1 | #!/bin/ksh |
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2 | |
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3 | #************************************************************** |
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4 | # Author: Sébastien Denvil |
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5 | # Contact: Sebastien.Denvil__at__ipsl.jussieu.fr |
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6 | # $Revision:: $ Revision of last commit |
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7 | # $Author:: $ Author of last commit |
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8 | # $Date:: $ Date of last commit |
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9 | # IPSL (2006) |
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10 | # This software is governed by the CeCILL licence see libIGCM/libIGCM_CeCILL.LIC |
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11 | # |
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12 | #************************************************************** |
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13 | |
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14 | #========================================================= |
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15 | # The documentation of this file can be automatically generated |
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16 | # if you use the prefix #D- for comments to be extracted. |
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17 | # Extract with command: cat lib* | grep "^#D-" | cut -c "4-" |
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18 | #========================================================= |
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19 | |
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20 | #D-#================================================== |
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21 | #D-LibIGCM_sys for Ada |
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22 | #D-#================================================== |
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23 | #D- |
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24 | #D- This ksh library if a layer under some usefull |
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25 | #D-environment variables and shell commands. |
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26 | #D-All those definitions depend on host particularities. |
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27 | #D-It manages a stack mechanism and test validity of operations. |
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28 | #D-All function described bellow must be prefixed by IGCM_sys. |
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29 | |
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30 | #==================================================== |
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31 | # libIGCM_sys PARAMETERS |
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32 | #==================================================== |
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33 | |
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34 | #==================================================== |
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35 | # set DEBUG_sys to true to output calls of function |
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36 | typeset -r DEBUG_sys=${DEBUG_sys:=true} |
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37 | |
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38 | #==================================================== |
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39 | # Turn in dry run mode ? (sys_Put_Rest, sys_Put_Out, sys_Get) |
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40 | typeset -r DRYRUN=${DRYRUN:=0} |
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41 | |
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42 | # YOU MUST COMPILE YOUR EXE FILES FOR DRYRUN MODE ! |
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43 | # ------------------------------------------------------------------------------------- |
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44 | # | DRYRUN= | Date computations, | sys_Get | Exe | sys_Put_Out; sys_Put_Rest | |
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45 | # | | Cp/Exe/param/files | | | | |
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46 | # | | Chmod Qsub | | | | |
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47 | # ------------------------------------------------------------------------------------- |
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48 | # | 0 | yes | yes | yes | yes | |
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49 | # ------------------------------------------------------------------------------------- |
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50 | # | 1 | yes | yes | yes | no | |
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51 | # ------------------------------------------------------------------------------------- |
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52 | # | 2 | yes | yes | no | no | |
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53 | # ------------------------------------------------------------------------------------- |
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54 | # | 3 | yes | no | no | no | |
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55 | # ------------------------------------------------------------------------------------- |
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56 | |
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57 | #===================================================== |
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58 | # Global Variables : |
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59 | #===================================================== |
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60 | # Language : "fr" or "en" |
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61 | typeset -r MYLANG="fr" |
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62 | |
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63 | #===================================================== |
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64 | # Host and user names |
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65 | # $hostname ou hostname |
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66 | typeset HOST=${HOST:=$( hostname )} |
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67 | # $username ou whoami |
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68 | typeset LOGIN=${LOGIN:=$( whoami )} |
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69 | # $hostname of the MASTER job |
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70 | typeset MASTER=ada |
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71 | |
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72 | #D- |
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73 | #D-#================================================== |
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74 | #D-Program used in libIGCM |
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75 | #D-#================================================== |
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76 | |
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77 | # Submit command |
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78 | typeset SUBMIT=${SUBMIT:=llsubmit} |
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79 | # rsync with path |
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80 | typeset -r RSYNC=/usr/bin/rsync |
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81 | # RSYNC_opt args to rsync |
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82 | typeset -r RSYNC_opt="-va" |
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83 | # ie storage filesystem |
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84 | typeset -r STOREHOST=gaya |
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85 | typeset -r REMOTE_RSYNC=/u/rech/ces/rces452/RSYNC/bin/rsync |
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86 | |
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87 | #==================================================== |
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88 | # Source default environment |
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89 | #==================================================== |
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90 | ##. /etc/profile |
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91 | |
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92 | #==================================================== |
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93 | # Set environment tools (ferret, nco, cdo) |
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94 | #==================================================== |
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95 | source /smplocal/pub/Modules/default/init/ksh |
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96 | . /smphome/rech/psl/rpsl035/.atlas_env_ada_bash |
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97 | export PATH=${PATH}:/smphome/rech/psl/rpsl035/AddNoise/src_X64_ADA/bin |
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98 | |
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99 | #==================================================== |
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100 | # Host specific DIRECTORIES |
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101 | #==================================================== |
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102 | |
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103 | #==================================================== |
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104 | #- MirrorlibIGCM for frontend |
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105 | typeset -r MirrorlibIGCM=${MirrorlibIGCM:=false} |
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106 | |
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107 | #==================================================== |
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108 | #- libIGCM_POST for frontend |
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109 | typeset -r libIGCM_POST=${libIGCM} |
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110 | |
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111 | #==================================================== |
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112 | #- R_EXE (==> BIN_DIR = ${MODIPSL}/bin ) |
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113 | typeset -r R_EXE="${MODIPSL}/bin" |
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114 | |
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115 | #==================================================== |
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116 | #- SUBMIT_DIR : submission dir |
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117 | typeset SUBMIT_DIR=${SUBMIT_DIR:=${LOADL_STEP_INITDIR}} |
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118 | |
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119 | #==================================================== |
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120 | #- IN |
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121 | typeset -r R_IN=${R_IN:=/workgpfs/rech/psl/rpsl035/IGCM} |
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122 | typeset -r R_IN_ECMWF=${R_IN_ECMWF:=/u/rech/psl/rpsl376} |
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123 | |
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124 | #==================================================== |
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125 | #- ARCHIVE (dedicated to large files) |
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126 | typeset ARCHIVE=$(echo ${HOME} | sed -e "s,/.*home/,/u/,") |
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127 | |
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128 | #==================================================== |
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129 | #- STORAGE (dedicated to small/medium files) |
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130 | typeset STORAGE=${WORKDIR} |
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131 | |
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132 | #==================================================== |
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133 | #- R_OUT |
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134 | typeset R_OUT=${ARCHIVE}/IGCM_OUT |
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135 | |
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136 | #==================================================== |
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137 | #- R_FIG (hosting figures : monitoring and atlas, and/or small files) |
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138 | typeset R_FIG=${ARCHIVE}/IGCM_OUT |
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139 | |
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140 | #==================================================== |
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141 | #- R_BUF (ONLY FOR double copy an scratch) |
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142 | typeset -r R_BUF=${WORKDIR}/IGCM_OUT |
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143 | |
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144 | #==================================================== |
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145 | #- RUN_DIR_PATH : Temporary working directory (=> TMP) |
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146 | typeset -r RUN_DIR_PATH=${RUN_DIR_PATH:=${TMPDIR}} |
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147 | |
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148 | #==================================================== |
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149 | #- HOST_MPIRUN_COMMAND |
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150 | typeset -r HOST_MPIRUN_COMMAND=${HOST_MPIRUN_COMMAND:="/usr/bin/time poe"} |
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151 | |
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152 | #==================================================== |
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153 | #- Max number of arguments passed to nco operator or demigration command |
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154 | UNIX_MAX_LIMIT=360 |
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155 | |
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156 | #==================================================== |
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157 | #- set PackDefault true on curie |
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158 | PackDefault=true |
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159 | |
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160 | #==================================================== |
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161 | #- Number of core per node (max number of OpenMP task) |
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162 | NUM_COREPERNODE=8 |
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163 | |
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164 | #==================================================== |
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165 | #- Default number of MPI task for IPSL coupled model |
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166 | #- required for backward compatibility |
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167 | #- |
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168 | DEFAULT_NUM_PROC_OCE=5 |
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169 | DEFAULT_NUM_PROC_CPL=1 |
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170 | (( DEFAULT_NUM_PROC_ATM = BATCH_NUM_PROC_TOT - DEFAULT_NUM_PROC_OCE - DEFAULT_NUM_PROC_CPL )) |
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171 | DEFAULT_NUM_PROC_TOTAL=${BATCH_NUM_PROC_TOT} |
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172 | |
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173 | #D-#================================================== |
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174 | #D-function IGCM_sys_ChangeArchive |
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175 | #D-* Purpose: if SpaceName=TEST everything is stored on SCRATCHDIR |
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176 | #D-* Examples: |
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177 | #D- |
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178 | function IGCM_sys_ChangeArchive { |
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179 | IGCM_debug_PushStack "IGCM_sys_ChangeArchive" |
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180 | |
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181 | R_OUT=${WORKDIR}/IGCM_OUT |
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182 | R_FIG=${WORKDIR}/IGCM_OUT |
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183 | |
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184 | IGCM_debug_Print 1 "R_OUT has been redefined = ${R_OUT}" |
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185 | IGCM_debug_Print 1 "R_FIG has been redefined = ${R_FIG}" |
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186 | |
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187 | IGCM_debug_PopStack "IGCM_sys_ChangeArchive" |
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188 | } |
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189 | |
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190 | #D-#================================================== |
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191 | #D-function IGCM_sys_RshMaster |
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192 | #D-* Purpose: Connection to frontend machine. |
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193 | #D-* Examples: |
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194 | #D- |
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195 | function IGCM_sys_RshMaster { |
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196 | IGCM_debug_PushStack "IGCM_sys_RshMaster" $@ |
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197 | /bin/ksh <<-EOF |
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198 | export libIGCM=${libIGCM} |
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199 | export DEBUG_debug=${DEBUG_debug} |
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200 | . ${libIGCM}/libIGCM_debug/libIGCM_debug.ksh |
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201 | . ${libIGCM}/libIGCM_card/libIGCM_card.ksh |
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202 | ${@} |
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203 | EOF |
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204 | if [ $? -gt 0 ] ; then |
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205 | echo "IGCM_sys_RshMaster : erreur." |
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206 | IGCM_debug_Exit "IGCM_sys_RshMaster" |
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207 | fi |
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208 | IGCM_debug_PopStack "IGCM_sys_RshMaster" |
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209 | } |
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210 | |
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211 | #D-#================================================== |
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212 | #D-function IGCM_sys_RshArchive |
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213 | #D-* Purpose: Archive rsh command |
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214 | #D-* Examples: |
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215 | #D- |
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216 | function IGCM_sys_RshArchive { |
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217 | IGCM_debug_PushStack "IGCM_sys_RshArchive" $@ |
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218 | DEBUG_sys=false IGCM_sys_IsFileArchived "$@" |
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219 | if [ $? = 0 ] ; then |
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220 | rsh ${STOREHOST} exec /bin/ksh <<-EOF |
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221 | ${@} |
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222 | EOF |
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223 | status=$? |
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224 | else |
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225 | /bin/ksh <<-EOF |
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226 | ${@} |
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227 | EOF |
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228 | status=$? |
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229 | fi |
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230 | if [ ${status} -gt 0 ] ; then |
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231 | IGCM_debug_Print 2 "IGCM_sys_RshArchive : rsh or command failed error code ${status}" |
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232 | IGCM_debug_Exit "IGCM_sys_RshArchive" |
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233 | fi |
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234 | IGCM_debug_PopStack "IGCM_sys_RshArchive" |
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235 | } |
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236 | |
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237 | #D-#================================================== |
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238 | #D-function IGCM_sys_RshArchive_NoError |
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239 | #D-* Purpose: Archive rsh command, without error |
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240 | #D-* used only in monitoring.job |
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241 | #D-* Examples: |
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242 | #D- |
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243 | function IGCM_sys_RshArchive_NoError { |
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244 | IGCM_debug_PushStack "IGCM_sys_RshArchive_NoError" $@ |
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245 | DEBUG_sys=false IGCM_sys_IsFileArchived "$@" |
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246 | if [ $? = 0 ] ; then |
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247 | rsh ${STOREHOST} exec /bin/ksh <<-EOF |
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248 | ${@} 2> /dev/null |
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249 | EOF |
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250 | else |
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251 | /bin/ksh <<-EOF |
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252 | ${@} 2> /dev/null |
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253 | EOF |
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254 | fi |
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255 | IGCM_debug_PopStack "IGCM_sys_RshArchive_NoError" |
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256 | } |
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257 | |
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258 | #D-#================================================== |
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259 | #D-function IGCM_sys_RshPost |
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260 | #D-* Purpose: Post-process rsh command |
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261 | #D-* Examples: |
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262 | #D- |
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263 | function IGCM_sys_RshPost { |
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264 | IGCM_debug_PushStack "IGCM_sys_RshPost" $@ |
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265 | if ( $DEBUG_sys ) ; then |
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266 | echo "IGCM_sys_RshPost :" $@ |
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267 | fi |
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268 | # keep standard input (stdin) for the loop onto temporary file |
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269 | cat >/tmp/tmp_IGCM_sys_RshPost_$$_${LOGNAME} |
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270 | |
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271 | /bin/ksh </tmp/tmp_IGCM_sys_RshPost_$$_${LOGNAME} |
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272 | if [ $? -gt 0 ] ; then |
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273 | echo "IGCM_sys_RshPost : erreur." |
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274 | IGCM_debug_Exit "IGCM_sys_RshPost" |
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275 | fi |
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276 | # delete temporary file |
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277 | \rm /tmp/tmp_IGCM_sys_RshPost_$$_${LOGNAME} |
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278 | |
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279 | IGCM_debug_PopStack "IGCM_sys_RshPost" |
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280 | } |
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281 | |
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282 | #D-#================================================== |
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283 | #D-function IGCM_sys_SendMail |
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284 | #D-* Purpose: Send mail when simulation is over |
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285 | #D-* Examples: |
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286 | #D- |
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287 | function IGCM_sys_SendMail { |
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288 | IGCM_debug_PushStack "IGCM_sys_SendMail" $@ |
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289 | if ( $DEBUG_sys ) ; then |
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290 | echo "IGCM_sys_SendMail :" $@ |
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291 | fi |
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292 | |
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293 | if [ X${1} = XAccounting ] ; then |
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294 | status=Accounting |
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295 | mailText=jobAccounting.mail |
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296 | elif ( ${ExitFlag} ) ; then |
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297 | status=failed |
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298 | mailText=jobEnd.mail |
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299 | else |
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300 | status=completed |
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301 | mailText=jobEnd.mail |
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302 | fi |
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303 | |
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304 | # Update selected mail template |
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305 | while read -r line; do |
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306 | eval echo $line >> mail.txt ; |
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307 | done < ${libIGCM}/libIGCM_sys/${mailText} |
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308 | |
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309 | if [ ! -z ${config_UserChoices_MailName} ] ; then |
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310 | mail -s "${config_UserChoices_JobName} ${status}" ${config_UserChoices_MailName} < mail.txt |
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311 | elif [ -f ~/.forward ] ; then |
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312 | mail -s "${config_UserChoices_JobName} ${status}" $( cat ~/.forward ) < mail.txt |
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313 | else |
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314 | mail -s "${config_UserChoices_JobName} ${status}" ${USER} < mail.txt |
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315 | fi |
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316 | |
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317 | sleep 10 |
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318 | rm -f mail.txt |
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319 | |
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320 | IGCM_debug_PopStack "IGCM_sys_SendMail" |
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321 | } |
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322 | |
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323 | #D-#================================================== |
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324 | #D-function IGCM_sys_Mkdir |
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325 | #D-* Purpose: Master locale mkdir command |
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326 | #D-* Examples: |
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327 | #D- |
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328 | function IGCM_sys_Mkdir { |
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329 | IGCM_debug_PushStack "IGCM_sys_Mkdir" $@ |
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330 | if ( $DEBUG_sys ) ; then |
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331 | echo "IGCM_sys_Mkdir :" $@ |
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332 | fi |
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333 | if [ ! -d ${1} ]; then |
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334 | \mkdir -p $1 |
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335 | if [ $? -gt 0 ] ; then |
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336 | echo "IGCM_sys_Mkdir : erreur." |
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337 | IGCM_debug_Exit "IGCM_sys_Mkdir" |
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338 | fi |
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339 | fi |
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340 | # vérification : |
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341 | if [ ! -d ${1} ] ; then |
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342 | echo "IGCM_sys_Mkdir : erreur." |
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343 | IGCM_debug_Exit "IGCM_sys_Mkdir" |
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344 | fi |
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345 | IGCM_debug_PopStack "IGCM_sys_Mkdir" |
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346 | } |
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347 | |
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348 | #D-#================================================== |
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349 | #D-function IGCM_sys_MkdirArchive |
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350 | #D-* Purpose: Mkdir on Archive |
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351 | #D-* Examples: |
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352 | #D- |
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353 | function IGCM_sys_MkdirArchive { |
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354 | IGCM_debug_PushStack "IGCM_sys_MkdirArchive" $@ |
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355 | if ( $DEBUG_sys ) ; then |
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356 | echo "IGCM_sys_MkdirArchive :" $@ |
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357 | fi |
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358 | #- creation de repertoire sur le serveur fichier |
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359 | DEBUG_sys=false IGCM_sys_IsFileArchived $1 |
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360 | if [ $? = 0 ] ; then |
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361 | rsh ${STOREHOST} -n mkdir -p $1 |
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362 | status=$? |
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363 | else |
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364 | mkdir -p $1 |
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365 | status=$? |
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366 | fi |
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367 | |
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368 | if [ ${status} -gt 0 ] ; then |
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369 | IGCM_debug_Print 2 "IGCM_sys_MkdirArchive : rsh or mkdir failed error code ${status}" |
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370 | IGCM_debug_Exit "IGCM_sys_MkdirArchive" |
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371 | fi |
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372 | IGCM_debug_PopStack "IGCM_sys_MkdirArchive" |
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373 | } |
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374 | |
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375 | #D-#================================================== |
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376 | #D-function IGCM_sys_MkdirWork |
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377 | #D-* Purpose: Mkdir on Work |
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378 | #D-* Examples: |
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379 | #D- |
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380 | function IGCM_sys_MkdirWork { |
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381 | IGCM_debug_PushStack "IGCM_sys_MkdirWork" $@ |
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382 | if ( $DEBUG_sys ) ; then |
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383 | echo "IGCM_sys_MkdirWork :" $@ |
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384 | fi |
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385 | #- creation de repertoire sur le serveur fichier |
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386 | if [ ! -d ${1} ]; then |
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387 | \mkdir -p $1 |
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388 | if [ $? -gt 0 ] ; then |
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389 | echo "IGCM_sys_MkdirWork : erreur." |
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390 | IGCM_debug_Exit "IGCM_sys_MkdirWork" |
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391 | fi |
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392 | fi |
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393 | IGCM_debug_PopStack "IGCM_sys_MkdirWork" |
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394 | } |
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395 | |
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396 | #D-#================================================== |
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397 | #D-function IGCM_sys_Cd |
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398 | #D-* Purpose: master cd command |
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399 | #D-* Examples: |
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400 | #D- |
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401 | function IGCM_sys_Cd { |
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402 | IGCM_debug_PushStack "IGCM_sys_Cd" $@ |
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403 | if ( $DEBUG_sys ) ; then |
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404 | echo "IGCM_sys_Cd :" $@ |
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405 | fi |
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406 | \cd $1 |
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407 | if [ $? -gt 0 ] ; then |
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408 | echo "IGCM_sys_Cd : erreur." |
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409 | IGCM_debug_Exit "IGCM_sys_Cd" |
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410 | fi |
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411 | IGCM_debug_PopStack "IGCM_sys_Cd" |
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412 | } |
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413 | |
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414 | #D-#================================================== |
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415 | #D-function IGCM_sys_Chmod |
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416 | #D-* Purpose: Chmod |
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417 | #D-* Examples: |
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418 | #D- |
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419 | function IGCM_sys_Chmod { |
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420 | IGCM_debug_PushStack "IGCM_sys_Chmod" -- $@ |
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421 | if ( $DEBUG_sys ) ; then |
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422 | echo "IGCM_sys_Chmod :" $@ |
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423 | fi |
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424 | \chmod $@ |
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425 | if [ $? -gt 0 ] ; then |
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426 | echo "IGCM_sys_Chmod : erreur." |
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427 | IGCM_debug_Exit "IGCM_sys_Chmod" |
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428 | fi |
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429 | IGCM_debug_PopStack "IGCM_sys_Chmod" |
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430 | } |
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431 | |
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432 | #D-#================================================== |
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433 | #D-function IGCM_sys_FileSize |
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434 | #D-* Purpose: Filesize |
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435 | #D-* Examples: |
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436 | #D- |
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437 | function IGCM_sys_FileSize { |
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438 | IGCM_debug_PushStack "IGCM_sys_FileSize" $@ |
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439 | |
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440 | typeset sizeF |
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441 | set +A sizeF -- $( ls -la ${1} ) |
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442 | if [ $? -gt 0 ] ; then |
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443 | IGCM_debug_Exit "IGCM_sys_FileSize" |
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444 | fi |
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445 | eval ${2}=${sizeF[4]} |
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446 | |
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447 | IGCM_debug_PopStack "IGCM_sys_FileSize" |
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448 | } |
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449 | |
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450 | #D-#================================================== |
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451 | #D-function IGCM_sys_TestDir |
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452 | #D-* Purpose: Test Directory that must exists |
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453 | #D-* Examples: |
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454 | #D- |
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455 | function IGCM_sys_TestDir { |
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456 | IGCM_debug_PushStack "IGCM_sys_TestDir" $@ |
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457 | if ( $DEBUG_sys ) ; then |
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458 | echo "IGCM_sys_TestDir :" $@ |
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459 | fi |
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460 | typeset ExistFlag |
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461 | ExistFlag=$( [ -d $1 ] && echo 0 || echo 1 ) |
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462 | IGCM_debug_PopStack "IGCM_sys_TestDir" |
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463 | |
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464 | return ${ExistFlag} |
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465 | } |
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466 | |
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467 | #D-#================================================== |
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468 | #D-function IGCM_sys_TestDirArchive |
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469 | #D-* Purpose: Test Directory that must exists on Archive |
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470 | #D-* Examples: |
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471 | #D- |
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472 | function IGCM_sys_TestDirArchive { |
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473 | IGCM_debug_PushStack "IGCM_sys_TestDirArchive" $@ |
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474 | if ( $DEBUG_sys ) ; then |
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475 | echo "IGCM_sys_TestDirArchive :" $@ |
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476 | fi |
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477 | typeset ExistFlag |
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478 | #Command depends on targeted file system |
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479 | DEBUG_sys=false IGCM_sys_IsFileArchived $1 |
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480 | if [ $? = 0 ] ; then |
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481 | ExistFlag=$( IGCM_sys_RshArchive "[ -d $1 ] && echo 0 || echo 1" ) |
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482 | else |
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483 | ExistFlag=$( [ -d $1 ] && echo 0 || echo 1 ) |
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484 | fi |
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485 | IGCM_debug_PopStack "IGCM_sys_TestDirArchive" |
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486 | return ${ExistFlag} |
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487 | } |
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488 | |
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489 | #D-#================================================== |
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490 | #D-function IGCM_sys_IsFileArchived |
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491 | #D-* Purpose: Test file that must NOT EXISTS on Archive |
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492 | #D-* Examples: |
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493 | #D- |
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494 | function IGCM_sys_IsFileArchived { |
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495 | IGCM_debug_PushStack "IGCM_sys_IsFileArchived" $@ |
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496 | if ( $DEBUG_sys ) ; then |
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497 | echo "IGCM_sys_IsFileArchived :" $@ |
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498 | fi |
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499 | typeset IsArchivedFlag |
---|
500 | IsArchivedFlag=$( [ "X$( echo $@ | grep \/u\/rech )" != "X" ] && echo 0 || echo 1 ) |
---|
501 | IGCM_debug_PopStack "IGCM_sys_IsFileArchived" |
---|
502 | |
---|
503 | return ${IsArchivedFlag} |
---|
504 | } |
---|
505 | |
---|
506 | #D-#================================================== |
---|
507 | #D-function IGCM_sys_TestFileArchive |
---|
508 | #D-* Purpose: Test file that must NOT EXISTS on Archive |
---|
509 | #D-* Examples: |
---|
510 | #D- |
---|
511 | function IGCM_sys_TestFileArchive { |
---|
512 | IGCM_debug_PushStack "IGCM_sys_TestFileArchive" $@ |
---|
513 | typeset ExistFlag |
---|
514 | #Command depends on targeted file system |
---|
515 | #We want it quiet |
---|
516 | DEBUG_sys=false IGCM_sys_IsFileArchived $1 |
---|
517 | if [ $? = 0 ] ; then |
---|
518 | ExistFlag=$( IGCM_sys_RshArchive "[ -f $1 ] && echo 0 || echo 1" ) |
---|
519 | else |
---|
520 | ExistFlag=$( [ -f $1 ] && echo 0 || echo 1 ) |
---|
521 | fi |
---|
522 | IGCM_debug_PopStack "IGCM_sys_TestFileArchive" |
---|
523 | |
---|
524 | return ${ExistFlag} |
---|
525 | } |
---|
526 | |
---|
527 | #D-#================================================== |
---|
528 | #D-function IGCM_sys_TestFileBuffer |
---|
529 | #D-* Purpose: Test file that must NOT EXISTS on Buffer |
---|
530 | #D-* Examples: |
---|
531 | #D- |
---|
532 | function IGCM_sys_TestFileBuffer { |
---|
533 | IGCM_debug_PushStack "IGCM_sys_TestFileBuffer" $@ |
---|
534 | typeset ExistFlag |
---|
535 | ExistFlag=$( [ -f $1 ] && echo 0 || echo 1 ) |
---|
536 | IGCM_debug_PopStack "IGCM_sys_TestFileBuffer" |
---|
537 | |
---|
538 | return ${ExistFlag} |
---|
539 | } |
---|
540 | |
---|
541 | #D-#================================================== |
---|
542 | #D-function IGCM_sys_CountFileArchive |
---|
543 | #D-* Purpose: Count files on Archive filesystem |
---|
544 | #D-* Examples: |
---|
545 | #D- |
---|
546 | function IGCM_sys_CountFileArchive { |
---|
547 | IGCM_debug_PushStack "IGCM_sys_CountFileArchive" $@ |
---|
548 | #Command depends on targeted file system |
---|
549 | DEBUG_sys=false IGCM_sys_IsFileArchived $1 |
---|
550 | if [ $? = 0 ] ; then |
---|
551 | IGCM_sys_RshArchive "ls ${@} 2>/dev/null | wc -l" |
---|
552 | status=$? |
---|
553 | else |
---|
554 | ls ${@} 2>/dev/null | wc -l |
---|
555 | status=$? |
---|
556 | fi |
---|
557 | if [ ${status} -gt 0 ] ; then |
---|
558 | echo "IGCM_sys_CountFileArchive : erreur." |
---|
559 | fi |
---|
560 | IGCM_debug_PopStack "IGCM_sys_CountFileArchive" |
---|
561 | } |
---|
562 | |
---|
563 | #D-#================================================== |
---|
564 | #D-function IGCM_sys_CountFileBuffer |
---|
565 | #D-* Purpose: Count files on Scratch filesystem |
---|
566 | #D-* Examples: |
---|
567 | #D- |
---|
568 | function IGCM_sys_CountFileBuffer { |
---|
569 | IGCM_debug_PushStack "IGCM_sys_CountFileBuffer" $@ |
---|
570 | ls ${@} 2>/dev/null | wc -l |
---|
571 | if [ $? -gt 0 ] ; then |
---|
572 | echo "IGCM_sys_CountFileBuffer : erreur." |
---|
573 | fi |
---|
574 | IGCM_debug_PopStack "IGCM_sys_CountFileBuffer" |
---|
575 | } |
---|
576 | |
---|
577 | #D-#================================================== |
---|
578 | #D-function IGCM_sys_Tree |
---|
579 | #D-* Purpose: Tree directories with files on ${ARCHIVE} |
---|
580 | #D-* Examples: IGCM_sys_Tree ${R_IN} ${R_OUT} |
---|
581 | #D- |
---|
582 | function IGCM_sys_Tree { |
---|
583 | IGCM_debug_PushStack "IGCM_sys_Tree" $@ |
---|
584 | if ( $DEBUG_sys ) ; then |
---|
585 | echo "IGCM_sys_Tree :" $@ |
---|
586 | fi |
---|
587 | |
---|
588 | \mfls -r $@ |
---|
589 | |
---|
590 | IGCM_debug_PopStack "IGCM_sys_Tree" |
---|
591 | } |
---|
592 | |
---|
593 | #D-#================================================== |
---|
594 | #D-function IGCM_sys_Tar |
---|
595 | #D-* Purpose: master tar command |
---|
596 | #D-* Examples: |
---|
597 | #D- |
---|
598 | function IGCM_sys_Tar { |
---|
599 | IGCM_debug_PushStack "IGCM_sys_Tar" $@ |
---|
600 | if ( $DEBUG_sys ) ; then |
---|
601 | echo "IGCM_sys_Tar :" $@ |
---|
602 | fi |
---|
603 | \tar cf $@ |
---|
604 | if [ $? -gt 0 ] ; then |
---|
605 | echo "IGCM_sys_Tar : erreur." |
---|
606 | IGCM_debug_Exit "IGCM_sys_Tar" |
---|
607 | fi |
---|
608 | IGCM_debug_PopStack "IGCM_sys_Tar" |
---|
609 | } |
---|
610 | |
---|
611 | #D-#================================================== |
---|
612 | #D-function IGCM_sys_UnTar |
---|
613 | #D-* Purpose: master un-tar command |
---|
614 | #D-* Examples: |
---|
615 | #D- |
---|
616 | function IGCM_sys_UnTar { |
---|
617 | IGCM_debug_PushStack "IGCM_sys_UnTar" $@ |
---|
618 | if ( $DEBUG_sys ) ; then |
---|
619 | echo "IGCM_sys_UnTar :" $@ |
---|
620 | fi |
---|
621 | \tar xvf $1 |
---|
622 | if [ $? -gt 0 ] ; then |
---|
623 | echo "IGCM_sys_UnTar : erreur." |
---|
624 | IGCM_debug_Exit "IGCM_sys_UnTar" |
---|
625 | fi |
---|
626 | IGCM_debug_PopStack "IGCM_sys_UnTar" |
---|
627 | } |
---|
628 | |
---|
629 | #D-#================================================== |
---|
630 | #D-function IGCM_sys_Qsub |
---|
631 | #D-* Purpose: Qsub new job |
---|
632 | #D-* Examples: |
---|
633 | #D- |
---|
634 | function IGCM_sys_Qsub { |
---|
635 | IGCM_debug_PushStack "IGCM_sys_Qsub" $@ |
---|
636 | |
---|
637 | typeset status |
---|
638 | |
---|
639 | if ( $DEBUG_sys ) ; then |
---|
640 | echo "IGCM_sys_Qsub :" $@ |
---|
641 | fi |
---|
642 | # We have to change output/error file |
---|
643 | [ ${#@} = 1 ] && REP_FOR_JOB=${SUBMIT_DIR} |
---|
644 | [ ${#@} = 2 ] && REP_FOR_JOB=${2} |
---|
645 | sed -e "s:\# \@ output *= .*:\# \@ output = ${Script_Output}:" \ |
---|
646 | -e "s:\# \@ error *= .*:\# \@ error = ${Script_Output}:" \ |
---|
647 | $1 > ${REP_FOR_JOB}/JOB_FOR_IGCM |
---|
648 | cd $REP_FOR_JOB ; /usr/bin/llsubmit JOB_FOR_IGCM > /tmp/out_command.$$ 2>&1 ; status=$? ; cd - ; |
---|
649 | |
---|
650 | cat /tmp/out_command.$$ |
---|
651 | if [ ${status} -gt 0 ] ; then |
---|
652 | IGCM_debug_Print 2 "IGCM_sys_Qsub $1 : error code ${status}" |
---|
653 | IGCM_debug_Exit "IGCM_sys_Qsub" |
---|
654 | else |
---|
655 | JobID=$( gawk {'print $4'} /tmp/out_command.$$ | tail -1 | sed -e s/\"//g ) |
---|
656 | IGCM_sys_Rm ${REP_FOR_JOB}/JOB_FOR_IGCM |
---|
657 | fi |
---|
658 | IGCM_debug_PopStack "IGCM_sys_Qsub" |
---|
659 | } |
---|
660 | |
---|
661 | #D-#================================================== |
---|
662 | #D-function IGCM_sys_QsubPost |
---|
663 | #D-* Purpose: Qsub new job on scalaire |
---|
664 | #D-* Examples: |
---|
665 | #D- |
---|
666 | function IGCM_sys_QsubPost { |
---|
667 | IGCM_debug_PushStack "IGCM_sys_QsubPost" $@ |
---|
668 | |
---|
669 | typeset status |
---|
670 | |
---|
671 | if ( $DEBUG_sys ) ; then |
---|
672 | echo "IGCM_sys_QsubPost :" $@ |
---|
673 | fi |
---|
674 | # We have to change output/error file |
---|
675 | [ ${#@} = 1 ] && REP_FOR_JOB=${POST_DIR} |
---|
676 | [ ${#@} = 2 ] && REP_FOR_JOB=${2} |
---|
677 | |
---|
678 | sed -e "s:\# \@ output *= .*:\# \@ output = ${Script_Post_Output}.out:" \ |
---|
679 | -e "s:\# \@ error *= .*:\# \@ error = ${Script_Post_Output}.out:" \ |
---|
680 | ${libIGCM_POST}/$1.job > ${REP_FOR_JOB}/JOB_FOR_IGCM_$$ |
---|
681 | |
---|
682 | cd $REP_FOR_JOB ; /usr/bin/llsubmit JOB_FOR_IGCM_$$ > /tmp/out_command.$$ 2>&1 ; status=$? ; cd - ; |
---|
683 | |
---|
684 | cat /tmp/out_command.$$ |
---|
685 | if [ ${status} -gt 0 ] ; then |
---|
686 | IGCM_debug_Print 2 "IGCM_sys_QsubPost $1 : error code ${status}" |
---|
687 | IGCM_debug_Exit "IGCM_sys_QsubPost" |
---|
688 | else |
---|
689 | JobID=$( gawk {'print $4'} /tmp/out_command.$$ | tail -1 | sed -e s/\"//g ) |
---|
690 | IGCM_sys_Rm ${REP_FOR_JOB}/JOB_FOR_IGCM_$$ |
---|
691 | fi |
---|
692 | IGCM_debug_PopStack "IGCM_sys_QsubPost" |
---|
693 | } |
---|
694 | |
---|
695 | #D-************************* |
---|
696 | #D- File transfer functions |
---|
697 | #D-************************* |
---|
698 | #D- |
---|
699 | |
---|
700 | #D-#================================================== |
---|
701 | #D-function IGCM_sys_Rsync_out |
---|
702 | #D-* Purpose: treat return val of rsync |
---|
703 | #D-* Examples: IGCM_sys_Rsync_out out_RET_rsync |
---|
704 | #D- Error values and explanations can depend on your system version. |
---|
705 | function IGCM_sys_Rsync_out { |
---|
706 | status=$1 |
---|
707 | if [ ! $status ] ; then |
---|
708 | echo "rsync error !" |
---|
709 | fi |
---|
710 | |
---|
711 | if [ $MYLANG = "fr" ]; then |
---|
712 | case $status in |
---|
713 | 0) return ;; |
---|
714 | 1) echo "Erreur de rsync ; RERR_SYNTAX : " |
---|
715 | echo "Erreur de syntaxe ou d'utilisation." |
---|
716 | return;; |
---|
717 | 2) echo "Erreur de rsync ; RERR_PROTOCOL : " |
---|
718 | echo "Incompatibilité de protocole." |
---|
719 | return;; |
---|
720 | 3) echo "Erreur de rsync ; RERR_FILESELECT 3" |
---|
721 | echo "Erreurs lors de la sélection des fichiers d'entrée sortie et" |
---|
722 | echo "répertoires" |
---|
723 | return;; |
---|
724 | 4) echo "Erreur de rsync ; RERR_UNSUPPORTED" |
---|
725 | echo "Action demandée non supportée : une tentative de manipulation de" |
---|
726 | echo "fichiers 64-bits sur une plate-forme qui ne les supporte pas a" |
---|
727 | echo "été faite ; ou une option qui est supportée par le client mais" |
---|
728 | echo "pas par le serveur a été spécifiée." |
---|
729 | return;; |
---|
730 | 10) echo "Erreur de rsync ; RERR_SOCKETIO" |
---|
731 | echo "Erreur dans le socket d'entrée sortie" |
---|
732 | return;; |
---|
733 | 11) echo "Erreur de rsync ; RERR_FILEIO" |
---|
734 | echo "Erreur d'entrée sortie fichier" |
---|
735 | return;; |
---|
736 | 12) echo "Erreur de rsync ; RERR_STREAMIO" |
---|
737 | echo "Erreur dans flux de donnée du protocole rsync" |
---|
738 | return;; |
---|
739 | 13) echo "Erreur de rsync ; RERR_MESSAGEIO" |
---|
740 | echo "Erreur avec les diagnostics du programme" |
---|
741 | return;; |
---|
742 | 14) echo "Erreur de rsync ; RERR_IPC" |
---|
743 | echo "Erreur dans le code IPC" |
---|
744 | return;; |
---|
745 | 20) echo "Erreur de rsync ; RERR_SIGNAL" |
---|
746 | echo "SIGUSR1 ou SIGINT reçu" |
---|
747 | return;; |
---|
748 | 21) echo "Erreur de rsync ; RERR_WAITCHILD" |
---|
749 | echo "Une erreur retournée par waitpid()" |
---|
750 | return;; |
---|
751 | 22) echo "Erreur de rsync ; RERR_MALLOC" |
---|
752 | echo "Erreur lors de l'allocation des tampons de mémoire de coeur" |
---|
753 | return;; |
---|
754 | 23) echo "" |
---|
755 | echo "Erreur fichier inexistant" |
---|
756 | return;; |
---|
757 | 30) echo "Erreur de rsync ; RERR_TIMEOUT" |
---|
758 | echo "Temps d'attente écoulé dans l'envoi/réception de données" |
---|
759 | return;; |
---|
760 | *) echo "Erreur de rsync : code de retour de rsync inconnu :" $status |
---|
761 | return;; |
---|
762 | esac |
---|
763 | elif [ $MYLANG = "en" ] ; then |
---|
764 | case $status in |
---|
765 | 0) return;; |
---|
766 | 1) echo "rsync error : Syntax or usage error " |
---|
767 | return;; |
---|
768 | 2) echo "rsync error : Protocol incompatibility " |
---|
769 | return;; |
---|
770 | 3) echo "rsync error : Errors selecting input/output files, dirs" |
---|
771 | return;; |
---|
772 | 4) echo "rsync error : Requested action not supported: an attempt" |
---|
773 | echo "was made to manipulate 64-bit files on a platform that cannot support" |
---|
774 | echo "them; or an option was specified that is supported by the client and" |
---|
775 | echo "not by the server." |
---|
776 | return;; |
---|
777 | 5) echo "rsync error : Error starting client-server protocol" |
---|
778 | return;; |
---|
779 | 10) echo "rsync error : Error in socket I/O " |
---|
780 | return;; |
---|
781 | 11) echo "rsync error : Error in file I/O " |
---|
782 | return;; |
---|
783 | 12) echo "rsync error : Error in rsync protocol data stream " |
---|
784 | return;; |
---|
785 | 13) echo "rsync error : Errors with program diagnostics " |
---|
786 | return;; |
---|
787 | 14) echo "rsync error : Error in IPC code " |
---|
788 | return;; |
---|
789 | 20) echo "rsync error : Received SIGUSR1 or SIGINT " |
---|
790 | return;; |
---|
791 | 21) echo "rsync error : Some error returned by waitpid() " |
---|
792 | return;; |
---|
793 | 22) echo "rsync error : Error allocating core memory buffers " |
---|
794 | return;; |
---|
795 | 23) echo "rsync error : Partial transfer due to error" |
---|
796 | return;; |
---|
797 | 24) echo "rsync error : Partial transfer due to vanished source files" |
---|
798 | return;; |
---|
799 | 30) echo "rsync error : Timeout in data send/receive " |
---|
800 | return;; |
---|
801 | *) echo "rsync error : return code of rsync unknown :" $status |
---|
802 | return;; |
---|
803 | esac |
---|
804 | else |
---|
805 | echo "unknown language $MYLANG." |
---|
806 | return |
---|
807 | fi |
---|
808 | } |
---|
809 | |
---|
810 | #D-#================================================== |
---|
811 | #D-function IGCM_sys_Miror_libIGCM |
---|
812 | #D-* Purpose: Mirror libIGCM PATH and lib to frontend |
---|
813 | #D-* Examples: |
---|
814 | #D- |
---|
815 | function IGCM_sys_Mirror_libIGCM { |
---|
816 | IGCM_debug_PushStack "IGCM_sys_Mirror_libIGCM" |
---|
817 | if ( $DEBUG_sys ) ; then |
---|
818 | echo "IGCM_sys_Mirror_libIGCM" |
---|
819 | fi |
---|
820 | |
---|
821 | typeset status |
---|
822 | |
---|
823 | mkdir -p ${HOME}/MIRROR/${PATHlibIGCM} |
---|
824 | |
---|
825 | echo ${RSYNC} ${RSYNC_opt} ${libIGCM} ${HOME}/MIRROR/${PATHlibIGCM} > /tmp/out_command.$$ 2>&1 |
---|
826 | ${RSYNC} ${RSYNC_opt} ${libIGCM} ${HOME}/MIRROR/${PATHlibIGCM} >> /tmp/out_command.$$ 2>&1 |
---|
827 | status=$? |
---|
828 | |
---|
829 | if [ ${status} -gt 0 ] ; then |
---|
830 | echo "IGCM_sys_Mirror_libIGCM Warning : no libIGCM on frontend." |
---|
831 | cat /tmp/out_command.$$ |
---|
832 | fi |
---|
833 | IGCM_debug_PopStack "IGCM_sys_Mirror_libIGCM" |
---|
834 | } |
---|
835 | |
---|
836 | #D-#================================================== |
---|
837 | #D-function IGCM_sys_Cp |
---|
838 | #D-* Purpose: generic cp |
---|
839 | #D-* Examples: |
---|
840 | #D- |
---|
841 | function IGCM_sys_Cp { |
---|
842 | IGCM_debug_PushStack "IGCM_sys_Cp" $@ |
---|
843 | if ( $DEBUG_sys ) ; then |
---|
844 | echo "IGCM_sys_Cp :" $@ |
---|
845 | fi |
---|
846 | |
---|
847 | typeset status |
---|
848 | |
---|
849 | echo cp $@ > /tmp/out_command.$$ 2>&1 |
---|
850 | \cp $@ >> /tmp/out_command.$$ 2>&1 |
---|
851 | status=$? |
---|
852 | |
---|
853 | if [ ${status} -gt 0 ] ; then |
---|
854 | echo "IGCM_sys_Cp : error code ${status}" |
---|
855 | cat /tmp/out_command.$$ |
---|
856 | IGCM_debug_Exit "IGCM_sys_Cp" |
---|
857 | else |
---|
858 | \rm /tmp/out_command.$$ |
---|
859 | fi |
---|
860 | IGCM_debug_PopStack "IGCM_sys_Cp" |
---|
861 | } |
---|
862 | |
---|
863 | #D-#================================================== |
---|
864 | #D-function IGCM_sys_Rm |
---|
865 | #D-* Purpose: generic rm |
---|
866 | #D-* Examples: |
---|
867 | #D- |
---|
868 | function IGCM_sys_Rm { |
---|
869 | IGCM_debug_PushStack "IGCM_sys_Rm" -- $@ |
---|
870 | if ( $DEBUG_sys ) ; then |
---|
871 | echo "IGCM_sys_Rm :" $@ |
---|
872 | fi |
---|
873 | |
---|
874 | typeset status |
---|
875 | |
---|
876 | echo rm $@ > /tmp/out_command.$$ 2>&1 |
---|
877 | \rm $@ >> /tmp/out_command.$$ 2>&1 |
---|
878 | status=$? |
---|
879 | |
---|
880 | if [ ${status} -gt 0 ] ; then |
---|
881 | echo "IGCM_sys_Rm : error code ${status}" |
---|
882 | cat /tmp/out_command.$$ |
---|
883 | IGCM_debug_Exit "IGCM_sys_Rm" |
---|
884 | else |
---|
885 | \rm /tmp/out_command.$$ |
---|
886 | fi |
---|
887 | IGCM_debug_PopStack "IGCM_sys_Rm" |
---|
888 | } |
---|
889 | |
---|
890 | #D-#================================================== |
---|
891 | #D-function IGCM_sys_RmRunDir |
---|
892 | #D-* Purpose: rm tmpdir (dummy function most of the time batch |
---|
893 | #D- scheduler will do the job) |
---|
894 | #D-* Examples: |
---|
895 | #D- |
---|
896 | function IGCM_sys_RmRunDir { |
---|
897 | IGCM_debug_PushStack "IGCM_sys_RmRunDir" -- $@ |
---|
898 | if ( $DEBUG_sys ) ; then |
---|
899 | echo "IGCM_sys_RmRunDir :" $@ |
---|
900 | echo "Dummy call, let the scheduler do that." |
---|
901 | fi |
---|
902 | IGCM_debug_PopStack "IGCM_sys_RmRunDir" |
---|
903 | } |
---|
904 | |
---|
905 | #D-#================================================== |
---|
906 | #D-function IGCM_sys_Mv |
---|
907 | #D-* Purpose: generic move |
---|
908 | #D-* Examples: |
---|
909 | #D- |
---|
910 | function IGCM_sys_Mv { |
---|
911 | IGCM_debug_PushStack "IGCM_sys_Mv" $@ |
---|
912 | if ( $DEBUG_sys ) ; then |
---|
913 | echo "IGCM_sys_Mv :" $@ |
---|
914 | fi |
---|
915 | |
---|
916 | if [ $DRYRUN = 0 ]; then |
---|
917 | |
---|
918 | typeset status |
---|
919 | |
---|
920 | echo mv $@ > /tmp/out_command.$$ 2>&1 |
---|
921 | \mv $@ >> /tmp/out_command.$$ 2>&1 |
---|
922 | status=$? |
---|
923 | |
---|
924 | if [ ${status} -gt 0 ] ; then |
---|
925 | echo "IGCM_sys_Mv : error code ${status}" |
---|
926 | cat /tmp/out_command.$$ |
---|
927 | IGCM_debug_Exit "IGCM_sys_Mv" |
---|
928 | else |
---|
929 | \rm /tmp/out_command.$$ |
---|
930 | fi |
---|
931 | fi |
---|
932 | |
---|
933 | IGCM_debug_PopStack "IGCM_sys_Mv" |
---|
934 | } |
---|
935 | |
---|
936 | #D-#================================================== |
---|
937 | #D-function IGCM_sys_Put_Dir |
---|
938 | #D-* Purpose: Copy a complete directory on $(ARCHIVE) |
---|
939 | #D-* Examples: |
---|
940 | #D- |
---|
941 | function IGCM_sys_Put_Dir { |
---|
942 | IGCM_debug_PushStack "IGCM_sys_Put_Dir" $@ |
---|
943 | if ( $DEBUG_sys ) ; then |
---|
944 | echo "IGCM_sys_Put_Dir :" $@ |
---|
945 | fi |
---|
946 | if [ $DRYRUN = 0 ]; then |
---|
947 | if [ ! -d ${1} ] ; then |
---|
948 | echo "WARNING : IGCM_sys_Put_Dir ${1} DOES NOT EXIST ." |
---|
949 | IGCM_debug_PopStack "IGCM_sys_Put_Dir" |
---|
950 | return |
---|
951 | fi |
---|
952 | |
---|
953 | typeset status |
---|
954 | |
---|
955 | # Only if we use rsync |
---|
956 | #IGCM_sys_TestDirArchive $( dirname $2 ) |
---|
957 | # |
---|
958 | #Command depends on targeted file system |
---|
959 | DEBUG_sys=false IGCM_sys_IsFileArchived $2 |
---|
960 | if [ $? = 0 ] ; then |
---|
961 | \rcp -r $1 ${STOREHOST}:$2 > /tmp/out_command.$$ 2>&1 |
---|
962 | status=$? |
---|
963 | else |
---|
964 | \cp -r $1 $2 > /tmp/out_command.$$ 2>&1 |
---|
965 | status=$? |
---|
966 | fi |
---|
967 | |
---|
968 | if [ ${status} -gt 0 ] ; then |
---|
969 | IGCM_debug_Print 2 "IGCM_sys_Put_Dir : rcp or cp failed error code ${status}" |
---|
970 | cat /tmp/out_command.$$ |
---|
971 | IGCM_debug_Exit "IGCM_sys_Put_Dir" |
---|
972 | else |
---|
973 | \rm /tmp/out_command.$$ |
---|
974 | fi |
---|
975 | fi |
---|
976 | IGCM_debug_PopStack "IGCM_sys_Put_Dir" |
---|
977 | } |
---|
978 | |
---|
979 | #D-#================================================== |
---|
980 | #D-function IGCM_sys_Get_Dir |
---|
981 | #D-* Purpose: Copy a complete directory from ${ARCHIVE} |
---|
982 | #D-* Examples: |
---|
983 | #D- |
---|
984 | function IGCM_sys_Get_Dir { |
---|
985 | IGCM_debug_PushStack "IGCM_sys_Get_Dir" $@ |
---|
986 | if ( $DEBUG_sys ) ; then |
---|
987 | echo "IGCM_sys_Get_Dir :" $@ |
---|
988 | fi |
---|
989 | if [ $DRYRUN = 0 ]; then |
---|
990 | # if [ ! -d ${1} ] ; then |
---|
991 | # echo "WARNING : IGCM_sys_Get_Dir ${1} DOES NOT EXIST ." |
---|
992 | # IGCM_debug_PopStack "IGCM_sys_Get_Dir" |
---|
993 | # return |
---|
994 | # fi |
---|
995 | |
---|
996 | typeset NB_ESSAI DELAI status i |
---|
997 | # number of tentative |
---|
998 | NB_ESSAI=3 |
---|
999 | # time delay between tentative |
---|
1000 | DELAI=2 |
---|
1001 | |
---|
1002 | # Only if we use rsync |
---|
1003 | #IGCM_sys_TestDirArchive $( dirname $2 ) |
---|
1004 | # |
---|
1005 | # Command depends on targeted filesystem |
---|
1006 | DEBUG_sys=false IGCM_sys_IsFileArchived $1 |
---|
1007 | if [ $? = 0 ] ; then |
---|
1008 | # add dmget (to demigrate all offline files) to reduce time of this command : |
---|
1009 | IGCM_sys_RshArchive "dmfind $1 -state MIG -o -state OFL -o -state PAR | dmget -q -n" |
---|
1010 | i=0 |
---|
1011 | while [ $i -lt $NB_ESSAI ] ; do |
---|
1012 | \rcp -rp ${STOREHOST}:$1 $2 > /tmp/out_command.$$ 2>&1 |
---|
1013 | status=$? |
---|
1014 | if [ ${status} -gt 0 ]; then |
---|
1015 | IGCM_debug_Print 2 "IGCM_sys_Get_Dir : rcp failed error code ${status} ${i}/${NB_ESSAI}" |
---|
1016 | IGCM_debug_Print 2 "IGCM_sys_Get_Dir : sleep ${DELAI} seconds and try again." |
---|
1017 | sleep $DELAI |
---|
1018 | else |
---|
1019 | break |
---|
1020 | fi |
---|
1021 | (( i = i + 1 )) |
---|
1022 | done |
---|
1023 | else |
---|
1024 | \cp -rp $1 $2 > /tmp/out_command.$$ 2>&1 |
---|
1025 | status=$? |
---|
1026 | if [ ${status} -gt 0 ] ; then |
---|
1027 | IGCM_debug_Print 2 "IGCM_sys_Get_Dir : cp failed error code ${status}" |
---|
1028 | cat /tmp/out_command.$$ |
---|
1029 | IGCM_debug_Exit "IGCM_sys_Get_Dir" |
---|
1030 | else |
---|
1031 | \rm /tmp/out_command.$$ |
---|
1032 | fi |
---|
1033 | fi |
---|
1034 | if [ ${status} -gt 0 ] ; then |
---|
1035 | echo "IGCM_sys_Get_Dir : error." |
---|
1036 | cat /tmp/out_command.$$ |
---|
1037 | IGCM_debug_Exit "IGCM_sys_Get_Dir" |
---|
1038 | else |
---|
1039 | \rm /tmp/out_command.$$ |
---|
1040 | fi |
---|
1041 | fi |
---|
1042 | IGCM_debug_PopStack "IGCM_sys_Get_Dir" |
---|
1043 | } |
---|
1044 | |
---|
1045 | #D-#================================================== |
---|
1046 | #D-function IGCM_sys_Get_Master |
---|
1047 | #D-* Purpose: Copy a complete directory from MASTER filesystem |
---|
1048 | #D-* Examples: |
---|
1049 | #D- |
---|
1050 | function IGCM_sys_Get_Master { |
---|
1051 | IGCM_debug_PushStack "IGCM_sys_Get_Master" $@ |
---|
1052 | if ( $DEBUG_sys ) ; then |
---|
1053 | echo "IGCM_sys_Get_Master :" $@ |
---|
1054 | fi |
---|
1055 | if [ $DRYRUN = 0 ]; then |
---|
1056 | if ( [ ! -d ${1} ] && [ ! -f ${1} ] ) ; then |
---|
1057 | echo "WARNING : IGCM_sys_Get_Master ${1} DOES NOT EXIST ." |
---|
1058 | IGCM_debug_PopStack "IGCM_sys_Get_Master" |
---|
1059 | return |
---|
1060 | fi |
---|
1061 | |
---|
1062 | typeset NB_ESSAI DELAI status i |
---|
1063 | # number of tentative |
---|
1064 | NB_ESSAI=3 |
---|
1065 | # time delay between tentative |
---|
1066 | DELAI=2 |
---|
1067 | |
---|
1068 | i=0 |
---|
1069 | while [ $i -lt $NB_ESSAI ] ; do |
---|
1070 | \cp -urL $1 $2 > /tmp/out_command.$$ 2>&1 |
---|
1071 | status=$? |
---|
1072 | if [ ${status} -gt 0 ]; then |
---|
1073 | IGCM_debug_Print 2 "IGCM_sys_Get_Master : cp failed error code ${status} ${i}/${NB_ESSAI}" |
---|
1074 | IGCM_debug_Print 2 "IGCM_sys_Get_Master : sleep ${DELAI} seconds and try again." |
---|
1075 | sleep $DELAI |
---|
1076 | else |
---|
1077 | break |
---|
1078 | fi |
---|
1079 | (( i = i + 1 )) |
---|
1080 | done |
---|
1081 | |
---|
1082 | if [ ${status} -gt 0 ] ; then |
---|
1083 | echo "IGCM_sys_Get_Master : error." |
---|
1084 | cat /tmp/out_command.$$ |
---|
1085 | IGCM_debug_Exit "IGCM_sys_Get_Master" |
---|
1086 | else |
---|
1087 | \rm /tmp/out_command.$$ |
---|
1088 | fi |
---|
1089 | fi |
---|
1090 | IGCM_debug_PopStack "IGCM_sys_Get_Master" |
---|
1091 | } |
---|
1092 | |
---|
1093 | #==================================================== |
---|
1094 | #- Call IGCM_sys_Mirror_libIGCM now ! |
---|
1095 | if ( $MirrorlibIGCM ) ; then |
---|
1096 | IGCM_sys_Mirror_libIGCM |
---|
1097 | fi |
---|
1098 | |
---|
1099 | #D-#================================================== |
---|
1100 | #D-function IGCM_sys_Put_Rest |
---|
1101 | #D-* Purpose: Put computied restarts on ${ARCHIVE}. |
---|
1102 | #D- File and target directory must exist. |
---|
1103 | #D-* Examples: |
---|
1104 | #D- |
---|
1105 | function IGCM_sys_Put_Rest { |
---|
1106 | IGCM_debug_PushStack "IGCM_sys_Put_Rest" $@ |
---|
1107 | if ( $DEBUG_sys ) ; then |
---|
1108 | echo "IGCM_sys_Put_Rest :" $@ |
---|
1109 | fi |
---|
1110 | if [ $DRYRUN = 0 ]; then |
---|
1111 | if [ ! -f ${1} ] ; then |
---|
1112 | echo "ERROR : IGCM_sys_Put_Rest ${1} DOES NOT EXIST ." |
---|
1113 | IGCM_debug_Exit "IGCM_sys_Put_Rest" |
---|
1114 | fi |
---|
1115 | |
---|
1116 | typeset status |
---|
1117 | # |
---|
1118 | if [ X${JobType} = XRUN ] ; then |
---|
1119 | IGCM_sys_Chmod 444 ${1} |
---|
1120 | fi |
---|
1121 | # |
---|
1122 | # |
---|
1123 | #Command depends on targeted file system |
---|
1124 | DEBUG_sys=false IGCM_sys_IsFileArchived $2 |
---|
1125 | if [ $? = 0 ] ; then |
---|
1126 | mfput $1 $2 > /tmp/out_command.$$ 2>&1 |
---|
1127 | status=$? |
---|
1128 | else |
---|
1129 | IGCM_sys_MkdirArchive $( dirname $2 ) |
---|
1130 | \cp $1 $2 > /tmp/out_command.$$ 2>&1 |
---|
1131 | status=$? |
---|
1132 | fi |
---|
1133 | |
---|
1134 | # #RSYNC WITH NETWORK RSH CALL |
---|
1135 | # IGCM_sys_MkdirArchive $( dirname $2 ) |
---|
1136 | # echo ${RSYNC} ${RSYNC_opt} --rsync-path=${REMOTE_RSYNC} -e rsh ${RUN_DIR}/$1 ${STOREHOST}:${2} > /tmp/out_command.$$ 2>&1 |
---|
1137 | # ${RSYNC} ${RSYNC_opt} --rsync-path=${REMOTE_RSYNC} -e rsh ${RUN_DIR}/$1 ${STOREHOST}:${2} >> /tmp/out_command.$$ 2>&1 |
---|
1138 | |
---|
1139 | # #RSYNC WITH NFS USE |
---|
1140 | # echo ${RSYNC} ${RSYNC_opt} ${RUN_DIR}/$1 ${2} > /tmp/out_command.$$ 2>&1 |
---|
1141 | # ${RSYNC} ${RSYNC_opt} ${RUN_DIR}/$1 ${2} >> /tmp/out_command.$$ 2>&1 |
---|
1142 | |
---|
1143 | # status=$? |
---|
1144 | # IGCM_sys_Rsync_out $status |
---|
1145 | |
---|
1146 | # ${libIGCM}/libIGCM_sys/IGCM_analyse_rsync_out.awk /tmp/out_command.$$ |
---|
1147 | # (( status=status+$? )) |
---|
1148 | |
---|
1149 | if [ ${status} -gt 0 ] ; then |
---|
1150 | echo "IGCM_sys_Put_Rest : mfput or cp failed error code ${status}" |
---|
1151 | cat /tmp/out_command.$$ |
---|
1152 | IGCM_debug_Exit "IGCM_sys_Put_Rest" |
---|
1153 | else |
---|
1154 | \rm /tmp/out_command.$$ |
---|
1155 | fi |
---|
1156 | fi |
---|
1157 | IGCM_debug_PopStack "IGCM_sys_Put_Rest" |
---|
1158 | } |
---|
1159 | |
---|
1160 | #D-#================================================== |
---|
1161 | #D-function IGCM_sys_PutBuffer_Rest |
---|
1162 | #D-* Purpose: Put computied restarts on ${SCRATCHDIR}. |
---|
1163 | #D- File and target directory must exist. |
---|
1164 | #D-* Examples: |
---|
1165 | #D- |
---|
1166 | function IGCM_sys_PutBuffer_Rest { |
---|
1167 | IGCM_debug_PushStack "IGCM_sys_PutBuffer_Rest" $@ |
---|
1168 | if ( $DEBUG_sys ) ; then |
---|
1169 | echo "IGCM_sys_PutBuffer_Rest :" $@ |
---|
1170 | fi |
---|
1171 | if [ $DRYRUN = 0 ]; then |
---|
1172 | if [ ! -f ${1} ] ; then |
---|
1173 | echo "ERROR : IGCM_sys_PutBuffer_Rest ${1} DOES NOT EXIST ." |
---|
1174 | IGCM_debug_Exit "IGCM_sys_PutBuffer_Rest" |
---|
1175 | fi |
---|
1176 | |
---|
1177 | typeset status |
---|
1178 | # |
---|
1179 | if [ X${JobType} = XRUN ] ; then |
---|
1180 | IGCM_sys_Chmod 444 ${1} |
---|
1181 | fi |
---|
1182 | |
---|
1183 | # |
---|
1184 | # USUAL WAY |
---|
1185 | \cp $1 $2 > /tmp/out_command.$$ 2>&1 |
---|
1186 | status=$? |
---|
1187 | |
---|
1188 | if [ ${status} -gt 0 ] ; then |
---|
1189 | echo "IGCM_sys_PutBuffer_Rest : error code ${status}" |
---|
1190 | [ -f ${2} ] && ls -l ${2} |
---|
1191 | [ -f ${2}/${1} ] && ls -l ${2}/${1} |
---|
1192 | cat /tmp/out_command.$$ |
---|
1193 | IGCM_debug_Exit "IGCM_sys_PutBuffer_Rest" |
---|
1194 | else |
---|
1195 | \rm /tmp/out_command.$$ |
---|
1196 | fi |
---|
1197 | fi |
---|
1198 | IGCM_debug_PopStack "IGCM_sys_PutBuffer_Rest" |
---|
1199 | } |
---|
1200 | |
---|
1201 | #D-#================================================== |
---|
1202 | #D-function IGCM_sys_PrepareTaredRestart |
---|
1203 | #D-* Purpose: Prepare tared restart to be access by computing job. |
---|
1204 | #D-* Examples: |
---|
1205 | #D- |
---|
1206 | function IGCM_sys_PrepareTaredRestart { |
---|
1207 | IGCM_debug_PushStack "IGCM_sys_PrepareTaredRestart" $@ |
---|
1208 | if [ $DRYRUN = 0 ]; then |
---|
1209 | [ ! -f $( basename $1 ) ] && IGCM_sys_Get $1 . |
---|
1210 | fi |
---|
1211 | IGCM_debug_PopStack "IGCM_sys_PrepareTaredRestart" |
---|
1212 | } |
---|
1213 | |
---|
1214 | #D-#================================================== |
---|
1215 | #D-function IGCM_sys_Put_Out |
---|
1216 | #D-* Purpose: Copy a file on ${ARCHIVE} after having chmod it in readonly |
---|
1217 | #D-* Examples: |
---|
1218 | #D- |
---|
1219 | function IGCM_sys_Put_Out { |
---|
1220 | IGCM_debug_PushStack "IGCM_sys_Put_Out" $@ |
---|
1221 | if ( $DEBUG_sys ) ; then |
---|
1222 | echo "IGCM_sys_Put_Out :" $@ |
---|
1223 | fi |
---|
1224 | |
---|
1225 | typeset status |
---|
1226 | |
---|
1227 | if [ $DRYRUN = 0 ]; then |
---|
1228 | if [ ! -f ${1} ] ; then |
---|
1229 | echo "WARNING : IGCM_sys_Put_Out ${1} DOES NOT EXIST ." |
---|
1230 | IGCM_debug_PopStack "IGCM_sys_Put_Out" |
---|
1231 | return 1 |
---|
1232 | fi |
---|
1233 | |
---|
1234 | # |
---|
1235 | if [ X${JobType} = XRUN ] ; then |
---|
1236 | if [ X${3} = X ] ; then |
---|
1237 | IGCM_sys_Chmod 444 ${1} |
---|
1238 | fi |
---|
1239 | fi |
---|
1240 | # |
---|
1241 | # |
---|
1242 | #Command depends on targeted file system |
---|
1243 | DEBUG_sys=false IGCM_sys_IsFileArchived $2 |
---|
1244 | if [ $? = 0 ] ; then |
---|
1245 | mfput $1 $2 > /tmp/out_command.$$ 2>&1 |
---|
1246 | status=$? |
---|
1247 | else |
---|
1248 | IGCM_sys_MkdirArchive $( dirname $2 ) |
---|
1249 | \cp $1 $2 > /tmp/out_command.$$ 2>&1 |
---|
1250 | status=$? |
---|
1251 | fi |
---|
1252 | |
---|
1253 | # #RSYNC WITH NETWORK RSH CALL |
---|
1254 | # IGCM_sys_MkdirArchive $( dirname $2 ) |
---|
1255 | # echo ${RSYNC} ${RSYNC_opt} --rsync-path=${REMOTE_RSYNC} -e rsh ${RUN_DIR}/$1 ${STOREHOST}:${2} > /tmp/out_command.$$ 2>&1 |
---|
1256 | # ${RSYNC} ${RSYNC_opt} --rsync-path=${REMOTE_RSYNC} -e rsh ${RUN_DIR}/$1 ${STOREHOST}:${2} >> /tmp/out_command.$$ 2>&1 |
---|
1257 | |
---|
1258 | # #RSYNC WITH NFS USE |
---|
1259 | # echo ${RSYNC} ${RSYNC_opt} ${RUN_DIR}/$1 ${2} > /tmp/out_command.$$ 2>&1 |
---|
1260 | # ${RSYNC} ${RSYNC_opt} ${RUN_DIR}/$1 ${2} >> /tmp/out_command.$$ 2>&1 |
---|
1261 | |
---|
1262 | # status=$? |
---|
1263 | # IGCM_sys_Rsync_out $status |
---|
1264 | |
---|
1265 | # ${libIGCM}/libIGCM_sys/IGCM_analyse_rsync_out.awk /tmp/out_command.$$ |
---|
1266 | # (( status=status+$? )) |
---|
1267 | |
---|
1268 | if [ ${status} -gt 0 ] ; then |
---|
1269 | IGCM_debug_Print 2 "IGCM_sys_Put_Out : mfput or cp failed error code ${status}" |
---|
1270 | cat /tmp/out_command.$$ |
---|
1271 | IGCM_debug_Exit "IGCM_sys_Put_Out" |
---|
1272 | else |
---|
1273 | \rm /tmp/out_command.$$ |
---|
1274 | fi |
---|
1275 | fi |
---|
1276 | IGCM_debug_PopStack "IGCM_sys_Put_Out" |
---|
1277 | return 0 |
---|
1278 | } |
---|
1279 | |
---|
1280 | #D-#================================================== |
---|
1281 | #D-function IGCM_sys_PutBuffer_Out |
---|
1282 | #D-* Purpose: Copy a file on ${WORKDIR} after having chmod it in readonly |
---|
1283 | #D-* Examples: |
---|
1284 | #D- |
---|
1285 | function IGCM_sys_PutBuffer_Out { |
---|
1286 | IGCM_debug_PushStack "IGCM_sys_PutBuffer_Out" $@ |
---|
1287 | if ( $DEBUG_sys ) ; then |
---|
1288 | echo "IGCM_sys_PutBuffer_Out :" $@ |
---|
1289 | fi |
---|
1290 | |
---|
1291 | typeset NB_ESSAI DELAI status i exist skip |
---|
1292 | |
---|
1293 | # number of tentative |
---|
1294 | NB_ESSAI=3 |
---|
1295 | # time delay between tentative |
---|
1296 | DELAI=2 |
---|
1297 | |
---|
1298 | if [ $DRYRUN = 0 ]; then |
---|
1299 | if [ ! -f ${1} ] ; then |
---|
1300 | echo "WARNING : IGCM_sys_PutBuffer_Out ${1} DOES NOT EXIST ." |
---|
1301 | IGCM_debug_PopStack "IGCM_sys_PutBuffer_Out" |
---|
1302 | return 1 |
---|
1303 | fi |
---|
1304 | # |
---|
1305 | IGCM_sys_Mkdir $( dirname $2 ) |
---|
1306 | # |
---|
1307 | |
---|
1308 | exist=false |
---|
1309 | skip=false |
---|
1310 | if [ -f $2 ] ; then |
---|
1311 | IGCM_debug_Print 1 "$2 already exist" |
---|
1312 | exist=true |
---|
1313 | if [ "X$( diff $1 $2 )" = X ] ; then |
---|
1314 | IGCM_debug_Print 2 "$1 and $2 are the same file, we skip the copy" |
---|
1315 | status=0 |
---|
1316 | skip=true |
---|
1317 | else |
---|
1318 | IGCM_debug_Print 2 "$1 and $2 are not the same file, we force the copy" |
---|
1319 | skip=false |
---|
1320 | fi |
---|
1321 | fi |
---|
1322 | # |
---|
1323 | if ( [ X${exist} = Xtrue ] && [ X${skip} = Xfalse ] ) ; then |
---|
1324 | IGCM_sys_Chmod u+w $2 |
---|
1325 | fi |
---|
1326 | |
---|
1327 | if [ X${skip} = Xfalse ] ; then |
---|
1328 | i=0 |
---|
1329 | while [ $i -lt $NB_ESSAI ] ; do |
---|
1330 | # USUAL WAY |
---|
1331 | \cp $1 $2 > /tmp/out_command.$$ 2>&1 |
---|
1332 | status=$? |
---|
1333 | if [ ${status} -gt 0 ]; then |
---|
1334 | IGCM_debug_Print 2 "IGCM_sys_PutBuffer_Out : cp failed error code ${status} ${i}/${NB_ESSAI}" |
---|
1335 | IGCM_debug_Print 2 "IGCM_sys_PutBuffer_Out : sleep ${DELAI} seconds and try again." |
---|
1336 | [ -f ${2} ] && ls -l ${2} |
---|
1337 | [ -f ${2}/${1} ] && ls -l ${2}/${1} |
---|
1338 | sleep $DELAI |
---|
1339 | else |
---|
1340 | break |
---|
1341 | fi |
---|
1342 | (( i = i + 1 )) |
---|
1343 | done |
---|
1344 | fi |
---|
1345 | |
---|
1346 | if [ ${status} -gt 0 ] ; then |
---|
1347 | echo "IGCM_sys_PutBuffer_Out : error." |
---|
1348 | [ -f ${2} ] && ls -l ${2} |
---|
1349 | [ -f ${2}/${1} ] && ls -l ${2}/${1} |
---|
1350 | cat /tmp/out_command.$$ |
---|
1351 | IGCM_debug_Exit "IGCM_sys_PutBuffer_Out" |
---|
1352 | else |
---|
1353 | |
---|
1354 | if [ X${JobType} = XRUN ] ; then |
---|
1355 | if [ X${3} = X ] ; then |
---|
1356 | [ -f ${2} ] && IGCM_sys_Chmod 444 ${2} |
---|
1357 | [ -f ${2}/${1} ] && IGCM_sys_Chmod 444 ${2}/${1} |
---|
1358 | fi |
---|
1359 | fi |
---|
1360 | |
---|
1361 | \rm /tmp/out_command.$$ |
---|
1362 | fi |
---|
1363 | fi |
---|
1364 | IGCM_debug_PopStack "IGCM_sys_PutBuffer_Out" |
---|
1365 | return 0 |
---|
1366 | } |
---|
1367 | |
---|
1368 | #D-#================================================== |
---|
1369 | #D-function IGCM_sys_Get |
---|
1370 | #D-* Purpose: Get a file from ${ARCHIVE} |
---|
1371 | #D-* Examples: IGCM_sys_Get myfile /destpath/myfile_with_PREFIX |
---|
1372 | #D- IGCM_sys_Get /l Array_contain_myfiles /destpath/ |
---|
1373 | function IGCM_sys_Get { |
---|
1374 | IGCM_debug_PushStack "IGCM_sys_Get" $@ |
---|
1375 | |
---|
1376 | typeset DEST status dm_liste |
---|
1377 | |
---|
1378 | if ( $DEBUG_sys ) ; then |
---|
1379 | echo "IGCM_sys_Get :" $@ |
---|
1380 | fi |
---|
1381 | if [ $DRYRUN -le 2 ]; then |
---|
1382 | if [ X${1} = X'/l' ] ; then |
---|
1383 | eval set +A dm_liste \${${2}} |
---|
1384 | else |
---|
1385 | dm_liste=${1} |
---|
1386 | fi |
---|
1387 | eval DEST=\${${#}} |
---|
1388 | |
---|
1389 | # test if the (first) file is present in the old computation : |
---|
1390 | DEBUG_sys=false IGCM_sys_IsFileArchived ${dm_liste[0]} |
---|
1391 | if [ $? = 0 ] ; then |
---|
1392 | IGCM_sys_TestFileArchive ${dm_liste[0]} |
---|
1393 | status=$? |
---|
1394 | else |
---|
1395 | IGCM_sys_TestFileBuffer ${dm_liste[0]} |
---|
1396 | status=$? |
---|
1397 | fi |
---|
1398 | |
---|
1399 | if [ ${status} -gt 0 ] ; then |
---|
1400 | echo "IGCM_sys_Get, ERROR : regular file ${dm_liste[0]} DOES NOT EXIST ." |
---|
1401 | IGCM_debug_Exit "IGCM_sys_Get" |
---|
1402 | return |
---|
1403 | fi |
---|
1404 | |
---|
1405 | #Command depends on targeted file system |
---|
1406 | DEBUG_sys=false IGCM_sys_IsFileArchived ${dm_liste[0]} |
---|
1407 | if [ $? = 0 ] ; then |
---|
1408 | mfget ${dm_liste[*]} ${DEST} > /tmp/out_command.$$ 2>&1 |
---|
1409 | status=$? |
---|
1410 | else |
---|
1411 | \cp ${dm_liste[*]} ${DEST} > /tmp/out_command.$$ 2>&1 |
---|
1412 | status=$? |
---|
1413 | fi |
---|
1414 | |
---|
1415 | # #RSYNC WITH NETWORK RSH CALL |
---|
1416 | # echo ${RSYNC} ${RSYNC_opt} --rsync-path=${REMOTE_RSYNC} -e rsh ${STOREHOST}:"${dm_liste}" ${STOREHOST}:${RUN_DIR}/${DEST} > /tmp/out_command.$$ 2>&1 |
---|
1417 | # ${RSYNC} ${RSYNC_opt} --rsync-path=${REMOTE_RSYNC} -e rsh ${STOREHOST}:"${dm_liste}" ${STOREHOST}:${RUN_DIR}/${DEST} >> /tmp/out_command.$$ 2>&1 |
---|
1418 | |
---|
1419 | # #RSYNC WITH NFS USE |
---|
1420 | # echo ${RSYNC} ${RSYNC_opt} ${dm_liste} ${RUN_DIR}/${DEST} > /tmp/out_command.$$ 2>&1 |
---|
1421 | # ${RSYNC} ${RSYNC_opt} ${dm_liste} ${RUN_DIR}/${DEST} >> /tmp/out_command.$$ 2>&1 |
---|
1422 | |
---|
1423 | # status=$? |
---|
1424 | # IGCM_sys_Rsync_out $status |
---|
1425 | |
---|
1426 | # ${libIGCM}/libIGCM_sys/IGCM_analyse_rsync_out.awk /tmp/out_command.$$ |
---|
1427 | # (( status=status+$? )) |
---|
1428 | |
---|
1429 | if [ ${status} -gt 0 ] ; then |
---|
1430 | IGCM_debug_Print 2 "IGCM_sys_Get : mfget or cp failed error code ${status}" |
---|
1431 | cat /tmp/out_command.$$ |
---|
1432 | IGCM_debug_Exit "IGCM_sys_Get" |
---|
1433 | else |
---|
1434 | \rm /tmp/out_command.$$ |
---|
1435 | fi |
---|
1436 | fi |
---|
1437 | IGCM_debug_PopStack "IGCM_sys_Get" |
---|
1438 | } |
---|
1439 | |
---|
1440 | #D-#================================================== |
---|
1441 | #D-function IGCM_sys_GetBuffer |
---|
1442 | #D-* Purpose: Get a file from ${SCRATCHDIR} |
---|
1443 | #D-* Examples: IGCM_sys_GetBuffer myfile /destpath/myfile_with_PREFIX |
---|
1444 | #D- IGCM_sys_GetBuffer /l Array_contain_myfiles /destpath/ |
---|
1445 | function IGCM_sys_GetBuffer { |
---|
1446 | IGCM_debug_PushStack "IGCM_sys_GetBuffer" $@ |
---|
1447 | |
---|
1448 | typeset DEST buf_liste target file_work |
---|
1449 | typeset NB_ESSAI DELAI status i |
---|
1450 | |
---|
1451 | if ( $DEBUG_sys ) ; then |
---|
1452 | echo "IGCM_sys_GetBuffer :" $@ |
---|
1453 | fi |
---|
1454 | |
---|
1455 | # number of tentative |
---|
1456 | NB_ESSAI=3 |
---|
1457 | # time delay between tentative |
---|
1458 | DELAI=2 |
---|
1459 | |
---|
1460 | if [ $DRYRUN -le 2 ]; then |
---|
1461 | if [ X${1} = X'/l' ] ; then |
---|
1462 | eval set +A buf_liste \${${2}} |
---|
1463 | else |
---|
1464 | eval set +A buf_liste ${1} |
---|
1465 | fi |
---|
1466 | eval DEST=\${${#}} |
---|
1467 | |
---|
1468 | #USUAL WAY |
---|
1469 | if [ X${1} = X'/l' ] ; then |
---|
1470 | for target in ${buf_liste[*]} ; do |
---|
1471 | local_file=$( basename ${target} ) |
---|
1472 | i=0 |
---|
1473 | while [ $i -lt $NB_ESSAI ] ; do |
---|
1474 | \cp ${target} ${DEST}/${local_file} >> /tmp/out_command.$$ 2>&1 |
---|
1475 | status=$? |
---|
1476 | if [ ${status} -gt 0 ]; then |
---|
1477 | IGCM_debug_Print 2 "IGCM_sys_GetBuffer : cp failed error code ${status} ${i}/${NB_ESSAI}" |
---|
1478 | IGCM_debug_Print 2 "IGCM_sys_GetBuffer : sleep ${DELAI} seconds and try again." |
---|
1479 | sleep $DELAI |
---|
1480 | else |
---|
1481 | break |
---|
1482 | fi |
---|
1483 | (( i = i + 1 )) |
---|
1484 | done |
---|
1485 | if [ ${status} -gt 0 ] ; then |
---|
1486 | echo "IGCM_sys_Get : error" |
---|
1487 | cat /tmp/out_command.$$ |
---|
1488 | \rm /tmp/out_command.$$ |
---|
1489 | IGCM_debug_Exit "IGCM_sys_GetBuffer" |
---|
1490 | else |
---|
1491 | \rm /tmp/out_command.$$ |
---|
1492 | fi |
---|
1493 | done |
---|
1494 | else |
---|
1495 | i=0 |
---|
1496 | while [ $i -lt $NB_ESSAI ] ; do |
---|
1497 | \cp ${buf_liste} ${DEST} >> /tmp/out_command.$$ 2>&1 |
---|
1498 | status=$? |
---|
1499 | if [ ${status} -gt 0 ]; then |
---|
1500 | IGCM_debug_Print 2 "IGCM_sys_GetBuffer : cp failed error code ${status} ${i}/${NB_ESSAI}" |
---|
1501 | IGCM_debug_Print 2 "IGCM_sys_GetBuffer : sleep ${DELAI} seconds and try again." |
---|
1502 | sleep $DELAI |
---|
1503 | else |
---|
1504 | break |
---|
1505 | fi |
---|
1506 | (( i = i + 1 )) |
---|
1507 | done |
---|
1508 | if [ ${status} -gt 0 ] ; then |
---|
1509 | echo "IGCM_sys_Get : error" |
---|
1510 | cat /tmp/out_command.$$ |
---|
1511 | \rm /tmp/out_command.$$ |
---|
1512 | IGCM_debug_Exit "IGCM_sys_GetBuffer" |
---|
1513 | else |
---|
1514 | \rm /tmp/out_command.$$ |
---|
1515 | fi |
---|
1516 | fi |
---|
1517 | fi |
---|
1518 | IGCM_debug_PopStack "IGCM_sys_GetBuffer" |
---|
1519 | } |
---|
1520 | |
---|
1521 | #D-#================================================== |
---|
1522 | #D-function IGCM_sys_GetDate_FichWork |
---|
1523 | #D-* Purpose: donne la date filesys d'un fichier sur le filesystem WORK |
---|
1524 | #D-* Examples: |
---|
1525 | #D- |
---|
1526 | function IGCM_sys_GetDate_FichWork { |
---|
1527 | IGCM_debug_PushStack "IGCM_sys_FichWork" $@ |
---|
1528 | if ( $DEBUG_sys ) ; then |
---|
1529 | echo "IGCM_sys_GetDate_FichWork :" $@ |
---|
1530 | fi |
---|
1531 | |
---|
1532 | if [ $# -ge 3 ] ; then |
---|
1533 | mode=$3 |
---|
1534 | TimeStyle=$4 |
---|
1535 | else |
---|
1536 | mode="default" |
---|
1537 | TimeStyle="%Y%m%d%H%M%S" |
---|
1538 | fi |
---|
1539 | |
---|
1540 | typeset dateF |
---|
1541 | set +A dateF -- $( ls -l --full-time --time-style=+"${TimeStyle}" ${1} ) |
---|
1542 | |
---|
1543 | case $mode in |
---|
1544 | "default") |
---|
1545 | eval ${2}=${dateF[5]} |
---|
1546 | ;; |
---|
1547 | "SplitFields") |
---|
1548 | eval ${2}="${dateF[5]}\ ${dateF[6]}" |
---|
1549 | ;; |
---|
1550 | esac |
---|
1551 | |
---|
1552 | |
---|
1553 | # donne la date filesys d'un fichier sur la machine work |
---|
1554 | IGCM_debug_PopStack "IGCM_sys_FichWork" |
---|
1555 | } |
---|
1556 | |
---|
1557 | #D-#================================================== |
---|
1558 | #D-function IGCM_sys_GetDate_FichArchive |
---|
1559 | #D-* Purpose: donne la date filesys d'un fichier sur le filesystem ARCHIVE |
---|
1560 | #D-* Examples: |
---|
1561 | #D- |
---|
1562 | function IGCM_sys_GetDate_FichArchive { |
---|
1563 | IGCM_debug_PushStack "IGCM_sys_FichArchive" $@ |
---|
1564 | if ( $DEBUG_sys ) ; then |
---|
1565 | echo "IGCM_sys_GetDate_FichArchive :" $@ |
---|
1566 | fi |
---|
1567 | typeset dateF |
---|
1568 | set +A dateF -- $( rsh ${STOREHOST} -n ls -l --full-time --time-style='+%Y%m%d%H%M%S' ${1} ) |
---|
1569 | eval ${2}=${dateF[5]} |
---|
1570 | |
---|
1571 | IGCM_debug_PopStack "IGCM_sys_FichArchive" |
---|
1572 | } |
---|
1573 | |
---|
1574 | #D-#================================================== |
---|
1575 | #D-function IGCM_sys_GetDate_Monitoring |
---|
1576 | #D-* Purpose: get the last year for which the monitoring has been computed |
---|
1577 | #D-* Examples: |
---|
1578 | #D- |
---|
1579 | function IGCM_sys_GetDate_Monitoring { |
---|
1580 | IGCM_debug_PushStack "IGCM_sys_GetDate_Monitoring" $@ |
---|
1581 | if ( $DEBUG_sys ) ; then |
---|
1582 | echo "IGCM_sys_GetDate_Monitoring :" $@ |
---|
1583 | fi |
---|
1584 | |
---|
1585 | IGCM_sys_Cd /tmp |
---|
1586 | IGCM_sys_Get ${1} . |
---|
1587 | eval ${2}=$( cdo showyear $( basename ${1} ) 2> /dev/null | gawk '{ print $NF }' ) |
---|
1588 | IGCM_sys_Cd - |
---|
1589 | |
---|
1590 | IGCM_debug_PopStack "IGCM_sys_GetDate_Monitoring" |
---|
1591 | } |
---|
1592 | |
---|
1593 | #D-#================================================== |
---|
1594 | #D-function IGCM_sys_Put_Dods |
---|
1595 | #D-* Purpose: Put $(ARCHIVE) files on DODS internet protocole. |
---|
1596 | #D-* Examples: |
---|
1597 | #D- |
---|
1598 | function IGCM_sys_Put_Dods { |
---|
1599 | IGCM_debug_PushStack "IGCM_sys_Put_Dods" $@ |
---|
1600 | if ( $DEBUG_sys ) ; then |
---|
1601 | echo "IGCM_sys_Put_Dods :" $@ |
---|
1602 | fi |
---|
1603 | if [ $DRYRUN = 0 ]; then |
---|
1604 | # We take our time on that |
---|
1605 | sleep 10 |
---|
1606 | IGCM_sys_TestDirArchive ${R_SAVE}/${1} |
---|
1607 | if [ $? != 0 ] ; then |
---|
1608 | echo "WARNING : IGCM_sys_Put_Dods ${R_SAVE}/${1} DOES NOT EXIST ." |
---|
1609 | IGCM_debug_PopStack "IGCM_sys_Put_Dods" |
---|
1610 | return |
---|
1611 | fi |
---|
1612 | |
---|
1613 | typeset status |
---|
1614 | # |
---|
1615 | rsh gaya exec /bin/ksh <<EOF |
---|
1616 | cd ${R_SAVE} |
---|
1617 | /usr/local/bin/dods_rm DODS/pub/${LOGIN}/${R_DODS}/${1} > /dev/null 2>&1 |
---|
1618 | /bin/chmod -R u+w ${R_SAVE}/${1} |
---|
1619 | /usr/local/bin/dods_cp ${1} DODS/pub/${LOGIN}/${R_DODS} > /dev/null 2>&1 |
---|
1620 | /bin/chmod -R +rX ${R_SAVE}/${1} |
---|
1621 | /bin/chmod -R u+w ${R_SAVE}/${1} |
---|
1622 | EOF |
---|
1623 | status=$? |
---|
1624 | |
---|
1625 | if [ ${status} -gt 0 ] ; then |
---|
1626 | echo "IGCM_sys_Put_Dods : error." |
---|
1627 | IGCM_debug_Exit "IGCM_sys_Put_Dods" |
---|
1628 | fi |
---|
1629 | fi |
---|
1630 | IGCM_debug_PopStack "IGCM_sys_Put_Dods" |
---|
1631 | } |
---|
1632 | |
---|
1633 | ############################################################## |
---|
1634 | # REBUILD OPERATOR |
---|
1635 | |
---|
1636 | #D-#================================================== |
---|
1637 | #D-function IGCM_sys_rebuild |
---|
1638 | #D-* Purpose: rebuild parallel files |
---|
1639 | #D-* Examples: |
---|
1640 | #D- |
---|
1641 | function IGCM_sys_rebuild { |
---|
1642 | IGCM_debug_PushStack "IGCM_sys_rebuild" -- $@ |
---|
1643 | if ( $DEBUG_sys ) ; then |
---|
1644 | echo "IGCM_sys_rebuild :" $@ |
---|
1645 | fi |
---|
1646 | |
---|
1647 | typeset NB_ESSAI DELAI status i firstArg |
---|
1648 | # number of tentative |
---|
1649 | NB_ESSAI=3 |
---|
1650 | # time delay between tentative |
---|
1651 | DELAI=2 |
---|
1652 | |
---|
1653 | i=0 |
---|
1654 | while [ $i -lt $NB_ESSAI ] ; do |
---|
1655 | /smphome/rech/psl/rpsl035/bin/rebuild -f -o $@ > /tmp/out_command.$$ 2>&1 |
---|
1656 | status=$? |
---|
1657 | if [ ${status} -gt 0 ] ; then |
---|
1658 | IGCM_debug_Print 2 "IGCM_sys_rebuild : error code ${status}" |
---|
1659 | cat /tmp/out_command.$$ |
---|
1660 | \rm /tmp/out_command.$$ |
---|
1661 | IGCM_debug_Print 2 "IGCM_sys_rebuild : ${i}/${NB_ESSAI} sleep ${DELAI} seconds and try again." |
---|
1662 | firstArg=${1} |
---|
1663 | \rm ${firstArg} |
---|
1664 | sleep $DELAI |
---|
1665 | else |
---|
1666 | \rm /tmp/out_command.$$ |
---|
1667 | break |
---|
1668 | fi |
---|
1669 | (( i = i + 1 )) |
---|
1670 | done |
---|
1671 | |
---|
1672 | if [ ${status} -gt 0 ] ; then |
---|
1673 | echo "IGCM_sys_rebuild : rebuild error code is ${status}" |
---|
1674 | IGCM_debug_Exit "rebuild" |
---|
1675 | fi |
---|
1676 | |
---|
1677 | IGCM_debug_PopStack "IGCM_sys_rebuild" |
---|
1678 | } |
---|
1679 | |
---|
1680 | #D-#================================================== |
---|
1681 | #D-function IGCM_sys_rebuild_station |
---|
1682 | #D-* Purpose: rebuild parallel files describing station |
---|
1683 | #D-* Examples: |
---|
1684 | #D- |
---|
1685 | function IGCM_sys_rebuild_station { |
---|
1686 | IGCM_debug_PushStack "IGCM_sys_rebuild_station" -- $@ |
---|
1687 | typeset i list_opt file_in file_out prefix_invert list_invert |
---|
1688 | if ( $DEBUG_sys ) ; then |
---|
1689 | echo "IGCM_sys_rebuild_station :" $@ |
---|
1690 | fi |
---|
1691 | list_opt=$@ |
---|
1692 | |
---|
1693 | # Invert Axis : t,x -> x,t |
---|
1694 | # t,pres,x -> x,t,pres |
---|
1695 | # So that we can concatenate along x |
---|
1696 | i=0 |
---|
1697 | for file_in in ${list_opt} ; do |
---|
1698 | (( i = i + 1)) |
---|
1699 | [ ${i} = 1 ] && file_out=${file_in} && continue |
---|
1700 | prefix_invert=$( basename ${file_in} .nc ) |
---|
1701 | IGCM_sys_ncpdq -a x,time_counter -a x,time_counter,presnivs ${file_in} ${prefix_invert}_xt.nc |
---|
1702 | list_invert[${#list_invert[*]}]=${prefix_invert}_xt.nc |
---|
1703 | done |
---|
1704 | |
---|
1705 | # Concatenate |
---|
1706 | IGCM_sys_ncrcat ${list_invert[*]} histstn_xt.nc |
---|
1707 | |
---|
1708 | # Re-ivert file |
---|
1709 | IGCM_sys_ncpdq -a time_counter,x -a time_counter,presnivs,x histstn_xt.nc ${file_out} |
---|
1710 | |
---|
1711 | # Station re-ordering is too expansive to be run within libIGCM |
---|
1712 | # This is due to (ncpdq - nrcat - ncpdq) I/O sequence. |
---|
1713 | # This re-ordering must be done "in memory" by the cmorization process |
---|
1714 | # Anyway this is the best sequence using (ncpdq - nrcat - ncpdq) |
---|
1715 | # BEGIN reordering |
---|
1716 | |
---|
1717 | # Only LMDZ text output contains the exact ordering of the station. |
---|
1718 | # We isolate this in the code below: |
---|
1719 | # 0 38 -157.5000000000000 70.98591549295774 |
---|
1720 | # 0 54 27.49999999999999 67.18309859154928 |
---|
1721 | # 0 56 -62.50000000000001 82.39436619718309 |
---|
1722 | # 0 79 12.49999999999999 78.59154929577466 |
---|
1723 | # 0 116 -165.0000000000000 76.05633802816901 |
---|
1724 | # 0 117 130.0000000000000 70.98591549295774 |
---|
1725 | # 0 118 110.0000000000000 87.46478873239437 |
---|
1726 | # 1 40 4.999999999999995 51.97183098591550 |
---|
1727 | # typeset iStation iProc list_opt file_in file_out prefix_invert |
---|
1728 | # typeset -Z4 j4 |
---|
1729 | # typeset -Z3 j3 |
---|
1730 | |
---|
1731 | # unset list_opt |
---|
1732 | # set +A list_opt $@ |
---|
1733 | |
---|
1734 | # Filename after rebuild |
---|
1735 | # file_out=${list_opt[0]} |
---|
1736 | # Prefix of output files |
---|
1737 | # prefix_invert=$( basename ${file_out} .nc ) |
---|
1738 | # Number of procs |
---|
1739 | # num_proc=$( grep -i mpi_size ${PREFIX}_${Exe_Output} | wc -l ) |
---|
1740 | |
---|
1741 | # iProc=0 |
---|
1742 | # while [ ${iProc} -lt ${num_proc} ] ; do |
---|
1743 | # Array containing Station as a number |
---|
1744 | # unset proc_stn |
---|
1745 | # set +A proc_stn $( grep "iophy_mpi rank ip lon lat $iProc" ${PREFIX}_${Exe_Output} | sed -e "s/iophy_mpi rank ip lon lat //g" | gawk ' {print $2}' ) |
---|
1746 | # Number of stations produced by processor proc |
---|
1747 | # stationLast=${#proc_stn[*]} |
---|
1748 | # Proc number on 4 digits |
---|
1749 | # j4=${iProc} |
---|
1750 | # Init |
---|
1751 | # iStation=0 |
---|
1752 | # while [ ${iStation} -lt ${stationLast} ] ; do |
---|
1753 | # Station number on 3 digits |
---|
1754 | # j3=${proc_stn[${iStation}]} |
---|
1755 | # Extract station |
---|
1756 | # Invert Axis : t,x -> x,t |
---|
1757 | # t,pres,x -> x,t,pres |
---|
1758 | # So that we can concatenate along x |
---|
1759 | # IGCM_sys_ncpdq -a x,time_counter -a x,time_counter,presnivs -d x,$iStation,$iStation ${prefix_invert}_${j4}.nc ${prefix_invert}_stn_${j3}.nc |
---|
1760 | # (( iStation = iStation + 1 )) |
---|
1761 | # done |
---|
1762 | # (( iProc = iProc + 1 )) |
---|
1763 | # done |
---|
1764 | |
---|
1765 | # Concatenate all station along x |
---|
1766 | # IGCM_sys_ncrcat ${prefix_invert}_stn_???.nc ${prefix_invert}_xt.nc |
---|
1767 | |
---|
1768 | # Re-invert file |
---|
1769 | # IGCM_sys_ncpdq -a time_counter,x -a time_counter,presnivs,x ${prefix_invert}_xt.nc ${file_out} |
---|
1770 | |
---|
1771 | # END reordering |
---|
1772 | |
---|
1773 | IGCM_debug_PopStack "IGCM_sys_rebuild_station" |
---|
1774 | } |
---|
1775 | |
---|
1776 | ############################################################ |
---|
1777 | # Activate Running Environnment Variables |
---|
1778 | |
---|
1779 | #D-#================================================== |
---|
1780 | #D-function IGCM_sys_desactiv_variables |
---|
1781 | #D-* Purpose: set environement variables prior to execution |
---|
1782 | #D-* Examples: |
---|
1783 | #D- |
---|
1784 | function IGCM_sys_activ_variables { |
---|
1785 | IGCM_debug_PushStack "IGCM_sys_activ_variables" |
---|
1786 | if ( $DEBUG_sys ) ; then |
---|
1787 | echo "IGCM_sys_activ_variables" |
---|
1788 | fi |
---|
1789 | |
---|
1790 | # -------------------------------------------------------------------- |
---|
1791 | #D- MPI specifications |
---|
1792 | # -------------------------------------------------------------------- |
---|
1793 | |
---|
1794 | # -------------------------------------------------------------------- |
---|
1795 | #D- Other specifications |
---|
1796 | # -------------------------------------------------------------------- |
---|
1797 | |
---|
1798 | ulimit -s unlimited |
---|
1799 | |
---|
1800 | ## to be done only one time |
---|
1801 | ## export LD_LIBRARY_PATH=${LD_LIBRARY_PATH}:/smplocal/pub/NetCDF/4.1.3/lib:/smplocal/pub/HDF5/1.8.9/seq/lib |
---|
1802 | echo ${LD_LIBRARY_PATH} | grep -i netcdf >/dev/null 2>&1 || export LD_LIBRARY_PATH=${LD_LIBRARY_PATH}:/smplocal/pub/NetCDF/4.1.3/lib:/smplocal/pub/HDF5/1.8.9/seq/lib |
---|
1803 | IGCM_debug_Print 1 "set LD_LIBRARY_PATH=${LD_LIBRARY_PATH}" |
---|
1804 | |
---|
1805 | export MP_STDOUTMODE=combined |
---|
1806 | IGCM_debug_Print 1 "set MP_STDOUTMODE=${MP_STDOUTMODE}" |
---|
1807 | |
---|
1808 | IGCM_debug_PopStack "IGCM_sys_activ_variables" |
---|
1809 | } |
---|
1810 | |
---|
1811 | ############################################################ |
---|
1812 | # Desactivate Running Environnment Variables |
---|
1813 | |
---|
1814 | #D-#================================================== |
---|
1815 | #D-function IGCM_sys_desactiv_variables |
---|
1816 | #D-* Purpose: unset environement variables after execution |
---|
1817 | #D-* Examples: |
---|
1818 | #D- |
---|
1819 | function IGCM_sys_desactiv_variables { |
---|
1820 | IGCM_debug_PushStack "IGCM_sys_desactiv_variables" |
---|
1821 | if ( $DEBUG_sys ) ; then |
---|
1822 | echo "IGCM_sys_desactiv_variables" |
---|
1823 | fi |
---|
1824 | # -------------------------------------------------------------------- |
---|
1825 | #D- MPI specifications |
---|
1826 | # -------------------------------------------------------------------- |
---|
1827 | |
---|
1828 | # -------------------------------------------------------------------- |
---|
1829 | #D- Other specifications |
---|
1830 | # -------------------------------------------------------------------- |
---|
1831 | |
---|
1832 | IGCM_debug_PopStack "IGCM_sys_desactiv_variables" |
---|
1833 | } |
---|
1834 | |
---|
1835 | ############################################################ |
---|
1836 | # Build MPI/OMP scripts run file (dummy function) |
---|
1837 | |
---|
1838 | #D-#================================================== |
---|
1839 | #D-function IGCM_sys_build_run_file |
---|
1840 | #D-* Purpose: build run file (deprecated) |
---|
1841 | #D-* Examples: |
---|
1842 | #D- |
---|
1843 | function IGCM_sys_build_run_file { |
---|
1844 | |
---|
1845 | IGCM_debug_Print 3 " dummy function : IGCM_sys_build_run_file " |
---|
1846 | |
---|
1847 | } |
---|
1848 | |
---|
1849 | ############################################################ |
---|
1850 | # Build MPI/OMP scripts |
---|
1851 | |
---|
1852 | #D-#================================================== |
---|
1853 | #D-function IGCM_sys_build_execution_scripts |
---|
1854 | #D-* Purpose: build execution scripts to be launch by ${HOST_MPIRUN_COMMAND} |
---|
1855 | #D-* Examples: |
---|
1856 | #D- |
---|
1857 | function IGCM_sys_build_execution_scripts |
---|
1858 | { |
---|
1859 | IGCM_debug_PushStack "IGCM_sys_build_execution_scripts" $@ |
---|
1860 | if ( $DEBUG_sys ) ; then |
---|
1861 | echo "IGCM_sys_build_execution_scripts " $@ |
---|
1862 | fi |
---|
1863 | |
---|
1864 | EXECUTION=${HOST_MPIRUN_COMMAND} |
---|
1865 | |
---|
1866 | if ( ${OK_PARA_MPMD} ) ; then |
---|
1867 | |
---|
1868 | if [ -f run_file ] ; then |
---|
1869 | IGCM_sys_Rm -f run_file |
---|
1870 | fi |
---|
1871 | touch run_file |
---|
1872 | |
---|
1873 | # run_file construction |
---|
1874 | |
---|
1875 | # Then first loop on the components for the coupler ie oasis |
---|
1876 | |
---|
1877 | ### the coupler ie oasis must be the first one |
---|
1878 | for comp in ${config_ListOfComponents[*]} ; do |
---|
1879 | |
---|
1880 | eval ExeNameIn=\${config_Executable_${comp}[0]} |
---|
1881 | eval ExeNameOut=\${config_Executable_${comp}[1]} |
---|
1882 | |
---|
1883 | # for CPL component only |
---|
1884 | if [ "X${comp}" = "XCPL" ] ; then |
---|
1885 | |
---|
1886 | eval comp_proc_mpi_loc=\${${comp}_PROC_MPI} |
---|
1887 | eval comp_proc_omp_loc=\${${comp}_PROC_OMP} |
---|
1888 | |
---|
1889 | if ( ${OK_PARA_MPI} ) ; then |
---|
1890 | (( mpi_count = 1 )) |
---|
1891 | until [ ${mpi_count} -gt ${comp_proc_mpi_loc} ] ; do |
---|
1892 | echo "./${ExeNameOut}" >> run_file |
---|
1893 | (( mpi_count = mpi_count + 1 )) |
---|
1894 | done |
---|
1895 | else |
---|
1896 | echo "./${ExeNameOut} " >> run_file |
---|
1897 | fi |
---|
1898 | fi |
---|
1899 | done |
---|
1900 | |
---|
1901 | # Then second loop on the components |
---|
1902 | |
---|
1903 | for comp in ${config_ListOfComponents[*]} ; do |
---|
1904 | |
---|
1905 | eval ExeNameIn=\${config_Executable_${comp}[0]} |
---|
1906 | eval ExeNameOut=\${config_Executable_${comp}[1]} |
---|
1907 | |
---|
1908 | # Only if we really have an executable for the component and not the coupler ie oasis: |
---|
1909 | if ( [ "X${ExeNameOut}" != X\"\" ] && [ "X${comp}" != "XCPL" ] ) ; then |
---|
1910 | |
---|
1911 | eval comp_proc_mpi_loc=\${${comp}_PROC_MPI} |
---|
1912 | eval comp_proc_omp_loc=\${${comp}_PROC_OMP} |
---|
1913 | |
---|
1914 | if ( ${OK_PARA_MPI} ) ; then |
---|
1915 | (( mpi_count = 1 )) |
---|
1916 | until [ ${mpi_count} -gt ${comp_proc_mpi_loc} ] ; do |
---|
1917 | echo "./${ExeNameOut}" >> run_file |
---|
1918 | (( mpi_count = mpi_count + 1 )) |
---|
1919 | done |
---|
1920 | else |
---|
1921 | echo "./${ExeNameOut} " >> run_file |
---|
1922 | fi |
---|
1923 | fi |
---|
1924 | done |
---|
1925 | |
---|
1926 | EXECUTION="${HOST_MPIRUN_COMMAND} -pgmmodel mpmd -cmdfile ./run_file" |
---|
1927 | |
---|
1928 | IGCM_sys_Chmod u+x run_file |
---|
1929 | if ( $DEBUG_sys ) ; then |
---|
1930 | echo "run_file contains : " |
---|
1931 | cat run_file |
---|
1932 | fi |
---|
1933 | |
---|
1934 | else # Only one executable. launch it. |
---|
1935 | |
---|
1936 | for comp in ${config_ListOfComponents[*]} ; do |
---|
1937 | |
---|
1938 | # Only if we really have an executable for the component : |
---|
1939 | eval ExeNameOut=\${config_Executable_${comp}[1]} |
---|
1940 | if ( [ "X${ExeNameOut}" != X\"\" ] && [ "X${ExeNameOut}" != "Xinca.dat" ] ) ; then |
---|
1941 | |
---|
1942 | if ( ${OK_PARA_OMP} ) ; then |
---|
1943 | eval comp_proc_omp_loc=\${${comp}_PROC_OMP} |
---|
1944 | export KMP_STACKSIZE=200m |
---|
1945 | #export KMP_LIBRARY=turnaround |
---|
1946 | #echo "export KMP_STACKSIZE=3g" >> script_${ExeNameOut}.ksh |
---|
1947 | #echo "export KMP_LIBRARY=turnaround" >> script_${ExeNameOut}.ksh |
---|
1948 | #echo "export MKL_SERIAL=YES" >> script_${ExeNameOut}.ksh |
---|
1949 | fi |
---|
1950 | |
---|
1951 | EXECUTION="${HOST_MPIRUN_COMMAND} ./${ExeNameOut}" |
---|
1952 | fi |
---|
1953 | |
---|
1954 | done |
---|
1955 | |
---|
1956 | fi |
---|
1957 | |
---|
1958 | IGCM_debug_Print 1 "sys ada : execution command is " |
---|
1959 | IGCM_debug_Print 1 "$EXECUTION" |
---|
1960 | |
---|
1961 | IGCM_debug_PopStack "IGCM_sys_build_execution_scripts" |
---|
1962 | } |
---|
1963 | |
---|
1964 | #D-#================================================== |
---|
1965 | #D-function IGCM_sys_check_path |
---|
1966 | #D-* Purpose: check that RUN_DIR_PATH that will be removed on some machine |
---|
1967 | #D-* do not point to an important use directory. Stop immediately in that case. |
---|
1968 | #D-* Examples: |
---|
1969 | #D- |
---|
1970 | function IGCM_sys_check_path { |
---|
1971 | IGCM_debug_PushStack "IGCM_sys_check_path" |
---|
1972 | if ( $DEBUG_sys ) ; then |
---|
1973 | echo "IGCM_sys_check_path" |
---|
1974 | fi |
---|
1975 | |
---|
1976 | if ( [ X${RUN_DIR_PATH} = X${HOME} ] || [ X${RUN_DIR_PATH} = X${WORKDIR} ] || [ X${RUN_DIR_PATH} = X${HOMEGAYA} ] ) ; then |
---|
1977 | IGCM_debug_Print 1 "Variable RUN_DIR_PATH is pointing to an important directory : ${RUN_DIR_PATH}" |
---|
1978 | IGCM_debug_Print 1 "Please check the RUN_DIR_PATH definition in your Job : Job_${config_UserChoices_JobName}" |
---|
1979 | IGCM_debug_Exit "This will stop the job" |
---|
1980 | fi |
---|
1981 | IGCM_debug_PopStack "IGCM_sys_check_path" |
---|
1982 | } |
---|
1983 | |
---|
1984 | #D-#================================================== |
---|
1985 | #D-function IGCM_sys_check_quota |
---|
1986 | #D-* Purpose: check user quota. Stop the simulation if quota above 90% |
---|
1987 | #D-* Examples: |
---|
1988 | #D- |
---|
1989 | function IGCM_sys_check_quota { |
---|
1990 | IGCM_debug_PushStack "IGCM_sys_check_quota" |
---|
1991 | if ( $DEBUG_sys ) ; then |
---|
1992 | echo "IGCM_sys_check_quota" |
---|
1993 | fi |
---|
1994 | # Limit of quota (in %) |
---|
1995 | limit_quota=90 |
---|
1996 | |
---|
1997 | # Check of the volume |
---|
1998 | volume_quota=$(quota_u -w 2>/dev/null| grep 'Quota soft' | gawk '{print $5}') |
---|
1999 | if [ ! X${volume_quota} = X ] ; then |
---|
2000 | quota_volume=${volume_quota%%\%} |
---|
2001 | # echo $quota_volume |
---|
2002 | if [ $(echo "${quota_volume} > ${limit_quota}" | bc) -eq 1 ] ; then |
---|
2003 | IGCM_debug_Print 1 "Please, check your quota of volume on workgpfs" |
---|
2004 | IGCM_debug_Print 1 "${quota_volume}% of your quota is used" |
---|
2005 | IGCM_debug_Print 1 "Use the quota_u -w command to check" |
---|
2006 | IGCM_debug_Print 1 "You must have more than 10% available to run" |
---|
2007 | IGCM_debug_Exit "Not enough space to run ! STOP HERE" |
---|
2008 | IGCM_debug_Verif_Exit |
---|
2009 | fi |
---|
2010 | |
---|
2011 | fi |
---|
2012 | IGCM_debug_PopStack "IGCM_sys_check_quota" |
---|
2013 | } |
---|
2014 | |
---|
2015 | #D-#================================================== |
---|
2016 | #D-function IGCM_sys_GetJobID |
---|
2017 | #D-* Purpose: Check if job_name is currently |
---|
2018 | #D- running or in queue |
---|
2019 | #D-* Examples: IGCM_sys_GetJobID ${JobName} NbRun |
---|
2020 | #D- |
---|
2021 | function IGCM_sys_GetJobID { |
---|
2022 | IGCM_debug_PushStack "IGCM_sys_GetJobID" |
---|
2023 | if ( $DEBUG_sys ) ; then |
---|
2024 | echo "IGCM_sys_GetJobID" |
---|
2025 | fi |
---|
2026 | |
---|
2027 | # Print only the full (-W) JobID (%id) and JobName (%jn) |
---|
2028 | ID=$( llq -u $2 -W -f %id %jn | \ |
---|
2029 | gawk -v JobName=$1 '( $NF ~ JobName ) { print $1 }' ) |
---|
2030 | |
---|
2031 | eval ${3}=${ID} |
---|
2032 | |
---|
2033 | IGCM_debug_PopStack "IGCM_sys_GetJobID" |
---|
2034 | } |
---|
2035 | |
---|
2036 | #D-#================================================== |
---|
2037 | #D-function IGCM_sys_CountJobInQueue |
---|
2038 | #D-* Purpose: Check if job_name is currently |
---|
2039 | #D- running or in queue |
---|
2040 | #D-* Examples: IGCM_sys_CountJobInQueue ${JobName} NbRun |
---|
2041 | #D- |
---|
2042 | function IGCM_sys_CountJobInQueue { |
---|
2043 | IGCM_debug_PushStack "IGCM_sys_CountJobInQueue" |
---|
2044 | if ( $DEBUG_sys ) ; then |
---|
2045 | echo "IGCM_sys_CountJobInQueue" |
---|
2046 | fi |
---|
2047 | |
---|
2048 | # Print only the full (-W) JobName (%jn) |
---|
2049 | NbRun=$( llq -W -f %jn | grep -c "$1" ) |
---|
2050 | |
---|
2051 | eval ${2}=${NbRun} |
---|
2052 | |
---|
2053 | IGCM_debug_PopStack "IGCM_sys_CountJobInQueue" |
---|
2054 | } |
---|
2055 | |
---|
2056 | #D-#================================================== |
---|
2057 | #D-function IGCM_sys_ListJobInQueue |
---|
2058 | #D-* Purpose: Check if job_name is currently |
---|
2059 | #D- running or in queue |
---|
2060 | #D-* Examples: IGCM_sys_ListJobInQueue ${User} JobNameList |
---|
2061 | #D- |
---|
2062 | function IGCM_sys_ListJobInQueue { |
---|
2063 | IGCM_debug_PushStack "IGCM_sys_ListJobInQueue" |
---|
2064 | if ( $DEBUG_sys ) ; then |
---|
2065 | echo "IGCM_sys_ListJobInQueue" |
---|
2066 | fi |
---|
2067 | |
---|
2068 | # With -W option, column width is as large as necessary |
---|
2069 | set -A JobList $( llq -u $1 -W -f %jn | head -n -2 | tail -n +3 | \ |
---|
2070 | gawk '( $1 != /TS/ && \ |
---|
2071 | $1 !~ /PACK/ && \ |
---|
2072 | $1 !~ /REBUILD/ && \ |
---|
2073 | $1 !~ /pack/ ) \ |
---|
2074 | { print $1 }' | sed -e "s/\(.*\)\.[0-9]*/\1/" ) |
---|
2075 | |
---|
2076 | eval set -A ${2} ${JobList[*]} |
---|
2077 | |
---|
2078 | IGCM_debug_PopStack "IGCM_sys_ListJobInQueue" |
---|
2079 | } |
---|
2080 | |
---|
2081 | ############################################################## |
---|
2082 | # NCO OPERATOR |
---|
2083 | |
---|
2084 | #D-#================================================== |
---|
2085 | #D-function IGCM_sys_ncap2 |
---|
2086 | #D-* Purpose: encapsulate ncap2 call so as to manage error code and retry |
---|
2087 | #D-* Examples: |
---|
2088 | #D- |
---|
2089 | function IGCM_sys_ncap2 { |
---|
2090 | IGCM_debug_PushStack "IGCM_sys_ncap2" -- $@ |
---|
2091 | if ( $DEBUG_sys ) ; then |
---|
2092 | echo "IGCM_sys_ncap2 :" $@ |
---|
2093 | fi |
---|
2094 | |
---|
2095 | typeset NB_ESSAI DELAI status i |
---|
2096 | # number of tentative |
---|
2097 | NB_ESSAI=3 |
---|
2098 | # time delay between tentative |
---|
2099 | DELAI=2 |
---|
2100 | |
---|
2101 | i=0 |
---|
2102 | while [ $i -lt $NB_ESSAI ] ; do |
---|
2103 | ncap2 "$@" > /tmp/out_command.$$ 2>&1 |
---|
2104 | status=$? |
---|
2105 | if [ ${status} -gt 0 ] ; then |
---|
2106 | IGCM_debug_Print 2 "IGCM_sys_ncap2 : error code ${status}" |
---|
2107 | cat /tmp/out_command.$$ |
---|
2108 | \rm /tmp/out_command.$$ |
---|
2109 | IGCM_debug_Print 2 "IGCM_sys_ncap2 : ${i}/${NB_ESSAI} sleep ${DELAI} seconds and try again." |
---|
2110 | sleep $DELAI |
---|
2111 | else |
---|
2112 | \rm /tmp/out_command.$$ |
---|
2113 | break |
---|
2114 | fi |
---|
2115 | (( i = i + 1 )) |
---|
2116 | done |
---|
2117 | |
---|
2118 | if [ ${status} -gt 0 ] ; then |
---|
2119 | echo "IGCM_sys_ncap2 : ncap2 error" |
---|
2120 | IGCM_debug_Exit "ncap2" |
---|
2121 | fi |
---|
2122 | |
---|
2123 | IGCM_debug_PopStack "IGCM_sys_ncap2" |
---|
2124 | } |
---|
2125 | |
---|
2126 | #D-#================================================== |
---|
2127 | #D-function IGCM_sys_ncatted |
---|
2128 | #D-* Purpose: encapsulate ncatted call so as to manage error code and retry |
---|
2129 | #D-* Examples: |
---|
2130 | #D- |
---|
2131 | function IGCM_sys_ncatted { |
---|
2132 | IGCM_debug_PushStack "IGCM_sys_ncatted" -- $@ |
---|
2133 | if ( $DEBUG_sys ) ; then |
---|
2134 | echo "IGCM_sys_ncatted :" $@ |
---|
2135 | fi |
---|
2136 | |
---|
2137 | typeset NB_ESSAI DELAI status i |
---|
2138 | # number of tentative |
---|
2139 | NB_ESSAI=3 |
---|
2140 | # time delay between tentative |
---|
2141 | DELAI=2 |
---|
2142 | |
---|
2143 | i=0 |
---|
2144 | while [ $i -lt $NB_ESSAI ] ; do |
---|
2145 | ncatted "$@" > /tmp/out_command.$$ 2>&1 |
---|
2146 | status=$? |
---|
2147 | if [ ${status} -gt 0 ] ; then |
---|
2148 | IGCM_debug_Print 2 "IGCM_sys_ncatted : error code ${status}" |
---|
2149 | cat /tmp/out_command.$$ |
---|
2150 | \rm /tmp/out_command.$$ |
---|
2151 | IGCM_debug_Print 2 "IGCM_sys_ncatted : ${i}/${NB_ESSAI} sleep ${DELAI} seconds and try again." |
---|
2152 | sleep $DELAI |
---|
2153 | else |
---|
2154 | \rm /tmp/out_command.$$ |
---|
2155 | break |
---|
2156 | fi |
---|
2157 | (( i = i + 1 )) |
---|
2158 | done |
---|
2159 | |
---|
2160 | if [ ${status} -gt 0 ] ; then |
---|
2161 | echo "IGCM_sys_ncatted : ncatted error" |
---|
2162 | IGCM_debug_Exit "ncatted" |
---|
2163 | fi |
---|
2164 | |
---|
2165 | IGCM_debug_PopStack "IGCM_sys_ncatted" |
---|
2166 | } |
---|
2167 | |
---|
2168 | #D-#================================================== |
---|
2169 | #D-function IGCM_sys_ncbo |
---|
2170 | #D-* Purpose: encapsulate ncbo call so as to manage error code and retry |
---|
2171 | #D-* Examples: |
---|
2172 | #D- |
---|
2173 | function IGCM_sys_ncbo { |
---|
2174 | IGCM_debug_PushStack "IGCM_sys_ncbo" -- $@ |
---|
2175 | if ( $DEBUG_sys ) ; then |
---|
2176 | echo "IGCM_sys_ncbo :" $@ |
---|
2177 | fi |
---|
2178 | |
---|
2179 | typeset NB_ESSAI DELAI status i |
---|
2180 | # number of tentative |
---|
2181 | NB_ESSAI=3 |
---|
2182 | # time delay between tentative |
---|
2183 | DELAI=2 |
---|
2184 | |
---|
2185 | i=0 |
---|
2186 | while [ $i -lt $NB_ESSAI ] ; do |
---|
2187 | ncbo $@ > /tmp/out_command.$$ 2>&1 |
---|
2188 | status=$? |
---|
2189 | if [ ${status} -gt 0 ] ; then |
---|
2190 | IGCM_debug_Print 2 "IGCM_sys_ncbo : error code ${status}" |
---|
2191 | cat /tmp/out_command.$$ |
---|
2192 | \rm /tmp/out_command.$$ |
---|
2193 | IGCM_debug_Print 2 "IGCM_sys_ncbo : ${i}/${NB_ESSAI} sleep ${DELAI} seconds and try again." |
---|
2194 | sleep $DELAI |
---|
2195 | else |
---|
2196 | \rm /tmp/out_command.$$ |
---|
2197 | break |
---|
2198 | fi |
---|
2199 | (( i = i + 1 )) |
---|
2200 | done |
---|
2201 | |
---|
2202 | if [ ${status} -gt 0 ] ; then |
---|
2203 | echo "IGCM_sys_ncbo : ncbo error" |
---|
2204 | IGCM_debug_Exit "ncbo" |
---|
2205 | fi |
---|
2206 | |
---|
2207 | IGCM_debug_PopStack "IGCM_sys_ncbo" |
---|
2208 | } |
---|
2209 | |
---|
2210 | #D-#================================================== |
---|
2211 | #D-function IGCM_sys_ncdif |
---|
2212 | #D-* Purpose: encapsulate ncdiff call so as to manage error code and retry |
---|
2213 | #D-* Examples: |
---|
2214 | #D- |
---|
2215 | function IGCM_sys_ncdiff { |
---|
2216 | IGCM_debug_PushStack "IGCM_sys_ncdiff" -- $@ |
---|
2217 | if ( $DEBUG_sys ) ; then |
---|
2218 | echo "IGCM_sys_ncdiff :" $@ |
---|
2219 | fi |
---|
2220 | |
---|
2221 | typeset NB_ESSAI DELAI status i |
---|
2222 | # number of tentative |
---|
2223 | NB_ESSAI=3 |
---|
2224 | # time delay between tentative |
---|
2225 | DELAI=2 |
---|
2226 | |
---|
2227 | i=0 |
---|
2228 | while [ $i -lt $NB_ESSAI ] ; do |
---|
2229 | ncdiff $@ > /tmp/out_command.$$ 2>&1 |
---|
2230 | status=$? |
---|
2231 | if [ ${status} -gt 0 ] ; then |
---|
2232 | IGCM_debug_Print 2 "IGCM_sys_ncdiff : error code ${status}" |
---|
2233 | cat /tmp/out_command.$$ |
---|
2234 | \rm /tmp/out_command.$$ |
---|
2235 | IGCM_debug_Print 2 "IGCM_sys_ncdiff : ${i}/${NB_ESSAI} sleep ${DELAI} seconds and try again." |
---|
2236 | sleep $DELAI |
---|
2237 | else |
---|
2238 | \rm /tmp/out_command.$$ |
---|
2239 | break |
---|
2240 | fi |
---|
2241 | (( i = i + 1 )) |
---|
2242 | done |
---|
2243 | |
---|
2244 | if [ ${status} -gt 0 ] ; then |
---|
2245 | echo "IGCM_sys_ncdiff : ncdiff error" |
---|
2246 | IGCM_debug_Exit "ncdiff" |
---|
2247 | fi |
---|
2248 | |
---|
2249 | IGCM_debug_PopStack "IGCM_sys_ncdiff" |
---|
2250 | } |
---|
2251 | |
---|
2252 | #D-#================================================== |
---|
2253 | #D-function IGCM_sys_ncea |
---|
2254 | #D-* Purpose: encapsulate ncea call so as to manage error code and retry |
---|
2255 | #D-* Examples: |
---|
2256 | #D- |
---|
2257 | function IGCM_sys_ncea { |
---|
2258 | IGCM_debug_PushStack "IGCM_sys_ncea" -- $@ |
---|
2259 | if ( $DEBUG_sys ) ; then |
---|
2260 | echo "IGCM_sys_ncea :" $@ |
---|
2261 | fi |
---|
2262 | |
---|
2263 | typeset NB_ESSAI DELAI status i |
---|
2264 | # number of tentative |
---|
2265 | NB_ESSAI=3 |
---|
2266 | # time delay between tentative |
---|
2267 | DELAI=2 |
---|
2268 | |
---|
2269 | i=0 |
---|
2270 | while [ $i -lt $NB_ESSAI ] ; do |
---|
2271 | ncea $@ > /tmp/out_command.$$ 2>&1 |
---|
2272 | status=$? |
---|
2273 | if [ ${status} -gt 0 ] ; then |
---|
2274 | IGCM_debug_Print 2 "IGCM_sys_ncea : error code ${status}" |
---|
2275 | cat /tmp/out_command.$$ |
---|
2276 | \rm /tmp/out_command.$$ |
---|
2277 | IGCM_debug_Print 2 "IGCM_sys_ncea : ${i}/${NB_ESSAI} sleep ${DELAI} seconds and try again." |
---|
2278 | sleep $DELAI |
---|
2279 | else |
---|
2280 | \rm /tmp/out_command.$$ |
---|
2281 | break |
---|
2282 | fi |
---|
2283 | (( i = i + 1 )) |
---|
2284 | done |
---|
2285 | |
---|
2286 | if [ ${status} -gt 0 ] ; then |
---|
2287 | echo "IGCM_sys_ncea : ncea error" |
---|
2288 | IGCM_debug_Exit "ncea" |
---|
2289 | fi |
---|
2290 | |
---|
2291 | IGCM_debug_PopStack "IGCM_sys_ncea" |
---|
2292 | } |
---|
2293 | |
---|
2294 | #D-#================================================== |
---|
2295 | #D-function IGCM_sys_ncecat |
---|
2296 | #D-* Purpose: encapsulate ncecat call so as to manage error code and retry |
---|
2297 | #D-* Examples: |
---|
2298 | #D- |
---|
2299 | function IGCM_sys_ncecat { |
---|
2300 | IGCM_debug_PushStack "IGCM_sys_ncecat" -- $@ |
---|
2301 | if ( $DEBUG_sys ) ; then |
---|
2302 | echo "IGCM_sys_ncecat :" $@ |
---|
2303 | fi |
---|
2304 | |
---|
2305 | typeset NB_ESSAI DELAI status i |
---|
2306 | # number of tentative |
---|
2307 | NB_ESSAI=3 |
---|
2308 | # time delay between tentative |
---|
2309 | DELAI=2 |
---|
2310 | |
---|
2311 | i=0 |
---|
2312 | while [ $i -lt $NB_ESSAI ] ; do |
---|
2313 | ncecat $@ > /tmp/out_command.$$ 2>&1 |
---|
2314 | status=$? |
---|
2315 | if [ ${status} -gt 0 ] ; then |
---|
2316 | IGCM_debug_Print 2 "IGCM_sys_ncecat : error code ${status}" |
---|
2317 | cat /tmp/out_command.$$ |
---|
2318 | \rm /tmp/out_command.$$ |
---|
2319 | IGCM_debug_Print 2 "IGCM_sys_ncecat : ${i}/${NB_ESSAI} sleep ${DELAI} seconds and try again." |
---|
2320 | sleep $DELAI |
---|
2321 | else |
---|
2322 | \rm /tmp/out_command.$$ |
---|
2323 | break |
---|
2324 | fi |
---|
2325 | (( i = i + 1 )) |
---|
2326 | done |
---|
2327 | |
---|
2328 | if [ ${status} -gt 0 ] ; then |
---|
2329 | echo "IGCM_sys_ncecat : ncecat error" |
---|
2330 | IGCM_debug_Exit "ncecat" |
---|
2331 | fi |
---|
2332 | |
---|
2333 | IGCM_debug_PopStack "IGCM_sys_ncecat" |
---|
2334 | } |
---|
2335 | |
---|
2336 | #D-#================================================== |
---|
2337 | #D-function IGCM_sys_ncflint |
---|
2338 | #D-* Purpose: encapsulate ncflint call so as to manage error code and retry |
---|
2339 | #D-* Examples: |
---|
2340 | #D- |
---|
2341 | function IGCM_sys_ncflint { |
---|
2342 | IGCM_debug_PushStack "IGCM_sys_ncflint" -- $@ |
---|
2343 | if ( $DEBUG_sys ) ; then |
---|
2344 | echo "IGCM_sys_ncflint :" $@ |
---|
2345 | fi |
---|
2346 | |
---|
2347 | typeset NB_ESSAI DELAI status i |
---|
2348 | # number of tentative |
---|
2349 | NB_ESSAI=3 |
---|
2350 | # time delay between tentative |
---|
2351 | DELAI=2 |
---|
2352 | |
---|
2353 | i=0 |
---|
2354 | while [ $i -lt $NB_ESSAI ] ; do |
---|
2355 | ncflint $@ > /tmp/out_command.$$ 2>&1 |
---|
2356 | status=$? |
---|
2357 | if [ ${status} -gt 0 ] ; then |
---|
2358 | IGCM_debug_Print 2 "IGCM_sys_ncflint : error code ${status}" |
---|
2359 | cat /tmp/out_command.$$ |
---|
2360 | \rm /tmp/out_command.$$ |
---|
2361 | IGCM_debug_Print 2 "IGCM_sys_ncflint : ${i}/${NB_ESSAI} sleep ${DELAI} seconds and try again." |
---|
2362 | sleep $DELAI |
---|
2363 | else |
---|
2364 | \rm /tmp/out_command.$$ |
---|
2365 | break |
---|
2366 | fi |
---|
2367 | (( i = i + 1 )) |
---|
2368 | done |
---|
2369 | |
---|
2370 | if [ ${status} -gt 0 ] ; then |
---|
2371 | echo "IGCM_sys_ncflint : ncflint error" |
---|
2372 | IGCM_debug_Exit "ncflint" |
---|
2373 | fi |
---|
2374 | |
---|
2375 | IGCM_debug_PopStack "IGCM_sys_ncflint" |
---|
2376 | } |
---|
2377 | |
---|
2378 | #D-#================================================== |
---|
2379 | #D-function IGCM_sys_ncks |
---|
2380 | #D-* Purpose: encapsulate ncks call so as to manage error code and retry |
---|
2381 | #D-* Examples: |
---|
2382 | #D- |
---|
2383 | function IGCM_sys_ncks { |
---|
2384 | IGCM_debug_PushStack "IGCM_sys_ncks" -- $@ |
---|
2385 | if ( $DEBUG_sys ) ; then |
---|
2386 | echo "IGCM_sys_ncks :" $@ |
---|
2387 | fi |
---|
2388 | |
---|
2389 | typeset NB_ESSAI DELAI status i |
---|
2390 | # number of tentative |
---|
2391 | NB_ESSAI=3 |
---|
2392 | # time delay between tentative |
---|
2393 | DELAI=2 |
---|
2394 | |
---|
2395 | i=0 |
---|
2396 | while [ $i -lt $NB_ESSAI ] ; do |
---|
2397 | ncks $@ > /tmp/out_command.$$ 2>&1 |
---|
2398 | status=$? |
---|
2399 | if [ ${status} -gt 0 ] ; then |
---|
2400 | IGCM_debug_Print 2 "IGCM_sys_ncks : error code ${status}" |
---|
2401 | cat /tmp/out_command.$$ |
---|
2402 | \rm /tmp/out_command.$$ |
---|
2403 | IGCM_debug_Print 2 "IGCM_sys_ncks : ${i}/${NB_ESSAI} sleep ${DELAI} seconds and try again." |
---|
2404 | sleep $DELAI |
---|
2405 | else |
---|
2406 | \rm /tmp/out_command.$$ |
---|
2407 | break |
---|
2408 | fi |
---|
2409 | (( i = i + 1 )) |
---|
2410 | done |
---|
2411 | |
---|
2412 | if [ ${status} -gt 0 ] ; then |
---|
2413 | echo "IGCM_sys_ncks : ncks error" |
---|
2414 | IGCM_debug_Exit "ncks" |
---|
2415 | fi |
---|
2416 | |
---|
2417 | IGCM_debug_PopStack "IGCM_sys_ncks" |
---|
2418 | } |
---|
2419 | |
---|
2420 | #D-#================================================== |
---|
2421 | #D-function IGCM_sys_ncpdq |
---|
2422 | #D-* Purpose: encapsulate ncpdq call so as to manage error code and retry |
---|
2423 | #D-* Examples: |
---|
2424 | #D- |
---|
2425 | function IGCM_sys_ncpdq { |
---|
2426 | IGCM_debug_PushStack "IGCM_sys_ncpdq" -- $@ |
---|
2427 | if ( $DEBUG_sys ) ; then |
---|
2428 | echo "IGCM_sys_ncpdq :" $@ |
---|
2429 | fi |
---|
2430 | |
---|
2431 | typeset NB_ESSAI DELAI status i |
---|
2432 | # number of tentative |
---|
2433 | NB_ESSAI=3 |
---|
2434 | # time delay between tentative |
---|
2435 | DELAI=2 |
---|
2436 | |
---|
2437 | i=0 |
---|
2438 | while [ $i -lt $NB_ESSAI ] ; do |
---|
2439 | ncpdq $@ > /tmp/out_command.$$ 2>&1 |
---|
2440 | status=$? |
---|
2441 | if [ ${status} -gt 0 ] ; then |
---|
2442 | IGCM_debug_Print 2 "IGCM_sys_ncpdq : error code ${status}" |
---|
2443 | cat /tmp/out_command.$$ |
---|
2444 | \rm /tmp/out_command.$$ |
---|
2445 | IGCM_debug_Print 2 "IGCM_sys_ncpdq : ${i}/${NB_ESSAI} sleep ${DELAI} seconds and try again." |
---|
2446 | sleep $DELAI |
---|
2447 | else |
---|
2448 | \rm /tmp/out_command.$$ |
---|
2449 | break |
---|
2450 | fi |
---|
2451 | (( i = i + 1 )) |
---|
2452 | done |
---|
2453 | |
---|
2454 | if [ ${status} -gt 0 ] ; then |
---|
2455 | echo "IGCM_sys_ncpdq : ncpdq error" |
---|
2456 | IGCM_debug_Exit "ncpdq" |
---|
2457 | fi |
---|
2458 | |
---|
2459 | IGCM_debug_PopStack "IGCM_sys_ncpdq" |
---|
2460 | } |
---|
2461 | |
---|
2462 | #D-#================================================== |
---|
2463 | #D-function IGCM_sys_ncra |
---|
2464 | #D-* Purpose: encapsulate ncra call so as to manage error code and retry |
---|
2465 | #D-* Examples: |
---|
2466 | #D- |
---|
2467 | function IGCM_sys_ncra { |
---|
2468 | IGCM_debug_PushStack "IGCM_sys_ncra" -- $@ |
---|
2469 | if ( $DEBUG_sys ) ; then |
---|
2470 | echo "IGCM_sys_ncra :" $@ |
---|
2471 | fi |
---|
2472 | |
---|
2473 | typeset NB_ESSAI DELAI status i |
---|
2474 | # number of tentative |
---|
2475 | NB_ESSAI=3 |
---|
2476 | # time delay between tentative |
---|
2477 | DELAI=2 |
---|
2478 | |
---|
2479 | i=0 |
---|
2480 | while [ $i -lt $NB_ESSAI ] ; do |
---|
2481 | ncra $@ > /tmp/out_command.$$ 2>&1 |
---|
2482 | status=$? |
---|
2483 | if [ ${status} -gt 0 ] ; then |
---|
2484 | IGCM_debug_Print 2 "IGCM_sys_ncra : error code ${status}" |
---|
2485 | cat /tmp/out_command.$$ |
---|
2486 | \rm /tmp/out_command.$$ |
---|
2487 | IGCM_debug_Print 2 "IGCM_sys_ncra : ${i}/${NB_ESSAI} sleep ${DELAI} seconds and try again." |
---|
2488 | sleep $DELAI |
---|
2489 | else |
---|
2490 | \rm /tmp/out_command.$$ |
---|
2491 | break |
---|
2492 | fi |
---|
2493 | (( i = i + 1 )) |
---|
2494 | done |
---|
2495 | |
---|
2496 | if [ ${status} -gt 0 ] ; then |
---|
2497 | echo "IGCM_sys_ncra : ncra error" |
---|
2498 | IGCM_debug_Exit "ncra" |
---|
2499 | fi |
---|
2500 | |
---|
2501 | IGCM_debug_PopStack "IGCM_sys_ncra" |
---|
2502 | } |
---|
2503 | |
---|
2504 | #D-#================================================== |
---|
2505 | #D-function IGCM_sys_ncrcat |
---|
2506 | #D-* Purpose: encapsulate ncrcat call so as to manage error code and retry |
---|
2507 | #D-* Examples: |
---|
2508 | #D- |
---|
2509 | function IGCM_sys_ncrcat { |
---|
2510 | IGCM_debug_PushStack "IGCM_sys_ncrcat" -- $@ |
---|
2511 | if ( $DEBUG_sys ) ; then |
---|
2512 | echo "IGCM_sys_ncrcat :" $@ |
---|
2513 | fi |
---|
2514 | |
---|
2515 | typeset NB_ESSAI DELAI status i lastArg |
---|
2516 | # number of tentative |
---|
2517 | NB_ESSAI=3 |
---|
2518 | # time delay between tentative |
---|
2519 | DELAI=2 |
---|
2520 | |
---|
2521 | i=0 |
---|
2522 | while [ $i -lt $NB_ESSAI ] ; do |
---|
2523 | ncrcat $@ > /tmp/out_command.$$ 2>&1 |
---|
2524 | status=$? |
---|
2525 | if [ ${status} -gt 0 ] ; then |
---|
2526 | IGCM_debug_Print 2 "IGCM_sys_ncrcat : error code ${status}" |
---|
2527 | cat /tmp/out_command.$$ |
---|
2528 | \rm /tmp/out_command.$$ |
---|
2529 | IGCM_debug_Print 2 "IGCM_sys_ncrcat : ${i}/${NB_ESSAI} sleep ${DELAI} seconds and try again." |
---|
2530 | sleep $DELAI |
---|
2531 | elif [ ! "X$( grep "WARNING Intra-file non-monotonicity" /tmp/out_command.$$ )" = "X" ] ; then |
---|
2532 | IGCM_debug_Print 2 "IGCM_sys_ncrcat : WARNING Intra-file non-monotonicity" |
---|
2533 | cat /tmp/out_command.$$ |
---|
2534 | # remove files having corrupted time axis |
---|
2535 | eval lastArg=\${$#} |
---|
2536 | IGCM_debug_Print 2 "IGCM_sys_ncrcat : Delete ${lastArg}" |
---|
2537 | \rm ${lastArg} |
---|
2538 | \rm /tmp/out_command.$$ |
---|
2539 | IGCM_debug_Print 2 "IGCM_sys_ncrcat : ${i}/${NB_ESSAI} sleep ${DELAI} seconds and try again." |
---|
2540 | sleep $DELAI |
---|
2541 | else |
---|
2542 | \rm /tmp/out_command.$$ |
---|
2543 | break |
---|
2544 | fi |
---|
2545 | (( i = i + 1 )) |
---|
2546 | done |
---|
2547 | |
---|
2548 | if [ ${status} -gt 0 ] ; then |
---|
2549 | echo "IGCM_sys_ncrcat : ncrcat error" |
---|
2550 | #IGCM_debug_Exit "ncrcat" |
---|
2551 | fi |
---|
2552 | |
---|
2553 | IGCM_debug_PopStack "IGCM_sys_ncrcat" |
---|
2554 | } |
---|
2555 | |
---|
2556 | #D-#================================================== |
---|
2557 | #D-function IGCM_sys_ncrename |
---|
2558 | #D-* Purpose: encapsulate ncrename call so as to manage error code and retry |
---|
2559 | #D-* Examples: |
---|
2560 | #D- |
---|
2561 | function IGCM_sys_ncrename { |
---|
2562 | IGCM_debug_PushStack "IGCM_sys_ncrename" -- $@ |
---|
2563 | if ( $DEBUG_sys ) ; then |
---|
2564 | echo "IGCM_sys_ncrename :" $@ |
---|
2565 | fi |
---|
2566 | |
---|
2567 | typeset NB_ESSAI DELAI status i |
---|
2568 | # number of tentative |
---|
2569 | NB_ESSAI=3 |
---|
2570 | # time delay between tentative |
---|
2571 | DELAI=2 |
---|
2572 | |
---|
2573 | i=0 |
---|
2574 | while [ $i -lt $NB_ESSAI ] ; do |
---|
2575 | ncrename $@ > /tmp/out_command.$$ 2>&1 |
---|
2576 | status=$? |
---|
2577 | if [ ${status} -gt 0 ] ; then |
---|
2578 | IGCM_debug_Print 2 "IGCM_sys_ncrename : error code ${status}" |
---|
2579 | cat /tmp/out_command.$$ |
---|
2580 | \rm /tmp/out_command.$$ |
---|
2581 | IGCM_debug_Print 2 "IGCM_sys_ncrename : ${i}/${NB_ESSAI} sleep ${DELAI} seconds and try again." |
---|
2582 | sleep $DELAI |
---|
2583 | else |
---|
2584 | \rm /tmp/out_command.$$ |
---|
2585 | break |
---|
2586 | fi |
---|
2587 | (( i = i + 1 )) |
---|
2588 | done |
---|
2589 | |
---|
2590 | if [ ${status} -gt 0 ] ; then |
---|
2591 | echo "IGCM_sys_ncrename : ncrename error" |
---|
2592 | IGCM_debug_Exit "ncrename" |
---|
2593 | fi |
---|
2594 | |
---|
2595 | IGCM_debug_PopStack "IGCM_sys_ncrename" |
---|
2596 | } |
---|
2597 | |
---|
2598 | #D-#================================================== |
---|
2599 | #D-function IGCM_sys_ncwa |
---|
2600 | #D-* Purpose: encapsulate ncwa call so as to manage error code and retry |
---|
2601 | #D-* Examples: |
---|
2602 | #D- |
---|
2603 | function IGCM_sys_ncwa { |
---|
2604 | IGCM_debug_PushStack "IGCM_sys_ncwa" -- $@ |
---|
2605 | if ( $DEBUG_sys ) ; then |
---|
2606 | echo "IGCM_sys_ncwa :" $@ |
---|
2607 | fi |
---|
2608 | |
---|
2609 | typeset NB_ESSAI DELAI status i |
---|
2610 | # number of tentative |
---|
2611 | NB_ESSAI=3 |
---|
2612 | # time delay between tentative |
---|
2613 | DELAI=2 |
---|
2614 | |
---|
2615 | i=0 |
---|
2616 | while [ $i -lt $NB_ESSAI ] ; do |
---|
2617 | ncwa $@ > /tmp/out_command.$$ 2>&1 |
---|
2618 | status=$? |
---|
2619 | if [ ${status} -gt 0 ] ; then |
---|
2620 | IGCM_debug_Print 2 "IGCM_sys_ncwa : error code ${status}" |
---|
2621 | cat /tmp/out_command.$$ |
---|
2622 | \rm /tmp/out_command.$$ |
---|
2623 | IGCM_debug_Print 2 "IGCM_sys_ncwa : ${i}/${NB_ESSAI} sleep ${DELAI} seconds and try again." |
---|
2624 | sleep $DELAI |
---|
2625 | else |
---|
2626 | \rm /tmp/out_command.$$ |
---|
2627 | break |
---|
2628 | fi |
---|
2629 | (( i = i + 1 )) |
---|
2630 | done |
---|
2631 | |
---|
2632 | if [ ${status} -gt 0 ] ; then |
---|
2633 | echo "IGCM_sys_ncwa : ncwa error" |
---|
2634 | IGCM_debug_Exit "ncwa" |
---|
2635 | fi |
---|
2636 | |
---|
2637 | IGCM_debug_PopStack "IGCM_sys_ncwa" |
---|
2638 | } |
---|
2639 | |
---|
2640 | ############################################################## |
---|
2641 | # CDO OPERATOR |
---|
2642 | |
---|
2643 | #D-#================================================== |
---|
2644 | #D-function IGCM_sys_cdo |
---|
2645 | #D-* Purpose: encapsulate cdo call so as to manage error code and retry |
---|
2646 | #D-* Examples: |
---|
2647 | #D- |
---|
2648 | function IGCM_sys_cdo { |
---|
2649 | IGCM_debug_PushStack "IGCM_sys_cdo" -- $@ |
---|
2650 | if ( $DEBUG_sys ) ; then |
---|
2651 | echo "IGCM_sys_cdo :" $@ |
---|
2652 | fi |
---|
2653 | |
---|
2654 | typeset status |
---|
2655 | |
---|
2656 | \cdo $@ > /tmp/out_command.$$ 2>&1 |
---|
2657 | status=$? |
---|
2658 | if [ ${status} -gt 0 ] ; then |
---|
2659 | echo "IGCM_sys_cdo : error code ${status}" |
---|
2660 | cat /tmp/out_command.$$ |
---|
2661 | \rm /tmp/out_command.$$ |
---|
2662 | IGCM_debug_PopStack "IGCM_sys_cdo" |
---|
2663 | return 1 |
---|
2664 | else |
---|
2665 | IGCM_debug_PopStack "IGCM_sys_cdo" |
---|
2666 | return 0 |
---|
2667 | fi |
---|
2668 | |
---|
2669 | IGCM_debug_PopStack "IGCM_sys_cdo" |
---|
2670 | } |
---|