} >> ${OUTCOMMAND_PATH}/out_command_${LOGIN}.$$ 2>&1 |
---|
[771] | 681 | |
---|
| 682 | # status=$? |
---|
| 683 | # IGCM_sys_Rsync_out $status |
---|
| 684 | |
---|
[1179] | 685 | # ${libIGCM}/libIGCM_sys/IGCM_analyse_rsync_out.awk ${OUTCOMMAND_PATH}/out_command_${LOGIN}.$$ |
---|
[771] | 686 | # (( status=status+$? )) |
---|
| 687 | |
---|
| 688 | if [ ${status} -gt 0 ] ; then |
---|
[792] | 689 | IGCM_debug_Print 2 "IGCM_sys_Put_Out : mfput or cp failed error code ${status}" |
---|
[1179] | 690 | cat ${OUTCOMMAND_PATH}/out_command_${LOGIN}.$$ |
---|
[771] | 691 | IGCM_debug_Exit "IGCM_sys_Put_Out" |
---|
| 692 | else |
---|
[1179] | 693 | \rm ${OUTCOMMAND_PATH}/out_command_${LOGIN}.$$ |
---|
[771] | 694 | fi |
---|
| 695 | fi |
---|
| 696 | IGCM_debug_PopStack "IGCM_sys_Put_Out" |
---|
| 697 | return 0 |
---|
| 698 | } |
---|
| 699 | |
---|
| 700 | #D-#================================================== |
---|
| 701 | #D-function IGCM_sys_Get |
---|
| 702 | #D-* Purpose: Get a file from ${ARCHIVE} |
---|
| 703 | #D-* Examples: IGCM_sys_Get myfile /destpath/myfile_with_PREFIX |
---|
| 704 | #D- IGCM_sys_Get /l Array_contain_myfiles /destpath/ |
---|
| 705 | function IGCM_sys_Get { |
---|
| 706 | IGCM_debug_PushStack "IGCM_sys_Get" $@ |
---|
| 707 | |
---|
| 708 | typeset DEST status dm_liste |
---|
| 709 | |
---|
| 710 | if ( $DEBUG_sys ) ; then |
---|
| 711 | echo "IGCM_sys_Get :" $@ |
---|
| 712 | fi |
---|
| 713 | if [ $DRYRUN -le 2 ]; then |
---|
| 714 | if [ X${1} = X'/l' ] ; then |
---|
| 715 | eval set +A dm_liste \${${2}} |
---|
| 716 | else |
---|
| 717 | dm_liste=${1} |
---|
| 718 | fi |
---|
| 719 | eval DEST=\${${#}} |
---|
| 720 | |
---|
| 721 | # test if the (first) file is present in the old computation : |
---|
[798] | 722 | DEBUG_sys=false IGCM_sys_IsFileArchived ${dm_liste[0]} |
---|
[796] | 723 | if [ $? = 0 ] ; then |
---|
| 724 | IGCM_sys_TestFileArchive ${dm_liste[0]} |
---|
| 725 | status=$? |
---|
| 726 | else |
---|
[798] | 727 | IGCM_sys_TestFileBuffer ${dm_liste[0]} |
---|
[796] | 728 | status=$? |
---|
| 729 | fi |
---|
| 730 | |
---|
[771] | 731 | if [ ${status} -gt 0 ] ; then |
---|
| 732 | echo "IGCM_sys_Get, ERROR : regular file ${dm_liste[0]} DOES NOT EXIST ." |
---|
| 733 | IGCM_debug_Exit "IGCM_sys_Get" |
---|
| 734 | return |
---|
| 735 | fi |
---|
| 736 | |
---|
[792] | 737 | #Command depends on targeted file system |
---|
[798] | 738 | DEBUG_sys=false IGCM_sys_IsFileArchived ${dm_liste[0]} |
---|
[792] | 739 | if [ $? = 0 ] ; then |
---|
[1179] | 740 | mfget ${dm_liste[*]} ${DEST} > ${OUTCOMMAND_PATH}/out_command_${LOGIN}.$$ 2>&1 |
---|
[792] | 741 | status=$? |
---|
| 742 | else |
---|
[1179] | 743 | \cp ${dm_liste[*]} ${DEST} > ${OUTCOMMAND_PATH}/out_command_${LOGIN}.$$ 2>&1 |
---|
[792] | 744 | status=$? |
---|
| 745 | fi |
---|
[771] | 746 | |
---|
| 747 | # #RSYNC WITH NETWORK RSH CALL |
---|
[1179] | 748 | # echo ${RSYNC} ${RSYNC_opt} --rsync-path=${REMOTE_RSYNC} -e rsh ${STOREHOST}:"${dm_liste}" ${STOREHOST}:${RUN_DIR}/${DEST} > ${OUTCOMMAND_PATH}/out_command_${LOGIN}.$$ 2>&1 |
---|
| 749 | # ${RSYNC} ${RSYNC_opt} --rsync-path=${REMOTE_RSYNC} -e rsh ${STOREHOST}:"${dm_liste}" ${STOREHOST}:${RUN_DIR}/${DEST} >> ${OUTCOMMAND_PATH}/out_command_${LOGIN}.$$ 2>&1 |
---|
[771] | 750 | |
---|
| 751 | # #RSYNC WITH NFS USE |
---|
[1179] | 752 | # echo ${RSYNC} ${RSYNC_opt} ${dm_liste} ${RUN_DIR}/${DEST} > ${OUTCOMMAND_PATH}/out_command_${LOGIN}.$$ 2>&1 |
---|
| 753 | # ${RSYNC} ${RSYNC_opt} ${dm_liste} ${RUN_DIR}/${DEST} >> ${OUTCOMMAND_PATH}/out_command_${LOGIN}.$$ 2>&1 |
---|
[771] | 754 | |
---|
| 755 | # status=$? |
---|
| 756 | # IGCM_sys_Rsync_out $status |
---|
| 757 | |
---|
[1179] | 758 | # ${libIGCM}/libIGCM_sys/IGCM_analyse_rsync_out.awk ${OUTCOMMAND_PATH}/out_command_${LOGIN}.$$ |
---|
[771] | 759 | # (( status=status+$? )) |
---|
| 760 | |
---|
| 761 | if [ ${status} -gt 0 ] ; then |
---|
[792] | 762 | IGCM_debug_Print 2 "IGCM_sys_Get : mfget or cp failed error code ${status}" |
---|
[1179] | 763 | cat ${OUTCOMMAND_PATH}/out_command_${LOGIN}.$$ |
---|
[771] | 764 | IGCM_debug_Exit "IGCM_sys_Get" |
---|
| 765 | else |
---|
[1179] | 766 | \rm ${OUTCOMMAND_PATH}/out_command_${LOGIN}.$$ |
---|
[771] | 767 | fi |
---|
| 768 | fi |
---|
| 769 | IGCM_debug_PopStack "IGCM_sys_Get" |
---|
| 770 | } |
---|
| 771 | |
---|
| 772 | #D-#================================================== |
---|
[835] | 773 | #D-function IGCM_sys_GetDate_Monitoring |
---|
| 774 | #D-* Purpose: get the last year for which the monitoring has been computed |
---|
| 775 | #D-* Examples: |
---|
| 776 | #D- |
---|
| 777 | function IGCM_sys_GetDate_Monitoring { |
---|
| 778 | IGCM_debug_PushStack "IGCM_sys_GetDate_Monitoring" $@ |
---|
| 779 | if ( $DEBUG_sys ) ; then |
---|
| 780 | echo "IGCM_sys_GetDate_Monitoring :" $@ |
---|
| 781 | fi |
---|
| 782 | |
---|
| 783 | IGCM_sys_Cd /tmp |
---|
[1129] | 784 | # NASTY HACK. We force /tmp here. This function is called only from the front-end and interactively. |
---|
| 785 | RUN_DIR_PATH=/tmp IGCM_sys_Get ${1} . |
---|
[835] | 786 | eval ${2}=$( cdo showyear $( basename ${1} ) 2> /dev/null | gawk '{ print $NF }' ) |
---|
[1131] | 787 | # Need to erase this file to avoid collision (permission denied getting file) between users on the front-end |
---|
| 788 | IGCM_sys_Rm -f $( basename ${1} ) |
---|
[835] | 789 | IGCM_sys_Cd - |
---|
| 790 | |
---|
| 791 | IGCM_debug_PopStack "IGCM_sys_GetDate_Monitoring" |
---|
| 792 | } |
---|
| 793 | |
---|
| 794 | #D-#================================================== |
---|
[771] | 795 | #D-function IGCM_sys_Put_Dods |
---|
[1179] | 796 | #D-* Purpose: Put ${ARCHIVE} files on DODS internet protocole. |
---|
[771] | 797 | #D-* Examples: |
---|
| 798 | #D- |
---|
| 799 | function IGCM_sys_Put_Dods { |
---|
| 800 | IGCM_debug_PushStack "IGCM_sys_Put_Dods" $@ |
---|
| 801 | if ( $DEBUG_sys ) ; then |
---|
| 802 | echo "IGCM_sys_Put_Dods :" $@ |
---|
| 803 | fi |
---|
[1179] | 804 | typeset status |
---|
[771] | 805 | if [ $DRYRUN = 0 ]; then |
---|
| 806 | # We take our time on that |
---|
| 807 | sleep 10 |
---|
| 808 | IGCM_sys_TestDirArchive ${R_SAVE}/${1} |
---|
| 809 | if [ $? != 0 ] ; then |
---|
| 810 | echo "WARNING : IGCM_sys_Put_Dods ${R_SAVE}/${1} DOES NOT EXIST ." |
---|
| 811 | IGCM_debug_PopStack "IGCM_sys_Put_Dods" |
---|
| 812 | return |
---|
| 813 | fi |
---|
| 814 | |
---|
[1012] | 815 | rsh ${STOREHOST} exec /bin/ksh <<EOF |
---|
[771] | 816 | cd ${R_SAVE} |
---|
[1012] | 817 | /arch/local/bin/dods_rm DODS/pub/${LOGIN}/${R_DODS}/${1} > /dev/null 2>&1 |
---|
[771] | 818 | /bin/chmod -R u+w ${R_SAVE}/${1} |
---|
[1012] | 819 | /arch/local/bin/dods_cp ${1} DODS/pub/${LOGIN}/${R_DODS} > /dev/null 2>&1 |
---|
[771] | 820 | /bin/chmod -R +rX ${R_SAVE}/${1} |
---|
| 821 | /bin/chmod -R u+w ${R_SAVE}/${1} |
---|
| 822 | EOF |
---|
| 823 | status=$? |
---|
| 824 | |
---|
| 825 | if [ ${status} -gt 0 ] ; then |
---|
| 826 | echo "IGCM_sys_Put_Dods : error." |
---|
| 827 | IGCM_debug_Exit "IGCM_sys_Put_Dods" |
---|
| 828 | fi |
---|
| 829 | fi |
---|
| 830 | IGCM_debug_PopStack "IGCM_sys_Put_Dods" |
---|
| 831 | } |
---|
| 832 | |
---|
| 833 | ############################################################## |
---|
| 834 | # REBUILD OPERATOR |
---|
| 835 | |
---|
[811] | 836 | #D-#================================================== |
---|
[1163] | 837 | #D-function IGCM_sys_sync |
---|
| 838 | #D-* Purpose: flush buffer on disk (dummy function on Ada) |
---|
| 839 | #D-* Examples: |
---|
| 840 | #D- |
---|
| 841 | function IGCM_sys_sync { |
---|
| 842 | IGCM_debug_PushStack "IGCM_sys_sync" $@ |
---|
| 843 | if ( $DEBUG_sys ) ; then |
---|
| 844 | echo "IGCM_sys_sync :" $@ |
---|
| 845 | echo "Dummy call, let the system do that." |
---|
| 846 | fi |
---|
| 847 | IGCM_debug_PopStack "IGCM_sys_sync" |
---|
| 848 | } |
---|
| 849 | |
---|
[771] | 850 | ############################################################ |
---|
| 851 | # Activate Running Environnment Variables |
---|
| 852 | |
---|
[811] | 853 | #D-#================================================== |
---|
[1239] | 854 | #D-function IGCM_sys_activ_variables |
---|
[811] | 855 | #D-* Purpose: set environement variables prior to execution |
---|
| 856 | #D-* Examples: |
---|
| 857 | #D- |
---|
[771] | 858 | function IGCM_sys_activ_variables { |
---|
| 859 | IGCM_debug_PushStack "IGCM_sys_activ_variables" |
---|
| 860 | if ( $DEBUG_sys ) ; then |
---|
[811] | 861 | echo "IGCM_sys_activ_variables" |
---|
[771] | 862 | fi |
---|
| 863 | |
---|
[811] | 864 | # -------------------------------------------------------------------- |
---|
| 865 | #D- MPI specifications |
---|
| 866 | # -------------------------------------------------------------------- |
---|
| 867 | |
---|
| 868 | # -------------------------------------------------------------------- |
---|
| 869 | #D- Other specifications |
---|
| 870 | # -------------------------------------------------------------------- |
---|
| 871 | |
---|
[771] | 872 | ulimit -s unlimited |
---|
[1012] | 873 | ## to be done only one time |
---|
| 874 | ## export LD_LIBRARY_PATH=${LD_LIBRARY_PATH}:/smplocal/pub/NetCDF/4.1.3/lib:/smplocal/pub/HDF5/1.8.9/seq/lib |
---|
[1068] | 875 | ## echo ${LD_LIBRARY_PATH} | grep -i netcdf >/dev/null 2>&1 || export LD_LIBRARY_PATH=${LD_LIBRARY_PATH}:/smplocal/pub/NetCDF/4.1.3/lib:/smplocal/pub/HDF5/1.8.9/seq/lib |
---|
[1012] | 876 | IGCM_debug_Print 1 "set LD_LIBRARY_PATH=${LD_LIBRARY_PATH}" |
---|
[771] | 877 | |
---|
[959] | 878 | export MP_STDOUTMODE=combined |
---|
| 879 | IGCM_debug_Print 1 "set MP_STDOUTMODE=${MP_STDOUTMODE}" |
---|
| 880 | |
---|
[1195] | 881 | ## fix to reduce memory usage. Required since 2014/22/04. On ada IDRIS. |
---|
| 882 | #export MP_EUILIBPATH=/smplocal/lib/ibmhpc/pe12012/ppe.pami/gnu/lib64/pami64 |
---|
| 883 | #IGCM_debug_Print 1 "set MP_EUILIBPATH=${MP_EUILIBPATH}" |
---|
[1004] | 884 | |
---|
[771] | 885 | IGCM_debug_PopStack "IGCM_sys_activ_variables" |
---|
| 886 | } |
---|
| 887 | |
---|
| 888 | ############################################################ |
---|
| 889 | # Desactivate Running Environnment Variables |
---|
| 890 | |
---|
[811] | 891 | #D-#================================================== |
---|
| 892 | #D-function IGCM_sys_desactiv_variables |
---|
| 893 | #D-* Purpose: unset environement variables after execution |
---|
| 894 | #D-* Examples: |
---|
| 895 | #D- |
---|
[771] | 896 | function IGCM_sys_desactiv_variables { |
---|
| 897 | IGCM_debug_PushStack "IGCM_sys_desactiv_variables" |
---|
| 898 | if ( $DEBUG_sys ) ; then |
---|
[811] | 899 | echo "IGCM_sys_desactiv_variables" |
---|
[771] | 900 | fi |
---|
| 901 | # -------------------------------------------------------------------- |
---|
| 902 | #D- MPI specifications |
---|
| 903 | # -------------------------------------------------------------------- |
---|
| 904 | |
---|
| 905 | # -------------------------------------------------------------------- |
---|
| 906 | #D- Other specifications |
---|
| 907 | # -------------------------------------------------------------------- |
---|
| 908 | |
---|
| 909 | IGCM_debug_PopStack "IGCM_sys_desactiv_variables" |
---|
| 910 | } |
---|
| 911 | |
---|
| 912 | ############################################################ |
---|
[1238] | 913 | # Update job headers to be used by the scheduler |
---|
| 914 | |
---|
| 915 | #D-#================================================== |
---|
| 916 | #D-function IGCM_sys_updateHeaders |
---|
| 917 | #D-* Purpose: Update job headers to be used by the scheduler |
---|
| 918 | #D-* Examples: IGCM_sys_updateHeaders /path/to/Job_MYEXP |
---|
| 919 | #D- |
---|
| 920 | function IGCM_sys_updateHeaders { |
---|
| 921 | IGCM_debug_PushStack "IGCM_sys_updateHeaders" |
---|
| 922 | if ( $DEBUG_sys ) ; then |
---|
| 923 | echo "IGCM_sys_updateHeaders" |
---|
| 924 | fi |
---|
| 925 | typeset file |
---|
| 926 | file=$1 |
---|
| 927 | |
---|
| 928 | if [ ${executionType} -eq 1 ] ; then |
---|
| 929 | # MPMD + MPI |
---|
| 930 | sed -e "/::openMPthreads::/d" \ |
---|
| 931 | -e "s/::JobNumProcTot::/${coreNumber}/" \ |
---|
| 932 | ${file} > ${file}.tmp |
---|
| 933 | |
---|
| 934 | elif [ ${executionType} -eq 2 ] ; then |
---|
| 935 | # MPMD + MPI + OMP |
---|
| 936 | sed -e "s/::openMPthreads::/${openMPthreads}/" \ |
---|
[1242] | 937 | -e "s/::JobNumProcTot::/${mpiTasks}/" \ |
---|
[1238] | 938 | ${file} > ${file}.tmp |
---|
| 939 | |
---|
| 940 | elif [ ${executionType} -eq 3 ] ; then |
---|
| 941 | # SPMD + MPI/OMP |
---|
| 942 | sed -e "s/::openMPthreads::/${openMPthreads}/" \ |
---|
| 943 | -e "s/::JobNumProcTot::/${mpiTasks}/" \ |
---|
| 944 | ${file} > ${file}.tmp |
---|
| 945 | |
---|
| 946 | elif [ ${executionType} -eq 4 ] ; then |
---|
| 947 | # SPMD + MPI only |
---|
| 948 | sed -e "s/::JobNumProcTot::/${mpiTasks}/" \ |
---|
| 949 | -e "/::openMPthreads::/d" \ |
---|
| 950 | ${file} > ${file}.tmp |
---|
| 951 | |
---|
| 952 | elif [ ${executionType} -eq 5 ] ; then |
---|
| 953 | # SPMD + OMP only |
---|
| 954 | sed -e "s/::openMPthreads::/${openMPthreads}/" \ |
---|
[1240] | 955 | -e "s/@ job_type = parallel/@ job_type = serial/" \ |
---|
[1238] | 956 | -e "/::JobNumProcTot::/d" \ |
---|
| 957 | ${file} > ${file}.tmp |
---|
| 958 | |
---|
| 959 | elif [ ${executionType} -eq 6 ] ; then |
---|
| 960 | # SEQUENTIAL THEN |
---|
| 961 | sed -e "s/::JobNumProcTot::/1/" \ |
---|
[1240] | 962 | -e "s/@ job_type = parallel/@ job_type = serial/" \ |
---|
[1238] | 963 | -e "/::openMPthreads::/d" \ |
---|
| 964 | ${file} > ${file}.tmp |
---|
| 965 | |
---|
| 966 | fi |
---|
| 967 | |
---|
| 968 | IGCM_sys_Mv ${file}.tmp ${file} |
---|
| 969 | |
---|
| 970 | IGCM_debug_PopStack "IGCM_sys_updateHeaders" |
---|
| 971 | } |
---|
| 972 | |
---|
| 973 | ############################################################ |
---|
[771] | 974 | # Build MPI/OMP scripts run file (dummy function) |
---|
| 975 | |
---|
[811] | 976 | #D-#================================================== |
---|
| 977 | #D-function IGCM_sys_build_run_file |
---|
| 978 | #D-* Purpose: build run file (deprecated) |
---|
| 979 | #D-* Examples: |
---|
| 980 | #D- |
---|
[771] | 981 | function IGCM_sys_build_run_file { |
---|
| 982 | |
---|
[811] | 983 | IGCM_debug_Print 3 " dummy function : IGCM_sys_build_run_file " |
---|
[771] | 984 | |
---|
| 985 | } |
---|
| 986 | |
---|
| 987 | ############################################################ |
---|
| 988 | # Build MPI/OMP scripts |
---|
[811] | 989 | |
---|
| 990 | #D-#================================================== |
---|
| 991 | #D-function IGCM_sys_build_execution_scripts |
---|
| 992 | #D-* Purpose: build execution scripts to be launch by ${HOST_MPIRUN_COMMAND} |
---|
| 993 | #D-* Examples: |
---|
| 994 | #D- |
---|
[771] | 995 | function IGCM_sys_build_execution_scripts |
---|
| 996 | { |
---|
| 997 | IGCM_debug_PushStack "IGCM_sys_build_execution_scripts" $@ |
---|
| 998 | if ( $DEBUG_sys ) ; then |
---|
| 999 | echo "IGCM_sys_build_execution_scripts " $@ |
---|
| 1000 | fi |
---|
| 1001 | |
---|
| 1002 | EXECUTION=${HOST_MPIRUN_COMMAND} |
---|
| 1003 | |
---|
[1179] | 1004 | # MPMD mode |
---|
[771] | 1005 | if ( ${OK_PARA_MPMD} ) ; then |
---|
| 1006 | |
---|
| 1007 | if [ -f run_file ] ; then |
---|
| 1008 | IGCM_sys_Rm -f run_file |
---|
| 1009 | fi |
---|
| 1010 | touch run_file |
---|
| 1011 | |
---|
[1179] | 1012 | # Build run_file |
---|
[771] | 1013 | |
---|
[1179] | 1014 | # First loop on the components for the coupler ie oasis (only if oasis3) |
---|
| 1015 | # the coupler ie oasis3 must be the first one |
---|
[771] | 1016 | for comp in ${config_ListOfComponents[*]} ; do |
---|
| 1017 | |
---|
| 1018 | eval ExeNameIn=\${config_Executable_${comp}[0]} |
---|
| 1019 | eval ExeNameOut=\${config_Executable_${comp}[1]} |
---|
| 1020 | |
---|
| 1021 | # for CPL component only |
---|
| 1022 | if [ "X${comp}" = "XCPL" ] ; then |
---|
| 1023 | |
---|
| 1024 | eval comp_proc_mpi_loc=\${${comp}_PROC_MPI} |
---|
| 1025 | eval comp_proc_omp_loc=\${${comp}_PROC_OMP} |
---|
[777] | 1026 | |
---|
| 1027 | if ( ${OK_PARA_MPI} ) ; then |
---|
| 1028 | (( mpi_count = 1 )) |
---|
| 1029 | until [ ${mpi_count} -gt ${comp_proc_mpi_loc} ] ; do |
---|
| 1030 | echo "./${ExeNameOut}" >> run_file |
---|
| 1031 | (( mpi_count = mpi_count + 1 )) |
---|
| 1032 | done |
---|
| 1033 | else |
---|
| 1034 | echo "./${ExeNameOut} " >> run_file |
---|
| 1035 | fi |
---|
[771] | 1036 | fi |
---|
| 1037 | done |
---|
| 1038 | |
---|
[1179] | 1039 | # Then second loop on the components |
---|
[771] | 1040 | for comp in ${config_ListOfComponents[*]} ; do |
---|
| 1041 | |
---|
| 1042 | eval ExeNameIn=\${config_Executable_${comp}[0]} |
---|
| 1043 | eval ExeNameOut=\${config_Executable_${comp}[1]} |
---|
| 1044 | |
---|
| 1045 | # Only if we really have an executable for the component and not the coupler ie oasis: |
---|
| 1046 | if ( [ "X${ExeNameOut}" != X\"\" ] && [ "X${comp}" != "XCPL" ] ) ; then |
---|
| 1047 | |
---|
| 1048 | eval comp_proc_mpi_loc=\${${comp}_PROC_MPI} |
---|
| 1049 | eval comp_proc_omp_loc=\${${comp}_PROC_OMP} |
---|
[777] | 1050 | |
---|
| 1051 | if ( ${OK_PARA_MPI} ) ; then |
---|
| 1052 | (( mpi_count = 1 )) |
---|
| 1053 | until [ ${mpi_count} -gt ${comp_proc_mpi_loc} ] ; do |
---|
[1093] | 1054 | if ( ${OK_PARA_OMP} ) ; then |
---|
| 1055 | # Check if the number of threads is correct |
---|
| 1056 | case ${comp_proc_omp_loc} in |
---|
[1258] | 1057 | 1|2|4) |
---|
[1093] | 1058 | IGCM_debug_Print 1 "You run ${ExeNameOut} on ${comp_proc_omp_loc} OMP threads" |
---|
| 1059 | ;; |
---|
[1258] | 1060 | 8|16) |
---|
[1093] | 1061 | IGCM_debug_Exit "ERROR with OMP parameters !" |
---|
| 1062 | IGCM_debug_Print 2 "Beware : ${comp_proc_omp_loc} is too much for MPMD mode" |
---|
| 1063 | IGCM_debug_Print 2 "You will use more CPU than needed" |
---|
| 1064 | IGCM_debug_Verif_Exit |
---|
| 1065 | ;; |
---|
| 1066 | *) |
---|
| 1067 | IGCM_debug_Exit "ERROR with OMP parameters !" |
---|
| 1068 | IGCM_debug_Print 2 "${comp_proc_omp_loc} is not possible as number of OMP threads" |
---|
| 1069 | IGCM_debug_Print 2 "Only 2,4,8,16 as number of OMP threads are possible " |
---|
| 1070 | IGCM_debug_Verif_Exit |
---|
| 1071 | ;; |
---|
| 1072 | esac |
---|
| 1073 | echo "env OMP_NUM_THREADS=$comp_proc_omp_loc ./${ExeNameOut}" >> run_file |
---|
| 1074 | else |
---|
| 1075 | echo "./${ExeNameOut}" >> run_file |
---|
| 1076 | fi |
---|
| 1077 | (( mpi_count = mpi_count + 1 )) |
---|
[777] | 1078 | done |
---|
| 1079 | else |
---|
[1093] | 1080 | echo "./${ExeNameOut} " >> run_file |
---|
[777] | 1081 | fi |
---|
[1093] | 1082 | if ( ${OK_PARA_OMP} ) ; then |
---|
| 1083 | export KMP_STACKSIZE=200m |
---|
| 1084 | fi |
---|
[771] | 1085 | fi |
---|
| 1086 | done |
---|
| 1087 | |
---|
| 1088 | EXECUTION="${HOST_MPIRUN_COMMAND} -pgmmodel mpmd -cmdfile ./run_file" |
---|
| 1089 | |
---|
| 1090 | IGCM_sys_Chmod u+x run_file |
---|
| 1091 | if ( $DEBUG_sys ) ; then |
---|
| 1092 | echo "run_file contains : " |
---|
| 1093 | cat run_file |
---|
| 1094 | fi |
---|
| 1095 | |
---|
[1180] | 1096 | # Only one executable (SPMD mode). |
---|
| 1097 | else |
---|
[771] | 1098 | |
---|
| 1099 | for comp in ${config_ListOfComponents[*]} ; do |
---|
| 1100 | |
---|
| 1101 | # Only if we really have an executable for the component : |
---|
| 1102 | eval ExeNameOut=\${config_Executable_${comp}[1]} |
---|
| 1103 | if ( [ "X${ExeNameOut}" != X\"\" ] && [ "X${ExeNameOut}" != "Xinca.dat" ] ) ; then |
---|
[847] | 1104 | |
---|
| 1105 | if ( ${OK_PARA_OMP} ) ; then |
---|
| 1106 | eval comp_proc_omp_loc=\${${comp}_PROC_OMP} |
---|
[853] | 1107 | export KMP_STACKSIZE=200m |
---|
| 1108 | #export KMP_LIBRARY=turnaround |
---|
[847] | 1109 | #echo "export KMP_STACKSIZE=3g" >> script_${ExeNameOut}.ksh |
---|
| 1110 | #echo "export KMP_LIBRARY=turnaround" >> script_${ExeNameOut}.ksh |
---|
| 1111 | #echo "export MKL_SERIAL=YES" >> script_${ExeNameOut}.ksh |
---|
| 1112 | fi |
---|
[790] | 1113 | EXECUTION="${HOST_MPIRUN_COMMAND} ./${ExeNameOut}" |
---|
[771] | 1114 | fi |
---|
| 1115 | |
---|
| 1116 | done |
---|
| 1117 | |
---|
| 1118 | fi |
---|
| 1119 | |
---|
| 1120 | IGCM_debug_Print 1 "sys ada : execution command is " |
---|
| 1121 | IGCM_debug_Print 1 "$EXECUTION" |
---|
| 1122 | |
---|
| 1123 | IGCM_debug_PopStack "IGCM_sys_build_execution_scripts" |
---|
| 1124 | } |
---|
| 1125 | |
---|
[933] | 1126 | #D-#================================================== |
---|
| 1127 | #D-function IGCM_sys_check_path |
---|
| 1128 | #D-* Purpose: check that RUN_DIR_PATH that will be removed on some machine |
---|
| 1129 | #D-* do not point to an important use directory. Stop immediately in that case. |
---|
| 1130 | #D-* Examples: |
---|
| 1131 | #D- |
---|
| 1132 | function IGCM_sys_check_path { |
---|
| 1133 | IGCM_debug_PushStack "IGCM_sys_check_path" |
---|
| 1134 | if ( $DEBUG_sys ) ; then |
---|
| 1135 | echo "IGCM_sys_check_path" |
---|
| 1136 | fi |
---|
[811] | 1137 | |
---|
[1012] | 1138 | if ( [ X${RUN_DIR_PATH} = X${HOME} ] || [ X${RUN_DIR_PATH} = X${WORKDIR} ] || [ X${RUN_DIR_PATH} = X${ARCHIVE} ] ) ; then |
---|
[933] | 1139 | IGCM_debug_Print 1 "Variable RUN_DIR_PATH is pointing to an important directory : ${RUN_DIR_PATH}" |
---|
| 1140 | IGCM_debug_Print 1 "Please check the RUN_DIR_PATH definition in your Job : Job_${config_UserChoices_JobName}" |
---|
[936] | 1141 | IGCM_debug_Exit "This will stop the job" |
---|
[933] | 1142 | fi |
---|
| 1143 | IGCM_debug_PopStack "IGCM_sys_check_path" |
---|
| 1144 | } |
---|
| 1145 | |
---|
[811] | 1146 | #D-#================================================== |
---|
| 1147 | #D-function IGCM_sys_check_quota |
---|
| 1148 | #D-* Purpose: check user quota. Stop the simulation if quota above 90% |
---|
| 1149 | #D-* Examples: |
---|
| 1150 | #D- |
---|
[771] | 1151 | function IGCM_sys_check_quota { |
---|
| 1152 | IGCM_debug_PushStack "IGCM_sys_check_quota" |
---|
| 1153 | if ( $DEBUG_sys ) ; then |
---|
[811] | 1154 | echo "IGCM_sys_check_quota" |
---|
[771] | 1155 | fi |
---|
| 1156 | # Limit of quota (in %) |
---|
| 1157 | limit_quota=90 |
---|
[811] | 1158 | |
---|
[771] | 1159 | # Check of the volume |
---|
[945] | 1160 | volume_quota=$(quota_u -w 2>/dev/null| grep 'Quota soft' | gawk '{print $5}') |
---|
[771] | 1161 | if [ ! X${volume_quota} = X ] ; then |
---|
| 1162 | quota_volume=${volume_quota%%\%} |
---|
| 1163 | # echo $quota_volume |
---|
[946] | 1164 | if [ $(echo "${quota_volume} > ${limit_quota}" | bc) -eq 1 ] ; then |
---|
[771] | 1165 | IGCM_debug_Print 1 "Please, check your quota of volume on workgpfs" |
---|
| 1166 | IGCM_debug_Print 1 "${quota_volume}% of your quota is used" |
---|
| 1167 | IGCM_debug_Print 1 "Use the quota_u -w command to check" |
---|
| 1168 | IGCM_debug_Print 1 "You must have more than 10% available to run" |
---|
| 1169 | IGCM_debug_Exit "Not enough space to run ! STOP HERE" |
---|
| 1170 | IGCM_debug_Verif_Exit |
---|
| 1171 | fi |
---|
| 1172 | |
---|
| 1173 | fi |
---|
| 1174 | IGCM_debug_PopStack "IGCM_sys_check_quota" |
---|
| 1175 | } |
---|
| 1176 | |
---|
| 1177 | #D-#================================================== |
---|
[1286] | 1178 | #D-function IGCM_sys_projectAccounting |
---|
| 1179 | #D-* Purpose: store project accounting information in a file |
---|
| 1180 | #D-* Examples: |
---|
| 1181 | #D- |
---|
| 1182 | function IGCM_sys_projectAccounting { |
---|
| 1183 | IGCM_debug_PushStack "IGCM_sys_projectAccounting" |
---|
| 1184 | if ( $DEBUG_sys ) ; then |
---|
| 1185 | echo "IGCM_sys_check_quota" |
---|
| 1186 | fi |
---|
| 1187 | |
---|
| 1188 | cpt > $1 |
---|
| 1189 | |
---|
| 1190 | IGCM_debug_PopStack "IGCM_sys_projectAccounting" |
---|
| 1191 | } |
---|
| 1192 | |
---|
| 1193 | #D-#================================================== |
---|
[1244] | 1194 | #D-function IGCM_sys_getJobSchedulerID |
---|
| 1195 | #D-* Purpose: Get the job ID during execution |
---|
| 1196 | #D-* Examples: IGCM_sys_getJobSchedulerID jobSchedulerID |
---|
| 1197 | #D- |
---|
| 1198 | function IGCM_sys_getJobSchedulerID { |
---|
| 1199 | IGCM_debug_PushStack "IGCM_sys_getJobSchedulerID" |
---|
| 1200 | if ( $DEBUG_sys ) ; then |
---|
| 1201 | echo "IGCM_sys_getJobSchedulerID" |
---|
| 1202 | fi |
---|
| 1203 | |
---|
| 1204 | eval ${1}=$( echo $LOADL_STEP_ID | awk -F. '{print $4}' ) |
---|
| 1205 | |
---|
| 1206 | IGCM_debug_PopStack "IGCM_sys_getJobSchedulerID" |
---|
| 1207 | } |
---|
| 1208 | |
---|
| 1209 | #D-#================================================== |
---|
[958] | 1210 | #D-function IGCM_sys_GetJobID |
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[1244] | 1211 | #D-* Purpose: Get the job ID from the JobName |
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[1179] | 1212 | #D-* Examples: IGCM_sys_GetJobID ${JobName} ${TargetUsr} JobID |
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[958] | 1213 | #D- |
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| 1214 | function IGCM_sys_GetJobID { |
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| 1215 | IGCM_debug_PushStack "IGCM_sys_GetJobID" |
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| 1216 | if ( $DEBUG_sys ) ; then |
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| 1217 | echo "IGCM_sys_GetJobID" |
---|
| 1218 | fi |
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| 1219 | |
---|
| 1220 | # Print only the full (-W) JobID (%id) and JobName (%jn) |
---|
| 1221 | ID=$( llq -u $2 -W -f %id %jn | \ |
---|
| 1222 | gawk -v JobName=$1 '( $NF ~ JobName ) { print $1 }' ) |
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| 1223 | |
---|
| 1224 | eval ${3}=${ID} |
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| 1225 | IGCM_debug_PopStack "IGCM_sys_GetJobID" |
---|
| 1226 | } |
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| 1227 | |
---|
| 1228 | #D-#================================================== |
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[771] | 1229 | #D-function IGCM_sys_CountJobInQueue |
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[1244] | 1230 | #D-* Purpose: Count number of users job |
---|
[771] | 1231 | #D-* Examples: IGCM_sys_CountJobInQueue ${JobName} NbRun |
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| 1232 | #D- |
---|
| 1233 | function IGCM_sys_CountJobInQueue { |
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| 1234 | IGCM_debug_PushStack "IGCM_sys_CountJobInQueue" |
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| 1235 | if ( $DEBUG_sys ) ; then |
---|
| 1236 | echo "IGCM_sys_CountJobInQueue" |
---|
| 1237 | fi |
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| 1238 | |
---|
| 1239 | # Print only the full (-W) JobName (%jn) |
---|
| 1240 | NbRun=$( llq -W -f %jn | grep -c "$1" ) |
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| 1241 | |
---|
| 1242 | eval ${2}=${NbRun} |
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| 1243 | |
---|
| 1244 | IGCM_debug_PopStack "IGCM_sys_CountJobInQueue" |
---|
| 1245 | } |
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| 1246 | |
---|
[955] | 1247 | #D-#================================================== |
---|
| 1248 | #D-function IGCM_sys_ListJobInQueue |
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[1244] | 1249 | #D-* Purpose: Produce a list of users jobs |
---|
[955] | 1250 | #D-* Examples: IGCM_sys_ListJobInQueue ${User} JobNameList |
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| 1251 | #D- |
---|
| 1252 | function IGCM_sys_ListJobInQueue { |
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[1296] | 1253 | IGCM_debug cat ${OUTCOMMAND_PATH}/out_command_${LOGIN}.$$ |
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| 1254 | \rm ${OUTCOMMAND_PATH}/out_command_${LOGIN}.$$ |
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| 1255 | IGCM_debug_PopStack "IGCM_sys_atlas" |
---|
| 1256 | return 1 |
---|
| 1257 | else |
---|
| 1258 | IGCM_debug_PopStack "IGCM_sys_atlas" |
---|
| 1259 | return 0 |
---|
| 1260 | fi |
---|
| 1261 | |
---|
| 1262 | IGCM_debug_PopStack "IGCM_sys_atlas" |
---|
| 1263 | } |
---|
| 1264 | |
---|
| 1265 | _PushStack "IGCM_sys_ListJobInQueue" |
---|
[955] | 1266 | if ( $DEBUG_sys ) ; then |
---|
| 1267 | echo "IGCM_sys_ListJobInQueue" |
---|
| 1268 | fi |
---|
| 1269 | |
---|
[960] | 1270 | # With -W option, column width is as large as necessary |
---|
| 1271 | set -A JobList $( llq -u $1 -W -f %jn | head -n -2 | tail -n +3 | \ |
---|
| 1272 | gawk '( $1 != /TS/ && \ |
---|
| 1273 | $1 !~ /PACK/ && \ |
---|
| 1274 | $1 !~ /REBUILD/ && \ |
---|
| 1275 | $1 !~ /pack/ ) \ |
---|
| 1276 | { print $1 }' | sed -e "s/\(.*\)\.[0-9]*/\1/" ) |
---|
[955] | 1277 | |
---|
| 1278 | eval set -A ${2} ${JobList[*]} |
---|
| 1279 | |
---|
| 1280 | IGCM_debug_PopStack "IGCM_sys_ListJobInQueue" |
---|
| 1281 | } |
---|
[1272] | 1282 | |
---|
| 1283 | #D-#================================================== |
---|
| 1284 | #D-function IGCM_sys_atlas |
---|
| 1285 | #D-* Purpose: encapsulate atlas call so as to manage error code and curie specificity |
---|
| 1286 | #D-* Examples: |
---|
| 1287 | #D- |
---|
| 1288 | function IGCM_sys_atlas { |
---|
| 1289 | IGCM_debug_PushStack "IGCM_sys_atlas" $@ |
---|
| 1290 | if ( $DEBUG_sys ) ; then |
---|
| 1291 | echo "IGCM_sys_atlas :" $@ |
---|
| 1292 | fi |
---|
| 1293 | |
---|
| 1294 | typeset status |
---|
| 1295 | |
---|
| 1296 | \atlas $@ > ${OUTCOMMAND_PATH}/out_command_${LOGIN}.$$ 2>&1 |
---|
| 1297 | status=$? |
---|
| 1298 | if [ ${status} -gt 0 ] ; then |
---|
| 1299 | echo "IGCM_sys_atlas : error code ${status}" |
---|
[1296] | 1300 | |
---|