#!/bin/ksh #************************************************************** # Author: Sebastien Denvil, Martial Mancip # Contact: Martial.Mancip_ipsl.jussieu.fr # $Date$ # $Author$ # $Revision$ # IPSL (2006) # This software is governed by the CeCILL licence see libIGCM/libIGCM_CeCILL.LIC # History: # Modification: # #************************************************************** #========================================================= # The documentation of this file can be automatically generated # if you use the prefix #D- for comments to be extracted. # Extract with command: cat lib* | grep "^#D-" | cut -c "4-" #========================================================= #D-#================================================== #D-LibIGCM_sys for IPSL calculo #D-#================================================== #D- #D- This ksh library if a layer under some usefull #D- environment variables and shell commands. #D- All those definitions depend on host particularities. #D- It manages a stack mechanism and test validity of operations. #D- All function described bellow must be prefixed by IGCM_sys. #==================================================== # libIGCM_sys PARAMETERS #==================================================== #==================================================== #set DEBUG_sys to true to output calls of function typeset -r DEBUG_sys=${DEBUG_sys:=true} #==================================================== # Turn in dry run mode ? (sys_Put_Rest, sys_Put_Out, sys_Get) typeset -r DRYRUN=${DRYRUN:=0} # YOU MUST COMPILE YOUR EXE FILES FOR DRYRUN MODE ! # ------------------------------------------------------------------------------------- # | DRYRUN= | Date computations, | sys_Get | Exe | sys_Put_Out; sys_Put_Rest | # | | Cp/Exe param files | | Chmod | | # | | Qsub | | | | # ------------------------------------------------------------------------------------- # | 0 | yes | yes | yes | yes | # ------------------------------------------------------------------------------------- # | 1 | yes | yes | yes | no | # ------------------------------------------------------------------------------------- # | 2 | yes | yes | no | no | # ------------------------------------------------------------------------------------- # | 3 | yes | no | no | no | # ------------------------------------------------------------------------------------- #===================================================== #Global Variables : #===================================================== # Language : "fr" or "en" typeset -r MYLANG="fr" #===================================================== # Host and user names # $hostname ou hostname typeset -r HOST=$( hostname ) # $username ou whoami typeset -r LOGIN=$( whoami ) #D- #D-#================================================== #D-Program used in libIGCM #D-#================================================== # rsync with path typeset -r RSYNC=/usr/bin/rsync #RSYNC_opt args to rsync typeset -r RSYNC_opt="-Lt -v" #==================================================== # Source Ferret . /usr/local/ferret/ferret_paths_ksh . /home/brocksce/.atlas_env_calcul_ksh export FER_DATA="$FER_DATA /home/mc2ipsl/temp_local/grids" #========================================================= # Host specific DIRECTORIES #==================================================== #==================================================== #- R_EXE (==> BIN_DIR = ${MODIPSL}/bin ) typeset -r R_EXE="${MODIPSL}/bin" #==================================================== #- libIGCM_POST typeset -r libIGCM_POST=${libIGCM} #==================================================== #- SCRATCHDIR (=> ${R_DONNEES}) typeset -r SCRATCHDIR=/home/${LOGIN}/TEMP_LOCAL #==================================================== #- SUBMIT_DIR : submission dir typeset SUBMIT_DIR=${SUBMIT_DIR:=${PWD}} #==================================================== #- ARCHIVE typeset -r ARCHIVE=/home #==================================================== #- IN typeset -r R_IN=${R_IN:=${ARCHIVE}/${LOGIN}/TEMP_LOCAL/SCRIPTS} #==================================================== #- OUT typeset -r R_OUT=${ARCHIVE}/${LOGIN}/TEMP_LOCAL/SCRIPTS/IGCM_OUT #==================================================== #- OUT_POST typeset -r R_OUT_POST=${SCRATCHDIR} #==================================================== #- RUN_DIR_PATH : Temporary working directory (=> TMP) typeset -r RUN_DIR_PATH=${RUN_DIR_PATH:=${SCRATCHDIR}/tmp$$} #========================================================= #- Add "time" before mpirun command MPIRUN_COMMAND="time "${MPIRUN_COMMAND} echo ${MPIRUN_COMMAND} #==================================================== #- Max number of arguments passed to nco operator or demigration command UNIX_MAX_LIMIT=360 #D-#================================================== #D-function IGCM_sys_RshMaster #D-* Purpose: Master rsh command #D-* Examples: #D- function IGCM_sys_RshMaster { IGCM_debug_PushStack "IGCM_sys_RshMaster" $@ ssh ${HOST} /bin/ksh <<-EOF export libIGCM=${libIGCM} . ${libIGCM}/libIGCM_debug/libIGCM_debug.ksh . ${libIGCM}/libIGCM_card/libIGCM_card.ksh ${@} EOF if [ $? -gt 0 ] ; then echo "IGCM_sys_RshMaster : erreur." IGCM_debug_Exit "IGCM_sys_RshMaster" fi IGCM_debug_PopStack "IGCM_sys_RshMaster" } #D-#================================================== #D-function IGCM_sys_RshArchive #D-* Purpose: Archive rsh command #D-* Examples: #D- function IGCM_sys_RshArchive { IGCM_debug_PushStack "IGCM_sys_RshArchive" $@ /bin/ksh <<-EOF ${@} EOF if [ $? -gt 0 ] ; then echo "IGCM_sys_RshArchive : erreur." IGCM_debug_Exit "IGCM_sys_RshArchive" fi IGCM_debug_PopStack "IGCM_sys_RshArchive" } #D-#================================================== #D-function IGCM_sys_RshPost #D-* Purpose: Master rsh command #D-* Examples: #D- (( RshPNum = 0 )) function IGCM_sys_RshPost { IGCM_debug_PushStack "IGCM_sys_RshPost" $@ if ( $DEBUG_sys ) ; then echo "IGCM_sys_RshPost :" $@ fi #ssh ${HOST} exec /bin/ksh -vx $@ > out_RshPost.${RshPNum} ssh ${HOST} exec /bin/ksh $@ > out_RshPost.${RshPNum} if [ $? -gt 0 ] ; then echo "IGCM_sys_RshPost : erreur." IGCM_debug_Exit "IGCM_sys_RshPost" fi (( RshPNum = RshPNum + 1 )) IGCM_debug_PopStack "IGCM_sys_RshPost" } #D-#================================================== #D-function IGCM_sys_Mkdir #D-* Purpose: Master locale mkdir command #D-* Examples: #D- function IGCM_sys_Mkdir { IGCM_debug_PushStack "IGCM_sys_Mkdir" $@ if ( $DEBUG_sys ) ; then echo "IGCM_sys_Mkdir :" $@ fi if [ ! -d ${1} ]; then \mkdir -p $1 if [ $? -gt 0 ] ; then echo "IGCM_sys_Mkdir : erreur." IGCM_debug_Exit "IGCM_sys_Mkdir" fi fi # vérification : if [ ! -d ${1} ] ; then echo "IGCM_sys_Mkdir : erreur." IGCM_debug_Exit "IGCM_sys_Mkdir" fi IGCM_debug_PopStack "IGCM_sys_Mkdir" } #D-#================================================== #D-function IGCM_sys_MkdirArchive #D-* Purpose: Mkdir on Archive #D-* Examples: #D- function IGCM_sys_MkdirArchive { IGCM_debug_PushStack "IGCM_sys_MkdirArchive" $@ if ( $DEBUG_sys ) ; then echo "IGCM_sys_MkdirArchive :" $@ fi #- creation de repertoire sur le serveur fichier if [ ! -d ${1} ]; then \mkdir -p $1 if [ $? -gt 0 ] ; then echo "IGCM_sys_MkdirArchive : erreur." IGCM_debug_Exit "IGCM_sys_MkdirArchive" fi fi # vérification ?? : if [ ! -d ${1} ] ; then echo "IGCM_sys_MkdirArchive : erreur." IGCM_debug_Exit "IGCM_sys_MkdirArchive" fi IGCM_debug_PopStack "IGCM_sys_MkdirArchive" } #D-#================================================== #D-function IGCM_sys_MkdirWork #D-* Purpose: Mkdir on Work #D-* Examples: #D- function IGCM_sys_MkdirWork { IGCM_debug_PushStack "IGCM_sys_MkdirWork" $@ if ( $DEBUG_sys ) ; then echo "IGCM_sys_MkdirWork :" $@ fi #- creation de repertoire sur le serveur fichier if [ ! -d ${1} ]; then \mkdir -p $1 if [ $? -gt 0 ] ; then echo "IGCM_sys_MkdirWork : erreur." IGCM_debug_Exit "IGCM_sys_MkdirWork" fi fi # vérification ?? : if [ ! -d ${1} ] ; then echo "IGCM_sys_MkdirWork : erreur." IGCM_debug_Exit "IGCM_sys_MkdirWork" fi IGCM_debug_PopStack "IGCM_sys_MkdirWork" } IGCM_sys_MkdirWork ${RUN_DIR_PATH} echo "RUN_DIR_PATH ${RUN_DIR_PATH} ok." #D-#================================================== #D-function IGCM_sys_Cd #D-* Purpose: master cd command #D-* Examples: #D- function IGCM_sys_Cd { IGCM_debug_PushStack "IGCM_sys_Cd" $@ if ( $DEBUG_sys ) ; then echo "IGCM_sys_Cd :" $@ fi \cd $1 if [ $? -gt 0 ] ; then echo "IGCM_sys_Cd : erreur." IGCM_debug_Exit "IGCM_sys_Cd" fi IGCM_debug_PopStack "IGCM_sys_Cd" } #D-#================================================== #D-function IGCM_sys_Chmod #D-* Purpose: Chmod #D-* Examples: #D- function IGCM_sys_Chmod { IGCM_debug_PushStack "IGCM_sys_Chmod" $@ if ( $DEBUG_sys ) ; then echo "IGCM_sys_Chmod :" $@ fi if [ $DRYRUN -le 1 ]; then \chmod $@ if [ $? -gt 0 ] ; then echo "IGCM_sys_Chmod : erreur." IGCM_debug_Exit "IGCM_sys_Chmod" fi else ( ${DEBUG_debug} ) && echo "DRYRUN mode = " $DRYRUN >> stack fi IGCM_debug_PopStack "IGCM_sys_Chmod" } #D-#================================================== #D-function IGCM_sys_FileSize #D-* Purpose: Filesize #D-* Examples: #D- function IGCM_sys_FileSize { IGCM_debug_PushStack "IGCM_sys_FileSize" $@ typeset sizeF set +A sizeF -- $( ls -la ${1} ) if [ $? -gt 0 ] ; then IGCM_debug_Exit "IGCM_sys_FileSize" fi eval ${2}=${sizeF[4]} IGCM_debug_PopStack "IGCM_sys_FileSize" } #D-#================================================== #D-function IGCM_sys_TestDir #D-* Purpose: Test Directory that must exists #D-* Examples: #D- function IGCM_sys_TestDir { IGCM_debug_PushStack "IGCM_sys_TestDir" $@ if ( $DEBUG_sys ) ; then echo "IGCM_sys_TestDir :" $@ fi typeset ExistFlag ExistFlag=$( [ -d $1 ] && echo 0 || echo 1 ) IGCM_debug_PopStack "IGCM_sys_TestDir" return ${ExistFlag} } #D-#================================================== #D-function IGCM_sys_TestDirArchive #D-* Purpose: Test Directory that must exists on Archive #D-* Examples: #D- function IGCM_sys_TestDirArchive { IGCM_debug_PushStack "IGCM_sys_TestDirArchive" $@ if ( $DEBUG_sys ) ; then echo "IGCM_sys_TestDirArchive :" $@ fi typeset ExistFlag ExistFlag=$( [ -d $1 ] && echo 0 || echo 1 ) IGCM_debug_PopStack "IGCM_sys_TestDirArchive" return ${ExistFlag} } #D-#================================================== #D-function IGCM_sys_TestFileArchive #D-* Purpose: Test file that must NOT EXISTS on Archive #D-* Examples: #D- function IGCM_sys_TestFileArchive { IGCM_debug_PushStack "IGCM_sys_TestFileArchive" $@ if ( $DEBUG_sys ) ; then echo "IGCM_sys_TestFileArchive :" $@ fi typeset ExistFlag ExistFlag=$( [ -f $1 ] && echo 0 || echo 1 ) IGCM_debug_PopStack "IGCM_sys_TestFileArchive" return ${ExistFlag} } #D-#================================================== #D-function IGCM_sys_CountFileArchive #D-* Purpose: Count files on Archive filesystem #D-* Examples: #D- function IGCM_sys_CountFileArchive { IGCM_debug_PushStack "IGCM_sys_CountFileArchive" $@ ls ${@} 2>/dev/null | wc -l if [ $? -gt 0 ] ; then echo "IGCM_sys_CountFileArchive : erreur." fi IGCM_debug_PopStack "IGCM_sys_CountFileArchive" } #D-#================================================== #D-function IGCM_sys_Tree #D-* Purpose: Tree directories with files on ${ARCHIVE} #D-* Examples: IGCM_sys_Tree ${R_IN} ${R_OUT} #D- function IGCM_sys_Tree { IGCM_debug_PushStack "IGCM_sys_Tree" $@ if ( $DEBUG_sys ) ; then echo "IGCM_sys_Tree :" $@ fi /home/mmaipsl/BIN/tree -f $@ IGCM_debug_PopStack "IGCM_sys_Tree" } #D-#================================================== #D-function IGCM_sys_Tar #D-* Purpose: master un-tar command #D-* Examples: #D- function IGCM_sys_Tar { IGCM_debug_PushStack "IGCM_sys_Tar" $@ if ( $DEBUG_sys ) ; then echo "IGCM_sys_Tar :" $@ fi \tar cvf $@ if [ $? -gt 0 ] ; then echo "IGCM_sys_Tar : erreur." IGCM_debug_Exit "IGCM_sys_Tar" fi \tar tvf $1 IGCM_debug_PopStack "IGCM_sys_Tar" } #D-#================================================== #D-function IGCM_sys_UnTar #D-* Purpose: master un-tar command #D-* Examples: #D- function IGCM_sys_UnTar { IGCM_debug_PushStack "IGCM_sys_UnTar" $@ if ( $DEBUG_sys ) ; then echo "IGCM_sys_UnTar :" $@ fi \tar xvf $1 if [ $? -gt 0 ] ; then echo "IGCM_sys_UnTar : erreur." IGCM_debug_Exit "IGCM_sys_UnTar" fi IGCM_debug_PopStack "IGCM_sys_UnTar" } #D-#================================================== #D-function IGCM_sys_Qsub #D-* Purpose: Qsub new job #D-* Examples: #D- function IGCM_sys_Qsub { IGCM_debug_PushStack "IGCM_sys_Qsub" $@ if ( $DEBUG_sys ) ; then echo "IGCM_sys_Qsub :" $@ fi echo "ssh -l ${LOGIN} ${HOST} ""cd ${SUBMIT_DIR} ; ${@}"" > ${Script_Output} 2>&1 &" ssh -l ${LOGIN} ${HOST} "cd ${SUBMIT_DIR} ; ${@}" > ${Script_Output} 2>&1 & if [ $? -gt 0 ] ; then echo "IGCM_sys_Qsub : erreur." IGCM_debug_Exit "IGCM_sys_Qsub" fi IGCM_debug_PopStack "IGCM_sys_Qsub" } #D-#================================================== #D-function IGCM_sys_QsubPost #D-* Purpose: Qsub new job on scalaire #D-* Examples: #D- function IGCM_sys_QsubPost { IGCM_debug_PushStack "IGCM_sys_QsubPost" $@ if ( $DEBUG_sys ) ; then echo "IGCM_sys_QsubPost :" $@ fi #echo "ssh -x -l ${LOGIN} ${HOST} ${3} > ${2} 2>&1 &" # ssh -x -l ${LOGIN} ${HOST} echo "${3} > ${2} 2>&1 &" ${3} > ${2} 2>&1 & if [ $? -gt 0 ] ; then echo "IGCM_sys_QsubPost : erreur." IGCM_debug_Exit "IGCM_sys_QsubPost" fi IGCM_debug_PopStack "IGCM_sys_QsubPost" } #D-************************* #D- File transfer functions #D-************************* #D- #D-#================================================== #D-function IGCM_sys_Rsync_out #D-* Purpose: treat return val of rsync #D-* Examples: IGCM_sys_Rsync_out out_RET_rsync #D- Error values and explanations can depend on your system version. function IGCM_sys_Rsync_out { RET=$1 if [ ! $RET ] ; then echo "rsync error !" fi if [ $MYLANG = "fr" ]; then case $RET in 0) return ;; 1) echo "Erreur de rsync ; RERR_SYNTAX : " echo "Erreur de syntaxe ou d'utilisation." return;; 2) echo "Erreur de rsync ; RERR_PROTOCOL : " echo "Incompatibilité de protocole." return;; 3) echo "Erreur de rsync ; RERR_FILESELECT 3" echo "Erreurs lors de la sélection des fichiers d'entrée sortie et" echo "répertoires" return;; 4) echo "Erreur de rsync ; RERR_UNSUPPORTED" echo "Action demandée non supportée : une tentative de manipulation de" echo "fichiers 64-bits sur une plate-forme qui ne les supporte pas a" echo "été faite ; ou une option qui est supportée par le client mais" echo "pas par le serveur a été spécifiée." return;; 10) echo "Erreur de rsync ; RERR_SOCKETIO" echo "Erreur dans le socket d'entrée sortie" return;; 11) echo "Erreur de rsync ; RERR_FILEIO" echo "Erreur d'entrée sortie fichier" return;; 12) echo "Erreur de rsync ; RERR_STREAMIO" echo "Erreur dans flux de donnée du protocole rsync" return;; 13) echo "Erreur de rsync ; RERR_MESSAGEIO" echo "Erreur avec les diagnostics du programme" return;; 14) echo "Erreur de rsync ; RERR_IPC" echo "Erreur dans le code IPC" return;; 20) echo "Erreur de rsync ; RERR_SIGNAL" echo "SIGUSR1 ou SIGINT reçu" return;; 21) echo "Erreur de rsync ; RERR_WAITCHILD" echo "Une erreur retournée par waitpid()" return;; 22) echo "Erreur de rsync ; RERR_MALLOC" echo "Erreur lors de l'allocation des tampons de mémoire de coeur" return;; 23) echo "" echo "Erreur fichier inexistant" return;; 30) echo "Erreur de rsync ; RERR_TIMEOUT" echo "Temps d'attente écoulé dans l'envoi/réception de données" return;; *) echo "Erreur de rsync : code de retour de rsync inconnu :" $RET return;; esac elif [ $MYLANG = "en" ] ; then case $RET in 0) return;; 1) echo "rsync error : Syntax or usage error " return;; 2) echo "rsync error : Protocol incompatibility " return;; 3) echo "rsync error : Errors selecting input/output files, dirs" return;; 4) echo "rsync error : Requested action not supported: an attempt" echo "was made to manipulate 64-bit files on a platform that cannot support" echo "them; or an option was specified that is supported by the client and" echo "not by the server." return;; 5) echo "rsync error : Error starting client-server protocol" return;; 10) echo "rsync error : Error in socket I/O " return;; 11) echo "rsync error : Error in file I/O " return;; 12) echo "rsync error : Error in rsync protocol data stream " return;; 13) echo "rsync error : Errors with program diagnostics " return;; 14) echo "rsync error : Error in IPC code " return;; 20) echo "rsync error : Received SIGUSR1 or SIGINT " return;; 21) echo "rsync error : Some error returned by waitpid() " return;; 22) echo "rsync error : Error allocating core memory buffers " return;; 23) echo "rsync error : Partial transfer due to error" return;; 24) echo "rsync error : Partial transfer due to vanished source files" return;; 30) echo "rsync error : Timeout in data send/receive " return;; *) echo "rsync error : return code of rsync unknown :" $RET return;; esac else echo "unknown language $MYLANG." return fi } #D-#================================================== #D-function IGCM_sys_Cp #D-* Purpose: generic cp #D-* Examples: #D- function IGCM_sys_Cp { IGCM_debug_PushStack "IGCM_sys_Cp" $@ if ( $DEBUG_sys ) ; then echo "IGCM_sys_Cp :" $@ fi typeset RET echo cp --preserve=timestamps $@ > out_rsync 2>&1 \cp --preserve=timestamps $@ >> out_rsync 2>&1 RET=$? if [ ${RET} -gt 0 ] ; then echo "IGCM_sys_Cp : error." cat out_rsync IGCM_debug_Exit "IGCM_sys_Cp" fi IGCM_debug_PopStack "IGCM_sys_Cp" } #D-#================================================== #D-function IGCM_sys_Rm #D-* Purpose: generic rm #D-* Examples: #D- function IGCM_sys_Rm { IGCM_debug_PushStack "IGCM_sys_Rm" $@ if ( $DEBUG_sys ) ; then echo "IGCM_sys_Rm :" $@ fi typeset RET echo rm $@ > out_rsync 2>&1 \rm $@ >> out_rsync 2>&1 RET=$? if [ ${RET} -gt 0 ] ; then echo "IGCM_sys_Rm : error." cat out_rsync IGCM_debug_Exit "IGCM_sys_Rm" fi IGCM_debug_PopStack "IGCM_sys_Rm" } #D-#================================================== #D-function IGCM_sys_Mv #D-* Purpose: generic move #D-* Examples: #D- function IGCM_sys_Mv { IGCM_debug_PushStack "IGCM_sys_Mv" $@ if ( $DEBUG_sys ) ; then echo "IGCM_sys_Mv :" $@ fi typeset RET echo mv $@ > out_rsync 2>&1 \mv $@ >> out_rsync 2>&1 RET=$? if [ ${RET} -gt 0 ] ; then echo "IGCM_sys_Mv : error in mv." cat out_rsync IGCM_debug_Exit "IGCM_sys_Mv" fi IGCM_debug_PopStack "IGCM_sys_Mv" } #D-#================================================== #D-function IGCM_sys_Put_Dir #D-* Purpose: Copy a complete directory on $(ARCHIVE) #D-* Examples: #D- function IGCM_sys_Put_Dir { IGCM_debug_PushStack "IGCM_sys_Put_Dir" $@ if ( $DEBUG_sys ) ; then echo "IGCM_sys_Put_Dir :" $@ fi if [ $DRYRUN = 0 ]; then if [ ! -d ${1} ] ; then echo "WARNING : IGCM_sys_Put_Dir ${1} DOES NOT EXIST ." IGCM_debug_PopStack "IGCM_sys_Put_Dir" return fi typeset RET # #USUAL WAY \cp -R $1 $2 > out_rsync 2>&1 RET=$? if [ ${RET} -gt 0 ] ; then echo "IGCM_sys_Put_Dir : error." cat out_rsync IGCM_debug_Exit "IGCM_sys_Put_Dir" fi else ( ${DEBUG_debug} ) && echo "DRYRUN mode = " $DRYRUN >> stack fi IGCM_debug_PopStack "IGCM_sys_Put_Dir" } #D-#================================================== #D-function IGCM_sys_Get_Dir #D-* Purpose: Copy a complete directory from $(ARCHIVE) #D-* Examples: #D- function IGCM_sys_Get_Dir { IGCM_debug_PushStack "IGCM_sys_Get_Dir" $@ if ( $DEBUG_sys ) ; then echo "IGCM_sys_Get_Dir :" $@ fi if [ $DRYRUN = 0 ]; then if [ ! -d ${1} ] ; then echo "WARNING : IGCM_sys_Get_Dir ${1} DOES NOT EXIST ." IGCM_debug_PopStack "IGCM_sys_Get_Dir" return fi typeset RET # Only if we use rsync #IGCM_sys_TestDirArchive $( dirname $2 ) # #USUAL WAY \cp -R $1 $2 > out_rsync 2>&1 RET=$? if [ ${RET} -gt 0 ] ; then echo "IGCM_sys_Get_Dir : error." cat out_rsync IGCM_debug_Exit "IGCM_sys_Get_Dir" fi else ( ${DEBUG_debug} ) && echo "DRYRUN mode = " $DRYRUN >> stack fi IGCM_debug_PopStack "IGCM_sys_Get_Dir" } #D-#================================================== #D-function IGCM_sys_Get_Master #D-* Purpose: Copy a complete directory from MASTER filesystem #D-* Examples: #D- function IGCM_sys_Get_Master { IGCM_debug_PushStack "IGCM_sys_Get_Master" $@ if ( $DEBUG_sys ) ; then echo "IGCM_sys_Get_Master :" $@ fi if [ $DRYRUN = 0 ]; then if [ ! -d ${1} ] ; then echo "WARNING : IGCM_sys_Get_Master ${1} DOES NOT EXIST ." IGCM_debug_PopStack "IGCM_sys_Get_Master" return fi typeset RET sleep 60 #USUAL WAY \cp -R $1 $2 > out_rsync 2>&1 RET=$? if [ ${RET} -gt 0 ] ; then echo "IGCM_sys_Get_Master : error." cat out_rsync IGCM_debug_Exit "IGCM_sys_Get_Master" fi else ( ${DEBUG_debug} ) && echo "DRYRUN mode = " $DRYRUN >> stack fi IGCM_debug_PopStack "IGCM_sys_Get_Master" } #D-#================================================== #D-function IGCM_sys_Put_Rest #D-* Purpose: commande de transfert des restarts $(ARCHIVE). #D- Quitte si le fichier ou si le répertoire d'arriver n'existe pas. #D-* Examples: #D- function IGCM_sys_Put_Rest { IGCM_debug_PushStack "IGCM_sys_Put_Rest" $@ if ( $DEBUG_sys ) ; then echo "IGCM_sys_Put_Rest :" $@ fi if [ $DRYRUN = 0 ]; then IGCM_sys_TestDirArchive $( dirname $2 ) if [ ! -f ${1} ] ; then echo "ERROR : IGCM_sys_Put_Rest ${1} DOES NOT EXIST ." IGCM_debug_Exit "IGCM_sys_Put_Rest" fi IGCM_sys_Chmod 444 ${1} typeset RET echo ${RSYNC} ${RSYNC_opt} $1 $2 > out_rsync 2>&1 ${RSYNC} ${RSYNC_opt} $1 $2 >> out_rsync 2>&1 RET=$? IGCM_sys_Rsync_out $RET ${libIGCM}/libIGCM_sys/IGCM_analyse_rsync_out.awk out_rsync (( RET=RET+$? )) if [ ${RET} -gt 0 ] ; then echo "IGCM_sys_Put_Rest : error." cat out_rsync IGCM_debug_Exit "IGCM_sys_Put_Rest" fi else ( ${DEBUG_debug} ) && echo "DRYRUN mode = " $DRYRUN >> stack fi IGCM_debug_PopStack "IGCM_sys_Put_Rest" } #D-#================================================== #D-function IGCM_sys_Put_Out #D-* Purpose: Copy a file on $(ARCHIVE) after have chmod it in readonly #D-* Examples: #D- function IGCM_sys_Put_Out { IGCM_debug_PushStack "IGCM_sys_Put_Out" $@ if ( $DEBUG_sys ) ; then echo "IGCM_sys_Put_Out :" $@ fi if [ $DRYRUN = 0 ]; then if [ -f ${1} ] ; then if [ ! -d $( dirname $2 ) ] ; then IGCM_sys_MkdirArchive $( dirname $2 ) fi else echo "WARNING : IGCM_sys_Put_Out ${1} DOES NOT EXIST ." IGCM_debug_PopStack "IGCM_sys_Put_Out" return 1 fi typeset RET # IGCM_sys_Chmod 444 ${1} # echo ${RSYNC} ${RSYNC_opt} $1 $2 > out_rsync 2>&1 ${RSYNC} ${RSYNC_opt} $1 $2 >> out_rsync 2>&1 RET=$? IGCM_sys_Rsync_out $RET ${libIGCM}/libIGCM_sys/IGCM_analyse_rsync_out.awk out_rsync (( RET=RET+$? )) if [ ${RET} -gt 0 ] ; then echo "IGCM_sys_Put_Out : error." cat out_rsync IGCM_debug_Exit "IGCM_sys_Put_Out" fi else ( ${DEBUG_debug} ) && echo "DRYRUN mode = " $DRYRUN >> stack fi IGCM_debug_PopStack "IGCM_sys_Put_Out" return 0 } #D-#================================================== #D-function IGCM_sys_Get #D-* Purpose: Get a file from ${ARCHIVE} #D-* Examples: IGCM_sys_Get myfile /destpath/myfile_with_PREFIX #D- IGCM_sys_Get /l Array_contain_myfiles /destpath/ function IGCM_sys_Get { IGCM_debug_PushStack "IGCM_sys_Get" $@ typeset DEST RET dm_liste ifile target if ( $DEBUG_sys ) ; then echo "IGCM_sys_Get :" $@ fi if [ $DRYRUN -le 2 ]; then if [ X${1} = X'/l' ] ; then # test if the first file is present in the old computation : eval set +A dm_liste \${${2}} else dm_liste=${1} fi eval DEST=\${${#}} # test if the (first) file is present in the old computation : IGCM_sys_TestFileArchive ${dm_liste[0]} RET=$? if [ ${RET} -gt 0 ] ; then echo "IGCM_sys_Get, ERROR : regular file ${dm_liste[0]} DOES NOT EXIST ." IGCM_debug_Exit "IGCM_sys_Get" return fi (( RET=0 )) for target in ${dm_liste[*]} ; do ln -s ${target} ${DEST} >> out_rsync 2>&1 (( RET=RET+$? )) done # echo ${RSYNC} ${RSYNC_opt} $@ > out_rsync 2>&1 # ${RSYNC} ${RSYNC_opt} $@ >> out_rsync 2>&1 # RET=$? # IGCM_sys_Rsync_out $RET # ${libIGCM}/libIGCM_sys/IGCM_analyse_rsync_out.awk out_rsync # (( RET=RET+$? )) if [ ${RET} -gt 0 ] ; then echo "IGCM_sys_Get : copy error." cat out_rsync IGCM_debug_Exit "IGCM_sys_Get" fi else ( ${DEBUG_debug} ) && echo "DRYRUN mode = " $DRYRUN >> stack fi IGCM_debug_PopStack "IGCM_sys_Get" } #D-#================================================== #D-function IGCM_sys_Put_Dods #D-* Purpose: DO NOTHING ! Put $(ARCHIVE) files on DODS internet protocole. #D-* Examples: #D- function IGCM_sys_Put_Dods { IGCM_debug_PushStack "IGCM_sys_Put_Dods" $@ if ( $DEBUG_sys ) ; then echo "IGCM_sys_Put_Dods :" $@ fi if [ $DRYRUN = 0 ]; then if [ ! -f ${1} ] ; then echo "WARNING : IGCM_sys_Put_Dods ${1} DOES NOT EXIST ." IGCM_debug_PopStack "IGCM_sys_Put_Dods" return fi #DO NOTHING else IGCM_err "DRYRUN mode = " $DRYRUN fi IGCM_debug_PopStack "IGCM_sys_Put_Dods" } ############################################################## A REVOIR !! #D-#================================================== #D-function IGCM_sys_Rapatrie #D-* Purpose: Rapatrie #D-* Examples: #D- function IGCM_sys_Rapatrie { IGCM_debug_PushStack "IGCM_sys_Rapatrie" $@ if ( $DEBUG_sys ) ; then echo "IGCM_sys_Rapatrie :" $@ fi typeset RET=0 IGCM_sys_Get ${R_STOCKAGE}/$2 $1 ; let $(( RET=RET+$? )) IGCM_sys_Cd $1 ; let $(( RET=RET+$? )) IGCM_sys_UnTar $2 ; let $(( RET=RET+$? )) if [ ${RET} -gt 0 ] ; then echo "IGCM_sys_Rapatrie : erreur." IGCM_debug_Exit "IGCM_sys_Rapatrie" fi IGCM_debug_PopStack "IGCM_sys_Rapatrie" } ############################################################## A FINIR !! #D-#================================================== #D-function IGCM_sys_GetDate_FichWork #D-* Purpose: donne la date filesys d'un fichier sur le filesystem WORK #D-* Examples: #D- function IGCM_sys_GetDate_FichWork { IGCM_debug_PushStack "IGCM_sys_FichWork" $@ if ( $DEBUG_sys ) ; then echo "IGCM_sys_GetDate_FichWork :" $@ fi # donne la date filesys d'un fichier sur la machine work IGCM_debug_PopStack "IGCM_sys_FichWork" } #D-#================================================== #D-function IGCM_sys_GetDate_FichArchive #D-* Purpose: donne la date filesys d'un fichier sur le filesystem ARCHIVE #D-* Examples: #D- function IGCM_sys_GetDate_FichArchive { IGCM_debug_PushStack "IGCM_sys_FichArchive" $@ if ( $DEBUG_sys ) ; then echo "IGCM_sys_GetDate_FichArchive :" $@ fi IGCM_debug_PopStack "IGCM_sys_FichArchive" } ############################################################## # REBUILD OPERATOR function IGCM_sys_rebuild { IGCM_debug_PushStack "IGCM_sys_rebuild" -- $@ if ( $DEBUG_sys ) ; then echo "IGCM_sys_rebuild :" $@ fi /home/mmaipsl/TEMP_LOCAL/PARALLEL/modipsl/bin/rebuild -f -o $@ if [ $? -gt 0 ] ; then echo "IGCM_sys_rebuild : erreur ${@}." IGCM_debug_Exit "rebuild" fi IGCM_debug_PopStack "IGCM_sys_rebuild" } ############################################################## # NCO OPERATOR function IGCM_sys_ncap { IGCM_debug_PushStack "IGCM_sys_ncap" -- $@ if ( $DEBUG_sys ) ; then echo "IGCM_sys_ncap :" $@ fi /usr/local/bin/ncap $@ if [ $? -gt 0 ] ; then echo "IGCM_sys_ncap : erreur ${@}." # IGCM_debug_Exit "ncap" fi IGCM_debug_PopStack "IGCM_sys_ncap" } ncatted=/usr/local/bin/ncatted # Problem with ksh and string passed in this function to ncatted ! # function IGCM_sys_ncatted { # IGCM_debug_PushStack "IGCM_sys_ncatted" -- $@ # if ( $DEBUG_sys ) ; then # echo "IGCM_sys_ncatted :" $@ # fi # /usr/local/bin/ncatted $@ # if [ $? -gt 0 ] ; then # echo "IGCM_sys_ncatted : erreur ${@}." # IGCM_debug_Exit "ncatted" # fi # IGCM_debug_PopStack "IGCM_sys_ncatted" # } function IGCM_sys_ncbo { IGCM_debug_PushStack "IGCM_sys_ncbo" -- $@ if ( $DEBUG_sys ) ; then echo "IGCM_sys_ncbo :" $@ fi /usr/local/bin/ncbo $@ if [ $? -gt 0 ] ; then echo "IGCM_sys_ncbo : erreur ${@}." # IGCM_debug_Exit "ncbo" fi IGCM_debug_PopStack "IGCM_sys_ncbo" } function IGCM_sys_ncdiff { IGCM_debug_PushStack "IGCM_sys_ncdiff" -- $@ if ( $DEBUG_sys ) ; then echo "IGCM_sys_ncdiff :" $@ fi /usr/local/bin/ncdiff $@ if [ $? -gt 0 ] ; then echo "IGCM_sys_ncdiff : erreur ${@}." # IGCM_debug_Exit "ncdiff" fi IGCM_debug_PopStack "IGCM_sys_ncdiff" } function IGCM_sys_ncea { IGCM_debug_PushStack "IGCM_sys_ncea" -- $@ if ( $DEBUG_sys ) ; then echo "IGCM_sys_ncea :" $@ fi /usr/local/bin/ncea $@ if [ $? -gt 0 ] ; then echo "IGCM_sys_ncea : erreur ${@}." # IGCM_debug_Exit "ncea" fi IGCM_debug_PopStack "IGCM_sys_ncea" } function IGCM_sys_ncecat { IGCM_debug_PushStack "IGCM_sys_ncecat" -- $@ if ( $DEBUG_sys ) ; then echo "IGCM_sys_ncecat :" $@ fi /usr/local/bin/ncecat $@ if [ $? -gt 0 ] ; then echo "IGCM_sys_ncecat : erreur ${@}." # IGCM_debug_Exit "ncecat" fi IGCM_debug_PopStack "IGCM_sys_ncecat" } function IGCM_sys_ncflint { IGCM_debug_PushStack "IGCM_sys_ncflint" -- $@ if ( $DEBUG_sys ) ; then echo "IGCM_sys_ncflint :" $@ fi /usr/local/bin/ncflint $@ if [ $? -gt 0 ] ; then echo "IGCM_sys_ncflint : erreur ${@}." # IGCM_debug_Exit "ncflint" fi IGCM_debug_PopStack "IGCM_sys_ncflint" } function IGCM_sys_ncks { IGCM_debug_PushStack "IGCM_sys_ncks" -- $@ if ( $DEBUG_sys ) ; then echo "IGCM_sys_ncks :" $@ fi /usr/local/bin/ncks $@ if [ $? -gt 0 ] ; then echo "IGCM_sys_ncks : erreur ${@}." # IGCM_debug_Exit "ncks" fi IGCM_debug_PopStack "IGCM_sys_ncks" } function IGCM_sys_ncpdq { IGCM_debug_PushStack "IGCM_sys_ncpdq" -- $@ if ( $DEBUG_sys ) ; then echo "IGCM_sys_ncpdq :" $@ fi /usr/local/bin/ncpdq $@ if [ $? -gt 0 ] ; then echo "IGCM_sys_ncpdq : erreur ${@}." # IGCM_debug_Exit "ncpdq" fi IGCM_debug_PopStack "IGCM_sys_ncpdq" } function IGCM_sys_ncra { IGCM_debug_PushStack "IGCM_sys_ncra" -- $@ if ( $DEBUG_sys ) ; then echo "IGCM_sys_ncra :" $@ fi /usr/local/bin/ncra $@ if [ $? -gt 0 ] ; then echo "IGCM_sys_ncra : erreur ${@}." # IGCM_debug_Exit "ncra" fi IGCM_debug_PopStack "IGCM_sys_ncra" } function IGCM_sys_ncrcat { IGCM_debug_PushStack "IGCM_sys_ncrcat" -- $@ if ( $DEBUG_sys ) ; then echo "IGCM_sys_ncrcat :" $@ fi /usr/local/bin/ncrcat $@ if [ $? -gt 0 ] ; then echo "IGCM_sys_ncrcat : erreur ${@}." # IGCM_debug_Exit "ncrcat" fi IGCM_debug_PopStack "IGCM_sys_ncrcat" } function IGCM_sys_ncrename { IGCM_debug_PushStack "IGCM_sys_ncrename" -- $@ if ( $DEBUG_sys ) ; then echo "IGCM_sys_ncrename :" $@ fi /usr/local/bin/ncrename $@ if [ $? -gt 0 ] ; then echo "IGCM_sys_ncrename : erreur ${@}." # IGCM_debug_Exit "ncrename" fi IGCM_debug_PopStack "IGCM_sys_ncrename" } function IGCM_sys_ncwa { IGCM_debug_PushStack "IGCM_sys_ncwa" -- $@ if ( $DEBUG_sys ) ; then echo "IGCM_sys_ncwa :" $@ fi /usr/local/bin/ncwa $@ if [ $? -gt 0 ] ; then echo "IGCM_sys_ncwa : erreur ${@}." # IGCM_debug_Exit "ncwa" fi IGCM_debug_PopStack "IGCM_sys_ncwa" } ############################################################ # Activate Running Environnment Variables function IGCM_sys_activ_variables { IGCM_debug_PushStack "IGCM_sys_activ_variables" if ( $DEBUG_sys ) ; then echo "IGCM_sys_activ_variables" fi IGCM_debug_PopStack "IGCM_sys_activ_variables" } ############################################################ # Desactivate Running Environnment Variables function IGCM_sys_desactiv_variables { IGCM_debug_PushStack "IGCM_sys_desactiv_variables" if ( $DEBUG_sys ) ; then echo "IGCM_sys_desactiv_variables " fi IGCM_debug_PopStack "IGCM_sys_desactiv_variables " } ############################################################ # Build run file function IGCM_sys_build_run_file { IGCM_debug_PushStack "IGCM_sys_build_run_file" if ( $DEBUG_sys ) ; then echo "IGCM_sys_build_run_file " fi IGCM_debug_PopStack "IGCM_sys_build_run_file " }