[2] | 1 | #!/bin/ksh |
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| 2 | |
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| 3 | #************************************************************** |
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| 4 | # Author: Sébastien Denvil |
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[373] | 5 | # Contact: sebastien.denvil__at__ipsl.jussieu.fr |
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| 6 | # $Revision:: $ Revision of last commit |
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| 7 | # $Author:: $ Author of last commit |
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| 8 | # $Date:: $ Date of last commit |
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[2] | 9 | # IPSL (2006) |
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| 10 | # This software is governed by the CeCILL licence see libIGCM/libIGCM_CeCILL.LIC |
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| 11 | # |
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| 12 | #************************************************************** |
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| 13 | |
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| 14 | #========================================================= |
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| 15 | # The documentation of this file can be automatically generated |
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| 16 | # if you use the prefix #D- for comments to be extracted. |
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| 17 | # Extract with command: cat lib* | grep "^#D-" | cut -c "4-" |
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| 18 | #========================================================= |
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| 19 | |
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| 20 | #D-#================================================= |
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[192] | 21 | #D-LibIGCM_sys for Brodie SX8 |
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[2] | 22 | #D-#================================================= |
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| 23 | #D- |
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| 24 | #D- This ksh library if a layer under some usefull |
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| 25 | #D-environment variables and shell commands. |
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| 26 | #D-All those definitions depend on host particularities. |
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| 27 | #D-It manages a stack mechanism and test validity of operations. |
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| 28 | #D-All function described bellow must be prefixed by IGCM_sys. |
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| 29 | |
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| 30 | #==================================================== |
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| 31 | # libIGCM_sys PARAMETERS |
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| 32 | #==================================================== |
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| 33 | |
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| 34 | #==================================================== |
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| 35 | # set DEBUG_sys to true to output calls of function |
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| 36 | typeset -r DEBUG_sys=${DEBUG_sys:=true} |
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| 37 | |
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| 38 | #==================================================== |
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| 39 | # Turn in dry run mode ? (sys_Put_Rest, sys_Put_Out, sys_Get) |
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| 40 | typeset -r DRYRUN=${DRYRUN:=0} |
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| 41 | |
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| 42 | # YOU MUST COMPILE YOUR EXE FILES FOR DRYRUN MODE ! |
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| 43 | # ------------------------------------------------------------------------------------- |
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| 44 | # | DRYRUN= | Date computations, | sys_Get | Exe | sys_Put_Out; sys_Put_Rest | |
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| 45 | # | | Cp/Exe param files | | Chmod | | |
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| 46 | # | | Qsub | | | | |
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| 47 | # ------------------------------------------------------------------------------------- |
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| 48 | # | 0 | yes | yes | yes | yes | |
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| 49 | # ------------------------------------------------------------------------------------- |
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| 50 | # | 1 | yes | yes | yes | no | |
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| 51 | # ------------------------------------------------------------------------------------- |
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| 52 | # | 2 | yes | yes | no | no | |
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| 53 | # ------------------------------------------------------------------------------------- |
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| 54 | # | 3 | yes | no | no | no | |
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| 55 | # ------------------------------------------------------------------------------------- |
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| 56 | |
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| 57 | #===================================================== |
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| 58 | # Global Variables : |
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| 59 | #===================================================== |
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| 60 | # Language : "fr" or "en" |
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| 61 | typeset -r MYLANG="fr" |
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| 62 | |
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| 63 | #===================================================== |
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| 64 | # Host and user names |
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[217] | 65 | # $hostname ou hostname |
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[228] | 66 | typeset HOST=${HOST:=$( hostname )} |
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[2] | 67 | # $username ou whoami |
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[228] | 68 | typeset LOGIN=${LOGIN:=$( whoami )} |
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[71] | 69 | # $hostname of the MASTER job |
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[80] | 70 | typeset -r MASTER=brodie |
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[2] | 71 | |
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| 72 | #D- |
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| 73 | #D-#================================================== |
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| 74 | #D-Program used in libIGCM |
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| 75 | #D-#================================================== |
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| 76 | |
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| 77 | # rsync with path |
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| 78 | typeset -r RSYNC=/home/rech/ces/rces452/RSYNC_SX8/bin/rsync |
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| 79 | # RSYNC_opt args to rsync |
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[17] | 80 | typeset -r RSYNC_opt="-va" |
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[2] | 81 | # ie storage filesystem |
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[192] | 82 | typeset -r RHOST=gaya |
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[2] | 83 | typeset -r REMOTE_RSYNC=/u/rech/ces/rces452/RSYNC/bin/rsync |
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| 84 | |
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| 85 | #==================================================== |
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| 86 | # Host specific DIRECTORIES |
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| 87 | #==================================================== |
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| 88 | |
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| 89 | #==================================================== |
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| 90 | #- R_EXE (==> BIN_DIR = ${MODIPSL}/bin ) |
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| 91 | typeset -r R_EXE="${MODIPSL}/bin" |
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| 92 | |
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| 93 | #==================================================== |
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| 94 | #- SUBMIT_DIR : submission dir |
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[44] | 95 | typeset SUBMIT_DIR=${SUBMIT_DIR:=${PBS_O_WORKDIR}} |
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[2] | 96 | |
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| 97 | #==================================================== |
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| 98 | #- ARCHIVE |
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[109] | 99 | typeset -r ARCHIVE=$( rsh gaya -n env | grep PWD | gawk "-F=" '{print $2}' ) |
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[2] | 100 | |
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| 101 | #==================================================== |
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[55] | 102 | #- Mirror libIGCM from brodie to ulam |
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[2] | 103 | typeset -r MirrorlibIGCM=${MirrorlibIGCM:=true} |
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| 104 | |
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| 105 | #==================================================== |
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[71] | 106 | #- libIGCM_POST |
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[109] | 107 | PATHlibIGCM=$( echo ${libIGCM} | gawk -F"${LOGIN}/" '{print $2}' | sed -e "s&/libIGCM&&" ) |
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[192] | 108 | typeset -r libIGCM_POST=${HOME}/MIRROR/${PATHlibIGCM}/libIGCM |
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[71] | 109 | |
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| 110 | #==================================================== |
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[2] | 111 | #- IN |
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| 112 | typeset -r R_IN=${R_IN:=/u/rech/psl/rpsl035/IGCM} |
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[438] | 113 | typeset -r R_IN_ECMWF=${R_IN_ECMWF:=/u/rech/psl/rpsl376} |
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[2] | 114 | |
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| 115 | #==================================================== |
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| 116 | #- OUT |
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| 117 | typeset -r R_OUT=${ARCHIVE}/IGCM_OUT |
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| 118 | |
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| 119 | #==================================================== |
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| 120 | #- OUT_POST |
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[109] | 121 | typeset -r R_OUT_POST=$( rsh ulam -n echo $WORKDIR | gawk "-F=" "{print $2}" )/IGCM_OUT |
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[2] | 122 | |
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| 123 | #==================================================== |
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| 124 | #- RUN_DIR_PATH : Temporary working directory (=> TMP) |
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| 125 | typeset -r RUN_DIR_PATH=${RUN_DIR_PATH:=${TMPDIR}} |
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| 126 | |
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| 127 | #==================================================== |
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[156] | 128 | #- BIG_DIR : BIG_DIR to store files waiting for rebuild |
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[208] | 129 | typeset -r BIG_DIR=${BIG_DIR:=${WORKDIR}/REBUILD} |
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[156] | 130 | |
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| 131 | #==================================================== |
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[2] | 132 | #- HOST_MPIRUN_COMMAND |
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| 133 | typeset -r HOST_MPIRUN_COMMAND=${HOST_MPIRUN_COMMAND:="mpirun"} |
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| 134 | |
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[61] | 135 | #==================================================== |
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| 136 | #- Max number of arguments passed to nco operator or demigration command |
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| 137 | UNIX_MAX_LIMIT=360 |
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| 138 | |
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[2] | 139 | #D-#================================================== |
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| 140 | #D-function IGCM_sys_RshArchive |
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[37] | 141 | #D-* Purpose: Archive rsh command |
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[2] | 142 | #D-* Examples: |
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| 143 | #D- |
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| 144 | function IGCM_sys_RshArchive { |
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| 145 | IGCM_debug_PushStack "IGCM_sys_RshArchive" $@ |
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[37] | 146 | rsh gaya exec /bin/ksh <<-EOF |
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| 147 | ${@} |
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| 148 | EOF |
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[2] | 149 | if [ $? -gt 0 ] ; then |
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| 150 | echo "IGCM_sys_RshArchive : erreur." |
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| 151 | IGCM_debug_Exit "IGCM_sys_RshArchive" |
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| 152 | fi |
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| 153 | IGCM_debug_PopStack "IGCM_sys_RshArchive" |
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| 154 | } |
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| 155 | |
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| 156 | #D-#================================================== |
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| 157 | #D-function IGCM_sys_RshPost |
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[37] | 158 | #D-* Purpose: Post-process rsh command |
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[2] | 159 | #D-* Examples: |
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| 160 | #D- |
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| 161 | function IGCM_sys_RshPost { |
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| 162 | IGCM_debug_PushStack "IGCM_sys_RshPost" $@ |
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| 163 | if ( $DEBUG_sys ) ; then |
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| 164 | echo "IGCM_sys_RshPost :" $@ |
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| 165 | fi |
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[481] | 166 | |
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| 167 | # keep standard input to keep it for postpone if ulam don't answer |
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| 168 | cat >/tmp/tmp_IGCM_sys_RshPost_$$ |
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| 169 | |
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| 170 | ## Add submission for old postponed files only if command is a Qsub |
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| 171 | ## |
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| 172 | ISITQSUB=0 |
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| 173 | grep Qsub /tmp/tmp_IGCM_sys_RshPost_$$ >/dev/null 2>&1 && ISITQSUB=1 |
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| 174 | if ( [ ${ISITQSUB} -gt 0 ] ) ; then |
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| 175 | if [ -d ${SUBMIT_DIR}/POSTPONE ] ; then |
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| 176 | for postponed_file in ${SUBMIT_DIR}/POSTPONE/* ; do |
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| 177 | if [ -f ${postponed_file} ] ; then |
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| 178 | IGCM_debug_Print 2 " submit postponed file : " ${postponed_file} |
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| 179 | rsh ulam exec /bin/ksh <${postponed_file} |
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| 180 | if [ $? -eq 0 ] ; then |
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| 181 | IGCM_sys_Rm ${postponed_file} |
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| 182 | else |
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| 183 | IGCM_debug_Print 2 "keep postponed file for an other submission :" ${postponed_file} |
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| 184 | fi |
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| 185 | fi |
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| 186 | done |
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| 187 | fi |
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[2] | 188 | fi |
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[481] | 189 | |
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| 190 | RETURN=0 |
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| 191 | # rsh ulam command |
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| 192 | rsh ulam exec /bin/ksh </tmp/tmp_IGCM_sys_RshPost_$$ |
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| 193 | RETURN=$? |
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| 194 | |
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| 195 | # keep standard input for postpone if ulam don't answer |
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| 196 | if ( [ ${RETURN} -gt 0 ] ) ; then |
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| 197 | IGCM_debug_Print 2 "Postpone tmp_IGCM_sys_RshPost_$$" |
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| 198 | [ -d ${SUBMIT_DIR}/POSTPONE ] || mkdir ${SUBMIT_DIR}/POSTPONE |
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| 199 | mv /tmp/tmp_IGCM_sys_RshPost_$$ ${SUBMIT_DIR}/POSTPONE |
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| 200 | fi |
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[2] | 201 | IGCM_debug_PopStack "IGCM_sys_RshPost" |
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[481] | 202 | |
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[2] | 203 | } |
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| 204 | |
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| 205 | #D-#================================================== |
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[153] | 206 | #D-function IGCM_sys_SendMail |
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| 207 | #D-* Purpose: Send mail when simulation is over |
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| 208 | #D-* Examples: |
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| 209 | #D- |
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| 210 | function IGCM_sys_SendMail { |
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[409] | 211 | IGCM_debug_PushStack "IGCM_sys_SendMail" $@ |
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[153] | 212 | if ( $DEBUG_sys ) ; then |
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| 213 | echo "IGCM_sys_SendMail :" $@ |
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| 214 | fi |
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| 215 | |
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[437] | 216 | if ( ${ExitFlag} ) ; then |
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[452] | 217 | status=failed |
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| 218 | else |
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| 219 | status=completed |
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| 220 | fi |
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| 221 | cat << END_MAIL > job_end.mail |
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[437] | 222 | Dear ${LOGIN}, |
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| 223 | |
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[452] | 224 | Simulation ${config_UserChoices_JobName} is ${status} on supercomputer `hostname`. |
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[153] | 225 | Job started : ${DateBegin} |
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| 226 | Job ended : ${DateEnd} |
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[434] | 227 | Output files are available in ${R_SAVE} |
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[452] | 228 | Script files, Script Outputs and Debug files (if necessary) are available in ${SUBMIT_DIR} |
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[153] | 229 | END_MAIL |
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| 230 | |
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[211] | 231 | if [ X${config_UserChoices_MailName} != X ] ; then |
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[437] | 232 | mailx -s "${config_UserChoices_JobName} ${status}" ${config_UserChoices_MailName} < job_end.mail |
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[153] | 233 | elif [ -f ~/.forward ] ; then |
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[437] | 234 | mailx -s "${config_UserChoices_JobName} ${status}" $( cat ~/.forward ) < job_end.mail |
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[211] | 235 | else |
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[437] | 236 | mailx -s "${config_UserChoices_JobName} ${status}" ${USER} < job_end.mail |
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[153] | 237 | fi |
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| 238 | |
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| 239 | if [ $? -gt 0 ] ; then |
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| 240 | echo "IGCM_sys_SendMail : erreur." |
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| 241 | IGCM_debug_Exit "IGCM_sys_SendMail" |
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| 242 | fi |
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| 243 | IGCM_debug_PopStack "IGCM_sys_SendMail" |
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| 244 | } |
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| 245 | |
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| 246 | #D-#================================================== |
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[2] | 247 | #D-function IGCM_sys_Mkdir |
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| 248 | #D-* Purpose: Master locale mkdir command |
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| 249 | #D-* Examples: |
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| 250 | #D- |
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| 251 | function IGCM_sys_Mkdir { |
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| 252 | IGCM_debug_PushStack "IGCM_sys_Mkdir" $@ |
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| 253 | if ( $DEBUG_sys ) ; then |
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| 254 | echo "IGCM_sys_Mkdir :" $@ |
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| 255 | fi |
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| 256 | if [ ! -d ${1} ]; then |
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| 257 | \mkdir -p $1 |
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| 258 | if [ $? -gt 0 ] ; then |
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| 259 | echo "IGCM_sys_Mkdir : erreur." |
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| 260 | IGCM_debug_Exit "IGCM_sys_Mkdir" |
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| 261 | fi |
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| 262 | fi |
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| 263 | # vérification : |
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| 264 | if [ ! -d ${1} ] ; then |
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| 265 | echo "IGCM_sys_Mkdir : erreur." |
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| 266 | IGCM_debug_Exit "IGCM_sys_Mkdir" |
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| 267 | fi |
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| 268 | IGCM_debug_PopStack "IGCM_sys_Mkdir" |
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| 269 | } |
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| 270 | |
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| 271 | #D-#================================================== |
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| 272 | #D-function IGCM_sys_MkdirArchive |
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| 273 | #D-* Purpose: Mkdir on Archive |
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| 274 | #D-* Examples: |
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| 275 | #D- |
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| 276 | function IGCM_sys_MkdirArchive { |
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| 277 | IGCM_debug_PushStack "IGCM_sys_MkdirArchive" $@ |
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| 278 | if ( $DEBUG_sys ) ; then |
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| 279 | echo "IGCM_sys_MkdirArchive :" $@ |
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| 280 | fi |
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| 281 | #- creation de repertoire sur le serveur fichier |
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| 282 | rsh gaya -n mkdir -p $1 |
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| 283 | |
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| 284 | if [ $? -gt 0 ] ; then |
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| 285 | echo "IGCM_sys_MkdirArchive : erreur." |
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| 286 | IGCM_debug_Exit "IGCM_sys_MkdirArchive" |
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| 287 | fi |
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| 288 | IGCM_debug_PopStack "IGCM_sys_MkdirArchive" |
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| 289 | } |
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| 290 | |
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| 291 | #D-#================================================== |
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| 292 | #D-function IGCM_sys_MkdirWork |
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| 293 | #D-* Purpose: Mkdir on Work |
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| 294 | #D-* Examples: |
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| 295 | #D- |
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| 296 | function IGCM_sys_MkdirWork { |
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| 297 | IGCM_debug_PushStack "IGCM_sys_MkdirWork" $@ |
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| 298 | if ( $DEBUG_sys ) ; then |
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| 299 | echo "IGCM_sys_MkdirWork :" $@ |
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| 300 | fi |
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| 301 | #- creation de repertoire sur le serveur fichier |
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| 302 | if [ ! -d ${1} ]; then |
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| 303 | \mkdir -p $1 |
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| 304 | if [ $? -gt 0 ] ; then |
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| 305 | echo "IGCM_sys_MkdirWork : erreur." |
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| 306 | IGCM_debug_Exit "IGCM_sys_MkdirWork" |
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| 307 | fi |
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| 308 | fi |
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| 309 | IGCM_debug_PopStack "IGCM_sys_MkdirWork" |
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| 310 | } |
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| 311 | |
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| 312 | #D-#================================================== |
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| 313 | #D-function IGCM_sys_Cd |
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| 314 | #D-* Purpose: master cd command |
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| 315 | #D-* Examples: |
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| 316 | #D- |
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| 317 | function IGCM_sys_Cd { |
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| 318 | IGCM_debug_PushStack "IGCM_sys_Cd" $@ |
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| 319 | if ( $DEBUG_sys ) ; then |
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| 320 | echo "IGCM_sys_Cd :" $@ |
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| 321 | fi |
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| 322 | \cd $1 |
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| 323 | if [ $? -gt 0 ] ; then |
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| 324 | echo "IGCM_sys_Cd : erreur." |
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| 325 | IGCM_debug_Exit "IGCM_sys_Cd" |
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| 326 | fi |
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| 327 | IGCM_debug_PopStack "IGCM_sys_Cd" |
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| 328 | } |
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| 329 | |
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| 330 | #D-#================================================== |
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| 331 | #D-function IGCM_sys_Chmod |
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| 332 | #D-* Purpose: Chmod |
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| 333 | #D-* Examples: |
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| 334 | #D- |
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| 335 | function IGCM_sys_Chmod { |
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| 336 | IGCM_debug_PushStack "IGCM_sys_Chmod" -- $@ |
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| 337 | if ( $DEBUG_sys ) ; then |
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| 338 | echo "IGCM_sys_Chmod :" $@ |
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| 339 | fi |
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| 340 | if [ $DRYRUN -le 1 ]; then |
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| 341 | \chmod $@ |
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| 342 | if [ $? -gt 0 ] ; then |
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| 343 | echo "IGCM_sys_Chmod : erreur." |
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| 344 | IGCM_debug_Exit "IGCM_sys_Chmod" |
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| 345 | fi |
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| 346 | else |
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[36] | 347 | ( ${DEBUG_debug} ) && echo "DRYRUN mode = " $DRYRUN >> stack |
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[2] | 348 | fi |
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| 349 | IGCM_debug_PopStack "IGCM_sys_Chmod" |
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| 350 | } |
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| 351 | |
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| 352 | #D-#================================================== |
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| 353 | #D-function IGCM_sys_FileSize |
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| 354 | #D-* Purpose: Filesize |
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| 355 | #D-* Examples: |
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| 356 | #D- |
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| 357 | function IGCM_sys_FileSize { |
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| 358 | IGCM_debug_PushStack "IGCM_sys_FileSize" $@ |
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| 359 | |
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| 360 | typeset sizeF |
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| 361 | set +A sizeF -- $( ls -la ${1} ) |
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| 362 | if [ $? -gt 0 ] ; then |
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| 363 | IGCM_debug_Exit "IGCM_sys_FileSize" |
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| 364 | fi |
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| 365 | eval ${2}=${sizeF[4]} |
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| 366 | |
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| 367 | IGCM_debug_PopStack "IGCM_sys_FileSize" |
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| 368 | } |
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| 369 | |
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| 370 | #D-#================================================== |
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| 371 | #D-function IGCM_sys_TestDir |
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| 372 | #D-* Purpose: Test Directory that must exists |
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| 373 | #D-* Examples: |
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| 374 | #D- |
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| 375 | function IGCM_sys_TestDir { |
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| 376 | IGCM_debug_PushStack "IGCM_sys_TestDir" $@ |
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| 377 | if ( $DEBUG_sys ) ; then |
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| 378 | echo "IGCM_sys_TestDir :" $@ |
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| 379 | fi |
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[67] | 380 | typeset ExistFlag |
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| 381 | ExistFlag=$( [ -d $1 ] && echo 0 || echo 1 ) |
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[2] | 382 | IGCM_debug_PopStack "IGCM_sys_TestDir" |
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[67] | 383 | |
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| 384 | return ${ExistFlag} |
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[2] | 385 | } |
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| 386 | |
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| 387 | #D-#================================================== |
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| 388 | #D-function IGCM_sys_TestDirArchive |
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| 389 | #D-* Purpose: Test Directory that must exists on Archive |
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| 390 | #D-* Examples: |
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| 391 | #D- |
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| 392 | function IGCM_sys_TestDirArchive { |
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| 393 | IGCM_debug_PushStack "IGCM_sys_TestDirArchive" $@ |
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| 394 | if ( $DEBUG_sys ) ; then |
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| 395 | echo "IGCM_sys_TestDirArchive :" $@ |
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| 396 | fi |
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[67] | 397 | typeset ExistFlag |
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| 398 | ExistFlag=$( IGCM_sys_RshArchive "[ -d $1 ] && echo 0 || echo 1" ) |
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[2] | 399 | IGCM_debug_PopStack "IGCM_sys_TestDirArchive" |
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[67] | 400 | |
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| 401 | return ${ExistFlag} |
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[2] | 402 | } |
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| 403 | |
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| 404 | #D-#================================================== |
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| 405 | #D-function IGCM_sys_TestFileArchive |
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| 406 | #D-* Purpose: Test file that must NOT EXISTS on Archive |
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| 407 | #D-* Examples: |
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| 408 | #D- |
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| 409 | function IGCM_sys_TestFileArchive { |
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| 410 | IGCM_debug_PushStack "IGCM_sys_TestFileArchive" $@ |
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| 411 | if ( $DEBUG_sys ) ; then |
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| 412 | echo "IGCM_sys_TestFileArchive :" $@ |
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| 413 | fi |
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[67] | 414 | typeset ExistFlag |
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| 415 | ExistFlag=$( IGCM_sys_RshArchive "[ -f $1 ] && echo 0 || echo 1" ) |
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| 416 | IGCM_debug_PopStack "IGCM_sys_TestFileArchive" |
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[2] | 417 | |
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[67] | 418 | return ${ExistFlag} |
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| 419 | } |
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| 420 | |
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| 421 | #D-#================================================== |
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| 422 | #D-function IGCM_sys_CountFileArchive |
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| 423 | #D-* Purpose: Count files on Archive filesystem |
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| 424 | #D-* Examples: |
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| 425 | #D- |
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| 426 | function IGCM_sys_CountFileArchive { |
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| 427 | IGCM_debug_PushStack "IGCM_sys_CountFileArchive" $@ |
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| 428 | IGCM_sys_RshArchive "ls ${@} 2>/dev/null | wc -l" |
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| 429 | if [ $? -gt 0 ] ; then |
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| 430 | echo "IGCM_sys_CountFileArchive : erreur." |
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[2] | 431 | fi |
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[67] | 432 | IGCM_debug_PopStack "IGCM_sys_CountFileArchive" |
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[2] | 433 | } |
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| 434 | |
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| 435 | #D-#================================================== |
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| 436 | #D-function IGCM_sys_Tree |
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| 437 | #D-* Purpose: Tree directories with files on ${ARCHIVE} |
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| 438 | #D-* Examples: IGCM_sys_Tree ${R_IN} ${R_OUT} |
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| 439 | #D- |
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| 440 | function IGCM_sys_Tree { |
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| 441 | IGCM_debug_PushStack "IGCM_sys_Tree" $@ |
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| 442 | if ( $DEBUG_sys ) ; then |
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| 443 | echo "IGCM_sys_Tree :" $@ |
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| 444 | fi |
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| 445 | |
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| 446 | \mfls -r $@ |
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| 447 | |
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| 448 | IGCM_debug_PopStack "IGCM_sys_Tree" |
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| 449 | } |
---|
| 450 | |
---|
| 451 | #D-#================================================== |
---|
| 452 | #D-function IGCM_sys_Tar |
---|
| 453 | #D-* Purpose: master un-tar command |
---|
| 454 | #D-* Examples: |
---|
| 455 | #D- |
---|
| 456 | function IGCM_sys_Tar { |
---|
| 457 | IGCM_debug_PushStack "IGCM_sys_Tar" $@ |
---|
| 458 | if ( $DEBUG_sys ) ; then |
---|
| 459 | echo "IGCM_sys_Tar :" $@ |
---|
| 460 | fi |
---|
| 461 | \tar xvf $1 |
---|
| 462 | if [ $? -gt 0 ] ; then |
---|
| 463 | echo "IGCM_sys_Tar : erreur." |
---|
| 464 | IGCM_debug_Exit "IGCM_sys_Tar" |
---|
| 465 | fi |
---|
| 466 | IGCM_debug_PopStack "IGCM_sys_Tar" |
---|
| 467 | } |
---|
| 468 | |
---|
| 469 | #D-#================================================== |
---|
| 470 | #D-function IGCM_sys_UnTar |
---|
| 471 | #D-* Purpose: master un-tar command |
---|
| 472 | #D-* Examples: |
---|
| 473 | #D- |
---|
| 474 | function IGCM_sys_UnTar { |
---|
| 475 | IGCM_debug_PushStack "IGCM_sys_UnTar" $@ |
---|
| 476 | if ( $DEBUG_sys ) ; then |
---|
| 477 | echo "IGCM_sys_UnTar :" $@ |
---|
| 478 | fi |
---|
| 479 | \tar xvf $1 |
---|
| 480 | if [ $? -gt 0 ] ; then |
---|
| 481 | echo "IGCM_sys_UnTar : erreur." |
---|
| 482 | IGCM_debug_Exit "IGCM_sys_UnTar" |
---|
| 483 | fi |
---|
| 484 | IGCM_debug_PopStack "IGCM_sys_UnTar" |
---|
| 485 | } |
---|
| 486 | |
---|
| 487 | #D-#================================================== |
---|
| 488 | #D-function IGCM_sys_Qsub |
---|
| 489 | #D-* Purpose: Qsub new job |
---|
| 490 | #D-* Examples: |
---|
| 491 | #D- |
---|
| 492 | function IGCM_sys_Qsub { |
---|
| 493 | IGCM_debug_PushStack "IGCM_sys_Qsub" $@ |
---|
| 494 | if ( $DEBUG_sys ) ; then |
---|
| 495 | echo "IGCM_sys_Qsub :" $@ |
---|
| 496 | fi |
---|
| 497 | /usr/bin/nqsII/qsub -o ${Script_Output} -N ${config_UserChoices_JobName}.${CumulPeriod} < $1 |
---|
| 498 | if [ $? -gt 0 ] ; then |
---|
| 499 | echo "IGCM_sys_Qsub : erreur -o ${Script_Output} -N ${config_UserChoices_JobName}.${CumulPeriod} $@." |
---|
| 500 | IGCM_debug_Exit "IGCM_sys_Qsub" |
---|
| 501 | fi |
---|
| 502 | IGCM_debug_PopStack "IGCM_sys_Qsub" |
---|
| 503 | } |
---|
| 504 | |
---|
| 505 | #D-#================================================== |
---|
| 506 | #D-function IGCM_sys_QsubPost |
---|
| 507 | #D-* Purpose: Qsub new job on scalaire |
---|
| 508 | #D-* Examples: |
---|
| 509 | #D- |
---|
| 510 | function IGCM_sys_QsubPost { |
---|
| 511 | IGCM_debug_PushStack "IGCM_sys_QsubPost" $@ |
---|
| 512 | if ( $DEBUG_sys ) ; then |
---|
| 513 | echo "IGCM_sys_QsubPost :" $@ |
---|
| 514 | fi |
---|
[61] | 515 | cd ${POST_DIR} |
---|
[59] | 516 | /opt/ibmll/LoadL/full/bin/llsubmit ${libIGCM_POST}/$1.job |
---|
[61] | 517 | cd - |
---|
[2] | 518 | if [ $? -gt 0 ] ; then |
---|
| 519 | echo "IGCM_sys_QsubPost : erreur " $@ |
---|
| 520 | IGCM_debug_Exit "IGCM_sys_QsubPost" |
---|
| 521 | fi |
---|
| 522 | IGCM_debug_PopStack "IGCM_sys_QsubPost" |
---|
| 523 | } |
---|
| 524 | |
---|
| 525 | #D-************************* |
---|
| 526 | #D- File transfer functions |
---|
| 527 | #D-************************* |
---|
| 528 | #D- |
---|
| 529 | |
---|
| 530 | #D-#================================================== |
---|
| 531 | #D-function IGCM_sys_Rsync_out |
---|
| 532 | #D-* Purpose: treat return val of rsync |
---|
| 533 | #D-* Examples: IGCM_sys_Rsync_out out_RET_rsync |
---|
| 534 | #D- Error values and explanations can depend on your system version. |
---|
| 535 | function IGCM_sys_Rsync_out { |
---|
| 536 | RET=$1 |
---|
| 537 | if [ ! $RET ] ; then |
---|
| 538 | echo "rsync error !" |
---|
| 539 | fi |
---|
| 540 | |
---|
| 541 | if [ $MYLANG = "fr" ]; then |
---|
| 542 | case $RET in |
---|
| 543 | 0) return ;; |
---|
| 544 | 1) echo "Erreur de rsync ; RERR_SYNTAX : " |
---|
| 545 | echo "Erreur de syntaxe ou d'utilisation." |
---|
| 546 | return;; |
---|
| 547 | 2) echo "Erreur de rsync ; RERR_PROTOCOL : " |
---|
| 548 | echo "Incompatibilité de protocole." |
---|
| 549 | return;; |
---|
| 550 | 3) echo "Erreur de rsync ; RERR_FILESELECT 3" |
---|
| 551 | echo "Erreurs lors de la sélection des fichiers d'entrée sortie et" |
---|
| 552 | echo "répertoires" |
---|
| 553 | return;; |
---|
| 554 | 4) echo "Erreur de rsync ; RERR_UNSUPPORTED" |
---|
| 555 | echo "Action demandée non supportée : une tentative de manipulation de" |
---|
| 556 | echo "fichiers 64-bits sur une plate-forme qui ne les supporte pas a" |
---|
| 557 | echo "été faite ; ou une option qui est supportée par le client mais" |
---|
| 558 | echo "pas par le serveur a été spécifiée." |
---|
| 559 | return;; |
---|
| 560 | 10) echo "Erreur de rsync ; RERR_SOCKETIO" |
---|
| 561 | echo "Erreur dans le socket d'entrée sortie" |
---|
| 562 | return;; |
---|
| 563 | 11) echo "Erreur de rsync ; RERR_FILEIO" |
---|
| 564 | echo "Erreur d'entrée sortie fichier" |
---|
| 565 | return;; |
---|
| 566 | 12) echo "Erreur de rsync ; RERR_STREAMIO" |
---|
| 567 | echo "Erreur dans flux de donnée du protocole rsync" |
---|
| 568 | return;; |
---|
| 569 | 13) echo "Erreur de rsync ; RERR_MESSAGEIO" |
---|
| 570 | echo "Erreur avec les diagnostics du programme" |
---|
| 571 | return;; |
---|
| 572 | 14) echo "Erreur de rsync ; RERR_IPC" |
---|
| 573 | echo "Erreur dans le code IPC" |
---|
| 574 | return;; |
---|
| 575 | 20) echo "Erreur de rsync ; RERR_SIGNAL" |
---|
| 576 | echo "SIGUSR1 ou SIGINT reçu" |
---|
| 577 | return;; |
---|
| 578 | 21) echo "Erreur de rsync ; RERR_WAITCHILD" |
---|
| 579 | echo "Une erreur retournée par waitpid()" |
---|
| 580 | return;; |
---|
| 581 | 22) echo "Erreur de rsync ; RERR_MALLOC" |
---|
| 582 | echo "Erreur lors de l'allocation des tampons de mémoire de coeur" |
---|
| 583 | return;; |
---|
| 584 | 23) echo "" |
---|
| 585 | echo "Erreur fichier inexistant" |
---|
| 586 | return;; |
---|
| 587 | 30) echo "Erreur de rsync ; RERR_TIMEOUT" |
---|
| 588 | echo "Temps d'attente écoulé dans l'envoi/réception de données" |
---|
| 589 | return;; |
---|
| 590 | *) echo "Erreur de rsync : code de retour de rsync inconnu :" $RET |
---|
| 591 | return;; |
---|
| 592 | esac |
---|
| 593 | elif [ $MYLANG = "en" ] ; then |
---|
| 594 | case $RET in |
---|
| 595 | 0) return;; |
---|
| 596 | 1) echo "rsync error : Syntax or usage error " |
---|
| 597 | return;; |
---|
| 598 | 2) echo "rsync error : Protocol incompatibility " |
---|
| 599 | return;; |
---|
| 600 | 3) echo "rsync error : Errors selecting input/output files, dirs" |
---|
| 601 | return;; |
---|
| 602 | 4) echo "rsync error : Requested action not supported: an attempt" |
---|
| 603 | echo "was made to manipulate 64-bit files on a platform that cannot support" |
---|
| 604 | echo "them; or an option was specified that is supported by the client and" |
---|
| 605 | echo "not by the server." |
---|
| 606 | return;; |
---|
| 607 | 5) echo "rsync error : Error starting client-server protocol" |
---|
| 608 | return;; |
---|
| 609 | 10) echo "rsync error : Error in socket I/O " |
---|
| 610 | return;; |
---|
| 611 | 11) echo "rsync error : Error in file I/O " |
---|
| 612 | return;; |
---|
| 613 | 12) echo "rsync error : Error in rsync protocol data stream " |
---|
| 614 | return;; |
---|
| 615 | 13) echo "rsync error : Errors with program diagnostics " |
---|
| 616 | return;; |
---|
| 617 | 14) echo "rsync error : Error in IPC code " |
---|
| 618 | return;; |
---|
| 619 | 20) echo "rsync error : Received SIGUSR1 or SIGINT " |
---|
| 620 | return;; |
---|
| 621 | 21) echo "rsync error : Some error returned by waitpid() " |
---|
| 622 | return;; |
---|
| 623 | 22) echo "rsync error : Error allocating core memory buffers " |
---|
| 624 | return;; |
---|
| 625 | 23) echo "rsync error : Partial transfer due to error" |
---|
| 626 | return;; |
---|
| 627 | 24) echo "rsync error : Partial transfer due to vanished source files" |
---|
| 628 | return;; |
---|
| 629 | 30) echo "rsync error : Timeout in data send/receive " |
---|
| 630 | return;; |
---|
| 631 | *) echo "rsync error : return code of rsync unknown :" $RET |
---|
| 632 | return;; |
---|
| 633 | esac |
---|
| 634 | else |
---|
| 635 | echo "unknown language $MYLANG." |
---|
| 636 | return |
---|
| 637 | fi |
---|
| 638 | } |
---|
| 639 | |
---|
| 640 | |
---|
| 641 | #D-#================================================== |
---|
| 642 | #D-function IGCM_sys_Miror_libIGCM |
---|
[55] | 643 | #D-* Purpose: Mirror libIGCM PATH and lib to ulam |
---|
[2] | 644 | #D-* Examples: |
---|
| 645 | #D- |
---|
| 646 | function IGCM_sys_Mirror_libIGCM { |
---|
| 647 | IGCM_debug_PushStack "IGCM_sys_Mirror_libIGCM" |
---|
| 648 | if ( $DEBUG_sys ) ; then |
---|
| 649 | echo "IGCM_sys_Mirror_libIGCM" |
---|
| 650 | fi |
---|
| 651 | |
---|
| 652 | typeset RET DEST |
---|
| 653 | |
---|
| 654 | IGCM_sys_RshPost <<-EOF |
---|
[193] | 655 | mkdir -p ${HOME}/MIRROR/${PATHlibIGCM} |
---|
[2] | 656 | EOF |
---|
[55] | 657 | rsh ulam -n hostname > /dev/null 2>&1 |
---|
[2] | 658 | RET=$? |
---|
| 659 | if [ $RET -eq 0 ] ; then |
---|
[192] | 660 | echo ${RSYNC} ${RSYNC_opt} -e "rsh " ${libIGCM} ulam:${HOME}/MIRROR/${PATHlibIGCM} > out_rsync 2>&1 |
---|
| 661 | ${RSYNC} ${RSYNC_opt} -e "rsh " ${libIGCM} ulam:${HOME}/MIRROR/${PATHlibIGCM} >> out_rsync 2>&1 |
---|
[2] | 662 | RET=$? |
---|
| 663 | |
---|
| 664 | if [ ${RET} -gt 0 ] ; then |
---|
[55] | 665 | echo "IGCM_sys_Mirror_libIGCM Warning : no libIGCM on ulam." |
---|
[2] | 666 | cat out_rsync |
---|
| 667 | fi |
---|
| 668 | else |
---|
[55] | 669 | echo "No POST-TREATMENT avaible because ulam is down." |
---|
[2] | 670 | fi |
---|
| 671 | IGCM_debug_PopStack "IGCM_sys_Mirror_libIGCM" |
---|
| 672 | } |
---|
| 673 | |
---|
| 674 | #==================================================== |
---|
| 675 | #- Call IGCM_sys_Mirror_libIGCM now ! |
---|
| 676 | if ( $MirrorlibIGCM ) ; then |
---|
| 677 | IGCM_sys_Mirror_libIGCM |
---|
| 678 | fi |
---|
| 679 | |
---|
| 680 | #D-#================================================== |
---|
| 681 | #D-function IGCM_sys_Cp |
---|
| 682 | #D-* Purpose: generic cp |
---|
| 683 | #D-* Examples: |
---|
| 684 | #D- |
---|
| 685 | function IGCM_sys_Cp { |
---|
| 686 | IGCM_debug_PushStack "IGCM_sys_Cp" $@ |
---|
| 687 | if ( $DEBUG_sys ) ; then |
---|
| 688 | echo "IGCM_sys_Cp :" $@ |
---|
| 689 | fi |
---|
| 690 | |
---|
| 691 | typeset RET |
---|
| 692 | |
---|
| 693 | echo cp $@ > out_rsync 2>&1 |
---|
| 694 | \cp $@ >> out_rsync 2>&1 |
---|
| 695 | RET=$? |
---|
| 696 | |
---|
| 697 | if [ ${RET} -gt 0 ] ; then |
---|
| 698 | echo "IGCM_sys_Cp : error." |
---|
| 699 | cat out_rsync |
---|
| 700 | IGCM_debug_Exit "IGCM_sys_Cp" |
---|
| 701 | fi |
---|
| 702 | IGCM_debug_PopStack "IGCM_sys_Cp" |
---|
| 703 | } |
---|
| 704 | |
---|
| 705 | #D-#================================================== |
---|
[92] | 706 | #D-function IGCM_sys_Rm |
---|
| 707 | #D-* Purpose: generic rm |
---|
| 708 | #D-* Examples: |
---|
| 709 | #D- |
---|
| 710 | function IGCM_sys_Rm { |
---|
| 711 | IGCM_debug_PushStack "IGCM_sys_Rm" -- $@ |
---|
| 712 | if ( $DEBUG_sys ) ; then |
---|
| 713 | echo "IGCM_sys_Rm :" $@ |
---|
| 714 | fi |
---|
| 715 | |
---|
| 716 | typeset RET |
---|
| 717 | |
---|
| 718 | echo rm $@ > out_rsync 2>&1 |
---|
| 719 | \rm $@ >> out_rsync 2>&1 |
---|
| 720 | RET=$? |
---|
| 721 | |
---|
| 722 | if [ ${RET} -gt 0 ] ; then |
---|
| 723 | echo "IGCM_sys_Rm : error." |
---|
| 724 | cat out_rsync |
---|
| 725 | IGCM_debug_Exit "IGCM_sys_Rm" |
---|
| 726 | fi |
---|
| 727 | IGCM_debug_PopStack "IGCM_sys_Rm" |
---|
| 728 | } |
---|
| 729 | |
---|
| 730 | #D-#================================================== |
---|
[2] | 731 | #D-function IGCM_sys_Mv |
---|
| 732 | #D-* Purpose: generic move |
---|
| 733 | #D-* Examples: |
---|
| 734 | #D- |
---|
| 735 | function IGCM_sys_Mv { |
---|
| 736 | IGCM_debug_PushStack "IGCM_sys_Mv" $@ |
---|
| 737 | if ( $DEBUG_sys ) ; then |
---|
| 738 | echo "IGCM_sys_Mv :" $@ |
---|
| 739 | fi |
---|
| 740 | |
---|
[173] | 741 | if [ $DRYRUN = 0 ]; then |
---|
[2] | 742 | |
---|
[173] | 743 | typeset RET |
---|
| 744 | |
---|
| 745 | echo mv $@ > out_rsync 2>&1 |
---|
| 746 | \mv $@ >> out_rsync 2>&1 |
---|
| 747 | RET=$? |
---|
| 748 | |
---|
| 749 | if [ ${RET} -gt 0 ] ; then |
---|
| 750 | echo "IGCM_sys_Mv : error in mv." |
---|
| 751 | cat out_rsync |
---|
| 752 | IGCM_debug_Exit "IGCM_sys_Mv" |
---|
| 753 | fi |
---|
| 754 | else |
---|
| 755 | ( ${DEBUG_debug} ) && echo "DRYRUN mode = " $DRYRUN >> stack |
---|
[2] | 756 | fi |
---|
| 757 | |
---|
| 758 | IGCM_debug_PopStack "IGCM_sys_Mv" |
---|
| 759 | } |
---|
| 760 | |
---|
| 761 | #D-#================================================== |
---|
[34] | 762 | #D-function IGCM_sys_Put_Dir |
---|
| 763 | #D-* Purpose: Copy a complete directory on $(ARCHIVE) |
---|
| 764 | #D-* Examples: |
---|
| 765 | #D- |
---|
| 766 | function IGCM_sys_Put_Dir { |
---|
| 767 | IGCM_debug_PushStack "IGCM_sys_Put_Dir" $@ |
---|
| 768 | if ( $DEBUG_sys ) ; then |
---|
| 769 | echo "IGCM_sys_Put_Dir :" $@ |
---|
| 770 | fi |
---|
| 771 | if [ $DRYRUN = 0 ]; then |
---|
| 772 | if [ ! -d ${1} ] ; then |
---|
| 773 | echo "WARNING : IGCM_sys_Put_Dir ${1} DOES NOT EXIST ." |
---|
| 774 | IGCM_debug_PopStack "IGCM_sys_Put_Dir" |
---|
| 775 | return |
---|
| 776 | fi |
---|
| 777 | |
---|
| 778 | typeset RET |
---|
| 779 | |
---|
| 780 | # Only if we use rsync |
---|
| 781 | #IGCM_sys_TestDirArchive $( dirname $2 ) |
---|
| 782 | # |
---|
| 783 | #USUAL WAY |
---|
| 784 | rcp -r $1 gaya:$2 > out_rsync 2>&1 |
---|
| 785 | RET=$? |
---|
| 786 | |
---|
| 787 | if [ ${RET} -gt 0 ] ; then |
---|
| 788 | echo "IGCM_sys_Put_Dir : error." |
---|
| 789 | cat out_rsync |
---|
| 790 | IGCM_debug_Exit "IGCM_sys_Put_Dir" |
---|
| 791 | fi |
---|
| 792 | else |
---|
[36] | 793 | ( ${DEBUG_debug} ) && echo "DRYRUN mode = " $DRYRUN >> stack |
---|
[34] | 794 | fi |
---|
| 795 | IGCM_debug_PopStack "IGCM_sys_Put_Dir" |
---|
| 796 | } |
---|
| 797 | |
---|
| 798 | #D-#================================================== |
---|
| 799 | #D-function IGCM_sys_Get_Dir |
---|
| 800 | #D-* Purpose: Copy a complete directory from $(ARCHIVE) |
---|
| 801 | #D-* Examples: |
---|
| 802 | #D- |
---|
| 803 | function IGCM_sys_Get_Dir { |
---|
| 804 | IGCM_debug_PushStack "IGCM_sys_Get_Dir" $@ |
---|
| 805 | if ( $DEBUG_sys ) ; then |
---|
| 806 | echo "IGCM_sys_Get_Dir :" $@ |
---|
| 807 | fi |
---|
| 808 | if [ $DRYRUN = 0 ]; then |
---|
| 809 | if [ ! -d ${1} ] ; then |
---|
| 810 | echo "WARNING : IGCM_sys_Get_Dir ${1} DOES NOT EXIST ." |
---|
| 811 | IGCM_debug_PopStack "IGCM_sys_Get_Dir" |
---|
| 812 | return |
---|
| 813 | fi |
---|
| 814 | |
---|
| 815 | typeset RET |
---|
| 816 | |
---|
| 817 | #USUAL WAY |
---|
| 818 | rcp -rp gaya:$1 $2 > out_rsync 2>&1 |
---|
| 819 | RET=$? |
---|
| 820 | |
---|
| 821 | if [ ${RET} -gt 0 ] ; then |
---|
| 822 | echo "IGCM_sys_Get_Dir : error." |
---|
| 823 | cat out_rsync |
---|
| 824 | IGCM_debug_Exit "IGCM_sys_Get_Dir" |
---|
| 825 | fi |
---|
| 826 | else |
---|
[36] | 827 | ( ${DEBUG_debug} ) && echo "DRYRUN mode = " $DRYRUN >> stack |
---|
[34] | 828 | fi |
---|
| 829 | IGCM_debug_PopStack "IGCM_sys_Get_Dir" |
---|
| 830 | } |
---|
| 831 | |
---|
| 832 | #D-#================================================== |
---|
[2] | 833 | #D-function IGCM_sys_Put_Rest |
---|
| 834 | #D-* Purpose: Put computied restarts on $(ARCHIVE). |
---|
| 835 | #D- File and target directory must exist. |
---|
| 836 | #D-* Examples: |
---|
| 837 | #D- |
---|
| 838 | function IGCM_sys_Put_Rest { |
---|
| 839 | IGCM_debug_PushStack "IGCM_sys_Put_Rest" $@ |
---|
| 840 | if ( $DEBUG_sys ) ; then |
---|
| 841 | echo "IGCM_sys_Put_Rest :" $@ |
---|
| 842 | fi |
---|
| 843 | if [ $DRYRUN = 0 ]; then |
---|
| 844 | if [ ! -f ${1} ] ; then |
---|
| 845 | echo "ERROR : IGCM_sys_Put_Rest ${1} DOES NOT EXIST ." |
---|
| 846 | IGCM_debug_Exit "IGCM_sys_Put_Rest" |
---|
| 847 | fi |
---|
| 848 | |
---|
| 849 | typeset RET |
---|
| 850 | # |
---|
[128] | 851 | if [ X${JobType} = XRUN ] ; then |
---|
| 852 | IGCM_sys_Chmod 444 ${1} |
---|
| 853 | fi |
---|
[2] | 854 | # |
---|
| 855 | #USUAL WAY |
---|
| 856 | mfput $1 $2 > out_rsync 2>&1 |
---|
| 857 | RET=$? |
---|
| 858 | |
---|
| 859 | # #RSYNC WITH NETWORK RSH CALL |
---|
[192] | 860 | # echo ${RSYNC} ${RSYNC_opt} --rsync-path=${REMOTE_RSYNC} -e rsh ${RUN_DIR}/$1 ${RHOST}:${2} > out_rsync 2>&1 |
---|
| 861 | # ${RSYNC} ${RSYNC_opt} --rsync-path=${REMOTE_RSYNC} -e rsh ${RUN_DIR}/$1 ${RHOST}:${2} >> out_rsync 2>&1 |
---|
[2] | 862 | |
---|
| 863 | # #RSYNC WITH NFS USE |
---|
[192] | 864 | # echo ${RSYNC} ${RSYNC_opt} ${RUN_DIR}/$1 ${2} > out_rsync 2>&1 |
---|
| 865 | # ${RSYNC} ${RSYNC_opt} ${RUN_DIR}/$1 ${2} >> out_rsync 2>&1 |
---|
| 866 | |
---|
[2] | 867 | # RET=$? |
---|
| 868 | # IGCM_sys_Rsync_out $RET |
---|
| 869 | |
---|
| 870 | # ${libIGCM}/libIGCM_sys/IGCM_analyse_rsync_out.awk out_rsync |
---|
| 871 | # (( RET=RET+$? )) |
---|
| 872 | |
---|
| 873 | if [ ${RET} -gt 0 ] ; then |
---|
| 874 | echo "IGCM_sys_Put_Rest : error." |
---|
| 875 | cat out_rsync |
---|
| 876 | IGCM_debug_Exit "IGCM_sys_Put_Rest" |
---|
| 877 | fi |
---|
| 878 | else |
---|
[36] | 879 | ( ${DEBUG_debug} ) && echo "DRYRUN mode = " $DRYRUN >> stack |
---|
[2] | 880 | fi |
---|
| 881 | IGCM_debug_PopStack "IGCM_sys_Put_Rest" |
---|
| 882 | } |
---|
| 883 | |
---|
| 884 | #D-#================================================== |
---|
| 885 | #D-function IGCM_sys_Put_Out |
---|
| 886 | #D-* Purpose: Copy a file on $(ARCHIVE) after have chmod it in readonly |
---|
| 887 | #D-* Examples: |
---|
| 888 | #D- |
---|
| 889 | function IGCM_sys_Put_Out { |
---|
| 890 | IGCM_debug_PushStack "IGCM_sys_Put_Out" $@ |
---|
| 891 | if ( $DEBUG_sys ) ; then |
---|
| 892 | echo "IGCM_sys_Put_Out :" $@ |
---|
| 893 | fi |
---|
| 894 | if [ $DRYRUN = 0 ]; then |
---|
| 895 | if [ ! -f ${1} ] ; then |
---|
| 896 | echo "WARNING : IGCM_sys_Put_Out ${1} DOES NOT EXIST ." |
---|
| 897 | IGCM_debug_PopStack "IGCM_sys_Put_Out" |
---|
| 898 | return 1 |
---|
| 899 | fi |
---|
| 900 | |
---|
| 901 | typeset RET |
---|
| 902 | # |
---|
[128] | 903 | if [ X${JobType} = XRUN ] ; then |
---|
[228] | 904 | if [ X${3} = X ] ; then |
---|
| 905 | IGCM_sys_Chmod 444 ${1} |
---|
| 906 | fi |
---|
[128] | 907 | fi |
---|
[2] | 908 | # |
---|
| 909 | #USUAL WAY |
---|
| 910 | mfput $1 $2 > out_rsync 2>&1 |
---|
| 911 | RET=$? |
---|
| 912 | |
---|
| 913 | # #RSYNC WITH NETWORK RSH CALL |
---|
[192] | 914 | # echo ${RSYNC} ${RSYNC_opt} --rsync-path=${REMOTE_RSYNC} -e rsh ${RUN_DIR}/$1 ${RHOST}:${2} > out_rsync 2>&1 |
---|
| 915 | # ${RSYNC} ${RSYNC_opt} --rsync-path=${REMOTE_RSYNC} -e rsh ${RUN_DIR}/$1 ${RHOST}:${2} >> out_rsync 2>&1 |
---|
[2] | 916 | |
---|
| 917 | # #RSYNC WITH NFS USE |
---|
[192] | 918 | # echo ${RSYNC} ${RSYNC_opt} ${RUN_DIR}/$1 ${2} > out_rsync 2>&1 |
---|
| 919 | # ${RSYNC} ${RSYNC_opt} ${RUN_DIR}/$1 ${2} >> out_rsync 2>&1 |
---|
[2] | 920 | |
---|
| 921 | # RET=$? |
---|
| 922 | # IGCM_sys_Rsync_out $RET |
---|
| 923 | |
---|
| 924 | # ${libIGCM}/libIGCM_sys/IGCM_analyse_rsync_out.awk out_rsync |
---|
| 925 | # (( RET=RET+$? )) |
---|
| 926 | |
---|
| 927 | if [ ${RET} -gt 0 ] ; then |
---|
| 928 | echo "IGCM_sys_Put_Out : error." |
---|
| 929 | cat out_rsync |
---|
| 930 | IGCM_debug_Exit "IGCM_sys_Put_Out" |
---|
| 931 | fi |
---|
| 932 | else |
---|
[36] | 933 | ( ${DEBUG_debug} ) && echo "DRYRUN mode = " $DRYRUN >> stack |
---|
[2] | 934 | fi |
---|
| 935 | IGCM_debug_PopStack "IGCM_sys_Put_Out" |
---|
| 936 | return 0 |
---|
| 937 | } |
---|
| 938 | |
---|
| 939 | #D-#================================================== |
---|
| 940 | #D-function IGCM_sys_Get |
---|
| 941 | #D-* Purpose: Get a file from ${ARCHIVE} |
---|
| 942 | #D-* Examples: IGCM_sys_Get myfile /destpath/myfile_with_PREFIX |
---|
| 943 | #D- IGCM_sys_Get /l Array_contain_myfiles /destpath/ |
---|
| 944 | function IGCM_sys_Get { |
---|
| 945 | IGCM_debug_PushStack "IGCM_sys_Get" $@ |
---|
| 946 | |
---|
| 947 | typeset DEST RET dm_liste ifile target |
---|
| 948 | |
---|
| 949 | if ( $DEBUG_sys ) ; then |
---|
| 950 | echo "IGCM_sys_Get :" $@ |
---|
| 951 | fi |
---|
| 952 | if [ $DRYRUN -le 2 ]; then |
---|
| 953 | if [ X${1} = X'/l' ] ; then |
---|
| 954 | # test if the first file is present in the old computation : |
---|
| 955 | eval set +A dm_liste \${${2}} |
---|
| 956 | else |
---|
| 957 | dm_liste=${1} |
---|
| 958 | fi |
---|
| 959 | eval DEST=\${${#}} |
---|
| 960 | |
---|
| 961 | # test if the (first) file is present in the old computation : |
---|
| 962 | IGCM_sys_TestFileArchive ${dm_liste[0]} |
---|
| 963 | RET=$? |
---|
| 964 | if [ ${RET} -gt 0 ] ; then |
---|
| 965 | echo "IGCM_sys_Get, ERROR : regular file ${dm_liste[0]} DOES NOT EXIST ." |
---|
| 966 | IGCM_debug_Exit "IGCM_sys_Get" |
---|
[192] | 967 | IGCM_debug_PopStack "IGCM_sys_Get" |
---|
[2] | 968 | return |
---|
| 969 | fi |
---|
| 970 | |
---|
| 971 | # SD : dm_liste is not suited for computing job |
---|
| 972 | # because we change filename during transfert |
---|
| 973 | # dm_liste is better suited for post-treatment |
---|
| 974 | #dm_liste=" " |
---|
| 975 | #(( ifile=1 )) |
---|
| 976 | #while [ $ifile -lt $# ] ; do |
---|
| 977 | # dm_liste=$( eval echo ${dm_liste} " "\${${ifile}} ) |
---|
| 978 | # (( ifile = ifile + 1 )) |
---|
| 979 | #done |
---|
| 980 | #DEST=$( eval echo \${${#}} ) |
---|
| 981 | |
---|
| 982 | #USUAL WAY |
---|
| 983 | mfget ${dm_liste[*]} ${DEST} > out_rsync 2>&1 |
---|
| 984 | RET=$? |
---|
| 985 | |
---|
| 986 | # #RSYNC WITH NETWORK RSH CALL |
---|
[192] | 987 | # echo ${RSYNC} ${RSYNC_opt} --rsync-path=${REMOTE_RSYNC} -e rsh ${RHOST}:"${dm_liste}" ${RHOST}:${RUN_DIR}/${DEST} > out_rsync 2>&1 |
---|
| 988 | # ${RSYNC} ${RSYNC_opt} --rsync-path=${REMOTE_RSYNC} -e rsh ${RHOST}:"${dm_liste}" ${RHOST}:${RUN_DIR}/${DEST} >> out_rsync 2>&1 |
---|
[2] | 989 | |
---|
| 990 | # #RSYNC WITH NFS USE |
---|
[192] | 991 | # echo ${RSYNC} ${RSYNC_opt} ${dm_liste} ${RUN_DIR}/${DEST} > out_rsync 2>&1 |
---|
| 992 | # ${RSYNC} ${RSYNC_opt} ${dm_liste} ${RUN_DIR}/${DEST} >> out_rsync 2>&1 |
---|
[2] | 993 | |
---|
| 994 | # RET=$? |
---|
| 995 | # IGCM_sys_Rsync_out $RET |
---|
| 996 | |
---|
| 997 | # ${libIGCM}/libIGCM_sys/IGCM_analyse_rsync_out.awk out_rsync |
---|
| 998 | # (( RET=RET+$? )) |
---|
| 999 | |
---|
| 1000 | if [ ${RET} -gt 0 ] ; then |
---|
| 1001 | echo "IGCM_sys_Get : copy error." |
---|
| 1002 | cat out_rsync |
---|
| 1003 | IGCM_debug_Exit "IGCM_sys_Get" |
---|
| 1004 | fi |
---|
| 1005 | else |
---|
[36] | 1006 | ( ${DEBUG_debug} ) && echo "DRYRUN mode = " $DRYRUN >> stack |
---|
[2] | 1007 | fi |
---|
| 1008 | IGCM_debug_PopStack "IGCM_sys_Get" |
---|
| 1009 | } |
---|
| 1010 | |
---|
| 1011 | ############################################################## A FINIR !! |
---|
| 1012 | |
---|
| 1013 | #D-#================================================== |
---|
| 1014 | #D-function IGCM_sys_GetDate_FichWork |
---|
| 1015 | #D-* Purpose: donne la date filesys d'un fichier sur le filesystem WORK |
---|
| 1016 | #D-* Examples: |
---|
| 1017 | #D- |
---|
| 1018 | function IGCM_sys_GetDate_FichWork { |
---|
| 1019 | IGCM_debug_PushStack "IGCM_sys_FichWork" $@ |
---|
| 1020 | if ( $DEBUG_sys ) ; then |
---|
| 1021 | echo "IGCM_sys_GetDate_FichWork :" $@ |
---|
| 1022 | fi |
---|
| 1023 | # donne la date filesys d'un fichier sur la machine work |
---|
| 1024 | IGCM_debug_PopStack "IGCM_sys_FichWork" |
---|
| 1025 | } |
---|
| 1026 | |
---|
| 1027 | #D-#================================================== |
---|
| 1028 | #D-function IGCM_sys_GetDate_FichArchive |
---|
[17] | 1029 | #D-* Purpose: donne la date filesys d'un fichier sur le filesystem ARCHIVE |
---|
[2] | 1030 | #D-* Examples: |
---|
| 1031 | #D- |
---|
| 1032 | function IGCM_sys_GetDate_FichArchive { |
---|
| 1033 | IGCM_debug_PushStack "IGCM_sys_FichArchive" $@ |
---|
| 1034 | if ( $DEBUG_sys ) ; then |
---|
| 1035 | echo "IGCM_sys_GetDate_FichArchive :" $@ |
---|
| 1036 | fi |
---|
| 1037 | IGCM_debug_PopStack "IGCM_sys_FichArchive" |
---|
| 1038 | } |
---|
| 1039 | |
---|
| 1040 | ############################################################## |
---|
| 1041 | # REBUILD OPERATOR |
---|
| 1042 | |
---|
| 1043 | function IGCM_sys_rebuild { |
---|
| 1044 | IGCM_debug_PushStack "IGCM_sys_rebuild" -- $@ |
---|
| 1045 | if ( $DEBUG_sys ) ; then |
---|
| 1046 | echo "IGCM_sys_rebuild :" $@ |
---|
| 1047 | fi |
---|
| 1048 | /home/rech/psl/rpsl035/SX/bin/rebuild -f -o $@ |
---|
| 1049 | if [ $? -gt 0 ] ; then |
---|
| 1050 | echo "IGCM_sys_rebuild : erreur ${@}." |
---|
| 1051 | IGCM_debug_Exit "rebuild" |
---|
| 1052 | fi |
---|
| 1053 | |
---|
| 1054 | IGCM_debug_PopStack "IGCM_sys_rebuild" |
---|
| 1055 | } |
---|
| 1056 | |
---|
| 1057 | ############################################################ |
---|
| 1058 | # Activate Running Environnment Variables |
---|
| 1059 | |
---|
| 1060 | function IGCM_sys_activ_variables { |
---|
| 1061 | IGCM_debug_PushStack "IGCM_sys_activ_variables" |
---|
| 1062 | if ( $DEBUG_sys ) ; then |
---|
[192] | 1063 | echo "IGCM_sys_activ_variables" |
---|
[2] | 1064 | fi |
---|
| 1065 | |
---|
| 1066 | # -------------------------------------------------------------------- |
---|
| 1067 | #D- MPI specifications |
---|
| 1068 | # -------------------------------------------------------------------- |
---|
| 1069 | |
---|
| 1070 | #D-- MPISUSPEND |
---|
[136] | 1071 | export MPISUSPEND=${MPISUSPEND:=OFF} |
---|
| 1072 | |
---|
| 1073 | #D-- MPIPROGINF #other choices : ALL_DETAIL2 |
---|
[2] | 1074 | export MPIPROGINF=ALL |
---|
[136] | 1075 | #D- activate ftrace (with -ftrace) |
---|
| 1076 | export F_FTRACE=YES |
---|
| 1077 | #D- communication information (with -ftrace) |
---|
| 1078 | export MPICOMMINF=DETAIL |
---|
[2] | 1079 | |
---|
| 1080 | # -------------------------------------------------------------------- |
---|
| 1081 | #D- Other specifications |
---|
| 1082 | # -------------------------------------------------------------------- |
---|
| 1083 | |
---|
| 1084 | #D- max number of character/line in output job |
---|
| 1085 | export F_SYSLEN=5000 |
---|
| 1086 | #D- number of error that can be admitted on the NEC |
---|
| 1087 | export F_ERRCNT=0 |
---|
| 1088 | #D- global performance |
---|
| 1089 | export F_PROGINF=DETAIL |
---|
[136] | 1090 | |
---|
[2] | 1091 | #D- I/O performance (FORTRAN I/O only not netCDF) |
---|
[136] | 1092 | export F_FILEINF=${F_FILEINF:=NO} |
---|
| 1093 | #D- netCDF I/O performance |
---|
| 1094 | export NC_FILEINF=${NC_FILEINF:=NO} |
---|
[2] | 1095 | |
---|
| 1096 | IGCM_debug_PopStack "IGCM_sys_activ_variables" |
---|
| 1097 | } |
---|
| 1098 | |
---|
| 1099 | ############################################################ |
---|
| 1100 | # Desactivate Running Environnment Variables |
---|
| 1101 | |
---|
| 1102 | function IGCM_sys_desactiv_variables { |
---|
| 1103 | IGCM_debug_PushStack "IGCM_sys_desactiv_variables" |
---|
| 1104 | if ( $DEBUG_sys ) ; then |
---|
[192] | 1105 | echo "IGCM_sys_desactiv_variables" |
---|
[2] | 1106 | fi |
---|
| 1107 | # -------------------------------------------------------------------- |
---|
| 1108 | #D- MPI specifications |
---|
| 1109 | # -------------------------------------------------------------------- |
---|
| 1110 | |
---|
| 1111 | #D-- MPIPROGINF |
---|
| 1112 | export MPIPROGINF=NO |
---|
| 1113 | |
---|
| 1114 | # -------------------------------------------------------------------- |
---|
| 1115 | #D- Other specifications |
---|
| 1116 | # -------------------------------------------------------------------- |
---|
| 1117 | |
---|
| 1118 | #D- global performance |
---|
| 1119 | export F_PROGINF=NO |
---|
| 1120 | |
---|
| 1121 | IGCM_debug_PopStack "IGCM_sys_desactiv_variables" |
---|
| 1122 | |
---|
| 1123 | } |
---|
| 1124 | |
---|
| 1125 | ############################################################ |
---|
| 1126 | # Build run file |
---|
| 1127 | |
---|
| 1128 | function IGCM_sys_build_run_file { |
---|
| 1129 | IGCM_debug_PushStack "IGCM_sys_build_run_file" $@ |
---|
| 1130 | if ( $DEBUG_sys ) ; then |
---|
| 1131 | echo "IGCM_sys_build_run_file " $@ |
---|
| 1132 | fi |
---|
| 1133 | (( NUM_PROC_ATM = BATCH_NUM_PROC_TOT - 1 )) |
---|
| 1134 | (( NUM_PROC_OASIS = BATCH_NUM_PROC_TOT - NUM_PROC_ATM )) |
---|
| 1135 | (( NUM_PROC_OCE = BATCH_NUM_PROC_TOT - NUM_PROC_ATM )) |
---|
| 1136 | |
---|
| 1137 | if [ $1 = MPI2 ]; then |
---|
| 1138 | cat <<EOF > run_file |
---|
| 1139 | -p 1 -np 1 -e ./oasis |
---|
| 1140 | EOF |
---|
| 1141 | (( NUM_PROCESS = BATCH_NUM_PROC_TOT + 1 )) |
---|
| 1142 | config_UserChoices_JobRunOptions='"-max_np ${NUM_PROCESS} -f"' |
---|
| 1143 | |
---|
| 1144 | elif [ $1 = MPI1 ]; then |
---|
| 1145 | cat <<EOF > run_file |
---|
| 1146 | -p $NUM_PROC_OASIS -e ./oasis |
---|
| 1147 | -p $NUM_PROC_ATM -e ./lmdz.x |
---|
| 1148 | -p $NUM_PROC_OCE -e ./opa.xx |
---|
| 1149 | EOF |
---|
| 1150 | |
---|
| 1151 | fi |
---|
| 1152 | |
---|
| 1153 | IGCM_debug_PopStack "IGCM_sys_build_run_file" |
---|
| 1154 | |
---|
| 1155 | } |
---|