[771] | 1 | #!/bin/ksh |
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| 2 | |
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| 3 | #************************************************************** |
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| 4 | # Author: Sébastien Denvil |
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| 5 | # Contact: Sebastien.Denvil__at__ipsl.jussieu.fr |
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| 6 | # $Revision:: $ Revision of last commit |
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| 7 | # $Author:: $ Author of last commit |
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| 8 | # $Date:: $ Date of last commit |
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| 9 | # IPSL (2006) |
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| 10 | # This software is governed by the CeCILL licence see libIGCM/libIGCM_CeCILL.LIC |
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| 11 | # |
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| 12 | #************************************************************** |
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| 13 | |
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| 14 | #========================================================= |
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| 15 | # The documentation of this file can be automatically generated |
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| 16 | # if you use the prefix #D- for comments to be extracted. |
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| 17 | # Extract with command: cat lib* | grep "^#D-" | cut -c "4-" |
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| 18 | #========================================================= |
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| 19 | |
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| 20 | #D-#================================================== |
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| 21 | #D-LibIGCM_sys for Ada |
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| 22 | #D-#================================================== |
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| 23 | #D- |
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| 24 | #D- This ksh library if a layer under some usefull |
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| 25 | #D-environment variables and shell commands. |
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| 26 | #D-All those definitions depend on host particularities. |
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| 27 | #D-It manages a stack mechanism and test validity of operations. |
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| 28 | #D-All function described bellow must be prefixed by IGCM_sys. |
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| 29 | |
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| 30 | #==================================================== |
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| 31 | # libIGCM_sys PARAMETERS |
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| 32 | #==================================================== |
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| 33 | |
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| 34 | #==================================================== |
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| 35 | # set DEBUG_sys to true to output calls of function |
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| 36 | typeset -r DEBUG_sys=${DEBUG_sys:=true} |
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| 37 | |
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| 38 | #==================================================== |
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| 39 | # Turn in dry run mode ? (sys_Put_Rest, sys_Put_Out, sys_Get) |
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| 40 | typeset -r DRYRUN=${DRYRUN:=0} |
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| 41 | |
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| 42 | # YOU MUST COMPILE YOUR EXE FILES FOR DRYRUN MODE ! |
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| 43 | # ------------------------------------------------------------------------------------- |
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| 44 | # | DRYRUN= | Date computations, | sys_Get | Exe | sys_Put_Out; sys_Put_Rest | |
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[809] | 45 | # | | Cp/Exe/param/files | | | | |
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| 46 | # | | Chmod Qsub | | | | |
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[771] | 47 | # ------------------------------------------------------------------------------------- |
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| 48 | # | 0 | yes | yes | yes | yes | |
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| 49 | # ------------------------------------------------------------------------------------- |
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| 50 | # | 1 | yes | yes | yes | no | |
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| 51 | # ------------------------------------------------------------------------------------- |
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| 52 | # | 2 | yes | yes | no | no | |
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| 53 | # ------------------------------------------------------------------------------------- |
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| 54 | # | 3 | yes | no | no | no | |
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| 55 | # ------------------------------------------------------------------------------------- |
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| 56 | |
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| 57 | #===================================================== |
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| 58 | # Global Variables : |
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| 59 | #===================================================== |
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| 60 | # Language : "fr" or "en" |
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| 61 | typeset -r MYLANG="fr" |
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| 62 | |
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| 63 | #===================================================== |
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| 64 | # Host and user names |
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| 65 | # $hostname ou hostname |
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[1179] | 66 | typeset HOST=${HOST:=$( hostname )} |
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[771] | 67 | # $username ou whoami |
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[1179] | 68 | typeset LOGIN=${LOGIN:=$( whoami )} |
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[771] | 69 | # $hostname of the MASTER job |
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| 70 | typeset MASTER=ada |
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[1201] | 71 | # project name |
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| 72 | typeset PROJECT=$(echo ${LOADL_STEP_GROUP:=NONE}) |
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| 73 | # jobWarningDelay in seconds |
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[1236] | 74 | typeset jobWarningDelay=$( TZ=utc date -d '1970-01-01 '${wall_clock_limit} +%s ) |
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[771] | 75 | |
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| 76 | #D- |
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| 77 | #D-#================================================== |
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| 78 | #D-Program used in libIGCM |
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| 79 | #D-#================================================== |
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| 80 | |
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| 81 | # Submit command |
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| 82 | typeset SUBMIT=${SUBMIT:=llsubmit} |
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| 83 | # rsync with path |
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| 84 | typeset -r RSYNC=/usr/bin/rsync |
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| 85 | # RSYNC_opt args to rsync |
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| 86 | typeset -r RSYNC_opt="-va" |
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| 87 | # ie storage filesystem |
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[1012] | 88 | typeset -r STOREHOST=ergon |
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[1180] | 89 | typeset -r REMOTE_RSYNC=/usr/bin/rsync |
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[771] | 90 | |
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| 91 | #==================================================== |
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[1485] | 92 | # Access to module command |
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| 93 | #==================================================== |
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| 94 | source /smplocal/pub/Modules/default/init/ksh |
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| 95 | |
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| 96 | #==================================================== |
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[1180] | 97 | # Set environment tools (ferret, nco, cdo, rebuild, ...) |
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[771] | 98 | #==================================================== |
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[1485] | 99 | if [ X${TaskType} = Xcomputing ] ; then |
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| 100 | IGCM_debug_Print 1 "Modules will be loaded later in IGCM_sys_activ_variables." |
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[1305] | 101 | else |
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[1485] | 102 | if ( [ "X${LOADL_STEP_TYPE}" = "XPARALLEL" ] || [ "X${LOADL_STEP_TYPE}" = "XSERIAL" ] ) ; then |
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| 103 | . /smphome/rech/psl/rpsl035/.atlas_env_ada_intel_2013_0_bash > /dev/null 2>&1 |
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| 104 | else |
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| 105 | module unload intel > /dev/null 2>&1 |
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| 106 | module load intel/2016.2 > /dev/null 2>&1 |
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| 107 | . /smphome/rech/psl/rpsl035/.atlas_env_ada_bash > /dev/null 2>&1 |
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| 108 | export PCMDI_MP=/workgpfs/rech/psl/rpsl035/PCMDI-MP |
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| 109 | export UVCDAT_ANONYMOUS_LOG=no |
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| 110 | fi |
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[1305] | 111 | fi |
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[1485] | 112 | |
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| 113 | # Load python |
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| 114 | module load python/2.7.10 > /dev/null 2>&1 |
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| 115 | |
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[1210] | 116 | [ ! X${TaskType} = Xchecking ] && IGCM_debug_Print 1 "List of loaded modules:" |
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| 117 | [ ! X${TaskType} = Xchecking ] && module list |
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[1208] | 118 | |
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[993] | 119 | export PATH=${PATH}:/smphome/rech/psl/rpsl035/AddNoise/src_X64_ADA/bin |
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[1026] | 120 | export PATH=${PATH}:/smphome/rech/psl/rpsl035/AddPerturbation/src_X64_ADA/bin |
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[1179] | 121 | export PATH=${PATH}:/smphome/rech/psl/rpsl035/bin/ |
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[771] | 122 | |
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| 123 | #==================================================== |
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| 124 | # Host specific DIRECTORIES |
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| 125 | #==================================================== |
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| 126 | |
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| 127 | #==================================================== |
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| 128 | #- MirrorlibIGCM for frontend |
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| 129 | typeset -r MirrorlibIGCM=${MirrorlibIGCM:=false} |
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| 130 | |
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| 131 | #==================================================== |
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| 132 | #- libIGCM_POST for frontend |
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| 133 | typeset -r libIGCM_POST=${libIGCM} |
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| 134 | |
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| 135 | #==================================================== |
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| 136 | #- R_EXE (==> BIN_DIR = ${MODIPSL}/bin ) |
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| 137 | typeset -r R_EXE="${MODIPSL}/bin" |
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| 138 | |
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| 139 | #==================================================== |
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| 140 | #- SUBMIT_DIR : submission dir |
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[1012] | 141 | typeset -x SUBMIT_DIR=${SUBMIT_DIR:=${LOADL_STEP_INITDIR}} |
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[771] | 142 | |
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| 143 | #==================================================== |
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| 144 | #- IN |
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| 145 | typeset -r R_IN=${R_IN:=/workgpfs/rech/psl/rpsl035/IGCM} |
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| 146 | |
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| 147 | #==================================================== |
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| 148 | #- RUN_DIR_PATH : Temporary working directory (=> TMP) |
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| 149 | typeset -r RUN_DIR_PATH=${RUN_DIR_PATH:=${TMPDIR}} |
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| 150 | |
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| 151 | #==================================================== |
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[1179] | 152 | #- OUTCOMMAND_PATH : tmp place to store command lines standard error and outputs |
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[1186] | 153 | typeset -r OUTCOMMAND_PATH=${RUN_DIR_PATH:-/tmp} |
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[1179] | 154 | |
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| 155 | #==================================================== |
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[771] | 156 | #- HOST_MPIRUN_COMMAND |
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[1305] | 157 | if ( [ "X${LOADL_STEP_TYPE}" = "XPARALLEL" ] || [ "X${LOADL_STEP_TYPE}" = "XSERIAL" ] ) ; then |
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| 158 | typeset -r HOST_MPIRUN_COMMAND=${HOST_MPIRUN_COMMAND:="/usr/bin/time poe"} |
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| 159 | else |
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| 160 | typeset -r HOST_MPIRUN_COMMAND=${HOST_MPIRUN_COMMAND:="/usr/bin/time mpirun"} |
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| 161 | fi |
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[771] | 162 | #==================================================== |
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| 163 | #- Max number of arguments passed to nco operator or demigration command |
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| 164 | UNIX_MAX_LIMIT=360 |
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| 165 | |
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| 166 | #==================================================== |
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[1180] | 167 | #- set PackDefault to true on ada |
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[771] | 168 | PackDefault=true |
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| 169 | |
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| 170 | #==================================================== |
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[1305] | 171 | #- Number of cores per node |
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| 172 | core_per_node=32 |
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| 173 | |
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| 174 | #==================================================== |
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[771] | 175 | #- Default number of MPI task for IPSL coupled model |
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| 176 | #- required for backward compatibility |
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| 177 | #- |
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| 178 | DEFAULT_NUM_PROC_OCE=5 |
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| 179 | DEFAULT_NUM_PROC_CPL=1 |
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| 180 | (( DEFAULT_NUM_PROC_ATM = BATCH_NUM_PROC_TOT - DEFAULT_NUM_PROC_OCE - DEFAULT_NUM_PROC_CPL )) |
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| 181 | |
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| 182 | #D-#================================================== |
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[1057] | 183 | #D-function IGCM_sys_defineArchives |
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| 184 | #D-* Purpose: |
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| 185 | #D-* Define ARCHIVE : Dedicated to large files |
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| 186 | #D-* Define STORAGE : Dedicated to small/medium files |
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| 187 | #D-* Define R_OUT : Output tree located on ARCHIVE |
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| 188 | #D-* Define R_FIG : Output tree located on STORAGE hosting figures (monitoring and atlas, and/or small files) |
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| 189 | #D-* Define R_BUF : Output tree located on SCRATCHDIR hosting files waiting for rebuild or pack processes |
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| 190 | #D-* if SpaceName=TEST everything is stored on WORKDIR |
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[771] | 191 | #D-* Examples: |
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| 192 | #D- |
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[1057] | 193 | function IGCM_sys_defineArchives { |
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| 194 | IGCM_debug_PushStack "IGCM_sys_defineArchives" |
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[771] | 195 | |
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[1060] | 196 | if [ ! X${config_UserChoices_ARCHIVE} = X ]; then |
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[1057] | 197 | #==================================================== |
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| 198 | #- ARCHIVE (dedicated to large files) |
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[1063] | 199 | ARCHIVE=${config_UserChoices_ARCHIVE} |
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[1057] | 200 | else |
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| 201 | #==================================================== |
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| 202 | #- ARCHIVE (dedicated to large files) |
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[1063] | 203 | ARCHIVE=$(echo ${HOME} | sed -e "s,/.*home/,/arch/home/,") |
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[1057] | 204 | fi |
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[771] | 205 | |
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[1060] | 206 | if [ ! X${config_UserChoices_STORAGE} = X ]; then |
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[1057] | 207 | #==================================================== |
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| 208 | #- STORAGE (dedicated to small/medium files) |
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[1063] | 209 | STORAGE=${config_UserChoices_STORAGE} |
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[1057] | 210 | else |
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| 211 | #==================================================== |
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| 212 | #- STORAGE (dedicated to small/medium files) |
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[1063] | 213 | STORAGE=${WORKDIR} |
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[1057] | 214 | fi |
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[771] | 215 | |
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[1057] | 216 | if [ X${config_UserChoices_SpaceName} = XTEST ]; then |
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| 217 | #==================================================== |
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| 218 | #- R_OUT |
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[1063] | 219 | R_OUT=${WORKDIR}/IGCM_OUT |
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[1057] | 220 | |
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| 221 | #==================================================== |
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| 222 | #- R_FIG (hosting figures : monitoring and atlas, and/or small files) |
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[1063] | 223 | R_FIG=${WORKDIR}/IGCM_OUT |
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[1057] | 224 | |
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| 225 | IGCM_debug_Print 1 "SpaceName=TEST ==> OVERRULE destination path directories" |
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| 226 | |
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| 227 | else |
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| 228 | #==================================================== |
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| 229 | #- R_OUT |
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[1063] | 230 | R_OUT=${ARCHIVE}/IGCM_OUT |
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[1057] | 231 | |
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| 232 | #==================================================== |
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| 233 | #- R_FIG (hosting figures : monitoring and atlas, and/or small files) |
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[1063] | 234 | R_FIG=${ARCHIVE}/IGCM_OUT |
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[1057] | 235 | fi |
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| 236 | |
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| 237 | #==================================================== |
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[1431] | 238 | #- CMIP6 (hosting CMIP6 files produced by XIOS2 and configured by dr2xml) |
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| 239 | CMIP6_BUF=${STORAGE}/IGCM_OUT |
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| 240 | |
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| 241 | #==================================================== |
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[1057] | 242 | #- R_BUF (ONLY FOR double copy an scratch) |
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[1063] | 243 | R_BUF=${WORKDIR}/IGCM_OUT |
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[1057] | 244 | |
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| 245 | IGCM_debug_Print 1 "R_OUT has been defined = ${R_OUT}" |
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| 246 | IGCM_debug_Print 1 "R_BUF has been defined = ${R_BUF}" |
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| 247 | IGCM_debug_Print 1 "R_FIG has been defined = ${R_FIG}" |
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| 248 | |
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| 249 | IGCM_debug_PopStack "IGCM_sys_defineArchives" |
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[771] | 250 | } |
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| 251 | |
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| 252 | #D-#================================================== |
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| 253 | #D-function IGCM_sys_RshArchive |
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| 254 | #D-* Purpose: Archive rsh command |
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| 255 | #D-* Examples: |
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| 256 | #D- |
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| 257 | function IGCM_sys_RshArchive { |
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| 258 | IGCM_debug_PushStack "IGCM_sys_RshArchive" $@ |
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[798] | 259 | DEBUG_sys=false IGCM_sys_IsFileArchived "$@" |
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[1179] | 260 | if [ $? = 0 ] ; then |
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[798] | 261 | rsh ${STOREHOST} exec /bin/ksh <<-EOF |
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[771] | 262 | ${@} |
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| 263 | EOF |
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[798] | 264 | status=$? |
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| 265 | else |
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| 266 | /bin/ksh <<-EOF |
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| 267 | ${@} |
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| 268 | EOF |
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| 269 | status=$? |
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| 270 | fi |
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| 271 | if [ ${status} -gt 0 ] ; then |
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| 272 | IGCM_debug_Print 2 "IGCM_sys_RshArchive : rsh or command failed error code ${status}" |
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[771] | 273 | IGCM_debug_Exit "IGCM_sys_RshArchive" |
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| 274 | fi |
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| 275 | IGCM_debug_PopStack "IGCM_sys_RshArchive" |
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| 276 | } |
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| 277 | |
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| 278 | #D-#================================================== |
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[845] | 279 | #D-function IGCM_sys_RshArchive_NoError |
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| 280 | #D-* Purpose: Archive rsh command, without error |
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| 281 | #D-* used only in monitoring.job |
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| 282 | #D-* Examples: |
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| 283 | #D- |
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| 284 | function IGCM_sys_RshArchive_NoError { |
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| 285 | IGCM_debug_PushStack "IGCM_sys_RshArchive_NoError" $@ |
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| 286 | DEBUG_sys=false IGCM_sys_IsFileArchived "$@" |
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| 287 | if [ $? = 0 ] ; then |
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| 288 | rsh ${STOREHOST} exec /bin/ksh <<-EOF |
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| 289 | ${@} 2> /dev/null |
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| 290 | EOF |
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| 291 | else |
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| 292 | /bin/ksh <<-EOF |
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| 293 | ${@} 2> /dev/null |
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| 294 | EOF |
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| 295 | fi |
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| 296 | IGCM_debug_PopStack "IGCM_sys_RshArchive_NoError" |
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| 297 | } |
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| 298 | |
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| 299 | #D-#================================================== |
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[771] | 300 | #D-function IGCM_sys_MkdirArchive |
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| 301 | #D-* Purpose: Mkdir on Archive |
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| 302 | #D-* Examples: |
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| 303 | #D- |
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| 304 | function IGCM_sys_MkdirArchive { |
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| 305 | IGCM_debug_PushStack "IGCM_sys_MkdirArchive" $@ |
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| 306 | if ( $DEBUG_sys ) ; then |
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| 307 | echo "IGCM_sys_MkdirArchive :" $@ |
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| 308 | fi |
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| 309 | #- creation de repertoire sur le serveur fichier |
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[798] | 310 | DEBUG_sys=false IGCM_sys_IsFileArchived $1 |
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[793] | 311 | if [ $? = 0 ] ; then |
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| 312 | rsh ${STOREHOST} -n mkdir -p $1 |
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[794] | 313 | status=$? |
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[793] | 314 | else |
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| 315 | mkdir -p $1 |
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[794] | 316 | status=$? |
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[922] | 317 | fi |
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[771] | 318 | |
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[794] | 319 | if [ ${status} -gt 0 ] ; then |
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| 320 | IGCM_debug_Print 2 "IGCM_sys_MkdirArchive : rsh or mkdir failed error code ${status}" |
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[771] | 321 | IGCM_debug_Exit "IGCM_sys_MkdirArchive" |
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| 322 | fi |
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| 323 | IGCM_debug_PopStack "IGCM_sys_MkdirArchive" |
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| 324 | } |
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| 325 | |
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| 326 | #D-#================================================== |
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| 327 | #D-function IGCM_sys_TestDirArchive |
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| 328 | #D-* Purpose: Test Directory that must exists on Archive |
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| 329 | #D-* Examples: |
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| 330 | #D- |
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| 331 | function IGCM_sys_TestDirArchive { |
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| 332 | IGCM_debug_PushStack "IGCM_sys_TestDirArchive" $@ |
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| 333 | if ( $DEBUG_sys ) ; then |
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| 334 | echo "IGCM_sys_TestDirArchive :" $@ |
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| 335 | fi |
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[1027] | 336 | typeset ExistFlag |
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[796] | 337 | #Command depends on targeted file system |
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[798] | 338 | DEBUG_sys=false IGCM_sys_IsFileArchived $1 |
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[796] | 339 | if [ $? = 0 ] ; then |
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[1027] | 340 | ExistFlag=$( IGCM_sys_RshArchive "[ -d $1 ] && echo 0 || echo 1" ) |
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[796] | 341 | else |
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[1027] | 342 | ExistFlag=$( [ -d $1 ] && echo 0 || echo 1 ) |
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[796] | 343 | fi |
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[771] | 344 | IGCM_debug_PopStack "IGCM_sys_TestDirArchive" |
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| 345 | return ${ExistFlag} |
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| 346 | } |
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| 347 | |
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| 348 | #D-#================================================== |
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| 349 | #D-function IGCM_sys_IsFileArchived |
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[1012] | 350 | #D-* Purpose: Test file that must NOT EXISTS on Archive based on filename only |
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[771] | 351 | #D-* Examples: |
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| 352 | #D- |
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| 353 | function IGCM_sys_IsFileArchived { |
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| 354 | IGCM_debug_PushStack "IGCM_sys_IsFileArchived" $@ |
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| 355 | if ( $DEBUG_sys ) ; then |
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| 356 | echo "IGCM_sys_IsFileArchived :" $@ |
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| 357 | fi |
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| 358 | typeset IsArchivedFlag |
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[1171] | 359 | IsArchivedFlag=$( [ "X$( echo $@ | grep \/arch\/home )" != "X" ] && echo 0 || echo 1 ) |
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[771] | 360 | IGCM_debug_PopStack "IGCM_sys_IsFileArchived" |
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| 361 | |
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| 362 | return ${IsArchivedFlag} |
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| 363 | } |
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| 364 | |
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| 365 | #D-#================================================== |
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| 366 | #D-function IGCM_sys_TestFileArchive |
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| 367 | #D-* Purpose: Test file that must NOT EXISTS on Archive |
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| 368 | #D-* Examples: |
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| 369 | #D- |
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[1148] | 370 | function IGCM_sys_TestFileArchive { |
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| 371 | IGCM_debug_PushStack "IGCM_sys_TestFileArchive" $@ |
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[1179] | 372 | typeset ExistFlag |
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[1171] | 373 | ExistFlag=$( IGCM_sys_RshArchive "[ -f $1 ] && echo 0 || echo 1" ) |
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[1148] | 374 | IGCM_debug_PopStack "IGCM_sys_TestFileArchive" |
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| 375 | |
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| 376 | return ${ExistFlag} |
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| 377 | } |
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| 378 | |
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| 379 | #D-#================================================== |
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[1179] | 380 | #D-function IGCM_sys_CountFileArchive |
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| 381 | #D-* Purpose: Count files on Archive filesystem |
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| 382 | #D-* Examples: |
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| 383 | #D- |
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[1148] | 384 | function IGCM_sys_CountFileArchive { |
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| 385 | IGCM_debug_PushStack "IGCM_sys_CountFileArchive" $@ |
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| 386 | #Command depends on targeted file system |
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| 387 | DEBUG_sys=false IGCM_sys_IsFileArchived $1 |
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| 388 | if [ $? = 0 ] ; then |
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| 389 | IGCM_sys_RshArchive "ls ${@} 2>/dev/null | wc -l" |
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| 390 | status=$? |
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| 391 | else |
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| 392 | ls ${@} 2>/dev/null | wc -l |
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| 393 | status=$? |
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| 394 | fi |
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| 395 | if [ ${status} -gt 0 ] ; then |
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| 396 | echo "IGCM_sys_CountFileArchive : erreur." |
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| 397 | fi |
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| 398 | IGCM_debug_PopStack "IGCM_sys_CountFileArchive" |
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| 399 | } |
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| 400 | |
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| 401 | #D-#================================================== |
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[771] | 402 | #D-function IGCM_sys_Tree |
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| 403 | #D-* Purpose: Tree directories with files on ${ARCHIVE} |
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| 404 | #D-* Examples: IGCM_sys_Tree ${R_IN} ${R_OUT} |
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| 405 | #D- |
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| 406 | function IGCM_sys_Tree { |
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| 407 | IGCM_debug_PushStack "IGCM_sys_Tree" $@ |
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| 408 | if ( $DEBUG_sys ) ; then |
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| 409 | echo "IGCM_sys_Tree :" $@ |
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| 410 | fi |
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| 411 | |
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[1032] | 412 | \mfls -R $@ |
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[771] | 413 | |
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| 414 | IGCM_debug_PopStack "IGCM_sys_Tree" |
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| 415 | } |
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| 416 | |
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| 417 | #D-#================================================== |
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| 418 | #D-function IGCM_sys_Qsub |
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| 419 | #D-* Purpose: Qsub new job |
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| 420 | #D-* Examples: |
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| 421 | #D- |
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| 422 | function IGCM_sys_Qsub { |
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| 423 | IGCM_debug_PushStack "IGCM_sys_Qsub" $@ |
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| 424 | if ( $DEBUG_sys ) ; then |
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| 425 | echo "IGCM_sys_Qsub :" $@ |
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| 426 | fi |
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[1179] | 427 | typeset status |
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| 428 | |
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[771] | 429 | # We have to change output/error file |
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| 430 | [ ${#@} = 1 ] && REP_FOR_JOB=${SUBMIT_DIR} |
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| 431 | [ ${#@} = 2 ] && REP_FOR_JOB=${2} |
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[774] | 432 | sed -e "s:\# \@ output *= .*:\# \@ output = ${Script_Output}:" \ |
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[1305] | 433 | -e "s:\# \@ error *= .*:\# \@ error = ${Script_Output}:" \ |
---|
| 434 | $1 > ${REP_FOR_JOB}/JOB_FOR_IGCM |
---|
[1179] | 435 | cd $REP_FOR_JOB ; /usr/bin/llsubmit JOB_FOR_IGCM > ${OUTCOMMAND_PATH}/out_command_${LOGIN}.$$ 2>&1 ; status=$? ; cd - ; |
---|
[771] | 436 | |
---|
[1179] | 437 | cat ${OUTCOMMAND_PATH}/out_command_${LOGIN}.$$ |
---|
[811] | 438 | if [ ${status} -gt 0 ] ; then |
---|
| 439 | IGCM_debug_Print 2 "IGCM_sys_Qsub $1 : error code ${status}" |
---|
[771] | 440 | IGCM_debug_Exit "IGCM_sys_Qsub" |
---|
| 441 | else |
---|
[1179] | 442 | JobID=$( gawk {'print $4'} ${OUTCOMMAND_PATH}/out_command_${LOGIN}.$$ | tail -1 | sed -e s/\"//g ) |
---|
[771] | 443 | IGCM_sys_Rm ${REP_FOR_JOB}/JOB_FOR_IGCM |
---|
| 444 | fi |
---|
| 445 | IGCM_debug_PopStack "IGCM_sys_Qsub" |
---|
| 446 | } |
---|
| 447 | |
---|
| 448 | #D-#================================================== |
---|
| 449 | #D-function IGCM_sys_QsubPost |
---|
| 450 | #D-* Purpose: Qsub new job on scalaire |
---|
| 451 | #D-* Examples: |
---|
| 452 | #D- |
---|
| 453 | function IGCM_sys_QsubPost { |
---|
| 454 | IGCM_debug_PushStack "IGCM_sys_QsubPost" $@ |
---|
| 455 | if ( $DEBUG_sys ) ; then |
---|
| 456 | echo "IGCM_sys_QsubPost :" $@ |
---|
| 457 | fi |
---|
[1179] | 458 | typeset status |
---|
| 459 | |
---|
[771] | 460 | # We have to change output/error file |
---|
[784] | 461 | [ ${#@} = 1 ] && REP_FOR_JOB=${POST_DIR} |
---|
[771] | 462 | [ ${#@} = 2 ] && REP_FOR_JOB=${2} |
---|
| 463 | |
---|
[784] | 464 | sed -e "s:\# \@ output *= .*:\# \@ output = ${Script_Post_Output}.out:" \ |
---|
[1305] | 465 | -e "s:\# \@ error *= .*:\# \@ error = ${Script_Post_Output}.out:" \ |
---|
| 466 | ${libIGCM_POST}/$1.job > ${REP_FOR_JOB}/JOB_FOR_IGCM_$$ |
---|
[774] | 467 | |
---|
[1179] | 468 | cd $REP_FOR_JOB ; /usr/bin/llsubmit JOB_FOR_IGCM_$$ > ${OUTCOMMAND_PATH}/out_command_${LOGIN}.$$ 2>&1 ; status=$? ; cd - ; |
---|
[948] | 469 | |
---|
[1179] | 470 | cat ${OUTCOMMAND_PATH}/out_command_${LOGIN}.$$ |
---|
[811] | 471 | if [ ${status} -gt 0 ] ; then |
---|
| 472 | IGCM_debug_Print 2 "IGCM_sys_QsubPost $1 : error code ${status}" |
---|
[771] | 473 | IGCM_debug_Exit "IGCM_sys_QsubPost" |
---|
| 474 | else |
---|
[1179] | 475 | JobID=$( gawk {'print $4'} ${OUTCOMMAND_PATH}/out_command_${LOGIN}.$$ | tail -1 | sed -e s/\"//g ) |
---|
[887] | 476 | IGCM_sys_Rm ${REP_FOR_JOB}/JOB_FOR_IGCM_$$ |
---|
[771] | 477 | fi |
---|
| 478 | IGCM_debug_PopStack "IGCM_sys_QsubPost" |
---|
| 479 | } |
---|
| 480 | |
---|
| 481 | #D-************************* |
---|
| 482 | #D- File transfer functions |
---|
| 483 | #D-************************* |
---|
| 484 | #D- |
---|
| 485 | |
---|
| 486 | #D-#================================================== |
---|
| 487 | #D-function IGCM_sys_RmRunDir |
---|
| 488 | #D-* Purpose: rm tmpdir (dummy function most of the time batch |
---|
| 489 | #D- scheduler will do the job) |
---|
| 490 | #D-* Examples: |
---|
| 491 | #D- |
---|
| 492 | function IGCM_sys_RmRunDir { |
---|
[1057] | 493 | IGCM_debug_PushStack "IGCM_sys_RmRunDir" $@ |
---|
[771] | 494 | if ( $DEBUG_sys ) ; then |
---|
| 495 | echo "IGCM_sys_RmRunDir :" $@ |
---|
[1183] | 496 | IGCM_debug_Print 1 "Dummy call, let the scheduler do that." |
---|
[771] | 497 | fi |
---|
| 498 | IGCM_debug_PopStack "IGCM_sys_RmRunDir" |
---|
| 499 | } |
---|
| 500 | |
---|
| 501 | #D-#================================================== |
---|
| 502 | #D-function IGCM_sys_Put_Dir |
---|
| 503 | #D-* Purpose: Copy a complete directory on $(ARCHIVE) |
---|
| 504 | #D-* Examples: |
---|
| 505 | #D- |
---|
| 506 | function IGCM_sys_Put_Dir { |
---|
| 507 | IGCM_debug_PushStack "IGCM_sys_Put_Dir" $@ |
---|
| 508 | if ( $DEBUG_sys ) ; then |
---|
| 509 | echo "IGCM_sys_Put_Dir :" $@ |
---|
| 510 | fi |
---|
| 511 | if [ $DRYRUN = 0 ]; then |
---|
| 512 | if [ ! -d ${1} ] ; then |
---|
| 513 | echo "WARNING : IGCM_sys_Put_Dir ${1} DOES NOT EXIST ." |
---|
| 514 | IGCM_debug_PopStack "IGCM_sys_Put_Dir" |
---|
| 515 | return |
---|
| 516 | fi |
---|
| 517 | |
---|
| 518 | typeset status |
---|
| 519 | |
---|
| 520 | # Only if we use rsync |
---|
| 521 | #IGCM_sys_TestDirArchive $( dirname $2 ) |
---|
| 522 | # |
---|
[792] | 523 | #Command depends on targeted file system |
---|
[798] | 524 | DEBUG_sys=false IGCM_sys_IsFileArchived $2 |
---|
[792] | 525 | if [ $? = 0 ] ; then |
---|
[1179] | 526 | \rcp -r $1 ${STOREHOST}:$2 > ${OUTCOMMAND_PATH}/out_command_${LOGIN}.$$ 2>&1 |
---|
[792] | 527 | status=$? |
---|
| 528 | else |
---|
[1179] | 529 | \cp -r $1 $2 > ${OUTCOMMAND_PATH}/out_command_${LOGIN}.$$ 2>&1 |
---|
[792] | 530 | status=$? |
---|
| 531 | fi |
---|
[771] | 532 | |
---|
| 533 | if [ ${status} -gt 0 ] ; then |
---|
[792] | 534 | IGCM_debug_Print 2 "IGCM_sys_Put_Dir : rcp or cp failed error code ${status}" |
---|
[1179] | 535 | cat ${OUTCOMMAND_PATH}/out_command_${LOGIN}.$$ |
---|
[771] | 536 | IGCM_debug_Exit "IGCM_sys_Put_Dir" |
---|
| 537 | else |
---|
[1179] | 538 | \rm ${OUTCOMMAND_PATH}/out_command_${LOGIN}.$$ |
---|
[771] | 539 | fi |
---|
| 540 | fi |
---|
| 541 | IGCM_debug_PopStack "IGCM_sys_Put_Dir" |
---|
| 542 | } |
---|
| 543 | |
---|
| 544 | #D-#================================================== |
---|
| 545 | #D-function IGCM_sys_Get_Dir |
---|
| 546 | #D-* Purpose: Copy a complete directory from ${ARCHIVE} |
---|
| 547 | #D-* Examples: |
---|
| 548 | #D- |
---|
| 549 | function IGCM_sys_Get_Dir { |
---|
| 550 | IGCM_debug_PushStack "IGCM_sys_Get_Dir" $@ |
---|
| 551 | if ( $DEBUG_sys ) ; then |
---|
| 552 | echo "IGCM_sys_Get_Dir :" $@ |
---|
| 553 | fi |
---|
| 554 | if [ $DRYRUN = 0 ]; then |
---|
| 555 | typeset NB_ESSAI DELAI status i |
---|
| 556 | # number of tentative |
---|
| 557 | NB_ESSAI=3 |
---|
| 558 | # time delay between tentative |
---|
| 559 | DELAI=2 |
---|
| 560 | |
---|
| 561 | # Only if we use rsync |
---|
| 562 | #IGCM_sys_TestDirArchive $( dirname $2 ) |
---|
| 563 | # |
---|
[793] | 564 | # Command depends on targeted filesystem |
---|
[798] | 565 | DEBUG_sys=false IGCM_sys_IsFileArchived $1 |
---|
[793] | 566 | if [ $? = 0 ] ; then |
---|
| 567 | # add dmget (to demigrate all offline files) to reduce time of this command : |
---|
[1012] | 568 | #IGCM_sys_RshArchive "dmfind $1 -state MIG -o -state OFL -o -state PAR | dmget -q -n" |
---|
[793] | 569 | i=0 |
---|
| 570 | while [ $i -lt $NB_ESSAI ] ; do |
---|
[1179] | 571 | \rcp -rp ${STOREHOST}:$1 $2 > ${OUTCOMMAND_PATH}/out_command_${LOGIN}.$$ 2>&1 |
---|
[793] | 572 | status=$? |
---|
| 573 | if [ ${status} -gt 0 ]; then |
---|
| 574 | IGCM_debug_Print 2 "IGCM_sys_Get_Dir : rcp failed error code ${status} ${i}/${NB_ESSAI}" |
---|
| 575 | IGCM_debug_Print 2 "IGCM_sys_Get_Dir : sleep ${DELAI} seconds and try again." |
---|
| 576 | sleep $DELAI |
---|
| 577 | else |
---|
| 578 | break |
---|
| 579 | fi |
---|
| 580 | (( i = i + 1 )) |
---|
| 581 | done |
---|
| 582 | else |
---|
[1179] | 583 | \cp -rp $1 $2 > ${OUTCOMMAND_PATH}/out_command_${LOGIN}.$$ 2>&1 |
---|
[771] | 584 | status=$? |
---|
[793] | 585 | if [ ${status} -gt 0 ] ; then |
---|
| 586 | IGCM_debug_Print 2 "IGCM_sys_Get_Dir : cp failed error code ${status}" |
---|
[1179] | 587 | cat ${OUTCOMMAND_PATH}/out_command_${LOGIN}.$$ |
---|
[793] | 588 | IGCM_debug_Exit "IGCM_sys_Get_Dir" |
---|
[771] | 589 | else |
---|
[1179] | 590 | \rm ${OUTCOMMAND_PATH}/out_command_${LOGIN}.$$ |
---|
[771] | 591 | fi |
---|
[793] | 592 | fi |
---|
[771] | 593 | if [ ${status} -gt 0 ] ; then |
---|
[1179] | 594 | IGCM_debug_Print 2 "IGCM_sys_Get_Dir : (r)cp failed error code ${status}" |
---|
| 595 | cat ${OUTCOMMAND_PATH}/out_command_${LOGIN}.$$ |
---|
[771] | 596 | IGCM_debug_Exit "IGCM_sys_Get_Dir" |
---|
| 597 | else |
---|
[1179] | 598 | \rm ${OUTCOMMAND_PATH}/out_command_${LOGIN}.$$ |
---|
[771] | 599 | fi |
---|
| 600 | fi |
---|
| 601 | IGCM_debug_PopStack "IGCM_sys_Get_Dir" |
---|
| 602 | } |
---|
| 603 | |
---|
| 604 | #D-#================================================== |
---|
| 605 | #D-function IGCM_sys_Put_Rest |
---|
| 606 | #D-* Purpose: Put computied restarts on ${ARCHIVE}. |
---|
| 607 | #D- File and target directory must exist. |
---|
| 608 | #D-* Examples: |
---|
| 609 | #D- |
---|
| 610 | function IGCM_sys_Put_Rest { |
---|
| 611 | IGCM_debug_PushStack "IGCM_sys_Put_Rest" $@ |
---|
| 612 | if ( $DEBUG_sys ) ; then |
---|
| 613 | echo "IGCM_sys_Put_Rest :" $@ |
---|
| 614 | fi |
---|
| 615 | if [ $DRYRUN = 0 ]; then |
---|
| 616 | if [ ! -f ${1} ] ; then |
---|
| 617 | echo "ERROR : IGCM_sys_Put_Rest ${1} DOES NOT EXIST ." |
---|
| 618 | IGCM_debug_Exit "IGCM_sys_Put_Rest" |
---|
| 619 | fi |
---|
| 620 | |
---|
| 621 | typeset status |
---|
| 622 | # |
---|
| 623 | if [ X${JobType} = XRUN ] ; then |
---|
| 624 | IGCM_sys_Chmod 444 ${1} |
---|
| 625 | fi |
---|
| 626 | # |
---|
| 627 | # |
---|
[792] | 628 | #Command depends on targeted file system |
---|
[798] | 629 | DEBUG_sys=false IGCM_sys_IsFileArchived $2 |
---|
[792] | 630 | if [ $? = 0 ] ; then |
---|
[1179] | 631 | mfput $1 $2 > ${OUTCOMMAND_PATH}/out_command_${LOGIN}.$$ 2>&1 |
---|
[792] | 632 | status=$? |
---|
| 633 | else |
---|
[795] | 634 | IGCM_sys_MkdirArchive $( dirname $2 ) |
---|
[1179] | 635 | \cp $1 $2 > ${OUTCOMMAND_PATH}/out_command_${LOGIN}.$$ 2>&1 |
---|
[792] | 636 | status=$? |
---|
| 637 | fi |
---|
[771] | 638 | |
---|
| 639 | # #RSYNC WITH NETWORK RSH CALL |
---|
[795] | 640 | # IGCM_sys_MkdirArchive $( dirname $2 ) |
---|
[1179] | 641 | # echo ${RSYNC} ${RSYNC_opt} --rsync-path=${REMOTE_RSYNC} -e rsh ${RUN_DIR}/$1 ${STOREHOST}:${2} > ${OUTCOMMAND_PATH}/out_command_${LOGIN}.$$ 2>&1 |
---|
| 642 | # ${RSYNC} ${RSYNC_opt} --rsync-path=${REMOTE_RSYNC} -e rsh ${RUN_DIR}/$1 ${STOREHOST}:${2} >> ${OUTCOMMAND_PATH}/out_command_${LOGIN}.$$ 2>&1 |
---|
[771] | 643 | |
---|
| 644 | # #RSYNC WITH NFS USE |
---|
[1179] | 645 | # echo ${RSYNC} ${RSYNC_opt} ${RUN_DIR}/$1 ${2} > ${OUTCOMMAND_PATH}/out_command_${LOGIN}.$$ 2>&1 |
---|
| 646 | # ${RSYNC} ${RSYNC_opt} ${RUN_DIR}/$1 ${2} >> ${OUTCOMMAND_PATH}/out_command_${LOGIN}.$$ 2>&1 |
---|
[771] | 647 | |
---|
| 648 | # status=$? |
---|
| 649 | # IGCM_sys_Rsync_out $status |
---|
| 650 | |
---|
[1179] | 651 | # ${libIGCM}/libIGCM_sys/IGCM_analyse_rsync_out.awk ${OUTCOMMAND_PATH}/out_command_${LOGIN}.$$ |
---|
[771] | 652 | # (( status=status+$? )) |
---|
| 653 | |
---|
| 654 | if [ ${status} -gt 0 ] ; then |
---|
[1179] | 655 | IGCM_debug_Print 2 "IGCM_sys_Put_Rest : mfput or cp failed error code ${status}" |
---|
| 656 | cat ${OUTCOMMAND_PATH}/out_command_${LOGIN}.$$ |
---|
[771] | 657 | IGCM_debug_Exit "IGCM_sys_Put_Rest" |
---|
| 658 | else |
---|
[1179] | 659 | \rm ${OUTCOMMAND_PATH}/out_command_${LOGIN}.$$ |
---|
[771] | 660 | fi |
---|
| 661 | fi |
---|
| 662 | IGCM_debug_PopStack "IGCM_sys_Put_Rest" |
---|
| 663 | } |
---|
| 664 | |
---|
| 665 | #D-#================================================== |
---|
| 666 | #D-function IGCM_sys_Put_Out |
---|
| 667 | #D-* Purpose: Copy a file on ${ARCHIVE} after having chmod it in readonly |
---|
| 668 | #D-* Examples: |
---|
| 669 | #D- |
---|
| 670 | function IGCM_sys_Put_Out { |
---|
| 671 | IGCM_debug_PushStack "IGCM_sys_Put_Out" $@ |
---|
| 672 | if ( $DEBUG_sys ) ; then |
---|
| 673 | echo "IGCM_sys_Put_Out :" $@ |
---|
| 674 | fi |
---|
| 675 | |
---|
| 676 | typeset status |
---|
| 677 | |
---|
| 678 | if [ $DRYRUN = 0 ]; then |
---|
| 679 | if [ ! -f ${1} ] ; then |
---|
| 680 | echo "WARNING : IGCM_sys_Put_Out ${1} DOES NOT EXIST ." |
---|
| 681 | IGCM_debug_PopStack "IGCM_sys_Put_Out" |
---|
| 682 | return 1 |
---|
| 683 | fi |
---|
| 684 | # |
---|
| 685 | if [ X${JobType} = XRUN ] ; then |
---|
| 686 | if [ X${3} = X ] ; then |
---|
| 687 | IGCM_sys_Chmod 444 ${1} |
---|
| 688 | fi |
---|
| 689 | fi |
---|
| 690 | # |
---|
| 691 | # |
---|
[792] | 692 | #Command depends on targeted file system |
---|
[798] | 693 | DEBUG_sys=false IGCM_sys_IsFileArchived $2 |
---|
[792] | 694 | if [ $? = 0 ] ; then |
---|
[1179] | 695 | mfput $1 $2 > ${OUTCOMMAND_PATH}/out_command_${LOGIN}.$$ 2>&1 |
---|
[792] | 696 | status=$? |
---|
| 697 | else |
---|
[795] | 698 | IGCM_sys_MkdirArchive $( dirname $2 ) |
---|
[1179] | 699 | \cp $1 $2 > ${OUTCOMMAND_PATH}/out_command_${LOGIN}.$$ 2>&1 |
---|
[792] | 700 | status=$? |
---|
| 701 | fi |
---|
[771] | 702 | |
---|
| 703 | # #RSYNC WITH NETWORK RSH CALL |
---|
[795] | 704 | # IGCM_sys_MkdirArchive $( dirname $2 ) |
---|
[1179] | 705 | # echo ${RSYNC} ${RSYNC_opt} --rsync-path=${REMOTE_RSYNC} -e rsh ${RUN_DIR}/$1 ${STOREHOST}:${2} > ${OUTCOMMAND_PATH}/out_command_${LOGIN}.$$ 2>&1 |
---|
| 706 | # ${RSYNC} ${RSYNC_opt} --rsync-path=${REMOTE_RSYNC} -e rsh ${RUN_DIR}/$1 ${STOREHOST}:${2} >> ${OUTCOMMAND_PATH}/out_command_${LOGIN}.$$ 2>&1 |
---|
[771] | 707 | |
---|
| 708 | # #RSYNC WITH NFS USE |
---|
[1179] | 709 | # echo ${RSYNC} ${RSYNC_opt} ${RUN_DIR}/$1 ${2} > ${OUTCOMMAND_PATH}/out_command_${LOGIN}.$$ 2>&1 |
---|
| 710 | # ${RSYNC} ${RSYNC_opt} ${RUN_DIR}/$1 ${2} >> ${OUTCOMMAND_PATH}/out_command_${LOGIN}.$$ 2>&1 |
---|
[771] | 711 | |
---|
| 712 | # status=$? |
---|
| 713 | # IGCM_sys_Rsync_out $status |
---|
| 714 | |
---|
[1179] | 715 | # ${libIGCM}/libIGCM_sys/IGCM_analyse_rsync_out.awk ${OUTCOMMAND_PATH}/out_command_${LOGIN}.$$ |
---|
[771] | 716 | # (( status=status+$? )) |
---|
| 717 | |
---|
| 718 | if [ ${status} -gt 0 ] ; then |
---|
[792] | 719 | IGCM_debug_Print 2 "IGCM_sys_Put_Out : mfput or cp failed error code ${status}" |
---|
[1179] | 720 | cat ${OUTCOMMAND_PATH}/out_command_${LOGIN}.$$ |
---|
[771] | 721 | IGCM_debug_Exit "IGCM_sys_Put_Out" |
---|
| 722 | else |
---|
[1179] | 723 | \rm ${OUTCOMMAND_PATH}/out_command_${LOGIN}.$$ |
---|
[771] | 724 | fi |
---|
| 725 | fi |
---|
| 726 | IGCM_debug_PopStack "IGCM_sys_Put_Out" |
---|
| 727 | return 0 |
---|
| 728 | } |
---|
| 729 | |
---|
| 730 | #D-#================================================== |
---|
| 731 | #D-function IGCM_sys_Get |
---|
| 732 | #D-* Purpose: Get a file from ${ARCHIVE} |
---|
| 733 | #D-* Examples: IGCM_sys_Get myfile /destpath/myfile_with_PREFIX |
---|
| 734 | #D- IGCM_sys_Get /l Array_contain_myfiles /destpath/ |
---|
| 735 | function IGCM_sys_Get { |
---|
| 736 | IGCM_debug_PushStack "IGCM_sys_Get" $@ |
---|
| 737 | |
---|
| 738 | typeset DEST status dm_liste |
---|
| 739 | |
---|
| 740 | if ( $DEBUG_sys ) ; then |
---|
| 741 | echo "IGCM_sys_Get :" $@ |
---|
| 742 | fi |
---|
| 743 | if [ $DRYRUN -le 2 ]; then |
---|
| 744 | if [ X${1} = X'/l' ] ; then |
---|
| 745 | eval set +A dm_liste \${${2}} |
---|
| 746 | else |
---|
| 747 | dm_liste=${1} |
---|
| 748 | fi |
---|
| 749 | eval DEST=\${${#}} |
---|
| 750 | |
---|
| 751 | # test if the (first) file is present in the old computation : |
---|
[798] | 752 | DEBUG_sys=false IGCM_sys_IsFileArchived ${dm_liste[0]} |
---|
[796] | 753 | if [ $? = 0 ] ; then |
---|
| 754 | IGCM_sys_TestFileArchive ${dm_liste[0]} |
---|
| 755 | status=$? |
---|
| 756 | else |
---|
[798] | 757 | IGCM_sys_TestFileBuffer ${dm_liste[0]} |
---|
[796] | 758 | status=$? |
---|
| 759 | fi |
---|
| 760 | |
---|
[771] | 761 | if [ ${status} -gt 0 ] ; then |
---|
| 762 | echo "IGCM_sys_Get, ERROR : regular file ${dm_liste[0]} DOES NOT EXIST ." |
---|
| 763 | IGCM_debug_Exit "IGCM_sys_Get" |
---|
| 764 | return |
---|
| 765 | fi |
---|
| 766 | |
---|
[792] | 767 | #Command depends on targeted file system |
---|
[798] | 768 | DEBUG_sys=false IGCM_sys_IsFileArchived ${dm_liste[0]} |
---|
[792] | 769 | if [ $? = 0 ] ; then |
---|
[1179] | 770 | mfget ${dm_liste[*]} ${DEST} > ${OUTCOMMAND_PATH}/out_command_${LOGIN}.$$ 2>&1 |
---|
[792] | 771 | status=$? |
---|
| 772 | else |
---|
[1179] | 773 | \cp ${dm_liste[*]} ${DEST} > ${OUTCOMMAND_PATH}/out_command_${LOGIN}.$$ 2>&1 |
---|
[792] | 774 | status=$? |
---|
| 775 | fi |
---|
[771] | 776 | |
---|
| 777 | # #RSYNC WITH NETWORK RSH CALL |
---|
[1179] | 778 | # echo ${RSYNC} ${RSYNC_opt} --rsync-path=${REMOTE_RSYNC} -e rsh ${STOREHOST}:"${dm_liste}" ${STOREHOST}:${RUN_DIR}/${DEST} > ${OUTCOMMAND_PATH}/out_command_${LOGIN}.$$ 2>&1 |
---|
| 779 | # ${RSYNC} ${RSYNC_opt} --rsync-path=${REMOTE_RSYNC} -e rsh ${STOREHOST}:"${dm_liste}" ${STOREHOST}:${RUN_DIR}/${DEST} >> ${OUTCOMMAND_PATH}/out_command_${LOGIN}.$$ 2>&1 |
---|
[771] | 780 | |
---|
| 781 | # #RSYNC WITH NFS USE |
---|
[1179] | 782 | # echo ${RSYNC} ${RSYNC_opt} ${dm_liste} ${RUN_DIR}/${DEST} > ${OUTCOMMAND_PATH}/out_command_${LOGIN}.$$ 2>&1 |
---|
| 783 | # ${RSYNC} ${RSYNC_opt} ${dm_liste} ${RUN_DIR}/${DEST} >> ${OUTCOMMAND_PATH}/out_command_${LOGIN}.$$ 2>&1 |
---|
[771] | 784 | |
---|
| 785 | # status=$? |
---|
| 786 | # IGCM_sys_Rsync_out $status |
---|
| 787 | |
---|
[1179] | 788 | # ${libIGCM}/libIGCM_sys/IGCM_analyse_rsync_out.awk ${OUTCOMMAND_PATH}/out_command_${LOGIN}.$$ |
---|
[771] | 789 | # (( status=status+$? )) |
---|
| 790 | |
---|
| 791 | if [ ${status} -gt 0 ] ; then |
---|
[792] | 792 | IGCM_debug_Print 2 "IGCM_sys_Get : mfget or cp failed error code ${status}" |
---|
[1179] | 793 | cat ${OUTCOMMAND_PATH}/out_command_${LOGIN}.$$ |
---|
[771] | 794 | IGCM_debug_Exit "IGCM_sys_Get" |
---|
| 795 | else |
---|
[1179] | 796 | \rm ${OUTCOMMAND_PATH}/out_command_${LOGIN}.$$ |
---|
[771] | 797 | fi |
---|
| 798 | fi |
---|
| 799 | IGCM_debug_PopStack "IGCM_sys_Get" |
---|
| 800 | } |
---|
| 801 | |
---|
| 802 | #D-#================================================== |
---|
[835] | 803 | #D-function IGCM_sys_GetDate_Monitoring |
---|
| 804 | #D-* Purpose: get the last year for which the monitoring has been computed |
---|
| 805 | #D-* Examples: |
---|
| 806 | #D- |
---|
| 807 | function IGCM_sys_GetDate_Monitoring { |
---|
| 808 | IGCM_debug_PushStack "IGCM_sys_GetDate_Monitoring" $@ |
---|
| 809 | if ( $DEBUG_sys ) ; then |
---|
| 810 | echo "IGCM_sys_GetDate_Monitoring :" $@ |
---|
| 811 | fi |
---|
| 812 | |
---|
| 813 | IGCM_sys_Cd /tmp |
---|
[1129] | 814 | # NASTY HACK. We force /tmp here. This function is called only from the front-end and interactively. |
---|
| 815 | RUN_DIR_PATH=/tmp IGCM_sys_Get ${1} . |
---|
[835] | 816 | eval ${2}=$( cdo showyear $( basename ${1} ) 2> /dev/null | gawk '{ print $NF }' ) |
---|
[1131] | 817 | # Need to erase this file to avoid collision (permission denied getting file) between users on the front-end |
---|
| 818 | IGCM_sys_Rm -f $( basename ${1} ) |
---|
[835] | 819 | IGCM_sys_Cd - |
---|
| 820 | |
---|
| 821 | IGCM_debug_PopStack "IGCM_sys_GetDate_Monitoring" |
---|
| 822 | } |
---|
| 823 | |
---|
| 824 | #D-#================================================== |
---|
[1392] | 825 | #D-function IGCM_sys_Dods_Rm |
---|
| 826 | #D-* Purpose: DO NOTHING ! Put ${ARCHIVE} files on DODS internet protocole. |
---|
| 827 | #D-* Examples: |
---|
| 828 | #D- |
---|
| 829 | function IGCM_sys_Dods_Rm { |
---|
| 830 | if ( $DEBUG_sys ) ; then |
---|
| 831 | echo "IGCM_sys_Dods_Rm :" $@ |
---|
| 832 | fi |
---|
| 833 | |
---|
| 834 | typeset status |
---|
| 835 | if [ $DRYRUN = 0 ]; then |
---|
| 836 | if [ "$#" -eq 1 ]; then |
---|
| 837 | rsh ${STOREHOST} exec /bin/ksh <<EOF |
---|
| 838 | cd ${R_SAVE} |
---|
| 839 | /arch/local/bin/dods_rm DODS/pub/${LOGIN}/${R_DODS}/${1} > /dev/null 2>&1 |
---|
| 840 | EOF |
---|
| 841 | status=$? |
---|
| 842 | else |
---|
| 843 | rsh ${STOREHOST} exec /bin/ksh <<EOF |
---|
| 844 | cd ${R_SAVE} |
---|
| 845 | /arch/local/bin/dods_rm DODS/pub/${LOGIN}/${R_DODS} > /dev/null 2>&1 |
---|
| 846 | EOF |
---|
| 847 | status=$? |
---|
| 848 | fi |
---|
| 849 | fi |
---|
| 850 | |
---|
| 851 | return ${status} |
---|
| 852 | } |
---|
| 853 | |
---|
| 854 | #D-#================================================== |
---|
| 855 | #D-function IGCM_sys_Dods_Cp |
---|
| 856 | #D-* Purpose: Copy $(ARCHIVE) files on DODS internet protocole. |
---|
| 857 | #D-* Examples: |
---|
| 858 | #D- |
---|
| 859 | function IGCM_sys_Dods_Cp { |
---|
| 860 | if ( $DEBUG_sys ) ; then |
---|
| 861 | echo "IGCM_sys_Dods_Cp :" $@ |
---|
| 862 | fi |
---|
| 863 | return 0 |
---|
| 864 | } |
---|
| 865 | |
---|
| 866 | #D-#================================================== |
---|
[771] | 867 | #D-function IGCM_sys_Put_Dods |
---|
[1179] | 868 | #D-* Purpose: Put ${ARCHIVE} files on DODS internet protocole. |
---|
[771] | 869 | #D-* Examples: |
---|
| 870 | #D- |
---|
| 871 | function IGCM_sys_Put_Dods { |
---|
| 872 | IGCM_debug_PushStack "IGCM_sys_Put_Dods" $@ |
---|
| 873 | if ( $DEBUG_sys ) ; then |
---|
| 874 | echo "IGCM_sys_Put_Dods :" $@ |
---|
| 875 | fi |
---|
[1179] | 876 | typeset status |
---|
[771] | 877 | if [ $DRYRUN = 0 ]; then |
---|
| 878 | # We take our time on that |
---|
| 879 | sleep 10 |
---|
| 880 | IGCM_sys_TestDirArchive ${R_SAVE}/${1} |
---|
| 881 | if [ $? != 0 ] ; then |
---|
| 882 | echo "WARNING : IGCM_sys_Put_Dods ${R_SAVE}/${1} DOES NOT EXIST ." |
---|
| 883 | IGCM_debug_PopStack "IGCM_sys_Put_Dods" |
---|
| 884 | return |
---|
| 885 | fi |
---|
| 886 | |
---|
[1012] | 887 | rsh ${STOREHOST} exec /bin/ksh <<EOF |
---|
[771] | 888 | cd ${R_SAVE} |
---|
[1012] | 889 | /arch/local/bin/dods_rm DODS/pub/${LOGIN}/${R_DODS}/${1} > /dev/null 2>&1 |
---|
[771] | 890 | /bin/chmod -R u+w ${R_SAVE}/${1} |
---|
[1012] | 891 | /arch/local/bin/dods_cp ${1} DODS/pub/${LOGIN}/${R_DODS} > /dev/null 2>&1 |
---|
[771] | 892 | /bin/chmod -R +rX ${R_SAVE}/${1} |
---|
| 893 | /bin/chmod -R u+w ${R_SAVE}/${1} |
---|
| 894 | EOF |
---|
| 895 | status=$? |
---|
| 896 | |
---|
| 897 | if [ ${status} -gt 0 ] ; then |
---|
| 898 | echo "IGCM_sys_Put_Dods : error." |
---|
| 899 | IGCM_debug_Exit "IGCM_sys_Put_Dods" |
---|
| 900 | fi |
---|
| 901 | fi |
---|
| 902 | IGCM_debug_PopStack "IGCM_sys_Put_Dods" |
---|
| 903 | } |
---|
| 904 | |
---|
| 905 | ############################################################## |
---|
| 906 | # REBUILD OPERATOR |
---|
| 907 | |
---|
[811] | 908 | #D-#================================================== |
---|
[1163] | 909 | #D-function IGCM_sys_sync |
---|
| 910 | #D-* Purpose: flush buffer on disk (dummy function on Ada) |
---|
| 911 | #D-* Examples: |
---|
| 912 | #D- |
---|
| 913 | function IGCM_sys_sync { |
---|
| 914 | IGCM_debug_PushStack "IGCM_sys_sync" $@ |
---|
| 915 | if ( $DEBUG_sys ) ; then |
---|
| 916 | echo "IGCM_sys_sync :" $@ |
---|
| 917 | echo "Dummy call, let the system do that." |
---|
| 918 | fi |
---|
| 919 | IGCM_debug_PopStack "IGCM_sys_sync" |
---|
| 920 | } |
---|
| 921 | |
---|
[771] | 922 | ############################################################ |
---|
| 923 | # Activate Running Environnment Variables |
---|
| 924 | |
---|
[811] | 925 | #D-#================================================== |
---|
[1239] | 926 | #D-function IGCM_sys_activ_variables |
---|
[811] | 927 | #D-* Purpose: set environement variables prior to execution |
---|
| 928 | #D-* Examples: |
---|
| 929 | #D- |
---|
[771] | 930 | function IGCM_sys_activ_variables { |
---|
| 931 | IGCM_debug_PushStack "IGCM_sys_activ_variables" |
---|
| 932 | if ( $DEBUG_sys ) ; then |
---|
[811] | 933 | echo "IGCM_sys_activ_variables" |
---|
[771] | 934 | fi |
---|
| 935 | |
---|
[811] | 936 | # -------------------------------------------------------------------- |
---|
[1485] | 937 | #D- MODULE specifications |
---|
| 938 | # -------------------------------------------------------------------- |
---|
| 939 | # Source the file EnvFile containing all module load needed to run the model. |
---|
| 940 | # EnvFile can be specified in config.card. If this is the case and if the file exists, |
---|
| 941 | # it will be used. Otherwise a default file will be used. |
---|
| 942 | if [ ! X${config_UserChoices_EnvFile} = X ] && [ -f ${config_UserChoices_EnvFile} ] ; then |
---|
| 943 | # EnvFile is set in config.card and the file exists |
---|
| 944 | IGCM_debug_Print 1 "EnvFile set in config.card will be used" |
---|
| 945 | EnvFile=${config_UserChoices_EnvFile} |
---|
| 946 | else |
---|
| 947 | IGCM_debug_Print 1 "IGCM_sys_active_variables : Default modules will be used" |
---|
| 948 | EnvFile=/smphome/rech/psl/rpsl035/.atlas_env_ada_intel_2013_0_bash > /dev/null 2>&1 |
---|
| 949 | fi |
---|
| 950 | IGCM_debug_Print 1 "IGCM_sys_active_variables : Following EnvFile will be used :" |
---|
| 951 | IGCM_debug_Print 1 ${EnvFile} |
---|
| 952 | . ${EnvFile} |
---|
| 953 | |
---|
| 954 | IGCM_debug_Print 1 "IGCM_sys_active_variables : Now loaded modules for Ada. " |
---|
| 955 | module list |
---|
| 956 | |
---|
| 957 | # -------------------------------------------------------------------- |
---|
[811] | 958 | #D- MPI specifications |
---|
| 959 | # -------------------------------------------------------------------- |
---|
| 960 | |
---|
| 961 | # -------------------------------------------------------------------- |
---|
| 962 | #D- Other specifications |
---|
| 963 | # -------------------------------------------------------------------- |
---|
| 964 | |
---|
[771] | 965 | ulimit -s unlimited |
---|
[1012] | 966 | ## to be done only one time |
---|
| 967 | ## export LD_LIBRARY_PATH=${LD_LIBRARY_PATH}:/smplocal/pub/NetCDF/4.1.3/lib:/smplocal/pub/HDF5/1.8.9/seq/lib |
---|
[1068] | 968 | ## echo ${LD_LIBRARY_PATH} | grep -i netcdf >/dev/null 2>&1 || export LD_LIBRARY_PATH=${LD_LIBRARY_PATH}:/smplocal/pub/NetCDF/4.1.3/lib:/smplocal/pub/HDF5/1.8.9/seq/lib |
---|
[1012] | 969 | IGCM_debug_Print 1 "set LD_LIBRARY_PATH=${LD_LIBRARY_PATH}" |
---|
[771] | 970 | |
---|
[959] | 971 | export MP_STDOUTMODE=combined |
---|
| 972 | IGCM_debug_Print 1 "set MP_STDOUTMODE=${MP_STDOUTMODE}" |
---|
| 973 | |
---|
[1195] | 974 | ## fix to reduce memory usage. Required since 2014/22/04. On ada IDRIS. |
---|
| 975 | #export MP_EUILIBPATH=/smplocal/lib/ibmhpc/pe12012/ppe.pami/gnu/lib64/pami64 |
---|
| 976 | #IGCM_debug_Print 1 "set MP_EUILIBPATH=${MP_EUILIBPATH}" |
---|
[1004] | 977 | |
---|
[771] | 978 | IGCM_debug_PopStack "IGCM_sys_activ_variables" |
---|
| 979 | } |
---|
| 980 | |
---|
| 981 | ############################################################ |
---|
| 982 | # Desactivate Running Environnment Variables |
---|
| 983 | |
---|
[811] | 984 | #D-#================================================== |
---|
| 985 | #D-function IGCM_sys_desactiv_variables |
---|
| 986 | #D-* Purpose: unset environement variables after execution |
---|
| 987 | #D-* Examples: |
---|
| 988 | #D- |
---|
[771] | 989 | function IGCM_sys_desactiv_variables { |
---|
| 990 | IGCM_debug_PushStack "IGCM_sys_desactiv_variables" |
---|
| 991 | if ( $DEBUG_sys ) ; then |
---|
[811] | 992 | echo "IGCM_sys_desactiv_variables" |
---|
[771] | 993 | fi |
---|
| 994 | # -------------------------------------------------------------------- |
---|
| 995 | #D- MPI specifications |
---|
| 996 | # -------------------------------------------------------------------- |
---|
| 997 | |
---|
| 998 | # -------------------------------------------------------------------- |
---|
| 999 | #D- Other specifications |
---|
| 1000 | # -------------------------------------------------------------------- |
---|
| 1001 | |
---|
| 1002 | IGCM_debug_PopStack "IGCM_sys_desactiv_variables" |
---|
| 1003 | } |
---|
| 1004 | |
---|
| 1005 | ############################################################ |
---|
[1238] | 1006 | # Update job headers to be used by the scheduler |
---|
| 1007 | |
---|
| 1008 | #D-#================================================== |
---|
| 1009 | #D-function IGCM_sys_updateHeaders |
---|
| 1010 | #D-* Purpose: Update job headers to be used by the scheduler |
---|
| 1011 | #D-* Examples: IGCM_sys_updateHeaders /path/to/Job_MYEXP |
---|
| 1012 | #D- |
---|
| 1013 | function IGCM_sys_updateHeaders { |
---|
| 1014 | IGCM_debug_PushStack "IGCM_sys_updateHeaders" |
---|
| 1015 | if ( $DEBUG_sys ) ; then |
---|
| 1016 | echo "IGCM_sys_updateHeaders" |
---|
| 1017 | fi |
---|
| 1018 | typeset file |
---|
| 1019 | file=$1 |
---|
| 1020 | |
---|
| 1021 | if [ ${executionType} -eq 1 ] ; then |
---|
| 1022 | # MPMD + MPI |
---|
[1305] | 1023 | if [ X${MPIEnvironment} = XIBM ] ; then |
---|
| 1024 | sed -e "/::openMPthreads::/d" \ |
---|
[1238] | 1025 | -e "s/::JobNumProcTot::/${coreNumber}/" \ |
---|
[1305] | 1026 | ${file} > ${file}.tmp |
---|
| 1027 | else |
---|
| 1028 | sed -e "/::openMPthreads::/d" \ |
---|
| 1029 | -e "s/@ job_type = parallel/@ job_type = mpich/" \ |
---|
| 1030 | -e "s/::JobNumProcTot::/${coreNumber}/" \ |
---|
| 1031 | ${file} > ${file}.tmp |
---|
| 1032 | fi |
---|
[1238] | 1033 | |
---|
| 1034 | elif [ ${executionType} -eq 2 ] ; then |
---|
| 1035 | # MPMD + MPI + OMP |
---|
[1305] | 1036 | if [ X${MPIEnvironment} = XIBM ] ; then |
---|
| 1037 | sed -e "s/::openMPthreads::/${openMPthreads}/" \ |
---|
[1242] | 1038 | -e "s/::JobNumProcTot::/${mpiTasks}/" \ |
---|
[1305] | 1039 | ${file} > ${file}.tmp |
---|
| 1040 | else |
---|
| 1041 | (( nodeNumber = coreNumber / core_per_node )) |
---|
| 1042 | [ $(( ${coreNumber} % ${core_per_node} )) -ne 0 ] && (( nodeNumber = nodeNumber + 1 )) |
---|
| 1043 | sed -e "/::openMPthreads::/d" \ |
---|
| 1044 | -e "s/@ job_type = parallel/@ job_type = mpich/" \ |
---|
| 1045 | -e "s/@ total_tasks = ::JobNumProcTot::/@ node = ${nodeNumber} /" \ |
---|
| 1046 | -e "/@ as_limit = 3.5gb/d" \ |
---|
| 1047 | -e "s/::JobNumProcTot::/${mpiTasks}/" \ |
---|
| 1048 | ${file} > ${file}.tmp |
---|
| 1049 | fi |
---|
[1238] | 1050 | |
---|
| 1051 | elif [ ${executionType} -eq 3 ] ; then |
---|
| 1052 | # SPMD + MPI/OMP |
---|
[1305] | 1053 | if [ X${MPIEnvironment} = XIBM ] ; then |
---|
| 1054 | sed -e "s/::openMPthreads::/${openMPthreads}/" \ |
---|
[1238] | 1055 | -e "s/::JobNumProcTot::/${mpiTasks}/" \ |
---|
[1305] | 1056 | ${file} > ${file}.tmp |
---|
| 1057 | else |
---|
| 1058 | sed -e "s/::openMPthreads::/${openMPthreads}/" \ |
---|
| 1059 | -e "s/@ job_type = parallel/@ job_type = mpich/" \ |
---|
| 1060 | -e "s/::JobNumProcTot::/${mpiTasks}/" \ |
---|
| 1061 | ${file} > ${file}.tmp |
---|
| 1062 | fi |
---|
[1238] | 1063 | |
---|
| 1064 | elif [ ${executionType} -eq 4 ] ; then |
---|
| 1065 | # SPMD + MPI only |
---|
[1305] | 1066 | if [ X${MPIEnvironment} = XIBM ] ; then |
---|
| 1067 | sed -e "s/::JobNumProcTot::/${mpiTasks}/" \ |
---|
[1238] | 1068 | -e "/::openMPthreads::/d" \ |
---|
[1305] | 1069 | ${file} > ${file}.tmp |
---|
| 1070 | else |
---|
| 1071 | sed -e "s/::JobNumProcTot::/${mpiTasks}/" \ |
---|
| 1072 | -e "s/@ job_type = parallel/@ job_type = mpich/" \ |
---|
| 1073 | -e "/::openMPthreads::/d" \ |
---|
| 1074 | ${file} > ${file}.tmp |
---|
| 1075 | fi |
---|
[1238] | 1076 | |
---|
| 1077 | elif [ ${executionType} -eq 5 ] ; then |
---|
| 1078 | # SPMD + OMP only |
---|
| 1079 | sed -e "s/::openMPthreads::/${openMPthreads}/" \ |
---|
[1240] | 1080 | -e "s/@ job_type = parallel/@ job_type = serial/" \ |
---|
[1238] | 1081 | -e "/::JobNumProcTot::/d" \ |
---|
| 1082 | ${file} > ${file}.tmp |
---|
| 1083 | |
---|
| 1084 | elif [ ${executionType} -eq 6 ] ; then |
---|
| 1085 | # SEQUENTIAL THEN |
---|
| 1086 | sed -e "s/::JobNumProcTot::/1/" \ |
---|
[1240] | 1087 | -e "s/@ job_type = parallel/@ job_type = serial/" \ |
---|
[1238] | 1088 | -e "/::openMPthreads::/d" \ |
---|
| 1089 | ${file} > ${file}.tmp |
---|
| 1090 | |
---|
| 1091 | fi |
---|
| 1092 | |
---|
| 1093 | IGCM_sys_Mv ${file}.tmp ${file} |
---|
| 1094 | |
---|
| 1095 | IGCM_debug_PopStack "IGCM_sys_updateHeaders" |
---|
| 1096 | } |
---|
| 1097 | |
---|
| 1098 | ############################################################ |
---|
[771] | 1099 | # Build MPI/OMP scripts run file (dummy function) |
---|
| 1100 | |
---|
[811] | 1101 | #D-#================================================== |
---|
| 1102 | #D-function IGCM_sys_build_run_file |
---|
| 1103 | #D-* Purpose: build run file (deprecated) |
---|
| 1104 | #D-* Examples: |
---|
| 1105 | #D- |
---|
[771] | 1106 | function IGCM_sys_build_run_file { |
---|
| 1107 | |
---|
[811] | 1108 | IGCM_debug_Print 3 " dummy function : IGCM_sys_build_run_file " |
---|
[771] | 1109 | |
---|
| 1110 | } |
---|
| 1111 | |
---|
| 1112 | ############################################################ |
---|
| 1113 | # Build MPI/OMP scripts |
---|
[811] | 1114 | |
---|
| 1115 | #D-#================================================== |
---|
| 1116 | #D-function IGCM_sys_build_execution_scripts |
---|
| 1117 | #D-* Purpose: build execution scripts to be launch by ${HOST_MPIRUN_COMMAND} |
---|
| 1118 | #D-* Examples: |
---|
| 1119 | #D- |
---|
[771] | 1120 | function IGCM_sys_build_execution_scripts |
---|
| 1121 | { |
---|
| 1122 | IGCM_debug_PushStack "IGCM_sys_build_execution_scripts" $@ |
---|
| 1123 | if ( $DEBUG_sys ) ; then |
---|
| 1124 | echo "IGCM_sys_build_execution_scripts " $@ |
---|
| 1125 | fi |
---|
| 1126 | |
---|
| 1127 | EXECUTION=${HOST_MPIRUN_COMMAND} |
---|
| 1128 | |
---|
[1179] | 1129 | # MPMD mode |
---|
[771] | 1130 | if ( ${OK_PARA_MPMD} ) ; then |
---|
| 1131 | |
---|
[1305] | 1132 | # MPI IBM Environment |
---|
| 1133 | if ( [ "X${LOADL_STEP_TYPE}" = "XPARALLEL" ] || [ "X${LOADL_STEP_TYPE}" = "XSERIAL" ] ) ; then |
---|
| 1134 | IGCM_debug_Print 1 "You use IBM MPI environment" |
---|
| 1135 | if [ -f run_file ] ; then |
---|
| 1136 | IGCM_sys_Rm -f run_file |
---|
| 1137 | fi |
---|
| 1138 | touch run_file |
---|
[771] | 1139 | |
---|
[1305] | 1140 | # Build run_file |
---|
[771] | 1141 | |
---|
[1305] | 1142 | # First loop on the components for the coupler ie oasis (only if oasis3) |
---|
| 1143 | # the coupler ie oasis3 must be the first one |
---|
| 1144 | for comp in ${config_ListOfComponents[*]} ; do |
---|
[771] | 1145 | |
---|
[1305] | 1146 | eval ExeNameIn=\${config_Executable_${comp}[0]} |
---|
| 1147 | eval ExeNameOut=\${config_Executable_${comp}[1]} |
---|
[771] | 1148 | |
---|
[1305] | 1149 | # for CPL component only |
---|
| 1150 | if [ "X${comp}" = "XCPL" ] ; then |
---|
[771] | 1151 | |
---|
[1305] | 1152 | eval comp_proc_mpi_loc=\${${comp}_PROC_MPI} |
---|
| 1153 | eval comp_proc_omp_loc=\${${comp}_PROC_OMP} |
---|
[777] | 1154 | |
---|
[1305] | 1155 | if ( ${OK_PARA_MPI} ) ; then |
---|
| 1156 | (( mpi_count = 1 )) |
---|
| 1157 | until [ ${mpi_count} -gt ${comp_proc_mpi_loc} ] ; do |
---|
| 1158 | echo "./${ExeNameOut}" >> run_file |
---|
| 1159 | (( mpi_count = mpi_count + 1 )) |
---|
| 1160 | done |
---|
| 1161 | else |
---|
| 1162 | echo "./${ExeNameOut} " >> run_file |
---|
| 1163 | fi |
---|
[777] | 1164 | fi |
---|
[1305] | 1165 | |
---|
| 1166 | done |
---|
| 1167 | |
---|
| 1168 | # Then second loop on the components |
---|
| 1169 | for comp in ${config_ListOfComponents[*]} ; do |
---|
| 1170 | |
---|
| 1171 | eval ExeNameIn=\${config_Executable_${comp}[0]} |
---|
| 1172 | eval ExeNameOut=\${config_Executable_${comp}[1]} |
---|
| 1173 | |
---|
| 1174 | # Only if we really have an executable for the component and not the coupler ie oasis: |
---|
| 1175 | if ( [ "X${ExeNameOut}" != X\"\" ] && [ "X${comp}" != "XCPL" ] ) ; then |
---|
| 1176 | |
---|
| 1177 | eval comp_proc_mpi_loc=\${${comp}_PROC_MPI} |
---|
| 1178 | eval comp_proc_omp_loc=\${${comp}_PROC_OMP} |
---|
| 1179 | |
---|
| 1180 | if ( ${OK_PARA_OMP} ) ; then |
---|
| 1181 | # Check if the number of threads is correct |
---|
| 1182 | case ${comp_proc_omp_loc} in |
---|
| 1183 | 1|2|4) |
---|
| 1184 | IGCM_debug_Print 1 "You run ${ExeNameOut} on ${comp_proc_omp_loc} OMP threads on IBM MPI Environment" |
---|
| 1185 | IGCM_debug_Print 1 "Beware : it may you use more CPU than needed." |
---|
| 1186 | ;; |
---|
[1357] | 1187 | 8) |
---|
| 1188 | IGCM_debug_Print 1 "You run ${ExeNameOut} on ${comp_proc_omp_loc} OMP threads on IBM MPI Environment" |
---|
| 1189 | IGCM_debug_Print 1 "Beware : it may you use more CPU than needed." |
---|
| 1190 | IGCM_debug_Print 1 "Beware : these settings should not be used for IPSLCM coupled model!" |
---|
| 1191 | ;; |
---|
| 1192 | 16) |
---|
[1305] | 1193 | IGCM_debug_Exit "ERROR with OMP parameters !" |
---|
| 1194 | IGCM_debug_Print 2 "Beware : ${comp_proc_omp_loc} is too much for MPMD mode" |
---|
| 1195 | IGCM_debug_Print 2 "You will use more CPU than needed : try to use Intel-MPI environment to do such a thing !" |
---|
| 1196 | IGCM_debug_Verif_Exit |
---|
| 1197 | ;; |
---|
| 1198 | *) |
---|
| 1199 | IGCM_debug_Exit "ERROR with OMP parameters !" |
---|
| 1200 | IGCM_debug_Print 2 "${comp_proc_omp_loc} is not possible as number of OMP threads" |
---|
| 1201 | IGCM_debug_Print 2 "Only 1,2,4,8,16 as number of OMP threads are possible " |
---|
| 1202 | IGCM_debug_Verif_Exit |
---|
| 1203 | ;; |
---|
| 1204 | esac |
---|
| 1205 | |
---|
| 1206 | fi |
---|
| 1207 | |
---|
| 1208 | if ( ${OK_PARA_MPI} ) ; then |
---|
| 1209 | (( mpi_count = 1 )) |
---|
| 1210 | until [ ${mpi_count} -gt ${comp_proc_mpi_loc} ] ; do |
---|
| 1211 | if ( ${OK_PARA_OMP} ) ; then |
---|
| 1212 | echo "env OMP_NUM_THREADS=$comp_proc_omp_loc ./${ExeNameOut}" >> run_file |
---|
| 1213 | else |
---|
| 1214 | echo "./${ExeNameOut}" >> run_file |
---|
| 1215 | fi |
---|
| 1216 | (( mpi_count = mpi_count + 1 )) |
---|
| 1217 | done |
---|
| 1218 | else |
---|
| 1219 | echo "./${ExeNameOut} " >> run_file |
---|
| 1220 | fi |
---|
| 1221 | fi |
---|
| 1222 | done |
---|
| 1223 | if ( ${OK_PARA_OMP} ) ; then |
---|
| 1224 | export KMP_STACKSIZE=200m |
---|
[771] | 1225 | fi |
---|
| 1226 | |
---|
[1305] | 1227 | EXECUTION="${HOST_MPIRUN_COMMAND} -pgmmodel mpmd -cmdfile ./run_file" |
---|
[771] | 1228 | |
---|
[1305] | 1229 | IGCM_sys_Chmod u+x run_file |
---|
| 1230 | if ( $DEBUG_sys ) ; then |
---|
| 1231 | echo "run_file contains : " |
---|
| 1232 | cat run_file |
---|
| 1233 | fi |
---|
[771] | 1234 | |
---|
| 1235 | |
---|
[1305] | 1236 | # MPI Intel Environment |
---|
| 1237 | else |
---|
| 1238 | IGCM_debug_Print 1 "You use Intel MPI environment" |
---|
[777] | 1239 | |
---|
[1305] | 1240 | # Only MPI (MPMD) |
---|
| 1241 | if ( ! ${OK_PARA_OMP} ) ; then |
---|
| 1242 | init_exec=n |
---|
| 1243 | |
---|
| 1244 | # First loop on the components for the coupler ie oasis (only if oasis3) |
---|
| 1245 | # the coupler ie oasis3 must be the first one |
---|
| 1246 | for comp in ${config_ListOfComponents[*]} ; do |
---|
| 1247 | |
---|
| 1248 | eval ExeNameIn=\${config_Executable_${comp}[0]} |
---|
| 1249 | eval ExeNameOut=\${config_Executable_${comp}[1]} |
---|
| 1250 | |
---|
| 1251 | # for CPL component only |
---|
| 1252 | if [ "X${comp}" = "XCPL" ] && [ "X${ExeNameOut}" != X\"\" ] ; then |
---|
| 1253 | |
---|
| 1254 | eval comp_proc_mpi_loc=\${${comp}_PROC_MPI} |
---|
| 1255 | eval comp_proc_omp_loc=\${${comp}_PROC_OMP} |
---|
| 1256 | |
---|
| 1257 | echo "#!/bin/ksh" > script_${ExeNameOut}.ksh |
---|
| 1258 | echo "" >> script_${ExeNameOut}.ksh |
---|
| 1259 | echo "./${ExeNameOut}" >> script_${ExeNameOut}.ksh |
---|
| 1260 | IGCM_sys_Chmod u+x script_${ExeNameOut}.ksh |
---|
| 1261 | EXECUTION="${EXECUTION} -np ${comp_proc_mpi_loc} ./script_${ExeNameOut}.ksh" |
---|
| 1262 | init_exec=y |
---|
| 1263 | fi |
---|
| 1264 | done |
---|
| 1265 | # Then second loop on the components |
---|
| 1266 | for comp in ${config_ListOfComponents[*]} ; do |
---|
| 1267 | |
---|
| 1268 | eval ExeNameIn=\${config_Executable_${comp}[0]} |
---|
| 1269 | eval ExeNameOut=\${config_Executable_${comp}[1]} |
---|
| 1270 | |
---|
| 1271 | # Only if we really have an executable for the component and not the coupler ie oasis: |
---|
| 1272 | if ( [ "X${ExeNameOut}" != X\"\" ] && [ "X${comp}" != "XCPL" ] ) ; then |
---|
| 1273 | |
---|
| 1274 | eval comp_proc_mpi_loc=\${${comp}_PROC_MPI} |
---|
| 1275 | eval comp_proc_omp_loc=\${${comp}_PROC_OMP} |
---|
| 1276 | |
---|
| 1277 | echo "#!/bin/ksh" > script_${ExeNameOut}.ksh |
---|
| 1278 | echo "" >> script_${ExeNameOut}.ksh |
---|
| 1279 | echo "./${ExeNameOut}" >> script_${ExeNameOut}.ksh |
---|
| 1280 | IGCM_sys_Chmod u+x script_${ExeNameOut}.ksh |
---|
| 1281 | |
---|
| 1282 | if [ ${init_exec} = y ] ; then |
---|
| 1283 | EXECUTION="${EXECUTION} : -np ${comp_proc_mpi_loc} ./script_${ExeNameOut}.ksh" |
---|
[1093] | 1284 | else |
---|
[1305] | 1285 | EXECUTION="${EXECUTION} -np ${comp_proc_mpi_loc} ./script_${ExeNameOut}.ksh" |
---|
| 1286 | init_exec=y |
---|
[1093] | 1287 | fi |
---|
[1305] | 1288 | fi |
---|
| 1289 | done |
---|
| 1290 | # MPI-OpenMP (MPMD) |
---|
| 1291 | else |
---|
| 1292 | |
---|
| 1293 | # Execution specifications |
---|
| 1294 | EXECUTION="${EXECUTION} -configfile run_file" |
---|
| 1295 | export KMP_STACKSIZE=200m |
---|
| 1296 | if [ -f run_file ] ; then |
---|
| 1297 | IGCM_sys_Rm -f run_file |
---|
[777] | 1298 | fi |
---|
[1305] | 1299 | touch run_file |
---|
| 1300 | |
---|
| 1301 | # Initialisation of variables |
---|
| 1302 | string_final="" |
---|
| 1303 | string_final_hexa="" |
---|
| 1304 | current_core=0 |
---|
| 1305 | executable_nb=1 |
---|
| 1306 | |
---|
| 1307 | # Hosts treatment |
---|
| 1308 | for nodes in `echo $LOADL_PROCESSOR_LIST` |
---|
| 1309 | do |
---|
| 1310 | host[$i]=$nodes |
---|
| 1311 | i=$((i+1)) |
---|
| 1312 | done |
---|
| 1313 | |
---|
| 1314 | # Loop on the components |
---|
| 1315 | for comp in ${config_ListOfComponents[*]} ; do |
---|
| 1316 | |
---|
| 1317 | eval ExeNameIn=\${config_Executable_${comp}[0]} |
---|
| 1318 | eval ExeNameOut=\${config_Executable_${comp}[1]} |
---|
| 1319 | |
---|
| 1320 | # Not possible if oasis has an executable (i.e old version of oasis3) |
---|
| 1321 | if ( [ "X${ExeNameOut}" != X\"\" ] && [ "X${comp}" = "XCPL" ] ) ; then |
---|
| 1322 | IGCM_debug_Exit "ERROR MPMD with hybrid MPI-OpenMP is not available with oasis3 version" |
---|
| 1323 | IGCM_debug_Print 2 "Only available with oasis3-MCT version coupler" |
---|
| 1324 | IGCM_debug_Verif_Exit |
---|
| 1325 | fi |
---|
| 1326 | |
---|
| 1327 | # Only if we really have an executable for the component : |
---|
| 1328 | if [ "X${ExeNameOut}" != X\"\" ] ; then |
---|
| 1329 | |
---|
| 1330 | eval comp_proc_mpi_loc=\${${comp}_PROC_MPI} |
---|
| 1331 | eval comp_proc_omp_loc=\${${comp}_PROC_OMP} |
---|
| 1332 | |
---|
| 1333 | # Check if the number of threads is correct |
---|
| 1334 | case ${comp_proc_omp_loc} in |
---|
| 1335 | 1|2|4|8|16) |
---|
| 1336 | IGCM_debug_Print 1 "You run ${ExeNameOut} on ${comp_proc_omp_loc} OMP threads" |
---|
| 1337 | ;; |
---|
| 1338 | *) |
---|
| 1339 | IGCM_debug_Exit "ERROR with OMP parameters !" |
---|
| 1340 | IGCM_debug_Print 2 "${comp_proc_omp_loc} is not possible as number of OMP threads" |
---|
| 1341 | IGCM_debug_Print 2 "Only 1,2,4,8,16 as number of OMP threads are possible " |
---|
| 1342 | IGCM_debug_Verif_Exit |
---|
| 1343 | ;; |
---|
| 1344 | esac |
---|
| 1345 | |
---|
| 1346 | |
---|
| 1347 | # Build run_file for Ada Intel-MPI environment : method used to assign cores and nodes for the MPI process by using hexadecimal mask |
---|
| 1348 | # Example of run_file : |
---|
| 1349 | #-host host0 -n 4 -env I_MPI_PIN_DOMAIN=[ff,ff00,ff0000,ff000000] ./a.out |
---|
| 1350 | #-host host1 -n 4 -env I_MPI_PIN_DOMAIN=[ff,ff00,ff0000,ff000000] ./a.out |
---|
| 1351 | #-host host2 -n 10 -env I_MPI_PIN_DOMAIN=[3,c,30,c0,300,c00,3000,c000,30000,c0000,100000,200000,400000,800000,1000000,2000000,4000000,8000000,10000000,20000000] ./b.out |
---|
| 1352 | #-host host2 -n 10 ./c.out |
---|
| 1353 | # Example of final command : |
---|
| 1354 | # mpirun -configfile run_file |
---|
| 1355 | |
---|
| 1356 | rank=0 |
---|
| 1357 | # For one specific executable, loop on mpi process |
---|
| 1358 | for nb_proc_mpi in `seq 0 $(($comp_proc_mpi_loc-1))`; do |
---|
| 1359 | (( index_host = current_core / core_per_node )) |
---|
| 1360 | host_value=${host[${index_host}]} |
---|
| 1361 | (( slot = current_core % core_per_node )) |
---|
| 1362 | # loop on omp threads for each mpi process (set the appropriate bit to 1 and append it to previous one) |
---|
| 1363 | for index in `seq $slot $(($slot+$comp_proc_omp_loc-1))`; do |
---|
| 1364 | string_final="1"$string_final |
---|
| 1365 | done |
---|
| 1366 | # convert binary mask to hexadecimal mask |
---|
| 1367 | if [ $rank -ne 0 ] ; then |
---|
| 1368 | string_final_hexa=$string_final_hexa","$( printf '%x\n' "$((2#$string_final))" ) |
---|
| 1369 | else |
---|
| 1370 | string_final_hexa=$( printf '%x\n' "$((2#$string_final))" ) |
---|
| 1371 | fi |
---|
| 1372 | # replace bit 1 by bit 0 in order to append next one (next one wil be 1) |
---|
| 1373 | string_final=$( echo $string_final | sed "s/1/0/g" ) |
---|
| 1374 | # mpi rank = mpi_rank + 1 |
---|
| 1375 | (( rank = rank + 1 )) |
---|
| 1376 | # current core takes into account the number of omp threads which was previously append |
---|
| 1377 | (( current_core = current_core + comp_proc_omp_loc )) |
---|
| 1378 | # We write to the configuration file either we switch to the next node or we switch to the next executable |
---|
| 1379 | if ( [ $(( current_core / core_per_node )) -ne $index_host ] || [ $nb_proc_mpi -eq $(($comp_proc_mpi_loc-1)) ] ) ; then |
---|
| 1380 | # I_MPI_PIN_DOMAIN variable must be given once per node |
---|
| 1381 | if [ $executable_nb -eq 1 ] ; then |
---|
| 1382 | echo "-host $host_value -n $rank -env I_MPI_PIN_DOMAIN=[$string_final_hexa] ./$ExeNameOut" >> run_file |
---|
| 1383 | else |
---|
| 1384 | sed -i "/$host_value/s/\]/\,$string_final_hexa\]/g" run_file |
---|
| 1385 | echo "-host $host_value -n $rank ./$ExeNameOut" >> run_file |
---|
| 1386 | fi |
---|
| 1387 | # +1 for the number of executbale on the same node |
---|
| 1388 | if [ $nb_proc_mpi -eq $(($comp_proc_mpi_loc-1)) ] ; then |
---|
| 1389 | (( executable_nb = executable_nb + 1 )) |
---|
| 1390 | fi |
---|
| 1391 | # Some initializations if we switch to the next node |
---|
| 1392 | if [ $(( current_core / core_per_node )) -ne $index_host ] ; then |
---|
| 1393 | string_final="" |
---|
| 1394 | string_final_hexa="" |
---|
| 1395 | rank=0 |
---|
| 1396 | executable_nb=1 |
---|
| 1397 | fi |
---|
| 1398 | fi |
---|
| 1399 | done |
---|
| 1400 | |
---|
| 1401 | fi |
---|
| 1402 | done |
---|
| 1403 | IGCM_sys_Chmod u+x run_file |
---|
| 1404 | if ( $DEBUG_sys ) ; then |
---|
| 1405 | echo "run_file contains : " |
---|
| 1406 | cat run_file |
---|
[1093] | 1407 | fi |
---|
[771] | 1408 | fi |
---|
| 1409 | fi |
---|
| 1410 | |
---|
[1180] | 1411 | # Only one executable (SPMD mode). |
---|
| 1412 | else |
---|
[771] | 1413 | |
---|
| 1414 | for comp in ${config_ListOfComponents[*]} ; do |
---|
| 1415 | |
---|
| 1416 | # Only if we really have an executable for the component : |
---|
| 1417 | eval ExeNameOut=\${config_Executable_${comp}[1]} |
---|
| 1418 | if ( [ "X${ExeNameOut}" != X\"\" ] && [ "X${ExeNameOut}" != "Xinca.dat" ] ) ; then |
---|
[847] | 1419 | |
---|
| 1420 | if ( ${OK_PARA_OMP} ) ; then |
---|
| 1421 | eval comp_proc_omp_loc=\${${comp}_PROC_OMP} |
---|
[853] | 1422 | export KMP_STACKSIZE=200m |
---|
| 1423 | #export KMP_LIBRARY=turnaround |
---|
[847] | 1424 | #echo "export KMP_STACKSIZE=3g" >> script_${ExeNameOut}.ksh |
---|
| 1425 | #echo "export KMP_LIBRARY=turnaround" >> script_${ExeNameOut}.ksh |
---|
| 1426 | #echo "export MKL_SERIAL=YES" >> script_${ExeNameOut}.ksh |
---|
| 1427 | fi |
---|
[1305] | 1428 | if ( ${OK_PARA_MPI} ) ; then |
---|
| 1429 | if ( [ "X${LOADL_STEP_TYPE}" = "XPARALLEL" ] || [ "X${LOADL_STEP_TYPE}" = "XSERIAL" ] ) ; then |
---|
| 1430 | EXECUTION="${HOST_MPIRUN_COMMAND} ./${ExeNameOut}" |
---|
| 1431 | else |
---|
| 1432 | eval comp_proc_mpi_loc=\${${comp}_PROC_MPI} |
---|
| 1433 | EXECUTION="${HOST_MPIRUN_COMMAND} -np ${comp_proc_mpi_loc} ./${ExeNameOut}" |
---|
| 1434 | fi |
---|
| 1435 | else |
---|
| 1436 | EXECUTION="/usr/bin/time ./${ExeNameOut}" |
---|
| 1437 | fi |
---|
[771] | 1438 | fi |
---|
| 1439 | |
---|
| 1440 | done |
---|
| 1441 | |
---|
| 1442 | fi |
---|
| 1443 | |
---|
| 1444 | IGCM_debug_Print 1 "sys ada : execution command is " |
---|
| 1445 | IGCM_debug_Print 1 "$EXECUTION" |
---|
| 1446 | |
---|
| 1447 | IGCM_debug_PopStack "IGCM_sys_build_execution_scripts" |
---|
| 1448 | } |
---|
| 1449 | |
---|
[933] | 1450 | #D-#================================================== |
---|
| 1451 | #D-function IGCM_sys_check_path |
---|
| 1452 | #D-* Purpose: check that RUN_DIR_PATH that will be removed on some machine |
---|
| 1453 | #D-* do not point to an important use directory. Stop immediately in that case. |
---|
| 1454 | #D-* Examples: |
---|
| 1455 | #D- |
---|
| 1456 | function IGCM_sys_check_path { |
---|
| 1457 | IGCM_debug_PushStack "IGCM_sys_check_path" |
---|
| 1458 | if ( $DEBUG_sys ) ; then |
---|
| 1459 | echo "IGCM_sys_check_path" |
---|
| 1460 | fi |
---|
[811] | 1461 | |
---|
[1012] | 1462 | if ( [ X${RUN_DIR_PATH} = X${HOME} ] || [ X${RUN_DIR_PATH} = X${WORKDIR} ] || [ X${RUN_DIR_PATH} = X${ARCHIVE} ] ) ; then |
---|
[933] | 1463 | IGCM_debug_Print 1 "Variable RUN_DIR_PATH is pointing to an important directory : ${RUN_DIR_PATH}" |
---|
| 1464 | IGCM_debug_Print 1 "Please check the RUN_DIR_PATH definition in your Job : Job_${config_UserChoices_JobName}" |
---|
[936] | 1465 | IGCM_debug_Exit "This will stop the job" |
---|
[933] | 1466 | fi |
---|
| 1467 | IGCM_debug_PopStack "IGCM_sys_check_path" |
---|
| 1468 | } |
---|
| 1469 | |
---|
[811] | 1470 | #D-#================================================== |
---|
| 1471 | #D-function IGCM_sys_check_quota |
---|
| 1472 | #D-* Purpose: check user quota. Stop the simulation if quota above 90% |
---|
| 1473 | #D-* Examples: |
---|
| 1474 | #D- |
---|
[771] | 1475 | function IGCM_sys_check_quota { |
---|
| 1476 | IGCM_debug_PushStack "IGCM_sys_check_quota" |
---|
| 1477 | if ( $DEBUG_sys ) ; then |
---|
[811] | 1478 | echo "IGCM_sys_check_quota" |
---|
[771] | 1479 | fi |
---|
| 1480 | # Limit of quota (in %) |
---|
| 1481 | limit_quota=90 |
---|
[811] | 1482 | |
---|
[771] | 1483 | # Check of the volume |
---|
[945] | 1484 | volume_quota=$(quota_u -w 2>/dev/null| grep 'Quota soft' | gawk '{print $5}') |
---|
[771] | 1485 | if [ ! X${volume_quota} = X ] ; then |
---|
| 1486 | quota_volume=${volume_quota%%\%} |
---|
| 1487 | # echo $quota_volume |
---|
[946] | 1488 | if [ $(echo "${quota_volume} > ${limit_quota}" | bc) -eq 1 ] ; then |
---|
[771] | 1489 | IGCM_debug_Print 1 "Please, check your quota of volume on workgpfs" |
---|
| 1490 | IGCM_debug_Print 1 "${quota_volume}% of your quota is used" |
---|
| 1491 | IGCM_debug_Print 1 "Use the quota_u -w command to check" |
---|
| 1492 | IGCM_debug_Print 1 "You must have more than 10% available to run" |
---|
| 1493 | IGCM_debug_Exit "Not enough space to run ! STOP HERE" |
---|
| 1494 | IGCM_debug_Verif_Exit |
---|
| 1495 | fi |
---|
| 1496 | |
---|
| 1497 | fi |
---|
| 1498 | IGCM_debug_PopStack "IGCM_sys_check_quota" |
---|
| 1499 | } |
---|
| 1500 | |
---|
| 1501 | #D-#================================================== |
---|
[1286] | 1502 | #D-function IGCM_sys_projectAccounting |
---|
| 1503 | #D-* Purpose: store project accounting information in a file |
---|
| 1504 | #D-* Examples: |
---|
| 1505 | #D- |
---|
| 1506 | function IGCM_sys_projectAccounting { |
---|
| 1507 | IGCM_debug_PushStack "IGCM_sys_projectAccounting" |
---|
| 1508 | if ( $DEBUG_sys ) ; then |
---|
| 1509 | echo "IGCM_sys_check_quota" |
---|
| 1510 | fi |
---|
| 1511 | |
---|
| 1512 | cpt > $1 |
---|
| 1513 | |
---|
| 1514 | IGCM_debug_PopStack "IGCM_sys_projectAccounting" |
---|
| 1515 | } |
---|
| 1516 | |
---|
| 1517 | #D-#================================================== |
---|
[1244] | 1518 | #D-function IGCM_sys_getJobSchedulerID |
---|
| 1519 | #D-* Purpose: Get the job ID during execution |
---|
| 1520 | #D-* Examples: IGCM_sys_getJobSchedulerID jobSchedulerID |
---|
| 1521 | #D- |
---|
| 1522 | function IGCM_sys_getJobSchedulerID { |
---|
| 1523 | IGCM_debug_PushStack "IGCM_sys_getJobSchedulerID" |
---|
| 1524 | if ( $DEBUG_sys ) ; then |
---|
| 1525 | echo "IGCM_sys_getJobSchedulerID" |
---|
| 1526 | fi |
---|
| 1527 | |
---|
| 1528 | eval ${1}=$( echo $LOADL_STEP_ID | awk -F. '{print $4}' ) |
---|
| 1529 | |
---|
| 1530 | IGCM_debug_PopStack "IGCM_sys_getJobSchedulerID" |
---|
| 1531 | } |
---|
| 1532 | |
---|
| 1533 | #D-#================================================== |
---|
[958] | 1534 | #D-function IGCM_sys_GetJobID |
---|
[1244] | 1535 | #D-* Purpose: Get the job ID from the JobName |
---|
[1179] | 1536 | #D-* Examples: IGCM_sys_GetJobID ${JobName} ${TargetUsr} JobID |
---|
[958] | 1537 | #D- |
---|
| 1538 | function IGCM_sys_GetJobID { |
---|
| 1539 | IGCM_debug_PushStack "IGCM_sys_GetJobID" |
---|
| 1540 | if ( $DEBUG_sys ) ; then |
---|
| 1541 | echo "IGCM_sys_GetJobID" |
---|
| 1542 | fi |
---|
| 1543 | |
---|
| 1544 | # Print only the full (-W) JobID (%id) and JobName (%jn) |
---|
| 1545 | ID=$( llq -u $2 -W -f %id %jn | \ |
---|
[1305] | 1546 | gawk -v JobName=$1 '( $NF ~ JobName ) { print $1 }' ) |
---|
[958] | 1547 | |
---|
| 1548 | eval ${3}=${ID} |
---|
| 1549 | IGCM_debug_PopStack "IGCM_sys_GetJobID" |
---|
| 1550 | } |
---|
| 1551 | |
---|
| 1552 | #D-#================================================== |
---|
[771] | 1553 | #D-function IGCM_sys_CountJobInQueue |
---|
[1244] | 1554 | #D-* Purpose: Count number of users job |
---|
[771] | 1555 | #D-* Examples: IGCM_sys_CountJobInQueue ${JobName} NbRun |
---|
| 1556 | #D- |
---|
| 1557 | function IGCM_sys_CountJobInQueue { |
---|
| 1558 | IGCM_debug_PushStack "IGCM_sys_CountJobInQueue" |
---|
| 1559 | if ( $DEBUG_sys ) ; then |
---|
| 1560 | echo "IGCM_sys_CountJobInQueue" |
---|
| 1561 | fi |
---|
| 1562 | |
---|
| 1563 | # Print only the full (-W) JobName (%jn) |
---|
| 1564 | NbRun=$( llq -W -f %jn | grep -c "$1" ) |
---|
| 1565 | |
---|
| 1566 | eval ${2}=${NbRun} |
---|
| 1567 | |
---|
| 1568 | IGCM_debug_PopStack "IGCM_sys_CountJobInQueue" |
---|
| 1569 | } |
---|
| 1570 | |
---|
[955] | 1571 | #D-#================================================== |
---|
| 1572 | #D-function IGCM_sys_ListJobInQueue |
---|
[1244] | 1573 | #D-* Purpose: Produce a list of users jobs |
---|
[955] | 1574 | #D-* Examples: IGCM_sys_ListJobInQueue ${User} JobNameList |
---|
| 1575 | #D- |
---|
| 1576 | function IGCM_sys_ListJobInQueue { |
---|
[1297] | 1577 | IGCM_debug_PushStack "IGCM_sys_ListJobInQueue" |
---|
[955] | 1578 | if ( $DEBUG_sys ) ; then |
---|
| 1579 | echo "IGCM_sys_ListJobInQueue" |
---|
| 1580 | fi |
---|
| 1581 | |
---|
[960] | 1582 | # With -W option, column width is as large as necessary |
---|
| 1583 | set -A JobList $( llq -u $1 -W -f %jn | head -n -2 | tail -n +3 | \ |
---|
[1305] | 1584 | gawk '( $1 != /TS/ && \ |
---|
[960] | 1585 | $1 !~ /PACK/ && \ |
---|
| 1586 | $1 !~ /REBUILD/ && \ |
---|
| 1587 | $1 !~ /pack/ ) \ |
---|
| 1588 | { print $1 }' | sed -e "s/\(.*\)\.[0-9]*/\1/" ) |
---|
[955] | 1589 | |
---|
| 1590 | eval set -A ${2} ${JobList[*]} |
---|
| 1591 | |
---|
| 1592 | IGCM_debug_PopStack "IGCM_sys_ListJobInQueue" |
---|
| 1593 | } |
---|
[1272] | 1594 | |
---|
| 1595 | #D-#================================================== |
---|
| 1596 | #D-function IGCM_sys_atlas |
---|
| 1597 | #D-* Purpose: encapsulate atlas call so as to manage error code and curie specificity |
---|
| 1598 | #D-* Examples: |
---|
| 1599 | #D- |
---|
| 1600 | function IGCM_sys_atlas { |
---|
| 1601 | IGCM_debug_PushStack "IGCM_sys_atlas" $@ |
---|
| 1602 | if ( $DEBUG_sys ) ; then |
---|
| 1603 | echo "IGCM_sys_atlas :" $@ |
---|
| 1604 | fi |
---|
| 1605 | |
---|
| 1606 | typeset status |
---|
| 1607 | |
---|
| 1608 | \atlas $@ > ${OUTCOMMAND_PATH}/out_command_${LOGIN}.$$ 2>&1 |
---|
| 1609 | status=$? |
---|
| 1610 | if [ ${status} -gt 0 ] ; then |
---|
| 1611 | echo "IGCM_sys_atlas : error code ${status}" |
---|
[1305] | 1612 | cat ${OUTCOMMAND_PATH}/out_command_${LOGIN}.$$ |
---|
| 1613 | \rm ${OUTCOMMAND_PATH}/out_command_${LOGIN}.$$ |
---|
| 1614 | IGCM_debug_PopStack "IGCM_sys_atlas" |
---|
| 1615 | return 1 |
---|
| 1616 | else |
---|
| 1617 | IGCM_debug_PopStack "IGCM_sys_atlas" |
---|
| 1618 | return 0 |
---|
| 1619 | fi |
---|
[1297] | 1620 | |
---|
[1305] | 1621 | IGCM_debug_PopStack "IGCM_sys_atlas" |
---|
| 1622 | } |
---|
[1297] | 1623 | |
---|
[1380] | 1624 | #D-#================================================== |
---|
| 1625 | #D-function IGCM_sys_rebuild_nemo |
---|
| 1626 | #D-* Purpose: rebuild nemo parallel files with general rebuild |
---|
| 1627 | #D-* Examples: |
---|
| 1628 | #D- |
---|
| 1629 | |
---|
| 1630 | function IGCM_sys_rebuild_nemo { |
---|
| 1631 | IGCM_debug_PushStack "IGCM_sys_rebuild_nemo" $@ |
---|
| 1632 | if ( $DEBUG_sys ) ; then |
---|
| 1633 | echo "IGCM_sys_rebuild_nemo :" $@ |
---|
| 1634 | fi |
---|
| 1635 | |
---|
| 1636 | nemo_generic_restart_file_name_out=${1} |
---|
| 1637 | nemo_extension_out=${3} |
---|
| 1638 | shift ; shift ; shift |
---|
| 1639 | |
---|
| 1640 | IGCM_sys_rebuild -o ${nemo_generic_restart_file_name_out}.${nemo_extension_out} $@ |
---|
| 1641 | |
---|
| 1642 | IGCM_debug_PopStack "IGCM_sys_rebuild_nemo" |
---|
| 1643 | } |
---|
| 1644 | |
---|
| 1645 | |
---|