[622] | 1 | #!/bin/ksh |
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| 2 | |
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| 3 | #************************************************************** |
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| 4 | # Author: Sebastien Denvil, Martial Mancip, Arnaud Caubel |
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| 5 | # Contact: Arnaud.Caubel__at__lsce.ipsl.fr |
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| 6 | # $Revision:: $ Revision of last commit |
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| 7 | # $Author:: $ Author of last commit |
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| 8 | # $Date:: $ Date of last commit |
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| 9 | # IPSL (2006) |
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| 10 | # This software is governed by the CeCILL licence see libIGCM/libIGCM_CeCILL.LIC |
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| 11 | # |
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| 12 | #************************************************************** |
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| 13 | |
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| 14 | #========================================================= |
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| 15 | # The documentation of this file can be automatically generated |
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[623] | 16 | # if you use the prefix #D- for comments to be extracted. |
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[622] | 17 | # Extract with command: cat lib* | grep "^#D-" | cut -c "4-" |
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| 18 | #========================================================= |
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| 19 | |
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| 20 | #D-#================================================== |
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[623] | 21 | #D-LibIGCM_sys for Curie |
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[622] | 22 | #D-#================================================== |
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| 23 | #D- |
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[623] | 24 | #D- This ksh library if a layer under some usefull |
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[622] | 25 | #D-environment variables and shell commands. |
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| 26 | #D-All those definitions depend on host particularities. |
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| 27 | #D-It manages a stack mechanism and test validity of operations. |
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| 28 | #D-All function described bellow must be prefixed by IGCM_sys. |
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| 29 | |
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| 30 | #==================================================== |
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| 31 | # libIGCM_sys PARAMETERS |
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| 32 | #==================================================== |
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| 33 | |
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| 34 | #==================================================== |
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| 35 | # set DEBUG_sys to true to output calls of function |
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| 36 | typeset -r DEBUG_sys=${DEBUG_sys:=true} |
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| 37 | |
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| 38 | #==================================================== |
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| 39 | # Turn in dry run mode ? (sys_Put_Rest, sys_Put_Out, sys_Get) |
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| 40 | typeset -r DRYRUN=${DRYRUN:=0} |
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| 41 | |
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| 42 | # YOU MUST COMPILE YOUR EXE FILES FOR DRYRUN MODE ! |
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| 43 | # ------------------------------------------------------------------------------------- |
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| 44 | # | DRYRUN= | Date computations, | sys_Get | Exe | sys_Put_Out; sys_Put_Rest | |
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[809] | 45 | # | | Cp/Exe/param/files | | | | |
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| 46 | # | | Chmod Qsub | | | | |
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[622] | 47 | # ------------------------------------------------------------------------------------- |
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| 48 | # | 0 | yes | yes | yes | yes | |
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| 49 | # ------------------------------------------------------------------------------------- |
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| 50 | # | 1 | yes | yes | yes | no | |
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| 51 | # ------------------------------------------------------------------------------------- |
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| 52 | # | 2 | yes | yes | no | no | |
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| 53 | # ------------------------------------------------------------------------------------- |
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| 54 | # | 3 | yes | no | no | no | |
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| 55 | # ------------------------------------------------------------------------------------- |
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| 56 | |
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| 57 | #===================================================== |
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| 58 | # Global Variables : |
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| 59 | #===================================================== |
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| 60 | # Language : "fr" or "en" |
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| 61 | typeset -r MYLANG="fr" |
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| 62 | |
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| 63 | #===================================================== |
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| 64 | # Host and user names |
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| 65 | # $hostname ou hostname |
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| 66 | typeset HOST=${HOST:=$( hostname )} |
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| 67 | # $username ou whoami |
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| 68 | typeset LOGIN=${LOGIN:=$( whoami )} |
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| 69 | # $hostname of the MASTER job |
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| 70 | typeset MASTER=curie |
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[880] | 71 | # add default project on curie |
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[900] | 72 | typeset DEFAULT_PROJECT=gen0826 |
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[622] | 73 | |
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| 74 | #D- |
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| 75 | #D-#================================================== |
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| 76 | #D-Program used in libIGCM |
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| 77 | #D-#================================================== |
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| 78 | |
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[742] | 79 | # Submit command |
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[747] | 80 | typeset SUBMIT=${SUBMIT:=ccc_msub} |
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[622] | 81 | # rsync with path |
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| 82 | typeset -r RSYNC=/usr/bin/rsync |
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| 83 | # RSYNC_opt args to rsync |
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| 84 | typeset -r RSYNC_opt="-va" |
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| 85 | # ie storage filesystem |
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[623] | 86 | typeset -r STOREHOST=${MASTER} |
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[622] | 87 | |
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| 88 | #==================================================== |
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| 89 | # Source default environment |
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| 90 | #==================================================== |
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| 91 | ##. /etc/profile |
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| 92 | |
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| 93 | #==================================================== |
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| 94 | # Set environment tools (ferret, nco, cdo) |
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| 95 | #==================================================== |
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[996] | 96 | if [ X${TaskType} = Xcomputing ] ; then |
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| 97 | . /ccc/cont003/home/dsm/p86ipsl/.atlas_env_netcdf4_curie_ksh > /dev/null 2>&1 |
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| 98 | # to run with netcdf 3.6.3 ie compilation done before 17/2/2014 |
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| 99 | # uncomment 2 lines : |
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| 100 | # module unload netcdf |
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| 101 | # module load netcdf/3.6.3 |
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| 102 | export PATH=${PATH}:/ccc/cont003/home/dsm/p86ipsl/AddNoise/src_X64_CURIE/bin |
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[1026] | 103 | export PATH=${PATH}:/ccc/cont003/home/dsm/p86ipsl/AddPerturbation/src_X64_CURIE/bin |
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[996] | 104 | else |
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| 105 | . /ccc/cont003/home/dsm/p86ipsl/.atlas_env_netcdf4_curie_ksh > /dev/null 2>&1 |
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| 106 | fi |
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[622] | 107 | |
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| 108 | #==================================================== |
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| 109 | # Specific for ocean additionnal diagnostic |
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| 110 | export FER_GO="$FER_GO /home/cont003/p86denv/IGCM_POST_UTIL/JNL /home/cont003/p86denv/GRAF /home/cont003/p86denv/GRAF/GO" |
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| 111 | export FER_PALETTE="$FER_PALETTE /home/cont003/p86denv/GRAF/PALET" |
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| 112 | |
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| 113 | #==================================================== |
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| 114 | # Host specific DIRECTORIES |
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| 115 | #==================================================== |
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| 116 | |
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[623] | 117 | # ============ CESIUM START ============ # |
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| 118 | |
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[622] | 119 | #==================================================== |
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[623] | 120 | #- Mirror libIGCM from titane to cesium if needed |
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| 121 | #ROOTSYS=$( echo ${libIGCM} | gawk -F"/" '{print $3}' ) |
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| 122 | #if [ ! ${ROOTSYS} = "home" ] ; then |
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| 123 | # typeset -r MirrorlibIGCM=${MirrorlibIGCM:=true} |
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| 124 | #else |
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| 125 | # typeset -r MirrorlibIGCM=${MirrorlibIGCM:=false} |
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| 126 | #fi |
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| 127 | |
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| 128 | #==================================================== |
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| 129 | #- libIGCM_POST |
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| 130 | #if ( ${MirrorlibIGCM} ) ; then |
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| 131 | # PATHlibIGCM=$( echo ${libIGCM} | gawk -F"${LOGIN}/" '{print $2}' | sed -e "s&/libIGCM&&" ) |
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| 132 | # typeset -r libIGCM_POST=${HOME}/MIRROR/${PATHlibIGCM}/libIGCM |
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| 133 | #else |
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| 134 | # typeset -r libIGCM_POST=${libIGCM} |
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| 135 | #fi |
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| 136 | |
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| 137 | # ============ CESIUM END ============ # |
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| 138 | |
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| 139 | #==================================================== |
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| 140 | #- MirrorlibIGCM for frontend |
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| 141 | typeset -r MirrorlibIGCM=${MirrorlibIGCM:=false} |
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| 142 | |
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| 143 | #==================================================== |
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| 144 | #- libIGCM_POST for frontend |
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| 145 | typeset -r libIGCM_POST=${libIGCM} |
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| 146 | |
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| 147 | #==================================================== |
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[622] | 148 | #- R_EXE (==> BIN_DIR = ${MODIPSL}/bin ) |
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| 149 | typeset -r R_EXE="${MODIPSL}/bin" |
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| 150 | |
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| 151 | #==================================================== |
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| 152 | #- SUBMIT_DIR : submission dir |
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[1010] | 153 | typeset -x SUBMIT_DIR=${SUBMIT_DIR:=${BRIDGE_MSUB_PWD}} |
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[622] | 154 | |
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| 155 | #==================================================== |
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| 156 | #- IN |
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| 157 | typeset -r R_IN=${R_IN:=/ccc/work/cont003/dsm/p86ipsl/IGCM} |
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| 158 | typeset -r R_IN_ECMWF=${R_IN_ECMWF:=/ccc/work/cont003/dsm/p24data} |
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| 159 | |
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| 160 | #==================================================== |
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| 161 | #- RUN_DIR_PATH : Temporary working directory (=> TMP) |
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[850] | 162 | typeset -r RUN_DIR_PATH=${RUN_DIR_PATH:=${SCRATCHDIR}/RUN_DIR/${BRIDGE_MSUB_JOBID}_${$}} |
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[1134] | 163 | # Due to a workaround at IDRIS. /tmp is not functionning correctly there. |
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| 164 | IGCM_sys_MkdirWork ${RUN_DIR_PATH} |
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[622] | 165 | |
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| 166 | #==================================================== |
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| 167 | #- HOST_MPIRUN_COMMAND |
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[808] | 168 | typeset -r HOST_MPIRUN_COMMAND=${HOST_MPIRUN_COMMAND:="/usr/bin/time ccc_mprun -E-K1"} |
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[622] | 169 | |
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| 170 | #==================================================== |
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| 171 | #- Max number of arguments passed to nco operator or demigration command |
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| 172 | UNIX_MAX_LIMIT=360 |
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| 173 | |
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[623] | 174 | #==================================================== |
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| 175 | #- set PackDefault true on curie |
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| 176 | PackDefault=true |
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| 177 | |
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[664] | 178 | #==================================================== |
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| 179 | #- Number of core per node (max number of OpenMP task) |
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[622] | 180 | NUM_COREPERNODE=8 |
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| 181 | |
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[623] | 182 | #==================================================== |
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| 183 | #- Default number of MPI task for IPSL coupled model |
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| 184 | #- required for backward compatibility |
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| 185 | #- |
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| 186 | DEFAULT_NUM_PROC_OCE=5 |
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| 187 | DEFAULT_NUM_PROC_CPL=1 |
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[637] | 188 | (( DEFAULT_NUM_PROC_ATM = BATCH_NUM_PROC_TOT - DEFAULT_NUM_PROC_OCE - DEFAULT_NUM_PROC_CPL )) |
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| 189 | DEFAULT_NUM_PROC_TOTAL=${BATCH_NUM_PROC_TOT} |
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[623] | 190 | |
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[725] | 191 | #D-#================================================== |
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[1057] | 192 | #D-function IGCM_sys_defineArchives |
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| 193 | #D-* Purpose: |
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| 194 | #D-* Define ARCHIVE : Dedicated to large files |
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| 195 | #D-* Define STORAGE : Dedicated to small/medium files |
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| 196 | #D-* Define R_OUT : Output tree located on ARCHIVE |
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| 197 | #D-* Define R_FIG : Output tree located on STORAGE hosting figures (monitoring and atlas, and/or small files) |
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| 198 | #D-* Define R_BUF : Output tree located on SCRATCHDIR hosting files waiting for rebuild or pack processes |
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| 199 | #D-* if SpaceName=TEST everything is stored on SCRATCHDIR |
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[725] | 200 | #D-* Examples: |
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| 201 | #D- |
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[1057] | 202 | function IGCM_sys_defineArchives { |
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| 203 | IGCM_debug_PushStack "IGCM_sys_defineArchives" |
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[676] | 204 | |
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[1060] | 205 | if [ ! X${config_UserChoices_ARCHIVE} = X ]; then |
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[1057] | 206 | #==================================================== |
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| 207 | #- ARCHIVE (dedicated to large files) |
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[1063] | 208 | ARCHIVE=${config_UserChoices_ARCHIVE} |
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[1057] | 209 | else |
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| 210 | #==================================================== |
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| 211 | #- ARCHIVE (dedicated to large files) |
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[1063] | 212 | ARCHIVE=${CCCSTOREDIR} |
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[1057] | 213 | fi |
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[725] | 214 | |
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[1060] | 215 | if [ ! X${config_UserChoices_STORAGE} = X ]; then |
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[1057] | 216 | #==================================================== |
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| 217 | #- STORAGE (dedicated to small/medium files) |
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[1063] | 218 | STORAGE=${config_UserChoices_STORAGE} |
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[1057] | 219 | else |
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| 220 | #==================================================== |
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| 221 | #- STORAGE (dedicated to small/medium files) |
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[1063] | 222 | STORAGE=${CCCWORKDIR} |
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[1057] | 223 | fi |
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[725] | 224 | |
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[1057] | 225 | if [ X${config_UserChoices_SpaceName} = XTEST ]; then |
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| 226 | #==================================================== |
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| 227 | #- R_OUT |
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[1063] | 228 | R_OUT=${SCRATCHDIR}/IGCM_OUT |
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[1057] | 229 | |
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| 230 | #==================================================== |
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| 231 | #- R_FIG (hosting figures : monitoring and atlas, and/or small files) |
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[1063] | 232 | R_FIG=${SCRATCHDIR}/IGCM_OUT |
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[1057] | 233 | |
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| 234 | IGCM_debug_Print 1 "SpaceName=TEST ==> OVERRULE destination path directories" |
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| 235 | |
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| 236 | else |
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| 237 | #==================================================== |
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| 238 | #- R_OUT |
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[1063] | 239 | R_OUT=${ARCHIVE}/IGCM_OUT |
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[1057] | 240 | |
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| 241 | #==================================================== |
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| 242 | #- R_FIG (hosting figures : monitoring and atlas, and/or small files) |
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[1063] | 243 | R_FIG=${STORAGE}/IGCM_OUT |
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[1057] | 244 | fi |
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| 245 | |
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| 246 | #==================================================== |
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| 247 | #- R_BUF (ONLY FOR double copy an scratch) |
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[1063] | 248 | R_BUF=${SCRATCHDIR}/IGCM_OUT |
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[1057] | 249 | |
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| 250 | IGCM_debug_Print 1 "R_OUT has been defined = ${R_OUT}" |
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| 251 | IGCM_debug_Print 1 "R_BUF has been defined = ${R_BUF}" |
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| 252 | IGCM_debug_Print 1 "R_FIG has been defined = ${R_FIG}" |
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| 253 | |
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| 254 | IGCM_debug_PopStack "IGCM_sys_defineArchives" |
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[725] | 255 | } |
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| 256 | |
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[622] | 257 | #D-#================================================== |
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| 258 | #D-function IGCM_sys_RshMaster |
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[623] | 259 | #D-* Purpose: Connection to frontend machine. |
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[622] | 260 | #D-* Examples: |
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| 261 | #D- |
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| 262 | function IGCM_sys_RshMaster { |
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[623] | 263 | IGCM_debug_PushStack "IGCM_sys_RshMaster" $@ |
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| 264 | /bin/ksh <<-EOF |
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[622] | 265 | export libIGCM=${libIGCM} |
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| 266 | export DEBUG_debug=${DEBUG_debug} |
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| 267 | . ${libIGCM}/libIGCM_debug/libIGCM_debug.ksh |
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| 268 | . ${libIGCM}/libIGCM_card/libIGCM_card.ksh |
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| 269 | ${@} |
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| 270 | EOF |
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[623] | 271 | if [ $? -gt 0 ] ; then |
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| 272 | echo "IGCM_sys_RshMaster : erreur." |
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| 273 | IGCM_debug_Exit "IGCM_sys_RshMaster" |
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| 274 | fi |
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| 275 | IGCM_debug_PopStack "IGCM_sys_RshMaster" |
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[622] | 276 | } |
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| 277 | |
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| 278 | #D-#================================================== |
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| 279 | #D-function IGCM_sys_RshArchive |
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| 280 | #D-* Purpose: Archive rsh command |
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| 281 | #D-* Examples: |
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| 282 | #D- |
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| 283 | function IGCM_sys_RshArchive { |
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[623] | 284 | IGCM_debug_PushStack "IGCM_sys_RshArchive" $@ |
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| 285 | /bin/ksh <<-EOF |
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[622] | 286 | ${@} |
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| 287 | EOF |
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[811] | 288 | status=$? |
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| 289 | if [ ${status} -gt 0 ] ; then |
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| 290 | IGCM_debug_Print 2 "IGCM_sys_RshArchive : command failed error code ${status}" |
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[623] | 291 | IGCM_debug_Exit "IGCM_sys_RshArchive" |
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| 292 | fi |
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| 293 | IGCM_debug_PopStack "IGCM_sys_RshArchive" |
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[622] | 294 | } |
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| 295 | |
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| 296 | #D-#================================================== |
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[845] | 297 | #D-function IGCM_sys_RshArchive_NoError |
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| 298 | #D-* Purpose: Archive rsh command, without error |
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| 299 | #D-* used only in monitoring.job |
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| 300 | #D-* Examples: |
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| 301 | #D- |
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| 302 | function IGCM_sys_RshArchive_NoError { |
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| 303 | IGCM_debug_PushStack "IGCM_sys_RshArchive_NoError" $@ |
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| 304 | /bin/ksh <<-EOF |
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| 305 | ${@} 2> \dev\null |
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| 306 | EOF |
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| 307 | IGCM_debug_PopStack "IGCM_sys_RshArchive_NoError" |
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| 308 | } |
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| 309 | |
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| 310 | #D-#================================================== |
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[622] | 311 | #D-function IGCM_sys_RshPost |
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| 312 | #D-* Purpose: Post-process rsh command |
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| 313 | #D-* Examples: |
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| 314 | #D- |
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| 315 | function IGCM_sys_RshPost { |
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[623] | 316 | IGCM_debug_PushStack "IGCM_sys_RshPost" $@ |
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| 317 | if ( $DEBUG_sys ) ; then |
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| 318 | echo "IGCM_sys_RshPost :" $@ |
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| 319 | fi |
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| 320 | # keep standard input (stdin) for the loop onto temporary file |
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[811] | 321 | cat >/tmp/tmp_IGCM_sys_RshPost_$$_${LOGNAME} |
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[623] | 322 | |
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[811] | 323 | /bin/ksh </tmp/tmp_IGCM_sys_RshPost_$$_${LOGNAME} |
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[623] | 324 | if [ $? -gt 0 ] ; then |
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| 325 | echo "IGCM_sys_RshPost : erreur." |
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| 326 | IGCM_debug_Exit "IGCM_sys_RshPost" |
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| 327 | fi |
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| 328 | # delete temporary file |
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[811] | 329 | \rm /tmp/tmp_IGCM_sys_RshPost_$$_${LOGNAME} |
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[623] | 330 | |
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| 331 | # ============ FRONTEND END ============ # |
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| 332 | |
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| 333 | # ============ CESIUM START ============ # |
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| 334 | # typeset NB_ESSAI DELAI status i |
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| 335 | # if [ "X$( grep rebuild_from tmp_IGCM_sys_RshPost_$$ )" != "X" ] ; then |
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| 336 | # #little hack so that rebuild submission is done on titane not an cesium |
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| 337 | # |
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| 338 | # libIGCM_POST_sed=$( echo $libIGCM_POST | sed 's/\//\\\//g' ) |
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| 339 | # POST_DIR_sed=$( echo ${POST_DIR} | sed 's/\//\\\//g' ) |
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| 340 | # sed "s/IGCM_sys_QsubPost/IGCM_sys_Qsub/g" tmp_IGCM_sys_RshPost_$$ > tmp.txt |
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| 341 | # sed "s/ rebuild_fromWorkdir/ ${libIGCM_POST_sed}\/rebuild_fromWorkdir.job/g" tmp.txt > tmp_IGCM_sys_RshPost_$$ |
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| 342 | # sed "s/ rebuild_fromArchive/ ${libIGCM_POST_sed}\/rebuild_fromArchive.job/g" tmp_IGCM_sys_RshPost_$$ > tmp.txt |
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| 343 | # sed "s/Script_Post_Output=/Script_Output=${POST_DIR_sed}\//g" tmp.txt > tmp_IGCM_sys_RshPost_$$ |
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| 344 | # \mv tmp.txt tmp_IGCM_sys_RshPost_$$ |
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| 345 | # |
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| 346 | # echo cat tmp_IGCM_sys_RshPost_$$ AFTER |
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| 347 | # cat tmp_IGCM_sys_RshPost_$$ |
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| 348 | # |
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| 349 | # /bin/ksh <tmp_IGCM_sys_RshPost_$$ |
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| 350 | # if [ $? -gt 0 ] ; then |
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| 351 | # echo "IGCM_sys_RshPost : erreur." |
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| 352 | # IGCM_debug_Exit "IGCM_sys_RshPost" |
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| 353 | # fi |
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| 354 | # # delete temporary file |
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| 355 | # \rm tmp_IGCM_sys_RshPost_$$ |
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| 356 | # |
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| 357 | # else |
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| 358 | # # number of tentative |
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| 359 | # NB_ESSAI=10 |
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| 360 | # # time delay between tentative |
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| 361 | # DELAI=10 |
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| 362 | # i=0 |
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| 363 | # while [ $i -ne $NB_ESSAI ] ; do |
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| 364 | # ssh -t titane996 ssh cesium /bin/ksh <tmp_IGCM_sys_RshPost_$$ |
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| 365 | # status=$? |
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| 366 | # if [ ${status} -ne 0 ]; |
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| 367 | # then |
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[785] | 368 | # sleep $DELAI |
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[623] | 369 | # else |
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[785] | 370 | # break |
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[623] | 371 | # fi |
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| 372 | # let i=$i+1 |
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| 373 | # done |
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| 374 | # # delete temporary file |
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| 375 | # \rm tmp_IGCM_sys_RshPost_$$ |
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| 376 | # |
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| 377 | # if [ ${status} -gt 0 ] ; then |
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| 378 | # echo "IGCM_sys_RshPost : erreur." |
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| 379 | # IGCM_debug_Exit "IGCM_sys_RshPost" |
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| 380 | # fi |
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| 381 | # fi |
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| 382 | |
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| 383 | # ============ CESIUM END ============ # |
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| 384 | |
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| 385 | IGCM_debug_PopStack "IGCM_sys_RshPost" |
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[622] | 386 | } |
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| 387 | |
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| 388 | #D-#================================================== |
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| 389 | #D-function IGCM_sys_SendMail |
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| 390 | #D-* Purpose: Send mail when simulation is over |
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| 391 | #D-* Examples: |
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| 392 | #D- |
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| 393 | function IGCM_sys_SendMail { |
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[623] | 394 | IGCM_debug_PushStack "IGCM_sys_SendMail" $@ |
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[922] | 395 | |
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[623] | 396 | if ( $DEBUG_sys ) ; then |
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| 397 | echo "IGCM_sys_SendMail :" $@ |
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| 398 | fi |
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[622] | 399 | |
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[922] | 400 | if [ X${1} = XAccounting ] ; then |
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| 401 | status=Accounting |
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| 402 | mailText=jobAccounting.mail |
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| 403 | elif ( ${ExitFlag} ) ; then |
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[623] | 404 | status=failed |
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[922] | 405 | mailText=jobEnd.mail |
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[623] | 406 | else |
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| 407 | status=completed |
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[922] | 408 | mailText=jobEnd.mail |
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[623] | 409 | fi |
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[622] | 410 | |
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[922] | 411 | # Update selected mail template |
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| 412 | while read -r line; do |
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| 413 | eval echo $line >> mail.txt ; |
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| 414 | done < ${libIGCM}/libIGCM_sys/${mailText} |
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[622] | 415 | |
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[806] | 416 | if [ ! -z ${config_UserChoices_MailName} ] ; then |
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[922] | 417 | mail -s "${config_UserChoices_JobName} ${status}" ${config_UserChoices_MailName} < mail.txt |
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[806] | 418 | elif [ -f ~/.forward ] ; then |
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[922] | 419 | mail -s "${config_UserChoices_JobName} ${status}" $( cat ~/.forward ) < mail.txt |
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[806] | 420 | fi |
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[811] | 421 | |
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[806] | 422 | sleep 10 |
---|
[922] | 423 | rm -f mail.txt |
---|
[811] | 424 | |
---|
[623] | 425 | IGCM_debug_PopStack "IGCM_sys_SendMail" |
---|
[622] | 426 | } |
---|
| 427 | |
---|
| 428 | #D-#================================================== |
---|
| 429 | #D-function IGCM_sys_Mkdir |
---|
| 430 | #D-* Purpose: Master locale mkdir command |
---|
| 431 | #D-* Examples: |
---|
| 432 | #D- |
---|
| 433 | function IGCM_sys_Mkdir { |
---|
[623] | 434 | IGCM_debug_PushStack "IGCM_sys_Mkdir" $@ |
---|
| 435 | if ( $DEBUG_sys ) ; then |
---|
| 436 | echo "IGCM_sys_Mkdir :" $@ |
---|
| 437 | fi |
---|
| 438 | if [ ! -d ${1} ]; then |
---|
| 439 | \mkdir -p $1 |
---|
| 440 | if [ $? -gt 0 ] ; then |
---|
| 441 | echo "IGCM_sys_Mkdir : erreur." |
---|
| 442 | IGCM_debug_Exit "IGCM_sys_Mkdir" |
---|
[622] | 443 | fi |
---|
[623] | 444 | fi |
---|
| 445 | # vérification : |
---|
| 446 | if [ ! -d ${1} ] ; then |
---|
| 447 | echo "IGCM_sys_Mkdir : erreur." |
---|
| 448 | IGCM_debug_Exit "IGCM_sys_Mkdir" |
---|
| 449 | fi |
---|
| 450 | IGCM_debug_PopStack "IGCM_sys_Mkdir" |
---|
[622] | 451 | } |
---|
| 452 | |
---|
| 453 | #D-#================================================== |
---|
| 454 | #D-function IGCM_sys_MkdirArchive |
---|
| 455 | #D-* Purpose: Mkdir on Archive |
---|
| 456 | #D-* Examples: |
---|
| 457 | #D- |
---|
| 458 | function IGCM_sys_MkdirArchive { |
---|
[623] | 459 | IGCM_debug_PushStack "IGCM_sys_MkdirArchive" $@ |
---|
| 460 | if ( $DEBUG_sys ) ; then |
---|
| 461 | echo "IGCM_sys_MkdirArchive :" $@ |
---|
| 462 | fi |
---|
| 463 | #- creation de repertoire sur le serveur fichier |
---|
| 464 | if [ ! -d ${1} ]; then |
---|
| 465 | \mkdir -p $1 |
---|
[811] | 466 | status=$? |
---|
| 467 | |
---|
| 468 | if [ ${status} -gt 0 ] ; then |
---|
| 469 | IGCM_debug_Print 2 "IGCM_sys_MkdirArchive : mkdir failed error code ${status}" |
---|
[623] | 470 | IGCM_debug_Exit "IGCM_sys_MkdirArchive" |
---|
[622] | 471 | fi |
---|
[623] | 472 | fi |
---|
| 473 | IGCM_debug_PopStack "IGCM_sys_MkdirArchive" |
---|
[622] | 474 | } |
---|
| 475 | |
---|
| 476 | #D-#================================================== |
---|
| 477 | #D-function IGCM_sys_MkdirWork |
---|
| 478 | #D-* Purpose: Mkdir on Work |
---|
| 479 | #D-* Examples: |
---|
| 480 | #D- |
---|
| 481 | function IGCM_sys_MkdirWork { |
---|
[623] | 482 | IGCM_debug_PushStack "IGCM_sys_MkdirWork" $@ |
---|
| 483 | if ( $DEBUG_sys ) ; then |
---|
| 484 | echo "IGCM_sys_MkdirWork :" $@ |
---|
| 485 | fi |
---|
| 486 | #- creation de repertoire sur le serveur fichier |
---|
| 487 | if [ ! -d ${1} ]; then |
---|
| 488 | \mkdir -p $1 |
---|
| 489 | if [ $? -gt 0 ] ; then |
---|
| 490 | echo "IGCM_sys_MkdirWork : erreur." |
---|
| 491 | IGCM_debug_Exit "IGCM_sys_MkdirWork" |
---|
[622] | 492 | fi |
---|
[623] | 493 | fi |
---|
| 494 | IGCM_debug_PopStack "IGCM_sys_MkdirWork" |
---|
[622] | 495 | } |
---|
| 496 | |
---|
| 497 | #D-#================================================== |
---|
| 498 | #D-function IGCM_sys_Cd |
---|
| 499 | #D-* Purpose: master cd command |
---|
| 500 | #D-* Examples: |
---|
| 501 | #D- |
---|
| 502 | function IGCM_sys_Cd { |
---|
[623] | 503 | IGCM_debug_PushStack "IGCM_sys_Cd" $@ |
---|
| 504 | if ( $DEBUG_sys ) ; then |
---|
| 505 | echo "IGCM_sys_Cd :" $@ |
---|
| 506 | fi |
---|
| 507 | \cd $1 |
---|
| 508 | if [ $? -gt 0 ] ; then |
---|
| 509 | echo "IGCM_sys_Cd : erreur." |
---|
| 510 | IGCM_debug_Exit "IGCM_sys_Cd" |
---|
| 511 | fi |
---|
| 512 | IGCM_debug_PopStack "IGCM_sys_Cd" |
---|
[622] | 513 | } |
---|
| 514 | |
---|
| 515 | #D-#================================================== |
---|
| 516 | #D-function IGCM_sys_Chmod |
---|
| 517 | #D-* Purpose: Chmod |
---|
| 518 | #D-* Examples: |
---|
| 519 | #D- |
---|
| 520 | function IGCM_sys_Chmod { |
---|
[1057] | 521 | IGCM_debug_PushStack "IGCM_sys_Chmod" $@ |
---|
[623] | 522 | if ( $DEBUG_sys ) ; then |
---|
| 523 | echo "IGCM_sys_Chmod :" $@ |
---|
| 524 | fi |
---|
[809] | 525 | \chmod $@ |
---|
| 526 | if [ $? -gt 0 ] ; then |
---|
| 527 | echo "IGCM_sys_Chmod : erreur." |
---|
| 528 | IGCM_debug_Exit "IGCM_sys_Chmod" |
---|
[623] | 529 | fi |
---|
| 530 | IGCM_debug_PopStack "IGCM_sys_Chmod" |
---|
[622] | 531 | } |
---|
| 532 | |
---|
| 533 | #D-#================================================== |
---|
| 534 | #D-function IGCM_sys_FileSize |
---|
| 535 | #D-* Purpose: Filesize |
---|
| 536 | #D-* Examples: |
---|
| 537 | #D- |
---|
| 538 | function IGCM_sys_FileSize { |
---|
[623] | 539 | IGCM_debug_PushStack "IGCM_sys_FileSize" $@ |
---|
[622] | 540 | |
---|
[623] | 541 | typeset sizeF |
---|
| 542 | set +A sizeF -- $( ls -la ${1} ) |
---|
| 543 | if [ $? -gt 0 ] ; then |
---|
| 544 | IGCM_debug_Exit "IGCM_sys_FileSize" |
---|
| 545 | fi |
---|
| 546 | eval ${2}=${sizeF[4]} |
---|
[622] | 547 | |
---|
[623] | 548 | IGCM_debug_PopStack "IGCM_sys_FileSize" |
---|
[622] | 549 | } |
---|
| 550 | |
---|
| 551 | #D-#================================================== |
---|
| 552 | #D-function IGCM_sys_TestDir |
---|
| 553 | #D-* Purpose: Test Directory that must exists |
---|
| 554 | #D-* Examples: |
---|
| 555 | #D- |
---|
| 556 | function IGCM_sys_TestDir { |
---|
[623] | 557 | IGCM_debug_PushStack "IGCM_sys_TestDir" $@ |
---|
| 558 | if ( $DEBUG_sys ) ; then |
---|
| 559 | echo "IGCM_sys_TestDir :" $@ |
---|
| 560 | fi |
---|
| 561 | typeset ExistFlag |
---|
| 562 | ExistFlag=$( [ -d $1 ] && echo 0 || echo 1 ) |
---|
| 563 | IGCM_debug_PopStack "IGCM_sys_TestDir" |
---|
[622] | 564 | |
---|
[623] | 565 | return ${ExistFlag} |
---|
[622] | 566 | } |
---|
| 567 | |
---|
| 568 | #D-#================================================== |
---|
| 569 | #D-function IGCM_sys_TestDirArchive |
---|
| 570 | #D-* Purpose: Test Directory that must exists on Archive |
---|
| 571 | #D-* Examples: |
---|
| 572 | #D- |
---|
| 573 | function IGCM_sys_TestDirArchive { |
---|
[623] | 574 | IGCM_debug_PushStack "IGCM_sys_TestDirArchive" $@ |
---|
| 575 | if ( $DEBUG_sys ) ; then |
---|
| 576 | echo "IGCM_sys_TestDirArchive :" $@ |
---|
| 577 | fi |
---|
| 578 | typeset ExistFlag |
---|
| 579 | ExistFlag=$( [ -d $1 ] && echo 0 || echo 1 ) |
---|
| 580 | IGCM_debug_PopStack "IGCM_sys_TestDirArchive" |
---|
| 581 | return ${ExistFlag} |
---|
[622] | 582 | } |
---|
| 583 | |
---|
| 584 | #D-#================================================== |
---|
[623] | 585 | #D-function IGCM_sys_IsFileArchived |
---|
| 586 | #D-* Purpose: Test file that must NOT EXISTS on Archive |
---|
| 587 | #D-* Examples: |
---|
| 588 | #D- |
---|
| 589 | function IGCM_sys_IsFileArchived { |
---|
| 590 | IGCM_debug_PushStack "IGCM_sys_IsFileArchived" $@ |
---|
| 591 | if ( $DEBUG_sys ) ; then |
---|
| 592 | echo "IGCM_sys_IsFileArchived :" $@ |
---|
| 593 | fi |
---|
| 594 | typeset IsArchivedFlag |
---|
[818] | 595 | IsArchivedFlag=$( [ X$( echo $@ | grep ^\/ccc\/store ) != X ] && echo 0 || echo 1 ) |
---|
[623] | 596 | IGCM_debug_PopStack "IGCM_sys_IsFileArchived" |
---|
| 597 | |
---|
| 598 | return ${IsArchivedFlag} |
---|
| 599 | } |
---|
| 600 | |
---|
| 601 | #D-#================================================== |
---|
[622] | 602 | #D-function IGCM_sys_TestFileArchive |
---|
| 603 | #D-* Purpose: Test file that must NOT EXISTS on Archive |
---|
| 604 | #D-* Examples: |
---|
| 605 | #D- |
---|
| 606 | function IGCM_sys_TestFileArchive { |
---|
[623] | 607 | IGCM_debug_PushStack "IGCM_sys_TestFileArchive" $@ |
---|
| 608 | typeset ExistFlag |
---|
| 609 | ExistFlag=$( [ -f $1 ] && echo 0 || echo 1 ) |
---|
| 610 | IGCM_debug_PopStack "IGCM_sys_TestFileArchive" |
---|
[622] | 611 | |
---|
[623] | 612 | return ${ExistFlag} |
---|
[622] | 613 | } |
---|
| 614 | |
---|
| 615 | #D-#================================================== |
---|
[623] | 616 | #D-function IGCM_sys_TestFileBuffer |
---|
| 617 | #D-* Purpose: Test file that must NOT EXISTS on Buffer |
---|
| 618 | #D-* Examples: |
---|
| 619 | #D- |
---|
| 620 | function IGCM_sys_TestFileBuffer { |
---|
| 621 | IGCM_debug_PushStack "IGCM_sys_TestFileBuffer" $@ |
---|
| 622 | typeset ExistFlag |
---|
| 623 | ExistFlag=$( [ -f $1 ] && echo 0 || echo 1 ) |
---|
| 624 | IGCM_debug_PopStack "IGCM_sys_TestFileBuffer" |
---|
| 625 | |
---|
| 626 | return ${ExistFlag} |
---|
| 627 | } |
---|
| 628 | |
---|
| 629 | #D-#================================================== |
---|
[622] | 630 | #D-function IGCM_sys_CountFileArchive |
---|
| 631 | #D-* Purpose: Count files on Archive filesystem |
---|
| 632 | #D-* Examples: |
---|
| 633 | #D- |
---|
| 634 | function IGCM_sys_CountFileArchive { |
---|
[623] | 635 | IGCM_debug_PushStack "IGCM_sys_CountFileArchive" $@ |
---|
| 636 | ls ${@} 2>/dev/null | wc -l |
---|
| 637 | if [ $? -gt 0 ] ; then |
---|
| 638 | echo "IGCM_sys_CountFileArchive : erreur." |
---|
| 639 | fi |
---|
| 640 | IGCM_debug_PopStack "IGCM_sys_CountFileArchive" |
---|
[622] | 641 | } |
---|
| 642 | |
---|
| 643 | #D-#================================================== |
---|
[623] | 644 | #D-function IGCM_sys_CountFileBuffer |
---|
| 645 | #D-* Purpose: Count files on Scratch filesystem |
---|
| 646 | #D-* Examples: |
---|
| 647 | #D- |
---|
| 648 | function IGCM_sys_CountFileBuffer { |
---|
| 649 | IGCM_debug_PushStack "IGCM_sys_CountFileBuffer" $@ |
---|
| 650 | ls ${@} 2>/dev/null | wc -l |
---|
| 651 | if [ $? -gt 0 ] ; then |
---|
| 652 | echo "IGCM_sys_CountFileBuffer : erreur." |
---|
| 653 | fi |
---|
| 654 | IGCM_debug_PopStack "IGCM_sys_CountFileBuffer" |
---|
| 655 | } |
---|
| 656 | |
---|
| 657 | #D-#================================================== |
---|
[622] | 658 | #D-function IGCM_sys_Tree |
---|
| 659 | #D-* Purpose: Tree directories with files on ${ARCHIVE} |
---|
| 660 | #D-* Examples: IGCM_sys_Tree ${R_IN} ${R_OUT} |
---|
| 661 | #D- |
---|
| 662 | function IGCM_sys_Tree { |
---|
[623] | 663 | IGCM_debug_PushStack "IGCM_sys_Tree" $@ |
---|
| 664 | if ( $DEBUG_sys ) ; then |
---|
| 665 | echo "IGCM_sys_Tree :" $@ |
---|
| 666 | fi |
---|
[622] | 667 | |
---|
[623] | 668 | \ls -lR ${@} |
---|
[622] | 669 | |
---|
[623] | 670 | IGCM_debug_PopStack "IGCM_sys_Tree" |
---|
[622] | 671 | } |
---|
| 672 | |
---|
| 673 | #D-#================================================== |
---|
| 674 | #D-function IGCM_sys_Tar |
---|
[623] | 675 | #D-* Purpose: master tar command |
---|
[622] | 676 | #D-* Examples: |
---|
| 677 | #D- |
---|
| 678 | function IGCM_sys_Tar { |
---|
[623] | 679 | IGCM_debug_PushStack "IGCM_sys_Tar" $@ |
---|
| 680 | if ( $DEBUG_sys ) ; then |
---|
| 681 | echo "IGCM_sys_Tar :" $@ |
---|
| 682 | fi |
---|
| 683 | \tar cf $@ |
---|
| 684 | if [ $? -gt 0 ] ; then |
---|
| 685 | echo "IGCM_sys_Tar : erreur." |
---|
| 686 | IGCM_debug_Exit "IGCM_sys_Tar" |
---|
| 687 | fi |
---|
| 688 | IGCM_debug_PopStack "IGCM_sys_Tar" |
---|
[622] | 689 | } |
---|
| 690 | |
---|
| 691 | #D-#================================================== |
---|
| 692 | #D-function IGCM_sys_UnTar |
---|
| 693 | #D-* Purpose: master un-tar command |
---|
| 694 | #D-* Examples: |
---|
| 695 | #D- |
---|
| 696 | function IGCM_sys_UnTar { |
---|
[623] | 697 | IGCM_debug_PushStack "IGCM_sys_UnTar" $@ |
---|
| 698 | if ( $DEBUG_sys ) ; then |
---|
| 699 | echo "IGCM_sys_UnTar :" $@ |
---|
| 700 | fi |
---|
| 701 | \tar xvf $1 |
---|
| 702 | if [ $? -gt 0 ] ; then |
---|
| 703 | echo "IGCM_sys_UnTar : erreur." |
---|
| 704 | IGCM_debug_Exit "IGCM_sys_UnTar" |
---|
| 705 | fi |
---|
| 706 | IGCM_debug_PopStack "IGCM_sys_UnTar" |
---|
[622] | 707 | } |
---|
| 708 | |
---|
| 709 | #D-#================================================== |
---|
| 710 | #D-function IGCM_sys_Qsub |
---|
| 711 | #D-* Purpose: Qsub new job |
---|
| 712 | #D-* Examples: |
---|
| 713 | #D- |
---|
| 714 | function IGCM_sys_Qsub { |
---|
[623] | 715 | IGCM_debug_PushStack "IGCM_sys_Qsub" $@ |
---|
| 716 | if ( $DEBUG_sys ) ; then |
---|
| 717 | echo "IGCM_sys_Qsub :" $@ |
---|
| 718 | fi |
---|
[811] | 719 | typeset options status |
---|
[923] | 720 | options="-o ${SUBMIT_DIR}/${Script_Output} -e ${SUBMIT_DIR}/${Script_Output}" |
---|
[622] | 721 | |
---|
[948] | 722 | /usr/bin/ccc_msub ${options} $1 > /tmp/out_command.$$ 2>&1 |
---|
[811] | 723 | status=$? |
---|
[948] | 724 | |
---|
| 725 | cat /tmp/out_command.$$ |
---|
[811] | 726 | if [ ${status} -gt 0 ] ; then |
---|
| 727 | IGCM_debug_Print 2 "IGCM_sys_Qsub ${options} $1 : error code ${status}" |
---|
[623] | 728 | IGCM_debug_Exit "IGCM_sys_Qsub" |
---|
[948] | 729 | else |
---|
| 730 | JobID=$( gawk {'print $4'} /tmp/out_command.$$ ) |
---|
[623] | 731 | fi |
---|
| 732 | IGCM_debug_PopStack "IGCM_sys_Qsub" |
---|
[622] | 733 | } |
---|
| 734 | |
---|
| 735 | #D-#================================================== |
---|
| 736 | #D-function IGCM_sys_QsubPost |
---|
| 737 | #D-* Purpose: Qsub new job on scalaire |
---|
| 738 | #D-* Examples: |
---|
| 739 | #D- |
---|
| 740 | function IGCM_sys_QsubPost { |
---|
[623] | 741 | IGCM_debug_PushStack "IGCM_sys_QsubPost" $@ |
---|
| 742 | if ( $DEBUG_sys ) ; then |
---|
| 743 | echo "IGCM_sys_QsubPost :" $@ |
---|
| 744 | fi |
---|
[923] | 745 | typeset options status |
---|
[880] | 746 | MY_PROJECT=$(echo ${BRIDGE_MSUB_PROJECT:=${DEFAULT_PROJECT}} | cut -d@ -f1 ) |
---|
[923] | 747 | |
---|
[1062] | 748 | # EASIER TO DO THIS INSTEAD OF DUPLICATING libIGCM_sys_curie.ksh |
---|
| 749 | case $( hostname -s ) in |
---|
| 750 | curie*) |
---|
| 751 | options="-Q normal -A ${MY_PROJECT} -o ${POST_DIR}/${Script_Post_Output}.out -e ${POST_DIR}/${Script_Post_Output}.out";; |
---|
| 752 | airain*) |
---|
| 753 | options="-q ivybridge -A dsm -o ${POST_DIR}/${Script_Post_Output}.out -e ${POST_DIR}/${Script_Post_Output}.out" |
---|
| 754 | esac |
---|
| 755 | |
---|
[948] | 756 | /usr/bin/ccc_msub ${options} ${libIGCM_POST}/$1.job > /tmp/out_command.$$ 2>&1 |
---|
[811] | 757 | status=$? |
---|
[948] | 758 | |
---|
| 759 | cat /tmp/out_command.$$ |
---|
[811] | 760 | if [ ${status} -gt 0 ] ; then |
---|
[923] | 761 | IGCM_debug_Print 2 "IGCM_sys_QsubPost ${options} ${libIGCM_POST}/$1.job : error code ${status}" |
---|
[623] | 762 | IGCM_debug_Exit "IGCM_sys_QsubPost" |
---|
[948] | 763 | else |
---|
| 764 | JobID=$( gawk {'print $4'} /tmp/out_command.$$ ) |
---|
[623] | 765 | fi |
---|
| 766 | IGCM_debug_PopStack "IGCM_sys_QsubPost" |
---|
[622] | 767 | } |
---|
| 768 | |
---|
| 769 | #D-************************* |
---|
[623] | 770 | #D- File transfer functions |
---|
[622] | 771 | #D-************************* |
---|
| 772 | #D- |
---|
| 773 | |
---|
| 774 | #D-#================================================== |
---|
| 775 | #D-function IGCM_sys_Rsync_out |
---|
| 776 | #D-* Purpose: treat return val of rsync |
---|
| 777 | #D-* Examples: IGCM_sys_Rsync_out out_RET_rsync |
---|
| 778 | #D- Error values and explanations can depend on your system version. |
---|
| 779 | function IGCM_sys_Rsync_out { |
---|
[719] | 780 | status=$1 |
---|
| 781 | if [ ! $status ] ; then |
---|
[623] | 782 | echo "rsync error !" |
---|
| 783 | fi |
---|
[622] | 784 | |
---|
[623] | 785 | if [ $MYLANG = "fr" ]; then |
---|
[719] | 786 | case $status in |
---|
[623] | 787 | 0) return ;; |
---|
| 788 | 1) echo "Erreur de rsync ; RERR_SYNTAX : " |
---|
| 789 | echo "Erreur de syntaxe ou d'utilisation." |
---|
| 790 | return;; |
---|
| 791 | 2) echo "Erreur de rsync ; RERR_PROTOCOL : " |
---|
| 792 | echo "Incompatibilité de protocole." |
---|
| 793 | return;; |
---|
| 794 | 3) echo "Erreur de rsync ; RERR_FILESELECT 3" |
---|
| 795 | echo "Erreurs lors de la sélection des fichiers d'entrée sortie et" |
---|
| 796 | echo "répertoires" |
---|
| 797 | return;; |
---|
| 798 | 4) echo "Erreur de rsync ; RERR_UNSUPPORTED" |
---|
| 799 | echo "Action demandée non supportée : une tentative de manipulation de" |
---|
| 800 | echo "fichiers 64-bits sur une plate-forme qui ne les supporte pas a" |
---|
| 801 | echo "été faite ; ou une option qui est supportée par le client mais" |
---|
| 802 | echo "pas par le serveur a été spécifiée." |
---|
| 803 | return;; |
---|
| 804 | 10) echo "Erreur de rsync ; RERR_SOCKETIO" |
---|
| 805 | echo "Erreur dans le socket d'entrée sortie" |
---|
| 806 | return;; |
---|
| 807 | 11) echo "Erreur de rsync ; RERR_FILEIO" |
---|
| 808 | echo "Erreur d'entrée sortie fichier" |
---|
| 809 | return;; |
---|
| 810 | 12) echo "Erreur de rsync ; RERR_STREAMIO" |
---|
| 811 | echo "Erreur dans flux de donnée du protocole rsync" |
---|
| 812 | return;; |
---|
| 813 | 13) echo "Erreur de rsync ; RERR_MESSAGEIO" |
---|
| 814 | echo "Erreur avec les diagnostics du programme" |
---|
| 815 | return;; |
---|
| 816 | 14) echo "Erreur de rsync ; RERR_IPC" |
---|
| 817 | echo "Erreur dans le code IPC" |
---|
| 818 | return;; |
---|
| 819 | 20) echo "Erreur de rsync ; RERR_SIGNAL" |
---|
| 820 | echo "SIGUSR1 ou SIGINT reçu" |
---|
| 821 | return;; |
---|
| 822 | 21) echo "Erreur de rsync ; RERR_WAITCHILD" |
---|
| 823 | echo "Une erreur retournée par waitpid()" |
---|
| 824 | return;; |
---|
| 825 | 22) echo "Erreur de rsync ; RERR_MALLOC" |
---|
| 826 | echo "Erreur lors de l'allocation des tampons de mémoire de coeur" |
---|
| 827 | return;; |
---|
| 828 | 23) echo "" |
---|
| 829 | echo "Erreur fichier inexistant" |
---|
| 830 | return;; |
---|
| 831 | 30) echo "Erreur de rsync ; RERR_TIMEOUT" |
---|
| 832 | echo "Temps d'attente écoulé dans l'envoi/réception de données" |
---|
| 833 | return;; |
---|
[719] | 834 | *) echo "Erreur de rsync : code de retour de rsync inconnu :" $status |
---|
[623] | 835 | return;; |
---|
| 836 | esac |
---|
| 837 | elif [ $MYLANG = "en" ] ; then |
---|
[719] | 838 | case $status in |
---|
[623] | 839 | 0) return;; |
---|
| 840 | 1) echo "rsync error : Syntax or usage error " |
---|
| 841 | return;; |
---|
| 842 | 2) echo "rsync error : Protocol incompatibility " |
---|
| 843 | return;; |
---|
| 844 | 3) echo "rsync error : Errors selecting input/output files, dirs" |
---|
| 845 | return;; |
---|
| 846 | 4) echo "rsync error : Requested action not supported: an attempt" |
---|
| 847 | echo "was made to manipulate 64-bit files on a platform that cannot support" |
---|
| 848 | echo "them; or an option was specified that is supported by the client and" |
---|
| 849 | echo "not by the server." |
---|
| 850 | return;; |
---|
| 851 | 5) echo "rsync error : Error starting client-server protocol" |
---|
| 852 | return;; |
---|
| 853 | 10) echo "rsync error : Error in socket I/O " |
---|
| 854 | return;; |
---|
| 855 | 11) echo "rsync error : Error in file I/O " |
---|
| 856 | return;; |
---|
| 857 | 12) echo "rsync error : Error in rsync protocol data stream " |
---|
| 858 | return;; |
---|
| 859 | 13) echo "rsync error : Errors with program diagnostics " |
---|
| 860 | return;; |
---|
| 861 | 14) echo "rsync error : Error in IPC code " |
---|
| 862 | return;; |
---|
| 863 | 20) echo "rsync error : Received SIGUSR1 or SIGINT " |
---|
| 864 | return;; |
---|
| 865 | 21) echo "rsync error : Some error returned by waitpid() " |
---|
| 866 | return;; |
---|
| 867 | 22) echo "rsync error : Error allocating core memory buffers " |
---|
| 868 | return;; |
---|
| 869 | 23) echo "rsync error : Partial transfer due to error" |
---|
| 870 | return;; |
---|
| 871 | 24) echo "rsync error : Partial transfer due to vanished source files" |
---|
| 872 | return;; |
---|
| 873 | 30) echo "rsync error : Timeout in data send/receive " |
---|
| 874 | return;; |
---|
[719] | 875 | *) echo "rsync error : return code of rsync unknown :" $status |
---|
[623] | 876 | return;; |
---|
| 877 | esac |
---|
| 878 | else |
---|
| 879 | echo "unknown language $MYLANG." |
---|
| 880 | return |
---|
| 881 | fi |
---|
[622] | 882 | } |
---|
| 883 | |
---|
| 884 | #D-#================================================== |
---|
| 885 | #D-function IGCM_sys_Miror_libIGCM |
---|
[811] | 886 | #D-* Purpose: Mirror libIGCM PATH and lib to frontend |
---|
[622] | 887 | #D-* Examples: |
---|
| 888 | #D- |
---|
| 889 | function IGCM_sys_Mirror_libIGCM { |
---|
[623] | 890 | IGCM_debug_PushStack "IGCM_sys_Mirror_libIGCM" |
---|
| 891 | if ( $DEBUG_sys ) ; then |
---|
| 892 | echo "IGCM_sys_Mirror_libIGCM" |
---|
| 893 | fi |
---|
[622] | 894 | |
---|
[773] | 895 | typeset status |
---|
[622] | 896 | |
---|
[623] | 897 | mkdir -p ${HOME}/MIRROR/${PATHlibIGCM} |
---|
[622] | 898 | |
---|
[938] | 899 | echo ${RSYNC} ${RSYNC_opt} ${libIGCM} ${HOME}/MIRROR/${PATHlibIGCM} > /tmp/out_command.$$ 2>&1 |
---|
| 900 | ${RSYNC} ${RSYNC_opt} ${libIGCM} ${HOME}/MIRROR/${PATHlibIGCM} >> /tmp/out_command.$$ 2>&1 |
---|
[715] | 901 | status=$? |
---|
[622] | 902 | |
---|
[715] | 903 | if [ ${status} -gt 0 ] ; then |
---|
[811] | 904 | echo "IGCM_sys_Mirror_libIGCM Warning : no libIGCM on frontend." |
---|
[938] | 905 | cat /tmp/out_command.$$ |
---|
[623] | 906 | fi |
---|
| 907 | IGCM_debug_PopStack "IGCM_sys_Mirror_libIGCM" |
---|
[622] | 908 | } |
---|
| 909 | |
---|
| 910 | #D-#================================================== |
---|
| 911 | #D-function IGCM_sys_Cp |
---|
| 912 | #D-* Purpose: generic cp |
---|
| 913 | #D-* Examples: |
---|
| 914 | #D- |
---|
| 915 | function IGCM_sys_Cp { |
---|
[623] | 916 | IGCM_debug_PushStack "IGCM_sys_Cp" $@ |
---|
| 917 | if ( $DEBUG_sys ) ; then |
---|
| 918 | echo "IGCM_sys_Cp :" $@ |
---|
| 919 | fi |
---|
[622] | 920 | |
---|
[715] | 921 | typeset status |
---|
[622] | 922 | |
---|
[938] | 923 | echo cp $@ > /tmp/out_command.$$ 2>&1 |
---|
| 924 | \cp $@ >> /tmp/out_command.$$ 2>&1 |
---|
[715] | 925 | status=$? |
---|
[622] | 926 | |
---|
[715] | 927 | if [ ${status} -gt 0 ] ; then |
---|
| 928 | echo "IGCM_sys_Cp : error code ${status}" |
---|
[938] | 929 | cat /tmp/out_command.$$ |
---|
[623] | 930 | IGCM_debug_Exit "IGCM_sys_Cp" |
---|
| 931 | else |
---|
[938] | 932 | \rm /tmp/out_command.$$ |
---|
[623] | 933 | fi |
---|
| 934 | IGCM_debug_PopStack "IGCM_sys_Cp" |
---|
[622] | 935 | } |
---|
| 936 | |
---|
| 937 | #D-#================================================== |
---|
| 938 | #D-function IGCM_sys_Rm |
---|
| 939 | #D-* Purpose: generic rm |
---|
| 940 | #D-* Examples: |
---|
| 941 | #D- |
---|
| 942 | function IGCM_sys_Rm { |
---|
[1057] | 943 | IGCM_debug_PushStack "IGCM_sys_Rm" $@ |
---|
[623] | 944 | if ( $DEBUG_sys ) ; then |
---|
| 945 | echo "IGCM_sys_Rm :" $@ |
---|
| 946 | fi |
---|
[622] | 947 | |
---|
[715] | 948 | typeset status |
---|
[622] | 949 | |
---|
[938] | 950 | echo rm $@ > /tmp/out_command.$$ 2>&1 |
---|
| 951 | \rm $@ >> /tmp/out_command.$$ 2>&1 |
---|
[715] | 952 | status=$? |
---|
[622] | 953 | |
---|
[715] | 954 | if [ ${status} -gt 0 ] ; then |
---|
| 955 | echo "IGCM_sys_Rm : error code ${status}" |
---|
[938] | 956 | cat /tmp/out_command.$$ |
---|
[623] | 957 | IGCM_debug_Exit "IGCM_sys_Rm" |
---|
| 958 | else |
---|
[938] | 959 | \rm /tmp/out_command.$$ |
---|
[623] | 960 | fi |
---|
| 961 | IGCM_debug_PopStack "IGCM_sys_Rm" |
---|
[622] | 962 | } |
---|
| 963 | |
---|
| 964 | #D-#================================================== |
---|
| 965 | #D-function IGCM_sys_RmRunDir |
---|
| 966 | #D-* Purpose: rm tmpdir (dummy function most of the time batch |
---|
| 967 | #D- scheduler will do the job) |
---|
| 968 | #D-* Examples: |
---|
| 969 | #D- |
---|
| 970 | function IGCM_sys_RmRunDir { |
---|
[1057] | 971 | IGCM_debug_PushStack "IGCM_sys_RmRunDir" $@ |
---|
[623] | 972 | if ( $DEBUG_sys ) ; then |
---|
| 973 | echo "IGCM_sys_RmRunDir :" $@ |
---|
| 974 | fi |
---|
[622] | 975 | |
---|
[715] | 976 | typeset status |
---|
[622] | 977 | |
---|
[938] | 978 | echo rm $@ > /tmp/out_command.$$ 2>&1 |
---|
| 979 | \rm $@ >> /tmp/out_command.$$ 2>&1 |
---|
[715] | 980 | status=$? |
---|
[622] | 981 | |
---|
[715] | 982 | if [ ${status} -gt 0 ] ; then |
---|
[811] | 983 | echo "IGCM_sys_RmRunDir : rm error code is ${status}." |
---|
[938] | 984 | cat /tmp/out_command.$$ |
---|
[623] | 985 | IGCM_debug_Exit "IGCM_sys_RmRunDir" |
---|
| 986 | else |
---|
[938] | 987 | \rm /tmp/out_command.$$ |
---|
[623] | 988 | fi |
---|
| 989 | IGCM_debug_PopStack "IGCM_sys_RmRunDir" |
---|
[622] | 990 | } |
---|
| 991 | |
---|
| 992 | #D-#================================================== |
---|
| 993 | #D-function IGCM_sys_Mv |
---|
| 994 | #D-* Purpose: generic move |
---|
| 995 | #D-* Examples: |
---|
| 996 | #D- |
---|
| 997 | function IGCM_sys_Mv { |
---|
[623] | 998 | IGCM_debug_PushStack "IGCM_sys_Mv" $@ |
---|
| 999 | if ( $DEBUG_sys ) ; then |
---|
| 1000 | echo "IGCM_sys_Mv :" $@ |
---|
| 1001 | fi |
---|
[622] | 1002 | |
---|
[623] | 1003 | if [ $DRYRUN = 0 ]; then |
---|
[622] | 1004 | |
---|
[715] | 1005 | typeset status |
---|
[623] | 1006 | |
---|
[938] | 1007 | echo mv $@ > /tmp/out_command.$$ 2>&1 |
---|
| 1008 | \mv $@ >> /tmp/out_command.$$ 2>&1 |
---|
[715] | 1009 | status=$? |
---|
[623] | 1010 | |
---|
[715] | 1011 | if [ ${status} -gt 0 ] ; then |
---|
| 1012 | echo "IGCM_sys_Mv : error code ${status}" |
---|
[938] | 1013 | cat /tmp/out_command.$$ |
---|
[623] | 1014 | IGCM_debug_Exit "IGCM_sys_Mv" |
---|
[622] | 1015 | else |
---|
[938] | 1016 | \rm /tmp/out_command.$$ |
---|
[622] | 1017 | fi |
---|
[623] | 1018 | fi |
---|
[622] | 1019 | |
---|
[623] | 1020 | IGCM_debug_PopStack "IGCM_sys_Mv" |
---|
[622] | 1021 | } |
---|
| 1022 | |
---|
| 1023 | #D-#================================================== |
---|
| 1024 | #D-function IGCM_sys_Put_Dir |
---|
| 1025 | #D-* Purpose: Copy a complete directory on $(ARCHIVE) |
---|
| 1026 | #D-* Examples: |
---|
| 1027 | #D- |
---|
| 1028 | function IGCM_sys_Put_Dir { |
---|
[623] | 1029 | IGCM_debug_PushStack "IGCM_sys_Put_Dir" $@ |
---|
| 1030 | if ( $DEBUG_sys ) ; then |
---|
| 1031 | echo "IGCM_sys_Put_Dir :" $@ |
---|
| 1032 | fi |
---|
| 1033 | if [ $DRYRUN = 0 ]; then |
---|
| 1034 | if [ ! -d ${1} ] ; then |
---|
| 1035 | echo "WARNING : IGCM_sys_Put_Dir ${1} DOES NOT EXIST ." |
---|
| 1036 | IGCM_debug_PopStack "IGCM_sys_Put_Dir" |
---|
| 1037 | return |
---|
[622] | 1038 | fi |
---|
| 1039 | |
---|
[715] | 1040 | typeset status |
---|
[622] | 1041 | |
---|
[623] | 1042 | # Only if we use rsync |
---|
| 1043 | #IGCM_sys_TestDirArchive $( dirname $2 ) |
---|
| 1044 | # |
---|
| 1045 | #USUAL WAY |
---|
[938] | 1046 | \cp -r $1 $2 > /tmp/out_command.$$ 2>&1 |
---|
[715] | 1047 | status=$? |
---|
[622] | 1048 | |
---|
[715] | 1049 | if [ ${status} -gt 0 ] ; then |
---|
[811] | 1050 | IGCM_debug_Print 2 "IGCM_sys_Put_Dir : cp failed error code ${status}" |
---|
[938] | 1051 | cat /tmp/out_command.$$ |
---|
[623] | 1052 | IGCM_debug_Exit "IGCM_sys_Put_Dir" |
---|
[622] | 1053 | else |
---|
[938] | 1054 | \rm /tmp/out_command.$$ |
---|
[622] | 1055 | fi |
---|
[623] | 1056 | fi |
---|
| 1057 | IGCM_debug_PopStack "IGCM_sys_Put_Dir" |
---|
[622] | 1058 | } |
---|
| 1059 | |
---|
| 1060 | #D-#================================================== |
---|
| 1061 | #D-function IGCM_sys_Get_Dir |
---|
[623] | 1062 | #D-* Purpose: Copy a complete directory from ${ARCHIVE} |
---|
[622] | 1063 | #D-* Examples: |
---|
| 1064 | #D- |
---|
| 1065 | function IGCM_sys_Get_Dir { |
---|
[623] | 1066 | IGCM_debug_PushStack "IGCM_sys_Get_Dir" $@ |
---|
| 1067 | if ( $DEBUG_sys ) ; then |
---|
| 1068 | echo "IGCM_sys_Get_Dir :" $@ |
---|
| 1069 | fi |
---|
| 1070 | if [ $DRYRUN = 0 ]; then |
---|
| 1071 | # if [ ! -d ${1} ] ; then |
---|
| 1072 | # echo "WARNING : IGCM_sys_Get_Dir ${1} DOES NOT EXIST ." |
---|
| 1073 | # IGCM_debug_PopStack "IGCM_sys_Get_Dir" |
---|
| 1074 | # return |
---|
| 1075 | # fi |
---|
[622] | 1076 | |
---|
[708] | 1077 | typeset NB_ESSAI DELAI status i |
---|
| 1078 | # number of tentative |
---|
| 1079 | NB_ESSAI=3 |
---|
| 1080 | # time delay between tentative |
---|
| 1081 | DELAI=2 |
---|
[622] | 1082 | |
---|
[676] | 1083 | # Only if we use rsync |
---|
| 1084 | #IGCM_sys_TestDirArchive $( dirname $2 ) |
---|
| 1085 | # |
---|
[708] | 1086 | # USUAL WAY |
---|
| 1087 | # add 'ccc_hsm get' (to demigrate all offline files) to reduce time of this command : |
---|
[713] | 1088 | ccc_hsm get -r $1 |
---|
[622] | 1089 | |
---|
[709] | 1090 | i=0 |
---|
[708] | 1091 | while [ $i -lt $NB_ESSAI ] ; do |
---|
[938] | 1092 | \cp -ur $1 $2 >> /tmp/out_command.$$ 2>&1 |
---|
[708] | 1093 | status=$? |
---|
[811] | 1094 | if [ ${status} -gt 0 ] ; then |
---|
[713] | 1095 | IGCM_debug_Print 2 "IGCM_sys_Get_Dir : cp failed error code ${status} ${i}/${NB_ESSAI}" |
---|
[708] | 1096 | IGCM_debug_Print 2 "IGCM_sys_Get_Dir : sleep ${DELAI} seconds and try again." |
---|
| 1097 | sleep $DELAI |
---|
| 1098 | else |
---|
| 1099 | break |
---|
| 1100 | fi |
---|
| 1101 | (( i = i + 1 )) |
---|
| 1102 | done |
---|
| 1103 | |
---|
| 1104 | if [ ${status} -gt 0 ] ; then |
---|
[623] | 1105 | echo "IGCM_sys_Get_Dir : error." |
---|
[938] | 1106 | cat /tmp/out_command.$$ |
---|
[623] | 1107 | IGCM_debug_Exit "IGCM_sys_Get_Dir" |
---|
[622] | 1108 | else |
---|
[938] | 1109 | \rm /tmp/out_command.$$ |
---|
[622] | 1110 | fi |
---|
[623] | 1111 | fi |
---|
| 1112 | IGCM_debug_PopStack "IGCM_sys_Get_Dir" |
---|
[622] | 1113 | } |
---|
| 1114 | |
---|
| 1115 | #D-#================================================== |
---|
| 1116 | #D-function IGCM_sys_Get_Master |
---|
| 1117 | #D-* Purpose: Copy a complete directory from MASTER filesystem |
---|
| 1118 | #D-* Examples: |
---|
| 1119 | #D- |
---|
| 1120 | function IGCM_sys_Get_Master { |
---|
[623] | 1121 | IGCM_debug_PushStack "IGCM_sys_Get_Master" $@ |
---|
| 1122 | if ( $DEBUG_sys ) ; then |
---|
| 1123 | echo "IGCM_sys_Get_Master :" $@ |
---|
| 1124 | fi |
---|
| 1125 | if [ $DRYRUN = 0 ]; then |
---|
[640] | 1126 | if ( [ ! -d ${1} ] && [ ! -f ${1} ] ) ; then |
---|
[623] | 1127 | echo "WARNING : IGCM_sys_Get_Master ${1} DOES NOT EXIST ." |
---|
| 1128 | IGCM_debug_PopStack "IGCM_sys_Get_Master" |
---|
| 1129 | return |
---|
[622] | 1130 | fi |
---|
| 1131 | |
---|
[708] | 1132 | typeset NB_ESSAI DELAI status i |
---|
| 1133 | # number of tentative |
---|
| 1134 | NB_ESSAI=3 |
---|
| 1135 | # time delay between tentative |
---|
| 1136 | DELAI=2 |
---|
[622] | 1137 | |
---|
[709] | 1138 | i=0 |
---|
[708] | 1139 | while [ $i -lt $NB_ESSAI ] ; do |
---|
[938] | 1140 | \cp -urL $1 $2 > /tmp/out_command.$$ 2>&1 |
---|
[708] | 1141 | status=$? |
---|
| 1142 | if [ ${status} -gt 0 ]; then |
---|
[713] | 1143 | IGCM_debug_Print 2 "IGCM_sys_Get_Master : cp failed error code ${status} ${i}/${NB_ESSAI}" |
---|
[708] | 1144 | IGCM_debug_Print 2 "IGCM_sys_Get_Master : sleep ${DELAI} seconds and try again." |
---|
| 1145 | sleep $DELAI |
---|
| 1146 | else |
---|
| 1147 | break |
---|
| 1148 | fi |
---|
| 1149 | (( i = i + 1 )) |
---|
| 1150 | done |
---|
[622] | 1151 | |
---|
[708] | 1152 | if [ ${status} -gt 0 ] ; then |
---|
[623] | 1153 | echo "IGCM_sys_Get_Master : error." |
---|
[938] | 1154 | cat /tmp/out_command.$$ |
---|
[623] | 1155 | IGCM_debug_Exit "IGCM_sys_Get_Master" |
---|
[622] | 1156 | else |
---|
[938] | 1157 | \rm /tmp/out_command.$$ |
---|
[622] | 1158 | fi |
---|
[623] | 1159 | fi |
---|
| 1160 | IGCM_debug_PopStack "IGCM_sys_Get_Master" |
---|
[622] | 1161 | } |
---|
| 1162 | |
---|
[689] | 1163 | #==================================================== |
---|
| 1164 | #- Call IGCM_sys_Mirror_libIGCM now ! |
---|
| 1165 | if ( $MirrorlibIGCM ) ; then |
---|
| 1166 | IGCM_sys_Mirror_libIGCM |
---|
| 1167 | fi |
---|
| 1168 | |
---|
[622] | 1169 | #D-#================================================== |
---|
| 1170 | #D-function IGCM_sys_Put_Rest |
---|
[623] | 1171 | #D-* Purpose: Put computied restarts on ${ARCHIVE}. |
---|
[622] | 1172 | #D- File and target directory must exist. |
---|
| 1173 | #D-* Examples: |
---|
| 1174 | #D- |
---|
| 1175 | function IGCM_sys_Put_Rest { |
---|
[623] | 1176 | IGCM_debug_PushStack "IGCM_sys_Put_Rest" $@ |
---|
| 1177 | if ( $DEBUG_sys ) ; then |
---|
| 1178 | echo "IGCM_sys_Put_Rest :" $@ |
---|
| 1179 | fi |
---|
| 1180 | if [ $DRYRUN = 0 ]; then |
---|
| 1181 | if [ ! -f ${1} ] ; then |
---|
| 1182 | echo "ERROR : IGCM_sys_Put_Rest ${1} DOES NOT EXIST ." |
---|
| 1183 | IGCM_debug_Exit "IGCM_sys_Put_Rest" |
---|
[622] | 1184 | fi |
---|
| 1185 | |
---|
[715] | 1186 | typeset status |
---|
[623] | 1187 | # |
---|
| 1188 | # USUAL WAY |
---|
[938] | 1189 | \cp $1 $2 > /tmp/out_command.$$ 2>&1 |
---|
[715] | 1190 | status=$? |
---|
[622] | 1191 | |
---|
[623] | 1192 | # #RSYNC WITH NETWORK SSH CALL |
---|
[938] | 1193 | # echo ${RSYNC} ${RSYNC_opt} -e ssh ${RUN_DIR}/$1 ${STOREHOST}:${2} > /tmp/out_command.$$ 2>&1 |
---|
| 1194 | # ${RSYNC} ${RSYNC_opt} -e ssh ${RUN_DIR}/$1 ${STOREHOST}:${2} >> /tmp/out_command.$$ 2>&1 |
---|
[622] | 1195 | |
---|
[623] | 1196 | # #RSYNC WITH NFS USE |
---|
[938] | 1197 | # echo ${RSYNC} ${RSYNC_opt} ${RUN_DIR}/$1 ${2} > /tmp/out_command.$$ 2>&1 |
---|
| 1198 | # ${RSYNC} ${RSYNC_opt} ${RUN_DIR}/$1 ${2} >> /tmp/out_command.$$ 2>&1 |
---|
[622] | 1199 | |
---|
[715] | 1200 | # status=$? |
---|
| 1201 | # IGCM_sys_Rsync_out $status |
---|
[622] | 1202 | |
---|
[938] | 1203 | # ${libIGCM}/libIGCM_sys/IGCM_analyse_rsync_out.awk /tmp/out_command.$$ |
---|
[715] | 1204 | # (( status=status+$? )) |
---|
[623] | 1205 | |
---|
[715] | 1206 | if [ ${status} -gt 0 ] ; then |
---|
| 1207 | echo "IGCM_sys_Put_Rest : cp failed error code ${status}" |
---|
[765] | 1208 | [ -f ${1} ] && ls -l ${1} |
---|
[759] | 1209 | [ -f ${2} ] && ls -l ${2} |
---|
| 1210 | [ -f ${2}/${1} ] && ls -l ${2}/${1} |
---|
[938] | 1211 | cat /tmp/out_command.$$ |
---|
[623] | 1212 | IGCM_debug_Exit "IGCM_sys_Put_Rest" |
---|
[622] | 1213 | else |
---|
[759] | 1214 | |
---|
| 1215 | if [ X${JobType} = XRUN ] ; then |
---|
| 1216 | [ -f ${2} ] && IGCM_sys_Chmod 444 ${2} |
---|
| 1217 | [ -f ${2}/${1} ] && IGCM_sys_Chmod 444 ${2}/${1} |
---|
| 1218 | fi |
---|
| 1219 | |
---|
[938] | 1220 | \rm /tmp/out_command.$$ |
---|
[622] | 1221 | fi |
---|
[623] | 1222 | fi |
---|
| 1223 | IGCM_debug_PopStack "IGCM_sys_Put_Rest" |
---|
[622] | 1224 | } |
---|
| 1225 | |
---|
| 1226 | #D-#================================================== |
---|
[623] | 1227 | #D-function IGCM_sys_PutBuffer_Rest |
---|
| 1228 | #D-* Purpose: Put computied restarts on ${SCRATCHDIR}. |
---|
| 1229 | #D- File and target directory must exist. |
---|
| 1230 | #D-* Examples: |
---|
| 1231 | #D- |
---|
| 1232 | function IGCM_sys_PutBuffer_Rest { |
---|
| 1233 | IGCM_debug_PushStack "IGCM_sys_PutBuffer_Rest" $@ |
---|
| 1234 | if ( $DEBUG_sys ) ; then |
---|
| 1235 | echo "IGCM_sys_PutBuffer_Rest :" $@ |
---|
| 1236 | fi |
---|
| 1237 | if [ $DRYRUN = 0 ]; then |
---|
| 1238 | if [ ! -f ${1} ] ; then |
---|
| 1239 | echo "ERROR : IGCM_sys_PutBuffer_Rest ${1} DOES NOT EXIST ." |
---|
| 1240 | IGCM_debug_Exit "IGCM_sys_PutBuffer_Rest" |
---|
| 1241 | fi |
---|
| 1242 | |
---|
[715] | 1243 | typeset status |
---|
[623] | 1244 | # |
---|
| 1245 | # USUAL WAY |
---|
[938] | 1246 | \cp $1 $2 > /tmp/out_command.$$ 2>&1 |
---|
[715] | 1247 | status=$? |
---|
[623] | 1248 | |
---|
[715] | 1249 | if [ ${status} -gt 0 ] ; then |
---|
| 1250 | echo "IGCM_sys_PutBuffer_Rest : error code ${status}" |
---|
[759] | 1251 | [ -f ${2} ] && ls -l ${2} |
---|
| 1252 | [ -f ${2}/${1} ] && ls -l ${2}/${1} |
---|
[938] | 1253 | cat /tmp/out_command.$$ |
---|
[623] | 1254 | IGCM_debug_Exit "IGCM_sys_PutBuffer_Rest" |
---|
| 1255 | else |
---|
[759] | 1256 | |
---|
| 1257 | if [ X${JobType} = XRUN ] ; then |
---|
| 1258 | [ -f ${2} ] && IGCM_sys_Chmod 444 ${2} |
---|
| 1259 | [ -f ${2}/${1} ] && IGCM_sys_Chmod 444 ${2}/${1} |
---|
| 1260 | fi |
---|
| 1261 | |
---|
[938] | 1262 | \rm /tmp/out_command.$$ |
---|
[623] | 1263 | fi |
---|
| 1264 | fi |
---|
| 1265 | IGCM_debug_PopStack "IGCM_sys_PutBuffer_Rest" |
---|
| 1266 | } |
---|
| 1267 | |
---|
| 1268 | #D-#================================================== |
---|
[801] | 1269 | #D-function IGCM_sys_PrepareTaredRestart |
---|
| 1270 | #D-* Purpose: Prepare tared restart to be access by computing job. Identity here. |
---|
| 1271 | #D-* Examples: |
---|
| 1272 | #D- |
---|
| 1273 | function IGCM_sys_PrepareTaredRestart { |
---|
| 1274 | IGCM_debug_PushStack "IGCM_sys_PrepareTaredRestart" $@ |
---|
[802] | 1275 | if [ $DRYRUN = 0 ]; then |
---|
[918] | 1276 | [ ! -f $( basename $1 ) ] && IGCM_sys_Get $1 . |
---|
[802] | 1277 | fi |
---|
[801] | 1278 | IGCM_debug_PopStack "IGCM_sys_PrepareTaredRestart" |
---|
| 1279 | } |
---|
| 1280 | |
---|
| 1281 | #D-#================================================== |
---|
[622] | 1282 | #D-function IGCM_sys_Put_Out |
---|
[623] | 1283 | #D-* Purpose: Copy a file on ${ARCHIVE} after having chmod it in readonly |
---|
[622] | 1284 | #D-* Examples: |
---|
| 1285 | #D- |
---|
| 1286 | function IGCM_sys_Put_Out { |
---|
[623] | 1287 | IGCM_debug_PushStack "IGCM_sys_Put_Out" $@ |
---|
| 1288 | if ( $DEBUG_sys ) ; then |
---|
| 1289 | echo "IGCM_sys_Put_Out :" $@ |
---|
| 1290 | fi |
---|
[667] | 1291 | |
---|
[711] | 1292 | typeset NB_ESSAI DELAI status i exist skip |
---|
[667] | 1293 | |
---|
| 1294 | # number of tentative |
---|
[668] | 1295 | NB_ESSAI=3 |
---|
[667] | 1296 | # time delay between tentative |
---|
[668] | 1297 | DELAI=2 |
---|
[667] | 1298 | |
---|
[623] | 1299 | if [ $DRYRUN = 0 ]; then |
---|
| 1300 | if [ ! -f ${1} ] ; then |
---|
| 1301 | echo "WARNING : IGCM_sys_Put_Out ${1} DOES NOT EXIST ." |
---|
| 1302 | IGCM_debug_PopStack "IGCM_sys_Put_Out" |
---|
| 1303 | return 1 |
---|
[622] | 1304 | fi |
---|
[623] | 1305 | # |
---|
| 1306 | IGCM_sys_MkdirArchive $( dirname $2 ) |
---|
| 1307 | # |
---|
[622] | 1308 | |
---|
[623] | 1309 | #===================================================== |
---|
| 1310 | # COMMENT OUT DOUBLE COPY ON SCRATCHDIR |
---|
| 1311 | #===================================================== |
---|
[622] | 1312 | |
---|
[623] | 1313 | #echo ${2} | grep "${R_OUT}" > /dev/null 2>&1 |
---|
| 1314 | #if [ $? -eq 0 ] ; then |
---|
| 1315 | # typeset WORKPATH FILEPATH |
---|
| 1316 | # WORKPATH=$( dirname $2 | sed -e "s|${R_OUT}|${R_BUF}|" ) |
---|
| 1317 | # IGCM_sys_MkdirWork ${WORKPATH} |
---|
| 1318 | # FILEPATH=${WORKPATH}/$( basename $2 ) |
---|
| 1319 | # # |
---|
| 1320 | # IGCM_sys_Cp ${1} ${FILEPATH} |
---|
| 1321 | #fi |
---|
[622] | 1322 | |
---|
[711] | 1323 | exist=false |
---|
| 1324 | skip=false |
---|
| 1325 | if [ -f $2 ] ; then |
---|
| 1326 | IGCM_debug_Print 1 "$2 already exist" |
---|
| 1327 | ccc_hsm get $2 |
---|
| 1328 | exist=true |
---|
| 1329 | if [ "X$( diff $1 $2 )" = X ] ; then |
---|
| 1330 | IGCM_debug_Print 2 "$1 and $2 are the same file, we skip the copy" |
---|
| 1331 | skip=true |
---|
[667] | 1332 | else |
---|
[711] | 1333 | IGCM_debug_Print 2 "$1 and $2 are not the same file, we force the copy" |
---|
| 1334 | skip=false |
---|
[667] | 1335 | fi |
---|
[711] | 1336 | fi |
---|
| 1337 | # |
---|
| 1338 | if ( [ X${exist} = Xtrue ] && [ X${skip} = Xfalse ] ) ; then |
---|
| 1339 | IGCM_sys_Chmod u+w $2 |
---|
| 1340 | fi |
---|
[622] | 1341 | |
---|
[711] | 1342 | if [ X${skip} = Xfalse ] ; then |
---|
[719] | 1343 | i=0 |
---|
[711] | 1344 | while [ $i -lt $NB_ESSAI ] ; do |
---|
[1037] | 1345 | if [ $( stat -c %d $1 ) -ne $( stat -c %d $( dirname $2 ) ) ] ; then |
---|
| 1346 | # USUAL WAY |
---|
| 1347 | \cp $1 $2 > /tmp/out_command.$$ 2>&1 |
---|
| 1348 | status=$? |
---|
| 1349 | else |
---|
| 1350 | # NOT SO USUAL WAY |
---|
| 1351 | \mv $1 $2 > /tmp/out_command.$$ 2>&1 |
---|
| 1352 | status=$? |
---|
| 1353 | fi |
---|
[711] | 1354 | if [ ${status} -gt 0 ]; then |
---|
[713] | 1355 | IGCM_debug_Print 2 "IGCM_sys_Put_Out : cp failed error code ${status} ${i}/${NB_ESSAI}" |
---|
[711] | 1356 | IGCM_debug_Print 2 "IGCM_sys_Put_Out : sleep ${DELAI} seconds and try again." |
---|
[765] | 1357 | [ -f ${1} ] && ls -l ${1} |
---|
[759] | 1358 | [ -f ${2} ] && ls -l ${2} |
---|
| 1359 | [ -f ${2}/${1} ] && ls -l ${2}/${1} |
---|
[711] | 1360 | sleep $DELAI |
---|
| 1361 | else |
---|
| 1362 | break |
---|
| 1363 | fi |
---|
| 1364 | (( i = i + 1 )) |
---|
| 1365 | done |
---|
| 1366 | fi |
---|
| 1367 | |
---|
[623] | 1368 | # #RSYNC WITH NETWORK SSH CALL |
---|
[938] | 1369 | # echo ${RSYNC} ${RSYNC_opt} -e ssh ${RUN_DIR}/$1 ${STOREHOST}:${2} > /tmp/out_command.$$ 2>&1 |
---|
| 1370 | # ${RSYNC} ${RSYNC_opt} -e ssh ${RUN_DIR}/$1 ${STOREHOST}:${2} >> /tmp/out_command.$$ 2>&1 |
---|
[622] | 1371 | |
---|
[623] | 1372 | # #RSYNC WITH NFS USE |
---|
[938] | 1373 | # echo ${RSYNC} ${RSYNC_opt} ${RUN_DIR}/$1 ${2} > /tmp/out_command.$$ 2>&1 |
---|
| 1374 | # ${RSYNC} ${RSYNC_opt} ${RUN_DIR}/$1 ${2} >> /tmp/out_command.$$ 2>&1 |
---|
[622] | 1375 | |
---|
[711] | 1376 | # status=$? |
---|
| 1377 | # IGCM_sys_Rsync_out $status |
---|
[622] | 1378 | |
---|
[938] | 1379 | # ${libIGCM}/libIGCM_sys/IGCM_analyse_rsync_out.awk /tmp/out_command.$$ |
---|
[711] | 1380 | # (( status=status+$? )) |
---|
[622] | 1381 | |
---|
[711] | 1382 | if [ ${status} -gt 0 ] ; then |
---|
[623] | 1383 | echo "IGCM_sys_Put_Out : error." |
---|
[765] | 1384 | [ -f ${1} ] && ls -l ${1} |
---|
[759] | 1385 | [ -f ${2} ] && ls -l ${2} |
---|
| 1386 | [ -f ${2}/${1} ] && ls -l ${2}/${1} |
---|
[938] | 1387 | cat /tmp/out_command.$$ |
---|
[623] | 1388 | IGCM_debug_Exit "IGCM_sys_Put_Out" |
---|
[622] | 1389 | else |
---|
[759] | 1390 | |
---|
| 1391 | if [ X${JobType} = XRUN ] ; then |
---|
| 1392 | if [ X${3} = X ] ; then |
---|
| 1393 | [ -f ${2} ] && IGCM_sys_Chmod 444 ${2} |
---|
| 1394 | [ -f ${2}/${1} ] && IGCM_sys_Chmod 444 ${2}/${1} |
---|
| 1395 | fi |
---|
| 1396 | fi |
---|
| 1397 | |
---|
[938] | 1398 | \rm /tmp/out_command.$$ |
---|
[622] | 1399 | fi |
---|
[623] | 1400 | fi |
---|
| 1401 | IGCM_debug_PopStack "IGCM_sys_Put_Out" |
---|
| 1402 | return 0 |
---|
[622] | 1403 | } |
---|
| 1404 | |
---|
| 1405 | #D-#================================================== |
---|
[623] | 1406 | #D-function IGCM_sys_PutBuffer_Out |
---|
| 1407 | #D-* Purpose: Copy a file on ${SCRATCHDIR} after having chmod it in readonly |
---|
| 1408 | #D-* Examples: |
---|
| 1409 | #D- |
---|
| 1410 | function IGCM_sys_PutBuffer_Out { |
---|
| 1411 | IGCM_debug_PushStack "IGCM_sys_PutBuffer_Out" $@ |
---|
| 1412 | if ( $DEBUG_sys ) ; then |
---|
| 1413 | echo "IGCM_sys_PutBuffer_Out :" $@ |
---|
| 1414 | fi |
---|
[711] | 1415 | |
---|
[773] | 1416 | typeset NB_ESSAI DELAI status i exist skip |
---|
[711] | 1417 | |
---|
| 1418 | # number of tentative |
---|
| 1419 | NB_ESSAI=3 |
---|
| 1420 | # time delay between tentative |
---|
| 1421 | DELAI=2 |
---|
| 1422 | |
---|
[623] | 1423 | if [ $DRYRUN = 0 ]; then |
---|
| 1424 | if [ ! -f ${1} ] ; then |
---|
| 1425 | echo "WARNING : IGCM_sys_PutBuffer_Out ${1} DOES NOT EXIST ." |
---|
| 1426 | IGCM_debug_PopStack "IGCM_sys_PutBuffer_Out" |
---|
| 1427 | return 1 |
---|
| 1428 | fi |
---|
| 1429 | # |
---|
| 1430 | IGCM_sys_Mkdir $( dirname $2 ) |
---|
| 1431 | # |
---|
| 1432 | |
---|
[711] | 1433 | exist=false |
---|
| 1434 | skip=false |
---|
| 1435 | if [ -f $2 ] ; then |
---|
| 1436 | IGCM_debug_Print 1 "$2 already exist" |
---|
| 1437 | exist=true |
---|
| 1438 | if [ "X$( diff $1 $2 )" = X ] ; then |
---|
| 1439 | IGCM_debug_Print 2 "$1 and $2 are the same file, we skip the copy" |
---|
[811] | 1440 | status=0 |
---|
[711] | 1441 | skip=true |
---|
| 1442 | else |
---|
| 1443 | IGCM_debug_Print 2 "$1 and $2 are not the same file, we force the copy" |
---|
| 1444 | skip=false |
---|
| 1445 | fi |
---|
| 1446 | fi |
---|
[623] | 1447 | # |
---|
[711] | 1448 | if ( [ X${exist} = Xtrue ] && [ X${skip} = Xfalse ] ) ; then |
---|
| 1449 | IGCM_sys_Chmod u+w $2 |
---|
| 1450 | fi |
---|
[623] | 1451 | |
---|
[711] | 1452 | if [ X${skip} = Xfalse ] ; then |
---|
| 1453 | i=0 |
---|
| 1454 | while [ $i -lt $NB_ESSAI ] ; do |
---|
[1037] | 1455 | if [ $( stat -c %d $1 ) -ne $( stat -c %d $( dirname $2 ) ) ] ; then |
---|
| 1456 | # USUAL WAY |
---|
| 1457 | \cp $1 $2 > /tmp/out_command.$$ 2>&1 |
---|
| 1458 | status=$? |
---|
| 1459 | else |
---|
| 1460 | # NOT SO USUAL WAY |
---|
| 1461 | \mv $1 $2 > /tmp/out_command.$$ 2>&1 |
---|
| 1462 | status=$? |
---|
| 1463 | fi |
---|
[711] | 1464 | if [ ${status} -gt 0 ]; then |
---|
[713] | 1465 | IGCM_debug_Print 2 "IGCM_sys_PutBuffer_Out : cp failed error code ${status} ${i}/${NB_ESSAI}" |
---|
[711] | 1466 | IGCM_debug_Print 2 "IGCM_sys_PutBuffer_Out : sleep ${DELAI} seconds and try again." |
---|
[759] | 1467 | [ -f ${2} ] && ls -l ${2} |
---|
| 1468 | [ -f ${2}/${1} ] && ls -l ${2}/${1} |
---|
[711] | 1469 | sleep $DELAI |
---|
| 1470 | else |
---|
| 1471 | break |
---|
| 1472 | fi |
---|
| 1473 | (( i = i + 1 )) |
---|
| 1474 | done |
---|
| 1475 | fi |
---|
| 1476 | |
---|
| 1477 | if [ ${status} -gt 0 ] ; then |
---|
[623] | 1478 | echo "IGCM_sys_PutBuffer_Out : error." |
---|
[759] | 1479 | [ -f ${2} ] && ls -l ${2} |
---|
| 1480 | [ -f ${2}/${1} ] && ls -l ${2}/${1} |
---|
[938] | 1481 | cat /tmp/out_command.$$ |
---|
[623] | 1482 | IGCM_debug_Exit "IGCM_sys_PutBuffer_Out" |
---|
| 1483 | else |
---|
[759] | 1484 | |
---|
| 1485 | if [ X${JobType} = XRUN ] ; then |
---|
| 1486 | if [ X${3} = X ] ; then |
---|
| 1487 | [ -f ${2} ] && IGCM_sys_Chmod 444 ${2} |
---|
| 1488 | [ -f ${2}/${1} ] && IGCM_sys_Chmod 444 ${2}/${1} |
---|
| 1489 | fi |
---|
| 1490 | fi |
---|
| 1491 | |
---|
[938] | 1492 | \rm /tmp/out_command.$$ |
---|
[623] | 1493 | fi |
---|
| 1494 | fi |
---|
| 1495 | IGCM_debug_PopStack "IGCM_sys_PutBuffer_Out" |
---|
| 1496 | return 0 |
---|
| 1497 | } |
---|
| 1498 | |
---|
| 1499 | #D-#================================================== |
---|
[622] | 1500 | #D-function IGCM_sys_Get |
---|
| 1501 | #D-* Purpose: Get a file from ${ARCHIVE} |
---|
| 1502 | #D-* Examples: IGCM_sys_Get myfile /destpath/myfile_with_PREFIX |
---|
| 1503 | #D- IGCM_sys_Get /l Array_contain_myfiles /destpath/ |
---|
| 1504 | function IGCM_sys_Get { |
---|
[623] | 1505 | IGCM_debug_PushStack "IGCM_sys_Get" $@ |
---|
[622] | 1506 | |
---|
[773] | 1507 | typeset DEST dm_liste target file_work |
---|
[667] | 1508 | typeset NB_ESSAI DELAI status i |
---|
[622] | 1509 | |
---|
[623] | 1510 | if ( $DEBUG_sys ) ; then |
---|
| 1511 | echo "IGCM_sys_Get :" $@ |
---|
| 1512 | fi |
---|
[667] | 1513 | |
---|
| 1514 | # number of tentative |
---|
[668] | 1515 | NB_ESSAI=3 |
---|
[667] | 1516 | # time delay between tentative |
---|
[668] | 1517 | DELAI=2 |
---|
[667] | 1518 | |
---|
[623] | 1519 | if [ $DRYRUN -le 2 ]; then |
---|
| 1520 | if [ X${1} = X'/l' ] ; then |
---|
| 1521 | eval set +A dm_liste \${${2}} |
---|
| 1522 | else |
---|
| 1523 | eval set +A dm_liste ${1} |
---|
[622] | 1524 | fi |
---|
[623] | 1525 | eval DEST=\${${#}} |
---|
[622] | 1526 | |
---|
[623] | 1527 | #===================================================== |
---|
| 1528 | # COMMENT OUT DOUBLE COPY ON SCRATCHDIR |
---|
| 1529 | #===================================================== |
---|
[622] | 1530 | |
---|
[623] | 1531 | # Is it an R_OUT file (not R_IN) ? |
---|
| 1532 | #echo ${dm_liste[0]} | grep "${R_OUT}" > /dev/null 2>&1 |
---|
| 1533 | #if [ $? -eq 0 ] ; then |
---|
[785] | 1534 | # # Yes ? then we try to get it in SCRATCHDIR |
---|
| 1535 | # set +A file_work $( echo ${dm_liste[*]} | sed -e "s|${R_OUT}|${R_BUF}|g" ) |
---|
| 1536 | # if [ -f ${file_work[0]} ] ; then |
---|
| 1537 | # IGCM_sys_Cp ${file_work[*]} ${DEST} |
---|
| 1538 | # IGCM_debug_PopStack "IGCM_sys_Get" |
---|
| 1539 | # return |
---|
| 1540 | # fi |
---|
[623] | 1541 | #fi |
---|
[622] | 1542 | |
---|
[938] | 1543 | ccc_hsm get ${dm_liste[*]} > /tmp/out_command.$$ 2>&1 |
---|
[715] | 1544 | status=$? |
---|
| 1545 | if [ ${status} -gt 0 ] ; then |
---|
| 1546 | echo "WARNING IGCM_sys_Get : error code ${status}" |
---|
[938] | 1547 | cat /tmp/out_command.$$ |
---|
[623] | 1548 | echo "WARNING IGCM_sys_Get : will stop later if the cp fails." |
---|
| 1549 | fi |
---|
[622] | 1550 | |
---|
[715] | 1551 | #if [ ${status} -gt 0 ] ; then |
---|
[938] | 1552 | # if [ ! "X$( grep "Lost dmusrcmd connection" /tmp/out_command.$$ )" = "X" ] ; then |
---|
| 1553 | # cat /tmp/out_command.$$ |
---|
[785] | 1554 | # echo "WARNING IGCM_sys_Get : Lost dmusrcmd connection : " |
---|
| 1555 | # sleep 30 |
---|
| 1556 | # echo "We try another time" |
---|
[938] | 1557 | ## dmget ${dm_liste[*]} > /tmp/out_command.$$ 2>&1 |
---|
| 1558 | # ccc_hsm get ${dm_liste[*]} > /tmp/out_command.$$ 2>&1 |
---|
[785] | 1559 | # status=$? |
---|
| 1560 | # if [ ${status} -gt 0 ] ; then |
---|
| 1561 | # echo "ERROR IGCM_sys_Get : again demigration error :" |
---|
[938] | 1562 | # cat /tmp/out_command.$$ |
---|
[785] | 1563 | # IGCM_debug_Exit "IGCM_sys_Get" |
---|
[623] | 1564 | # fi |
---|
[785] | 1565 | # else |
---|
| 1566 | # echo "ERROR IGCM_sys_Get : demigration error :" |
---|
[938] | 1567 | # cat /tmp/out_command.$$ |
---|
[785] | 1568 | # IGCM_debug_Exit "IGCM_sys_Get" |
---|
| 1569 | # fi |
---|
[623] | 1570 | #fi |
---|
[622] | 1571 | |
---|
[719] | 1572 | # #RSYNC WITH NETWORK SSH CALL |
---|
[938] | 1573 | # echo ${RSYNC} ${RSYNC_opt} -e ssh ${STOREHOST}:"${dm_liste}" ${STOREHOST}:${RUN_DIR}/${DEST} > /tmp/out_command.$$ 2>&1 |
---|
| 1574 | # ${RSYNC} ${RSYNC_opt} -e ssh ${STOREHOST}:"${dm_liste}" ${STOREHOST}:${RUN_DIR}/${DEST} >> /tmp/out_command.$$ 2>&1 |
---|
[719] | 1575 | |
---|
| 1576 | # #RSYNC WITH NFS USE |
---|
[938] | 1577 | # echo ${RSYNC} ${RSYNC_opt} ${dm_liste} ${RUN_DIR}/${DEST} > /tmp/out_command.$$ 2>&1 |
---|
| 1578 | # ${RSYNC} ${RSYNC_opt} ${dm_liste} ${RUN_DIR}/${DEST} >> /tmp/out_command.$$ 2>&1 |
---|
[719] | 1579 | |
---|
| 1580 | # status=$? |
---|
| 1581 | # IGCM_sys_Rsync_out $status |
---|
| 1582 | |
---|
[938] | 1583 | # ${libIGCM}/libIGCM_sys/IGCM_analyse_rsync_out.awk /tmp/out_command.$$ |
---|
[719] | 1584 | # (( status=status+$? )) |
---|
| 1585 | |
---|
[623] | 1586 | #USUAL WAY |
---|
| 1587 | if [ X${1} = X'/l' ] ; then |
---|
| 1588 | for target in ${dm_liste[*]} ; do |
---|
| 1589 | local_file=$( basename ${target} ) |
---|
[668] | 1590 | # test if the target file is present before the loop |
---|
| 1591 | IGCM_sys_TestFileArchive ${target} |
---|
[715] | 1592 | status=$? |
---|
| 1593 | if [ ${status} -gt 0 ] ; then |
---|
[701] | 1594 | echo "IGCM_sys_Get, ERROR : regular file ${target} DOES NOT EXIST ." |
---|
[668] | 1595 | IGCM_debug_Exit "IGCM_sys_Get" |
---|
| 1596 | else |
---|
[719] | 1597 | i=0 |
---|
[668] | 1598 | while [ $i -lt $NB_ESSAI ] ; do |
---|
[1037] | 1599 | #if [ X${DoLink} = Xtrue ] ; then |
---|
| 1600 | # \ln -s ${target} ${DEST}/${local_file} >> /tmp/out_command.$$ 2>&1 |
---|
| 1601 | # status=$? |
---|
| 1602 | # else |
---|
| 1603 | # \cp ${target} ${DEST}/${local_file} >> /tmp/out_command.$$ 2>&1 |
---|
| 1604 | # status=$? |
---|
| 1605 | #fi |
---|
| 1606 | \ln -s ${target} ${DEST}/${local_file} >> /tmp/out_command.$$ 2>&1 |
---|
[668] | 1607 | status=$? |
---|
| 1608 | if [ ${status} -gt 0 ]; then |
---|
[713] | 1609 | IGCM_debug_Print 2 "IGCM_sys_Get : cp failed error code ${status} ${i}/${NB_ESSAI}" |
---|
[676] | 1610 | IGCM_debug_Print 2 "IGCM_sys_Get : sleep ${DELAI} seconds and try again." |
---|
| 1611 | sleep $DELAI |
---|
[668] | 1612 | else |
---|
[676] | 1613 | break |
---|
[668] | 1614 | fi |
---|
| 1615 | (( i = i + 1 )) |
---|
| 1616 | done |
---|
[719] | 1617 | if [ ${status} -gt 0 ] ; then |
---|
| 1618 | echo "IGCM_sys_Get : error" |
---|
[938] | 1619 | cat /tmp/out_command.$$ |
---|
| 1620 | \rm /tmp/out_command.$$ |
---|
[719] | 1621 | IGCM_debug_Exit "IGCM_sys_Get" |
---|
| 1622 | else |
---|
[938] | 1623 | \rm /tmp/out_command.$$ |
---|
[719] | 1624 | fi |
---|
[668] | 1625 | fi |
---|
[623] | 1626 | done |
---|
| 1627 | else |
---|
[719] | 1628 | i=0 |
---|
| 1629 | while [ $i -lt $NB_ESSAI ] ; do |
---|
[938] | 1630 | \cp ${dm_liste} ${DEST} >> /tmp/out_command.$$ 2>&1 |
---|
[719] | 1631 | status=$? |
---|
| 1632 | if [ ${status} -gt 0 ]; then |
---|
| 1633 | IGCM_debug_Print 2 "IGCM_sys_Get : cp failed error code ${status} ${i}/${NB_ESSAI}" |
---|
| 1634 | IGCM_debug_Print 2 "IGCM_sys_Get : sleep ${DELAI} seconds and try again." |
---|
| 1635 | sleep $DELAI |
---|
| 1636 | else |
---|
| 1637 | break |
---|
| 1638 | fi |
---|
| 1639 | (( i = i + 1 )) |
---|
| 1640 | done |
---|
| 1641 | if [ ${status} -gt 0 ] ; then |
---|
| 1642 | echo "IGCM_sys_Get : error" |
---|
[938] | 1643 | cat /tmp/out_command.$$ |
---|
| 1644 | \rm /tmp/out_command.$$ |
---|
[719] | 1645 | IGCM_debug_Exit "IGCM_sys_Get" |
---|
| 1646 | else |
---|
[938] | 1647 | \rm /tmp/out_command.$$ |
---|
[719] | 1648 | fi |
---|
[623] | 1649 | fi |
---|
| 1650 | fi |
---|
| 1651 | IGCM_debug_PopStack "IGCM_sys_Get" |
---|
| 1652 | } |
---|
[622] | 1653 | |
---|
[623] | 1654 | #D-#================================================== |
---|
| 1655 | #D-function IGCM_sys_GetBuffer |
---|
| 1656 | #D-* Purpose: Get a file from ${SCRATCHDIR} |
---|
| 1657 | #D-* Examples: IGCM_sys_GetBuffer myfile /destpath/myfile_with_PREFIX |
---|
| 1658 | #D- IGCM_sys_GetBuffer /l Array_contain_myfiles /destpath/ |
---|
| 1659 | function IGCM_sys_GetBuffer { |
---|
| 1660 | IGCM_debug_PushStack "IGCM_sys_GetBuffer" $@ |
---|
| 1661 | |
---|
[773] | 1662 | typeset DEST buf_liste target file_work |
---|
[719] | 1663 | typeset NB_ESSAI DELAI status i |
---|
[623] | 1664 | |
---|
| 1665 | if ( $DEBUG_sys ) ; then |
---|
| 1666 | echo "IGCM_sys_GetBuffer :" $@ |
---|
| 1667 | fi |
---|
[719] | 1668 | |
---|
| 1669 | # number of tentative |
---|
| 1670 | NB_ESSAI=3 |
---|
| 1671 | # time delay between tentative |
---|
| 1672 | DELAI=2 |
---|
| 1673 | |
---|
[623] | 1674 | if [ $DRYRUN -le 2 ]; then |
---|
| 1675 | if [ X${1} = X'/l' ] ; then |
---|
| 1676 | eval set +A buf_liste \${${2}} |
---|
[622] | 1677 | else |
---|
[623] | 1678 | eval set +A buf_liste ${1} |
---|
[622] | 1679 | fi |
---|
[623] | 1680 | eval DEST=\${${#}} |
---|
| 1681 | |
---|
| 1682 | #USUAL WAY |
---|
| 1683 | if [ X${1} = X'/l' ] ; then |
---|
| 1684 | for target in ${buf_liste[*]} ; do |
---|
| 1685 | local_file=$( basename ${target} ) |
---|
[719] | 1686 | i=0 |
---|
| 1687 | while [ $i -lt $NB_ESSAI ] ; do |
---|
[938] | 1688 | \cp ${target} ${DEST}/${local_file} >> /tmp/out_command.$$ 2>&1 |
---|
[719] | 1689 | status=$? |
---|
| 1690 | if [ ${status} -gt 0 ]; then |
---|
| 1691 | IGCM_debug_Print 2 "IGCM_sys_GetBuffer : cp failed error code ${status} ${i}/${NB_ESSAI}" |
---|
| 1692 | IGCM_debug_Print 2 "IGCM_sys_GetBuffer : sleep ${DELAI} seconds and try again." |
---|
| 1693 | sleep $DELAI |
---|
| 1694 | else |
---|
| 1695 | break |
---|
| 1696 | fi |
---|
| 1697 | (( i = i + 1 )) |
---|
| 1698 | done |
---|
| 1699 | if [ ${status} -gt 0 ] ; then |
---|
| 1700 | echo "IGCM_sys_Get : error" |
---|
[938] | 1701 | cat /tmp/out_command.$$ |
---|
| 1702 | \rm /tmp/out_command.$$ |
---|
[719] | 1703 | IGCM_debug_Exit "IGCM_sys_GetBuffer" |
---|
| 1704 | else |
---|
[938] | 1705 | \rm /tmp/out_command.$$ |
---|
[719] | 1706 | fi |
---|
[623] | 1707 | done |
---|
| 1708 | else |
---|
[719] | 1709 | i=0 |
---|
| 1710 | while [ $i -lt $NB_ESSAI ] ; do |
---|
[938] | 1711 | \cp ${buf_liste} ${DEST} >> /tmp/out_command.$$ 2>&1 |
---|
[719] | 1712 | status=$? |
---|
| 1713 | if [ ${status} -gt 0 ]; then |
---|
| 1714 | IGCM_debug_Print 2 "IGCM_sys_GetBuffer : cp failed error code ${status} ${i}/${NB_ESSAI}" |
---|
| 1715 | IGCM_debug_Print 2 "IGCM_sys_GetBuffer : sleep ${DELAI} seconds and try again." |
---|
| 1716 | sleep $DELAI |
---|
| 1717 | else |
---|
| 1718 | break |
---|
| 1719 | fi |
---|
| 1720 | (( i = i + 1 )) |
---|
| 1721 | done |
---|
| 1722 | if [ ${status} -gt 0 ] ; then |
---|
| 1723 | echo "IGCM_sys_Get : error" |
---|
[938] | 1724 | cat /tmp/out_command.$$ |
---|
| 1725 | \rm /tmp/out_command.$$ |
---|
[719] | 1726 | IGCM_debug_Exit "IGCM_sys_GetBuffer" |
---|
| 1727 | else |
---|
[938] | 1728 | \rm /tmp/out_command.$$ |
---|
[719] | 1729 | fi |
---|
[623] | 1730 | fi |
---|
| 1731 | fi |
---|
| 1732 | IGCM_debug_PopStack "IGCM_sys_GetBuffer" |
---|
[622] | 1733 | } |
---|
| 1734 | |
---|
| 1735 | #D-#================================================== |
---|
| 1736 | #D-function IGCM_sys_GetDate_FichWork |
---|
| 1737 | #D-* Purpose: donne la date filesys d'un fichier sur le filesystem WORK |
---|
| 1738 | #D-* Examples: |
---|
| 1739 | #D- |
---|
| 1740 | function IGCM_sys_GetDate_FichWork { |
---|
[623] | 1741 | IGCM_debug_PushStack "IGCM_sys_FichWork" $@ |
---|
| 1742 | if ( $DEBUG_sys ) ; then |
---|
| 1743 | echo "IGCM_sys_GetDate_FichWork :" $@ |
---|
| 1744 | fi |
---|
[955] | 1745 | |
---|
| 1746 | if [ $# -ge 3 ] ; then |
---|
| 1747 | mode=$3 |
---|
| 1748 | TimeStyle=$4 |
---|
| 1749 | else |
---|
| 1750 | mode="default" |
---|
| 1751 | TimeStyle="%Y%m%d%H%M%S" |
---|
| 1752 | fi |
---|
| 1753 | |
---|
[623] | 1754 | typeset dateF |
---|
[955] | 1755 | set +A dateF -- $( ls -l --full-time --time-style=+"${TimeStyle}" ${1} ) |
---|
[623] | 1756 | |
---|
[955] | 1757 | case $mode in |
---|
| 1758 | "default") |
---|
| 1759 | eval ${2}=${dateF[5]} |
---|
| 1760 | ;; |
---|
| 1761 | "SplitFields") |
---|
| 1762 | eval ${2}="${dateF[5]}\ ${dateF[6]}" |
---|
| 1763 | ;; |
---|
| 1764 | esac |
---|
| 1765 | |
---|
| 1766 | |
---|
[773] | 1767 | # donne la date filesys d'un fichier sur la machine work |
---|
[623] | 1768 | IGCM_debug_PopStack "IGCM_sys_FichWork" |
---|
[622] | 1769 | } |
---|
| 1770 | |
---|
| 1771 | #D-#================================================== |
---|
| 1772 | #D-function IGCM_sys_GetDate_FichArchive |
---|
[623] | 1773 | #D-* Purpose: donne la date filesys d'un fichier sur le filesystem ARCHIVE |
---|
[622] | 1774 | #D-* Examples: |
---|
| 1775 | #D- |
---|
| 1776 | function IGCM_sys_GetDate_FichArchive { |
---|
[623] | 1777 | IGCM_debug_PushStack "IGCM_sys_FichArchive" $@ |
---|
| 1778 | if ( $DEBUG_sys ) ; then |
---|
| 1779 | echo "IGCM_sys_GetDate_FichArchive :" $@ |
---|
| 1780 | fi |
---|
| 1781 | typeset dateF |
---|
| 1782 | set +A dateF -- $( ls -l --full-time --time-style='+%Y%m%d%H%M%S' ${1} ) |
---|
| 1783 | eval ${2}=${dateF[5]} |
---|
| 1784 | |
---|
| 1785 | IGCM_debug_PopStack "IGCM_sys_FichArchive" |
---|
| 1786 | } |
---|
| 1787 | |
---|
| 1788 | #D-#================================================== |
---|
[835] | 1789 | #D-function IGCM_sys_GetDate_Monitoring |
---|
| 1790 | #D-* Purpose: get the last year for which the monitoring has been computed |
---|
| 1791 | #D-* Examples: |
---|
| 1792 | #D- |
---|
| 1793 | function IGCM_sys_GetDate_Monitoring { |
---|
| 1794 | IGCM_debug_PushStack "IGCM_sys_GetDate_Monitoring" $@ |
---|
| 1795 | if ( $DEBUG_sys ) ; then |
---|
| 1796 | echo "IGCM_sys_GetDate_Monitoring :" $@ |
---|
| 1797 | fi |
---|
| 1798 | |
---|
| 1799 | eval ${2}=$( cdo showyear ${1} 2> /dev/null | gawk '{ print $NF }' ) |
---|
| 1800 | |
---|
| 1801 | IGCM_debug_PopStack "IGCM_sys_GetDate_Monitoring" |
---|
| 1802 | } |
---|
| 1803 | |
---|
| 1804 | #D-#================================================== |
---|
[623] | 1805 | #D-function IGCM_sys_Dods_Rm |
---|
| 1806 | #D-* Purpose: DO NOTHING ! Put ${ARCHIVE} files on DODS internet protocole. |
---|
| 1807 | #D-* Examples: |
---|
| 1808 | #D- |
---|
| 1809 | function IGCM_sys_Dods_Rm { |
---|
| 1810 | if ( $DEBUG_sys ) ; then |
---|
| 1811 | echo "IGCM_sys_Dods_Rm :" $@ |
---|
| 1812 | fi |
---|
[715] | 1813 | typeset status |
---|
[623] | 1814 | if [ $DRYRUN = 0 ]; then |
---|
| 1815 | |
---|
| 1816 | # if [ ! -d /dmnfs/cont003/dods/public/${LOGIN}/${R_DODS}/${1} ] ; then |
---|
| 1817 | # echo "WARNING : IGCM_sys_Dods_Rm /dmnfs/cont003/dods/public/${LOGIN}/${R_DODS}/${1} DOES NOT EXIST ." |
---|
| 1818 | # echo "Nothing has been done." |
---|
| 1819 | # return |
---|
| 1820 | # fi |
---|
| 1821 | |
---|
[649] | 1822 | /ccc/cont003/home/dsm/p86ipsl/bin/dods_rm public/${LOGIN}/${R_DODS}/${1} # > out_dods_rm 2>&1 |
---|
[715] | 1823 | status=$? |
---|
[623] | 1824 | |
---|
[785] | 1825 | # if [ ${status} -gt 0 ] ; then |
---|
| 1826 | # echo "IGCM_sys_Dods_Rm : error." |
---|
| 1827 | # cat out_dods_rm |
---|
| 1828 | # IGCM_debug_Exit "IGCM_sys_Dods_Rm" |
---|
| 1829 | # else |
---|
| 1830 | # rm out_dods_rm |
---|
| 1831 | # fi |
---|
[623] | 1832 | |
---|
| 1833 | fi |
---|
[715] | 1834 | return $status |
---|
[623] | 1835 | } |
---|
| 1836 | |
---|
| 1837 | #D-#================================================== |
---|
| 1838 | #D-function IGCM_sys_Dods_Cp |
---|
| 1839 | #D-* Purpose: Copy $(ARCHIVE) files on DODS internet protocole. |
---|
| 1840 | #D-* Examples: |
---|
| 1841 | #D- |
---|
| 1842 | function IGCM_sys_Dods_Cp { |
---|
| 1843 | if ( $DEBUG_sys ) ; then |
---|
| 1844 | echo "IGCM_sys_Dods_Cp :" $@ |
---|
| 1845 | fi |
---|
[715] | 1846 | typeset status |
---|
[623] | 1847 | if [ $DRYRUN = 0 ]; then |
---|
| 1848 | |
---|
| 1849 | # if [ ! -d ${R_SAVE}/${1} ] ; then |
---|
| 1850 | # echo "WARNING : IGCM_sys_Dods_Cp ${R_SAVE}/${1} DOES NOT EXIST ." |
---|
| 1851 | # echo "Nothing has been done." |
---|
| 1852 | # return |
---|
| 1853 | # fi |
---|
| 1854 | |
---|
[649] | 1855 | /ccc/cont003/home/dsm/p86ipsl/bin/dods_cp ${1} public/${LOGIN}/${R_DODS} # > out_dods_cp 2>&1 |
---|
[715] | 1856 | status=$? |
---|
[623] | 1857 | |
---|
[715] | 1858 | # if [ ${status} -gt 0 ] ; then |
---|
[623] | 1859 | # echo "IGCM_sys_Dods_Cp : error." |
---|
| 1860 | # cat out_dods_cp |
---|
| 1861 | # IGCM_debug_Exit "IGCM_sys_Dods_Cp" |
---|
| 1862 | # else |
---|
| 1863 | # rm out_dods_cp |
---|
| 1864 | # fi |
---|
| 1865 | |
---|
| 1866 | fi |
---|
[715] | 1867 | return $status |
---|
[623] | 1868 | } |
---|
| 1869 | |
---|
| 1870 | #D-#================================================== |
---|
| 1871 | #D-function IGCM_sys_Put_Dods |
---|
| 1872 | #D-* Purpose: Put $(ARCHIVE) files on DODS internet protocole. |
---|
| 1873 | #D-* Examples: |
---|
| 1874 | #D- |
---|
| 1875 | function IGCM_sys_Put_Dods { |
---|
| 1876 | IGCM_debug_PushStack "IGCM_sys_Put_Dods" $@ |
---|
| 1877 | if ( $DEBUG_sys ) ; then |
---|
| 1878 | echo "IGCM_sys_Put_Dods :" $@ |
---|
| 1879 | fi |
---|
[711] | 1880 | #set -vx |
---|
[715] | 1881 | typeset status |
---|
[623] | 1882 | if [ $DRYRUN = 0 ]; then |
---|
| 1883 | if ( [ ! -d ${R_SAVE}/${1} ] && [ ! -d ${R_FIGR}/${1} ] ) ; then |
---|
| 1884 | echo "WARNING IGCM_sys_Put_Dods : None of the following directories exist. Exactly one should." |
---|
| 1885 | echo "WARNING IGCM_sys_Put_Dods : ${R_SAVE}/${1} DOES NOT EXIST." |
---|
| 1886 | echo "WARNING IGCM_sys_Put_Dods : ${R_FIGR}/${1} DOES NOT EXIST." |
---|
| 1887 | IGCM_debug_PopStack "IGCM_sys_Put_Dods" |
---|
| 1888 | return |
---|
[622] | 1889 | fi |
---|
[623] | 1890 | |
---|
| 1891 | if ( [ -d ${R_SAVE}/${1} ] && [ -d ${R_FIGR}/${1} ] ) ; then |
---|
| 1892 | echo "WARNING IGCM_sys_Put_Dods : Both of the following directories exist. Exactly one should." |
---|
| 1893 | echo "WARNING IGCM_sys_Put_Dods : ${R_SAVE}/${1} EXISTS." |
---|
| 1894 | echo "WARNING IGCM_sys_Put_Dods : ${R_FIGR}/${1} EXISTS." |
---|
| 1895 | IGCM_debug_PopStack "IGCM_sys_Put_Dods" |
---|
| 1896 | return |
---|
| 1897 | fi |
---|
| 1898 | # |
---|
| 1899 | if [ -d ${R_SAVE}/${1} ] ; then |
---|
| 1900 | cd ${R_SAVE} |
---|
| 1901 | elif [ -d ${R_FIGR}/${1} ] ; then |
---|
| 1902 | cd ${R_FIGR} |
---|
| 1903 | fi |
---|
| 1904 | |
---|
| 1905 | IGCM_sys_Dods_Rm ${1} |
---|
| 1906 | IGCM_sys_Dods_Cp ${1} |
---|
[715] | 1907 | status=0 |
---|
[623] | 1908 | |
---|
[715] | 1909 | if [ ${status} -gt 0 ] ; then |
---|
[623] | 1910 | echo "IGCM_sys_Put_Dods : error." |
---|
| 1911 | IGCM_debug_Exit "IGCM_sys_Put_Dods" |
---|
| 1912 | fi |
---|
| 1913 | fi |
---|
| 1914 | IGCM_debug_PopStack "IGCM_sys_Put_Dods" |
---|
[622] | 1915 | } |
---|
| 1916 | |
---|
| 1917 | ############################################################## |
---|
| 1918 | # REBUILD OPERATOR |
---|
| 1919 | |
---|
[811] | 1920 | #D-#================================================== |
---|
| 1921 | #D-function IGCM_sys_rebuild |
---|
| 1922 | #D-* Purpose: rebuild parallel files |
---|
| 1923 | #D-* Examples: |
---|
| 1924 | #D- |
---|
[622] | 1925 | function IGCM_sys_rebuild { |
---|
[1057] | 1926 | IGCM_debug_PushStack "IGCM_sys_rebuild" $@ |
---|
[623] | 1927 | if ( $DEBUG_sys ) ; then |
---|
| 1928 | echo "IGCM_sys_rebuild :" $@ |
---|
| 1929 | fi |
---|
[716] | 1930 | |
---|
[734] | 1931 | typeset NB_ESSAI DELAI status i firstArg |
---|
[716] | 1932 | # number of tentative |
---|
| 1933 | NB_ESSAI=3 |
---|
| 1934 | # time delay between tentative |
---|
| 1935 | DELAI=2 |
---|
| 1936 | |
---|
| 1937 | i=0 |
---|
| 1938 | while [ $i -lt $NB_ESSAI ] ; do |
---|
[977] | 1939 | ~p86ipsl/rebuild/src_X64_CURIE/modipsl_v2_2_2_netcdf4.2/bin/rebuild -f -o $@ > /tmp/out_command.$$ 2>&1 |
---|
[716] | 1940 | status=$? |
---|
| 1941 | if [ ${status} -gt 0 ] ; then |
---|
| 1942 | IGCM_debug_Print 2 "IGCM_sys_rebuild : error code ${status}" |
---|
[938] | 1943 | cat /tmp/out_command.$$ |
---|
| 1944 | \rm /tmp/out_command.$$ |
---|
[716] | 1945 | IGCM_debug_Print 2 "IGCM_sys_rebuild : ${i}/${NB_ESSAI} sleep ${DELAI} seconds and try again." |
---|
[734] | 1946 | firstArg=${1} |
---|
| 1947 | \rm ${firstArg} |
---|
[733] | 1948 | sleep $DELAI |
---|
[716] | 1949 | else |
---|
[938] | 1950 | \rm /tmp/out_command.$$ |
---|
[716] | 1951 | break |
---|
| 1952 | fi |
---|
| 1953 | (( i = i + 1 )) |
---|
| 1954 | done |
---|
| 1955 | |
---|
[725] | 1956 | if [ ${status} -gt 0 ] ; then |
---|
[773] | 1957 | echo "IGCM_sys_rebuild : rebuild error code is ${status}" |
---|
[623] | 1958 | IGCM_debug_Exit "rebuild" |
---|
| 1959 | fi |
---|
[622] | 1960 | |
---|
[623] | 1961 | IGCM_debug_PopStack "IGCM_sys_rebuild" |
---|
[622] | 1962 | } |
---|
| 1963 | |
---|
[811] | 1964 | #D-#================================================== |
---|
| 1965 | #D-function IGCM_sys_rebuild_station |
---|
[912] | 1966 | #D-* Purpose: rebuild parallel files describing station |
---|
[811] | 1967 | #D-* Examples: |
---|
| 1968 | #D- |
---|
[697] | 1969 | function IGCM_sys_rebuild_station { |
---|
[1057] | 1970 | IGCM_debug_PushStack "IGCM_sys_rebuild_station" $@ |
---|
[697] | 1971 | typeset i list_opt file_in file_out prefix_invert list_invert |
---|
| 1972 | if ( $DEBUG_sys ) ; then |
---|
| 1973 | echo "IGCM_sys_rebuild_station :" $@ |
---|
| 1974 | fi |
---|
| 1975 | list_opt=$@ |
---|
| 1976 | |
---|
[773] | 1977 | # Invert Axis : t,x -> x,t |
---|
[697] | 1978 | # t,pres,x -> x,t,pres |
---|
| 1979 | # So that we can concatenate along x |
---|
| 1980 | i=0 |
---|
| 1981 | for file_in in ${list_opt} ; do |
---|
| 1982 | (( i = i + 1)) |
---|
| 1983 | [ ${i} = 1 ] && file_out=${file_in} && continue |
---|
[1046] | 1984 | # detect time counter and do the job only if present |
---|
| 1985 | var_unlim=$(ncdump -h ${file_in} | grep UNLIMITED | cut -d ' ' -f 1) |
---|
| 1986 | if [ X${var_unlim} = Xtime_counter ] ; then |
---|
| 1987 | prefix_invert=$( basename ${file_in} .nc ) |
---|
| 1988 | IGCM_sys_ncpdq -a x,time_counter -a x,time_counter,presnivs ${file_in} ${prefix_invert}_xt.nc |
---|
| 1989 | list_invert[${#list_invert[*]}]=${prefix_invert}_xt.nc |
---|
| 1990 | fi |
---|
[697] | 1991 | done |
---|
| 1992 | |
---|
| 1993 | # Concatenate |
---|
| 1994 | IGCM_sys_ncrcat ${list_invert[*]} histstn_xt.nc |
---|
| 1995 | |
---|
| 1996 | # Re-ivert file |
---|
| 1997 | IGCM_sys_ncpdq -a time_counter,x -a time_counter,presnivs,x histstn_xt.nc ${file_out} |
---|
| 1998 | |
---|
[922] | 1999 | # Station re-ordering is too expansive to be run within libIGCM |
---|
[697] | 2000 | # This is due to (ncpdq - nrcat - ncpdq) I/O sequence. |
---|
| 2001 | # This re-ordering must be done "in memory" by the cmorization process |
---|
| 2002 | # Anyway this is the best sequence using (ncpdq - nrcat - ncpdq) |
---|
| 2003 | # BEGIN reordering |
---|
| 2004 | |
---|
| 2005 | # Only LMDZ text output contains the exact ordering of the station. |
---|
| 2006 | # We isolate this in the code below: |
---|
| 2007 | # 0 38 -157.5000000000000 70.98591549295774 |
---|
| 2008 | # 0 54 27.49999999999999 67.18309859154928 |
---|
| 2009 | # 0 56 -62.50000000000001 82.39436619718309 |
---|
| 2010 | # 0 79 12.49999999999999 78.59154929577466 |
---|
| 2011 | # 0 116 -165.0000000000000 76.05633802816901 |
---|
| 2012 | # 0 117 130.0000000000000 70.98591549295774 |
---|
| 2013 | # 0 118 110.0000000000000 87.46478873239437 |
---|
| 2014 | # 1 40 4.999999999999995 51.97183098591550 |
---|
[1056] | 2015 | |
---|
[697] | 2016 | # typeset iStation iProc list_opt file_in file_out prefix_invert |
---|
| 2017 | # typeset -Z4 j4 |
---|
| 2018 | # typeset -Z3 j3 |
---|
| 2019 | |
---|
| 2020 | # unset list_opt |
---|
| 2021 | # set +A list_opt $@ |
---|
| 2022 | |
---|
| 2023 | # Filename after rebuild |
---|
| 2024 | # file_out=${list_opt[0]} |
---|
| 2025 | # Prefix of output files |
---|
| 2026 | # prefix_invert=$( basename ${file_out} .nc ) |
---|
| 2027 | # Number of procs |
---|
| 2028 | # num_proc=$( grep -i mpi_size ${PREFIX}_${Exe_Output} | wc -l ) |
---|
| 2029 | |
---|
| 2030 | # iProc=0 |
---|
| 2031 | # while [ ${iProc} -lt ${num_proc} ] ; do |
---|
| 2032 | # Array containing Station as a number |
---|
| 2033 | # unset proc_stn |
---|
[912] | 2034 | # set +A proc_stn $( grep "iophy_mpi rank ip lon lat $iProc" ${PREFIX}_${Exe_Output} | sed -e "s/iophy_mpi rank ip lon lat //g" | gawk ' {print $2}' ) |
---|
[697] | 2035 | # Number of stations produced by processor proc |
---|
| 2036 | # stationLast=${#proc_stn[*]} |
---|
| 2037 | # Proc number on 4 digits |
---|
| 2038 | # j4=${iProc} |
---|
| 2039 | # Init |
---|
| 2040 | # iStation=0 |
---|
| 2041 | # while [ ${iStation} -lt ${stationLast} ] ; do |
---|
| 2042 | # Station number on 3 digits |
---|
| 2043 | # j3=${proc_stn[${iStation}]} |
---|
| 2044 | # Extract station |
---|
[773] | 2045 | # Invert Axis : t,x -> x,t |
---|
[697] | 2046 | # t,pres,x -> x,t,pres |
---|
| 2047 | # So that we can concatenate along x |
---|
| 2048 | # IGCM_sys_ncpdq -a x,time_counter -a x,time_counter,presnivs -d x,$iStation,$iStation ${prefix_invert}_${j4}.nc ${prefix_invert}_stn_${j3}.nc |
---|
| 2049 | # (( iStation = iStation + 1 )) |
---|
| 2050 | # done |
---|
| 2051 | # (( iProc = iProc + 1 )) |
---|
| 2052 | # done |
---|
| 2053 | |
---|
| 2054 | # Concatenate all station along x |
---|
| 2055 | # IGCM_sys_ncrcat ${prefix_invert}_stn_???.nc ${prefix_invert}_xt.nc |
---|
| 2056 | |
---|
| 2057 | # Re-invert file |
---|
| 2058 | # IGCM_sys_ncpdq -a time_counter,x -a time_counter,presnivs,x ${prefix_invert}_xt.nc ${file_out} |
---|
| 2059 | |
---|
| 2060 | # END reordering |
---|
| 2061 | |
---|
| 2062 | IGCM_debug_PopStack "IGCM_sys_rebuild_station" |
---|
| 2063 | } |
---|
| 2064 | |
---|
[622] | 2065 | ############################################################ |
---|
| 2066 | # Activate Running Environnment Variables |
---|
| 2067 | |
---|
[811] | 2068 | #D-#================================================== |
---|
| 2069 | #D-function IGCM_sys_desactiv_variables |
---|
| 2070 | #D-* Purpose: set environement variables prior to execution |
---|
| 2071 | #D-* Examples: |
---|
| 2072 | #D- |
---|
[622] | 2073 | function IGCM_sys_activ_variables { |
---|
[623] | 2074 | IGCM_debug_PushStack "IGCM_sys_activ_variables" |
---|
| 2075 | if ( $DEBUG_sys ) ; then |
---|
| 2076 | echo "IGCM_sys_activ_variables" |
---|
| 2077 | fi |
---|
[622] | 2078 | |
---|
[811] | 2079 | # -------------------------------------------------------------------- |
---|
| 2080 | #D- MPI specifications |
---|
| 2081 | # -------------------------------------------------------------------- |
---|
| 2082 | |
---|
| 2083 | # -------------------------------------------------------------------- |
---|
| 2084 | #D- Other specifications |
---|
| 2085 | # -------------------------------------------------------------------- |
---|
| 2086 | |
---|
[623] | 2087 | ulimit -s unlimited |
---|
[622] | 2088 | |
---|
[623] | 2089 | IGCM_debug_PopStack "IGCM_sys_activ_variables" |
---|
[622] | 2090 | } |
---|
| 2091 | |
---|
| 2092 | ############################################################ |
---|
| 2093 | # Desactivate Running Environnment Variables |
---|
| 2094 | |
---|
[811] | 2095 | #D-#================================================== |
---|
| 2096 | #D-function IGCM_sys_desactiv_variables |
---|
| 2097 | #D-* Purpose: unset environement variables after execution |
---|
| 2098 | #D-* Examples: |
---|
| 2099 | #D- |
---|
[622] | 2100 | function IGCM_sys_desactiv_variables { |
---|
[623] | 2101 | IGCM_debug_PushStack "IGCM_sys_desactiv_variables" |
---|
| 2102 | if ( $DEBUG_sys ) ; then |
---|
| 2103 | echo "IGCM_sys_desactiv_variables" |
---|
| 2104 | fi |
---|
[811] | 2105 | # -------------------------------------------------------------------- |
---|
| 2106 | #D- MPI specifications |
---|
| 2107 | # -------------------------------------------------------------------- |
---|
| 2108 | |
---|
| 2109 | # -------------------------------------------------------------------- |
---|
| 2110 | #D- Other specifications |
---|
| 2111 | # -------------------------------------------------------------------- |
---|
| 2112 | |
---|
[623] | 2113 | IGCM_debug_PopStack "IGCM_sys_desactiv_variables" |
---|
[622] | 2114 | } |
---|
| 2115 | |
---|
[623] | 2116 | ############################################################ |
---|
| 2117 | # Build MPI/OMP scripts run file (dummy function) |
---|
[622] | 2118 | |
---|
[811] | 2119 | #D-#================================================== |
---|
| 2120 | #D-function IGCM_sys_build_run_file |
---|
| 2121 | #D-* Purpose: build run file (deprecated) |
---|
| 2122 | #D-* Examples: |
---|
| 2123 | #D- |
---|
[622] | 2124 | function IGCM_sys_build_run_file { |
---|
| 2125 | |
---|
[811] | 2126 | IGCM_debug_Print 3 " dummy function : IGCM_sys_build_run_file " |
---|
[622] | 2127 | |
---|
| 2128 | } |
---|
| 2129 | |
---|
| 2130 | ############################################################ |
---|
| 2131 | # Build MPI/OMP scripts |
---|
[811] | 2132 | |
---|
| 2133 | #D-#================================================== |
---|
| 2134 | #D-function IGCM_sys_build_execution_scripts |
---|
| 2135 | #D-* Purpose: build execution scripts to be launch by ${HOST_MPIRUN_COMMAND} |
---|
| 2136 | #D-* Examples: |
---|
| 2137 | #D- |
---|
[623] | 2138 | function IGCM_sys_build_execution_scripts |
---|
[622] | 2139 | { |
---|
[623] | 2140 | IGCM_debug_PushStack "IGCM_sys_build_execution_scripts" $@ |
---|
| 2141 | if ( $DEBUG_sys ) ; then |
---|
| 2142 | echo "IGCM_sys_build_execution_scripts " $@ |
---|
| 2143 | fi |
---|
[622] | 2144 | |
---|
[623] | 2145 | EXECUTION=${HOST_MPIRUN_COMMAND} |
---|
[622] | 2146 | |
---|
[1078] | 2147 | # MPMD mode |
---|
[623] | 2148 | if ( ${OK_PARA_MPMD} ) ; then |
---|
[622] | 2149 | |
---|
[1078] | 2150 | # Only MPI (MPMD) |
---|
| 2151 | if ( ! ${OK_PARA_OMP} ) ; then |
---|
[622] | 2152 | |
---|
[1078] | 2153 | if [ -f run_file ] ; then |
---|
| 2154 | IGCM_sys_Rm -f run_file |
---|
| 2155 | fi |
---|
| 2156 | touch run_file |
---|
[622] | 2157 | |
---|
[1078] | 2158 | # Build run_file |
---|
[622] | 2159 | |
---|
[1078] | 2160 | # First loop on the components for the coupler ie oasis (only if oasis3) |
---|
| 2161 | # the coupler ie oasis3 must be the first one |
---|
| 2162 | for comp in ${config_ListOfComponents[*]} ; do |
---|
[622] | 2163 | |
---|
[1078] | 2164 | eval ExeNameIn=\${config_Executable_${comp}[0]} |
---|
| 2165 | eval ExeNameOut=\${config_Executable_${comp}[1]} |
---|
[622] | 2166 | |
---|
[1078] | 2167 | # for CPL component only |
---|
| 2168 | if [ "X${comp}" = "XCPL" ] && [ "X${ExeNameOut}" != X\"\" ] ; then |
---|
[1000] | 2169 | |
---|
[1078] | 2170 | eval comp_proc_mpi_loc=\${${comp}_PROC_MPI} |
---|
| 2171 | eval comp_proc_omp_loc=\${${comp}_PROC_OMP} |
---|
| 2172 | echo "${comp_proc_mpi_loc} ./${ExeNameOut}" >> run_file |
---|
| 2173 | fi |
---|
| 2174 | done |
---|
[622] | 2175 | |
---|
[1078] | 2176 | # Then second loop on the components |
---|
| 2177 | for comp in ${config_ListOfComponents[*]} ; do |
---|
[622] | 2178 | |
---|
[1078] | 2179 | eval ExeNameIn=\${config_Executable_${comp}[0]} |
---|
| 2180 | eval ExeNameOut=\${config_Executable_${comp}[1]} |
---|
[622] | 2181 | |
---|
[1078] | 2182 | # Only if we really have an executable for the component and not the coupler ie oasis: |
---|
| 2183 | if ( [ "X${ExeNameOut}" != X\"\" ] && [ "X${comp}" != "XCPL" ] ) ; then |
---|
[622] | 2184 | |
---|
[1078] | 2185 | eval comp_proc_mpi_loc=\${${comp}_PROC_MPI} |
---|
| 2186 | eval comp_proc_omp_loc=\${${comp}_PROC_OMP} |
---|
| 2187 | echo "${comp_proc_mpi_loc} ./${ExeNameOut}" >> run_file |
---|
| 2188 | fi |
---|
| 2189 | done |
---|
[622] | 2190 | |
---|
[1078] | 2191 | EXECUTION="${HOST_MPIRUN_COMMAND} -f ./run_file" |
---|
[622] | 2192 | |
---|
[1078] | 2193 | IGCM_sys_Chmod u+x run_file |
---|
| 2194 | if ( $DEBUG_sys ) ; then |
---|
| 2195 | echo "run_file contains : " |
---|
| 2196 | cat run_file |
---|
| 2197 | fi |
---|
[622] | 2198 | |
---|
[1078] | 2199 | # MPI-OpenMP (MPMD) |
---|
| 2200 | else |
---|
[622] | 2201 | |
---|
[1078] | 2202 | # Use of mpirun instead of ccc_mprun |
---|
| 2203 | EXECUTION="time mpirun" |
---|
[622] | 2204 | |
---|
[1078] | 2205 | # Hosts treatment |
---|
| 2206 | ${EXECUTION} hostname | sort | uniq > hosts.tmp |
---|
[622] | 2207 | |
---|
[1078] | 2208 | i=0 |
---|
| 2209 | rm -f hosts rankfile |
---|
| 2210 | IGCM_debug_Print 1 "sys Curie, Hosts available :" |
---|
| 2211 | for nodes in `cat hosts.tmp` |
---|
| 2212 | do |
---|
| 2213 | host[$i]=$nodes |
---|
| 2214 | echo "${host[$i]}" >> hosts |
---|
| 2215 | IGCM_debug_Print 1 ${host[$i]} |
---|
| 2216 | i=$((i+1)) |
---|
| 2217 | done |
---|
| 2218 | rm -f hosts.tmp |
---|
[1000] | 2219 | |
---|
[1078] | 2220 | listnodes=${host[*]} |
---|
[1000] | 2221 | |
---|
[1078] | 2222 | EXECUTION="${EXECUTION} -hostfile hosts -rankfile rankfile" |
---|
[1000] | 2223 | |
---|
[1078] | 2224 | # Initialisation |
---|
| 2225 | rank=0 |
---|
| 2226 | current_core=0 |
---|
| 2227 | core_per_node=16 |
---|
| 2228 | init_exec=n |
---|
[1000] | 2229 | |
---|
[1078] | 2230 | # Loop on the components |
---|
| 2231 | for comp in ${config_ListOfComponents[*]} ; do |
---|
[1000] | 2232 | |
---|
[1078] | 2233 | eval ExeNameIn=\${config_Executable_${comp}[0]} |
---|
| 2234 | eval ExeNameOut=\${config_Executable_${comp}[1]} |
---|
[1000] | 2235 | |
---|
[1078] | 2236 | # Not possible if oasis has an executable (i.e old version of oasis3) |
---|
| 2237 | if ( [ "X${ExeNameOut}" != X\"\" ] && [ "X${comp}" = "XCPL" ] ) ; then |
---|
| 2238 | IGCM_debug_Exit "ERROR MPMD with hybrid MPI-OpenMP is not available with oasis3 version" |
---|
| 2239 | IGCM_debug_Print 2 "Only available with oasis3-MCT version coupler" |
---|
| 2240 | IGCM_debug_Verif_Exit |
---|
| 2241 | fi |
---|
[1000] | 2242 | |
---|
[1078] | 2243 | # Only if we really have an executable for the component : |
---|
| 2244 | if [ "X${ExeNameOut}" != X\"\" ] ; then |
---|
[1000] | 2245 | |
---|
[1078] | 2246 | eval comp_proc_mpi_loc=\${${comp}_PROC_MPI} |
---|
| 2247 | eval comp_proc_omp_loc=\${${comp}_PROC_OMP} |
---|
[1000] | 2248 | |
---|
[1078] | 2249 | echo "#!/bin/ksh" > script_${ExeNameOut}.ksh |
---|
| 2250 | echo "" >> script_${ExeNameOut}.ksh |
---|
| 2251 | if [ ${comp_proc_omp_loc} -gt 1 ] ; then |
---|
| 2252 | |
---|
| 2253 | # Check if the number of threads is correct |
---|
| 2254 | case ${comp_proc_omp_loc} in |
---|
| 2255 | 2|4|8|16) |
---|
| 2256 | IGCM_debug_Print 1 "You run ${ExeNameOut} on ${comp_proc_omp_loc} OMP threads" |
---|
| 2257 | ;; |
---|
| 2258 | *) |
---|
| 2259 | IGCM_debug_Exit "ERROR with OMP parameters !" |
---|
| 2260 | IGCM_debug_Print 2 "${comp_proc_omp_loc} is not possible as number of OMP threads" |
---|
| 2261 | IGCM_debug_Print 2 "Only 2,4,8,16 as number of OMP threads are possible " |
---|
| 2262 | IGCM_debug_Verif_Exit |
---|
| 2263 | ;; |
---|
| 2264 | esac |
---|
| 2265 | echo "export KMP_STACKSIZE=3g" >> script_${ExeNameOut}.ksh |
---|
| 2266 | echo "export KMP_LIBRARY=turnaround" >> script_${ExeNameOut}.ksh |
---|
| 2267 | echo "export MKL_SERIAL=YES" >> script_${ExeNameOut}.ksh |
---|
| 2268 | echo "OMP_NUM_THREADS=${comp_proc_omp_loc}" >> script_${ExeNameOut}.ksh |
---|
| 2269 | fi |
---|
| 2270 | #echo "(( MYMPIRANK = OMPI_COMM_WORLD_RANK - ${start_num})) " >> script_${ExeNameOut}.ksh |
---|
| 2271 | #echo "./${ExeNameOut} > out_${ExeNameOut}.out.\${MYMPIRANK} 2>out_${ExeNameOut}.err.\${MYMPIRANK}" >> script_${ExeNameOut}.ksh |
---|
| 2272 | echo "./${ExeNameOut}" >> script_${ExeNameOut}.ksh |
---|
| 2273 | IGCM_sys_Chmod u+x script_${ExeNameOut}.ksh |
---|
| 2274 | |
---|
| 2275 | if [ ${init_exec} = y ] ; then |
---|
| 2276 | EXECUTION="${EXECUTION} : -np ${comp_proc_mpi_loc} ./script_${ExeNameOut}.ksh" |
---|
| 2277 | else |
---|
| 2278 | EXECUTION="${EXECUTION} -np ${comp_proc_mpi_loc} ./script_${ExeNameOut}.ksh" |
---|
| 2279 | init_exec=y |
---|
| 2280 | fi |
---|
| 2281 | |
---|
[1000] | 2282 | # Build rankfile : method used to assign cores and nodes for the MPI process |
---|
[1078] | 2283 | # Ex : |
---|
| 2284 | #rank 0=curie5296 slot=0,1,2,3 |
---|
[1000] | 2285 | #rank 1=curie5296 slot=4,5,6,7 |
---|
| 2286 | # Example of final command : |
---|
| 2287 | # mpirun -hostfile hosts -rankfile rankfile -np 27 ./script_lmdz.x.ksh : -np 5 ./script_opa.xx.ksh |
---|
| 2288 | # with script_lmdz.x.ksh : |
---|
| 2289 | # #!/bin/ksh |
---|
| 2290 | #export KMP_STACKSIZE=3g |
---|
| 2291 | #export KMP_LIBRARY=turnaround |
---|
| 2292 | #export MKL_SERIAL=YES |
---|
| 2293 | #OMP_NUM_THREADS=4 |
---|
| 2294 | #./lmdz.x |
---|
| 2295 | # |
---|
| 2296 | |
---|
[1078] | 2297 | for nb_proc_mpi in `seq 0 $(($comp_proc_mpi_loc-1))`; do |
---|
| 2298 | (( index_host = current_core / core_per_node )) |
---|
| 2299 | host_value=${host[${index_host}]} |
---|
| 2300 | (( slot = current_core % core_per_node )) |
---|
| 2301 | virg="," |
---|
| 2302 | string_final="" |
---|
| 2303 | for index in `seq $slot $(($slot+$comp_proc_omp_loc-1))`; do |
---|
| 2304 | string=$index$virg |
---|
| 2305 | string_final=$string_final$string |
---|
| 2306 | done |
---|
| 2307 | string_final=$( echo $string_final | sed "s/.$//" ) |
---|
| 2308 | echo "rank $rank=$host_value slot=$string_final" >> rankfile |
---|
| 2309 | (( rank = rank + 1 )) |
---|
| 2310 | (( current_core = current_core + comp_proc_omp_loc )) |
---|
| 2311 | done |
---|
| 2312 | fi |
---|
[1000] | 2313 | |
---|
[1078] | 2314 | done |
---|
| 2315 | fi |
---|
[1000] | 2316 | |
---|
[1078] | 2317 | # Only one executable (SPMD mode). |
---|
| 2318 | else |
---|
[1000] | 2319 | |
---|
[622] | 2320 | for comp in ${config_ListOfComponents[*]} ; do |
---|
| 2321 | |
---|
[685] | 2322 | # Only if we really have an executable for the component : |
---|
[623] | 2323 | eval ExeNameOut=\${config_Executable_${comp}[1]} |
---|
[685] | 2324 | if ( [ "X${ExeNameOut}" != X\"\" ] && [ "X${ExeNameOut}" != "Xinca.dat" ] ) ; then |
---|
[622] | 2325 | |
---|
[685] | 2326 | echo "#!/bin/ksh" > script_${ExeNameOut}.ksh |
---|
| 2327 | echo "" >> script_${ExeNameOut}.ksh |
---|
| 2328 | IGCM_sys_Chmod u+x script_${ExeNameOut}.ksh |
---|
| 2329 | |
---|
| 2330 | if ( ${OK_PARA_OMP} ) ; then |
---|
| 2331 | eval comp_proc_omp_loc=\${${comp}_PROC_OMP} |
---|
| 2332 | echo "" >> script_${ExeNameOut}.ksh |
---|
| 2333 | echo "export KMP_STACKSIZE=3g" >> script_${ExeNameOut}.ksh |
---|
| 2334 | echo "export KMP_LIBRARY=turnaround" >> script_${ExeNameOut}.ksh |
---|
| 2335 | echo "export MKL_SERIAL=YES" >> script_${ExeNameOut}.ksh |
---|
| 2336 | echo "OMP_NUM_THREADS=${comp_proc_omp_loc}" >> script_${ExeNameOut}.ksh |
---|
| 2337 | fi |
---|
| 2338 | |
---|
| 2339 | if ( ${OK_PARA_MPI} ) ; then |
---|
[623] | 2340 | eval comp_proc_mpi_loc=\${${comp}_PROC_MPI} |
---|
[685] | 2341 | # Default : ccc_mprun used if nb_proc gt 1 |
---|
| 2342 | # to have out/err per process on different files |
---|
| 2343 | # echo "./${ExeNameOut} > out_${ExeNameOut}.out.\${SLURM_PROCID} 2>out_${ExeNameOut}.err.\${SLURM_PROCID}" >> script_${ExeNameOut}.ksh |
---|
| 2344 | echo "./${ExeNameOut}" >> script_${ExeNameOut}.ksh |
---|
| 2345 | EXECUTION="${HOST_MPIRUN_COMMAND} -n ${comp_proc_mpi_loc} ./script_${ExeNameOut}.ksh" |
---|
[623] | 2346 | else |
---|
[685] | 2347 | # Default : ccc_mprun is NOT used if nb_proc eq 1 |
---|
| 2348 | # to have out/err per process on different files |
---|
| 2349 | # echo "./${ExeNameOut} > out_${ExeNameOut}.out 2>out_${ExeNameOut}.err" >> script_${ExeNameOut}.ksh |
---|
| 2350 | echo "./${ExeNameOut}" >> script_${ExeNameOut}.ksh |
---|
| 2351 | EXECUTION="/usr/bin/time ./script_${ExeNameOut}.ksh" |
---|
[622] | 2352 | fi |
---|
[685] | 2353 | |
---|
| 2354 | IGCM_debug_Print 1 "sys Curie : script_${ExeNameOut}.ksh contains" |
---|
| 2355 | cat script_${ExeNameOut}.ksh |
---|
| 2356 | |
---|
[623] | 2357 | fi |
---|
[622] | 2358 | |
---|
| 2359 | done |
---|
| 2360 | |
---|
[623] | 2361 | fi |
---|
[622] | 2362 | |
---|
[623] | 2363 | IGCM_debug_Print 1 "sys Curie : execution command is " |
---|
| 2364 | IGCM_debug_Print 1 "$EXECUTION" |
---|
[622] | 2365 | |
---|
[623] | 2366 | IGCM_debug_PopStack "IGCM_sys_build_execution_scripts" |
---|
[622] | 2367 | } |
---|
| 2368 | |
---|
[933] | 2369 | #D-#================================================== |
---|
| 2370 | #D-function IGCM_sys_check_path |
---|
| 2371 | #D-* Purpose: check that RUN_DIR_PATH that will be removed on some machine |
---|
| 2372 | #D-* do not point to an important use directory. Stop immediately in that case. |
---|
| 2373 | #D-* Examples: |
---|
| 2374 | #D- |
---|
| 2375 | function IGCM_sys_check_path { |
---|
| 2376 | IGCM_debug_PushStack "IGCM_sys_check_path" |
---|
| 2377 | if ( $DEBUG_sys ) ; then |
---|
| 2378 | echo "IGCM_sys_check_path" |
---|
| 2379 | fi |
---|
[811] | 2380 | |
---|
[933] | 2381 | if ( [ X${RUN_DIR_PATH} = X${HOME} ] || [ X${RUN_DIR_PATH} = X${WORKDIR} ] || [ X${RUN_DIR_PATH} = X${SCRATCHDIR} ] || [ X${RUN_DIR_PATH} = X${CCCWORKDIR} ] || [ X${RUN_DIR_PATH} = X${CCCSTOREDIR} ] ) ; then |
---|
| 2382 | IGCM_debug_Print 1 "Variable RUN_DIR_PATH is pointing to an important directory : ${RUN_DIR_PATH}" |
---|
| 2383 | IGCM_debug_Print 1 "Please check the RUN_DIR_PATH definition in your Job : Job_${config_UserChoices_JobName}" |
---|
[936] | 2384 | IGCM_debug_Exit "This will stop the job" |
---|
[933] | 2385 | fi |
---|
| 2386 | IGCM_debug_PopStack "IGCM_sys_check_path" |
---|
| 2387 | } |
---|
| 2388 | |
---|
[811] | 2389 | #D-#================================================== |
---|
| 2390 | #D-function IGCM_sys_check_quota |
---|
| 2391 | #D-* Purpose: check user quota. Stop the simulation if quota above 90% |
---|
| 2392 | #D-* Examples: |
---|
| 2393 | #D- |
---|
[714] | 2394 | function IGCM_sys_check_quota { |
---|
[776] | 2395 | IGCM_debug_PushStack "IGCM_sys_check_quota" |
---|
| 2396 | if ( $DEBUG_sys ) ; then |
---|
| 2397 | echo "IGCM_sys_check_quota" |
---|
| 2398 | fi |
---|
| 2399 | # Limit of quota (in %) |
---|
| 2400 | limit_quota=90 |
---|
| 2401 | |
---|
| 2402 | # Check of the volume |
---|
[912] | 2403 | volume_quota=$(ccc_quota | grep ' scratch' | gawk '{print $2}') |
---|
| 2404 | volume_avail=$(ccc_quota | grep ' scratch' | gawk '{print $3}') |
---|
[776] | 2405 | |
---|
| 2406 | if ( [ ! X${volume_quota} = X ] && [ ! ${volume_quota} = "-" ] ) ; then |
---|
| 2407 | |
---|
| 2408 | unit_avail=${volume_avail: -1} |
---|
| 2409 | unit_quota=${volume_quota: -1} |
---|
| 2410 | |
---|
| 2411 | if [ "${unit_quota}" = "*" ] ; then |
---|
[811] | 2412 | IGCM_debug_Print 1 "Please, check your quota of volume on scratch" |
---|
| 2413 | IGCM_debug_Print 1 "More than 100% of your quota is used" |
---|
| 2414 | IGCM_debug_Print 1 "Use the ccc_quota command to check" |
---|
| 2415 | IGCM_debug_Print 1 "You must have more than 10% available to run" |
---|
| 2416 | IGCM_debug_Exit "Not enough space to run ! STOP HERE" |
---|
| 2417 | IGCM_debug_Verif_Exit |
---|
[714] | 2418 | fi |
---|
[776] | 2419 | |
---|
| 2420 | temp_avail=${volume_avail%%${volume_avail: -1}*} |
---|
| 2421 | temp_quota=${volume_quota%%${volume_quota: -1}*} |
---|
| 2422 | |
---|
| 2423 | if [ ! ${unit_avail} = ${unit_quota} ] ; then |
---|
| 2424 | |
---|
| 2425 | # Convertion |
---|
| 2426 | if [ ${volume_avail: -1} = "T" ] ; then |
---|
| 2427 | (( temp_avail = temp_avail * 1000000000000 )) |
---|
| 2428 | elif [ ${volume_avail: -1} = "G" ] ; then |
---|
| 2429 | (( temp_avail = temp_avail * 1000000000 )) |
---|
| 2430 | elif [ ${volume_avail: -1} = "M" ] ; then |
---|
| 2431 | (( temp_avail = temp_avail * 1000000 )) |
---|
| 2432 | elif [ ${volume_avail: -1} = "k" ] ; then |
---|
| 2433 | (( temp_avail = temp_avail * 1000 )) |
---|
| 2434 | else |
---|
| 2435 | (( temp_avail = volume_avail )) |
---|
| 2436 | fi |
---|
| 2437 | if [ ${volume_quota: -1} = "T" ] ; then |
---|
| 2438 | (( temp_quota = temp_quota * 1000000000000 )) |
---|
| 2439 | elif [ ${volume_quota: -1} = "G" ] ; then |
---|
| 2440 | (( temp_quota = temp_quota * 1000000000 )) |
---|
| 2441 | elif [ ${volume_quota: -1} = "M" ] ; then |
---|
| 2442 | (( temp_quota = temp_quota * 1000000 )) |
---|
| 2443 | elif [ ${volume_quota: -1} = "k" ] ; then |
---|
| 2444 | (( temp_quota = temp_quota * 1000 )) |
---|
| 2445 | else |
---|
| 2446 | (( temp_quota = volume_quota )) |
---|
| 2447 | fi |
---|
| 2448 | fi |
---|
| 2449 | |
---|
| 2450 | quota_volume=$(echo "scale=2 ; $temp_quota/$temp_avail*100" | bc) |
---|
| 2451 | # echo "volume ratio is " $quota_volume |
---|
| 2452 | |
---|
| 2453 | if [ ${quota_volume} -ge ${limit_quota} ] ; then |
---|
| 2454 | IGCM_debug_Print 1 "Please, check your quota of volume on scratch" |
---|
| 2455 | IGCM_debug_Print 1 "${quota_volume}% of your quota is used" |
---|
| 2456 | IGCM_debug_Print 1 "Use the ccc_quota command to check" |
---|
| 2457 | IGCM_debug_Print 1 "You must have more than 10% available to run" |
---|
| 2458 | IGCM_debug_Exit "Not enough space to run ! STOP HERE" |
---|
| 2459 | IGCM_debug_Verif_Exit |
---|
| 2460 | fi |
---|
| 2461 | |
---|
| 2462 | fi |
---|
| 2463 | |
---|
| 2464 | # Check of the number of inodes |
---|
| 2465 | |
---|
[912] | 2466 | inode_quota=$(ccc_quota | grep ' scratch' | gawk '{print $6}') |
---|
| 2467 | inode_avail=$(ccc_quota | grep ' scratch' | gawk '{print $7}') |
---|
[776] | 2468 | |
---|
| 2469 | if ( [ ! X${inode_quota} = X ] && [ ! ${inode_quota} = "-" ] ) ; then |
---|
| 2470 | |
---|
| 2471 | unit_avail=${inode_avail: -1} |
---|
| 2472 | unit_quota=${inode_quota: -1} |
---|
| 2473 | |
---|
| 2474 | if [ "${unit_quota}" = "*" ] ; then |
---|
[811] | 2475 | IGCM_debug_Print 1 "Please, check your quota of inode on scratch" |
---|
| 2476 | IGCM_debug_Print 1 "More than 100% of your quota is used" |
---|
| 2477 | IGCM_debug_Print 1 "Use the ccc_quota command to check" |
---|
| 2478 | IGCM_debug_Print 1 "You must have more than 10% available to run" |
---|
| 2479 | IGCM_debug_Exit "Not enough space to run ! STOP HERE" |
---|
| 2480 | IGCM_debug_Verif_Exit |
---|
[776] | 2481 | fi |
---|
| 2482 | |
---|
| 2483 | temp_avail=${inode_avail%%${inode_avail: -1}*} |
---|
| 2484 | temp_quota=${inode_quota%%${inode_quota: -1}*} |
---|
| 2485 | |
---|
| 2486 | if [ ! ${unit_avail} = ${unit_quota} ] ; then |
---|
| 2487 | |
---|
| 2488 | # Convertion |
---|
| 2489 | if [ ${inode_avail: -1} = "T" ] ; then |
---|
| 2490 | (( temp_avail = temp_avail * 1000000000000 )) |
---|
| 2491 | elif [ ${inode_avail: -1} = "G" ] ; then |
---|
| 2492 | (( temp_avail = temp_avail * 1000000000 )) |
---|
| 2493 | elif [ ${inode_avail: -1} = "M" ] ; then |
---|
| 2494 | (( temp_avail = temp_avail * 1000000 )) |
---|
| 2495 | elif [ ${inode_avail: -1} = "k" ] ; then |
---|
| 2496 | (( temp_avail = temp_avail * 1000 )) |
---|
| 2497 | else |
---|
| 2498 | (( temp_avail = inode_avail )) |
---|
| 2499 | fi |
---|
| 2500 | |
---|
| 2501 | if [ ${inode_quota: -1} = "T" ] ; then |
---|
| 2502 | (( temp_quota = temp_quota * 1000000000000 )) |
---|
| 2503 | elif [ ${inode_quota: -1} = "G" ] ; then |
---|
| 2504 | (( temp_quota = temp_quota * 1000000000 )) |
---|
| 2505 | elif [ ${inode_quota: -1} = "M" ] ; then |
---|
| 2506 | (( temp_quota = temp_quota * 1000000 )) |
---|
| 2507 | elif [ ${inode_quota: -1} = "k" ] ; then |
---|
| 2508 | (( temp_quota = temp_quota * 1000 )) |
---|
| 2509 | else |
---|
| 2510 | (( temp_quota = inode_quota )) |
---|
| 2511 | fi |
---|
| 2512 | fi |
---|
| 2513 | quota_inode=$(echo "scale=2 ; $temp_quota/$temp_avail*100" | bc) |
---|
| 2514 | # echo "inode ratio is " $quota_inode |
---|
| 2515 | |
---|
| 2516 | if [ ${quota_inode} -ge ${limit_quota} ] ; then |
---|
| 2517 | IGCM_debug_Print 1 "Please, check your quota of inode on scratch" |
---|
| 2518 | IGCM_debug_Print 1 "${quota_inode}% of your quota is used" |
---|
| 2519 | IGCM_debug_Print 1 "Use the ccc_quota command to check" |
---|
| 2520 | IGCM_debug_Print 1 "You must have more than 10% available to run" |
---|
| 2521 | IGCM_debug_Exit "Not enough space to run ! STOP HERE" |
---|
| 2522 | IGCM_debug_Verif_Exit |
---|
| 2523 | fi |
---|
| 2524 | fi |
---|
| 2525 | IGCM_debug_PopStack "IGCM_sys_check_quota" |
---|
[714] | 2526 | } |
---|
| 2527 | |
---|
[773] | 2528 | #D-#================================================== |
---|
[958] | 2529 | #D-function IGCM_sys_GetJobID |
---|
| 2530 | #D-* Purpose: Check if job_name is currently |
---|
| 2531 | #D- running or in queue |
---|
| 2532 | #D-* Examples: IGCM_sys_GetJobID ${JobName} ${TargetUsr} JobID |
---|
| 2533 | #D- |
---|
| 2534 | function IGCM_sys_GetJobID { |
---|
| 2535 | IGCM_debug_PushStack "IGCM_sys_GetJobID" |
---|
| 2536 | if ( $DEBUG_sys ) ; then |
---|
| 2537 | echo "IGCM_sys_GetJobID" |
---|
| 2538 | fi |
---|
| 2539 | |
---|
| 2540 | # With -f option, the full job name is given in the last column |
---|
| 2541 | ID=$( ccc_mstat -f -u $2 | \ |
---|
| 2542 | gawk -v JobName=$1 '( $NF ~ JobName ) { print $1 }' ) |
---|
| 2543 | |
---|
| 2544 | eval ${3}=${ID} |
---|
| 2545 | |
---|
| 2546 | IGCM_debug_PopStack "IGCM_sys_GetJobID" |
---|
| 2547 | } |
---|
| 2548 | |
---|
| 2549 | #D-#================================================== |
---|
[773] | 2550 | #D-function IGCM_sys_CountJobInQueue |
---|
| 2551 | #D-* Purpose: Check if job_name is currently |
---|
| 2552 | #D- running or in queue |
---|
| 2553 | #D-* Examples: IGCM_sys_CountJobInQueue ${JobName} NbRun |
---|
| 2554 | #D- |
---|
| 2555 | function IGCM_sys_CountJobInQueue { |
---|
| 2556 | IGCM_debug_PushStack "IGCM_sys_CountJobInQueue" |
---|
| 2557 | if ( $DEBUG_sys ) ; then |
---|
| 2558 | echo "IGCM_sys_CountJobInQueue" |
---|
| 2559 | fi |
---|
| 2560 | |
---|
| 2561 | #NbRun=$( ccc_mstat -f | grep -c ${JobName} ) |
---|
| 2562 | |
---|
| 2563 | # With -f option, the full job name is given in the last column |
---|
[834] | 2564 | NbRun=$( ccc_mstat -f | gawk -v JobName=$1 'BEGIN { x=0 } ( $NF ~ JobName ) { x=x+1 } END { print x }' ) |
---|
[773] | 2565 | |
---|
| 2566 | eval ${2}=${NbRun} |
---|
| 2567 | |
---|
| 2568 | IGCM_debug_PopStack "IGCM_sys_CountJobInQueue" |
---|
| 2569 | } |
---|
| 2570 | |
---|
[955] | 2571 | #D-#================================================== |
---|
| 2572 | #D-function IGCM_sys_ListJobInQueue |
---|
| 2573 | #D-* Purpose: Check if job_name is currently |
---|
| 2574 | #D- running or in queue |
---|
| 2575 | #D-* Examples: IGCM_sys_ListJobInQueue ${User} JobNameList |
---|
| 2576 | #D- |
---|
| 2577 | function IGCM_sys_ListJobInQueue { |
---|
| 2578 | IGCM_debug_PushStack "IGCM_sys_ListJobInQueue" |
---|
| 2579 | if ( $DEBUG_sys ) ; then |
---|
| 2580 | echo "IGCM_sys_ListJobInQueue" |
---|
| 2581 | fi |
---|
| 2582 | |
---|
| 2583 | # With -f option, the full job name is given in the last column |
---|
| 2584 | set -A JobList $( ccc_mstat -f | gawk -v User=$1 \ |
---|
| 2585 | '( $2 == User && \ |
---|
| 2586 | $NF != /TS/ && \ |
---|
| 2587 | $NF !~ /PACK/ && \ |
---|
| 2588 | $NF !~ /REBUILD/ && \ |
---|
| 2589 | $NF !~ /pack/ ) \ |
---|
| 2590 | { print $NF }' | sed -e "s/\(.*\)\.[0-9]*/\1/" ) |
---|
| 2591 | |
---|
| 2592 | eval set -A ${2} ${JobList[*]} |
---|
| 2593 | |
---|
| 2594 | IGCM_debug_PopStack "IGCM_sys_ListJobInQueue" |
---|
| 2595 | } |
---|
| 2596 | |
---|
[622] | 2597 | ############################################################## |
---|
| 2598 | # NCO OPERATOR |
---|
| 2599 | |
---|
[811] | 2600 | #D-#================================================== |
---|
| 2601 | #D-function IGCM_sys_ncap2 |
---|
| 2602 | #D-* Purpose: encapsulate ncap2 call so as to manage error code and retry |
---|
| 2603 | #D-* Examples: |
---|
| 2604 | #D- |
---|
[623] | 2605 | function IGCM_sys_ncap2 { |
---|
[1057] | 2606 | IGCM_debug_PushStack "IGCM_sys_ncap2" $@ |
---|
[623] | 2607 | if ( $DEBUG_sys ) ; then |
---|
| 2608 | echo "IGCM_sys_ncap2 :" $@ |
---|
| 2609 | fi |
---|
[713] | 2610 | |
---|
| 2611 | typeset NB_ESSAI DELAI status i |
---|
| 2612 | # number of tentative |
---|
| 2613 | NB_ESSAI=3 |
---|
| 2614 | # time delay between tentative |
---|
| 2615 | DELAI=2 |
---|
| 2616 | |
---|
| 2617 | i=0 |
---|
| 2618 | while [ $i -lt $NB_ESSAI ] ; do |
---|
[1091] | 2619 | ncap2 -C "$@" > /tmp/out_command.$$ 2>&1 |
---|
[713] | 2620 | status=$? |
---|
| 2621 | if [ ${status} -gt 0 ] ; then |
---|
| 2622 | IGCM_debug_Print 2 "IGCM_sys_ncap2 : error code ${status}" |
---|
[938] | 2623 | cat /tmp/out_command.$$ |
---|
| 2624 | \rm /tmp/out_command.$$ |
---|
[713] | 2625 | IGCM_debug_Print 2 "IGCM_sys_ncap2 : ${i}/${NB_ESSAI} sleep ${DELAI} seconds and try again." |
---|
[733] | 2626 | sleep $DELAI |
---|
[713] | 2627 | else |
---|
[938] | 2628 | \rm /tmp/out_command.$$ |
---|
[713] | 2629 | break |
---|
| 2630 | fi |
---|
| 2631 | (( i = i + 1 )) |
---|
| 2632 | done |
---|
| 2633 | |
---|
| 2634 | if [ ${status} -gt 0 ] ; then |
---|
[811] | 2635 | echo "IGCM_sys_ncap2 : ncap2 error" |
---|
| 2636 | IGCM_debug_Exit "ncap2" |
---|
[623] | 2637 | fi |
---|
| 2638 | |
---|
| 2639 | IGCM_debug_PopStack "IGCM_sys_ncap2" |
---|
| 2640 | } |
---|
| 2641 | |
---|
[811] | 2642 | #D-#================================================== |
---|
| 2643 | #D-function IGCM_sys_ncatted |
---|
| 2644 | #D-* Purpose: encapsulate ncatted call so as to manage error code and retry |
---|
| 2645 | #D-* Examples: |
---|
| 2646 | #D- |
---|
[622] | 2647 | function IGCM_sys_ncatted { |
---|
[1057] | 2648 | IGCM_debug_PushStack "IGCM_sys_ncatted" $@ |
---|
[623] | 2649 | if ( $DEBUG_sys ) ; then |
---|
| 2650 | echo "IGCM_sys_ncatted :" $@ |
---|
| 2651 | fi |
---|
[713] | 2652 | |
---|
| 2653 | typeset NB_ESSAI DELAI status i |
---|
| 2654 | # number of tentative |
---|
| 2655 | NB_ESSAI=3 |
---|
| 2656 | # time delay between tentative |
---|
| 2657 | DELAI=2 |
---|
| 2658 | |
---|
| 2659 | i=0 |
---|
| 2660 | while [ $i -lt $NB_ESSAI ] ; do |
---|
[938] | 2661 | ncatted "$@" > /tmp/out_command.$$ 2>&1 |
---|
[713] | 2662 | status=$? |
---|
| 2663 | if [ ${status} -gt 0 ] ; then |
---|
| 2664 | IGCM_debug_Print 2 "IGCM_sys_ncatted : error code ${status}" |
---|
[938] | 2665 | cat /tmp/out_command.$$ |
---|
| 2666 | \rm /tmp/out_command.$$ |
---|
[713] | 2667 | IGCM_debug_Print 2 "IGCM_sys_ncatted : ${i}/${NB_ESSAI} sleep ${DELAI} seconds and try again." |
---|
[733] | 2668 | sleep $DELAI |
---|
[713] | 2669 | else |
---|
[938] | 2670 | \rm /tmp/out_command.$$ |
---|
[713] | 2671 | break |
---|
| 2672 | fi |
---|
| 2673 | (( i = i + 1 )) |
---|
| 2674 | done |
---|
| 2675 | |
---|
| 2676 | if [ ${status} -gt 0 ] ; then |
---|
[811] | 2677 | echo "IGCM_sys_ncatted : ncatted error" |
---|
| 2678 | IGCM_debug_Exit "ncatted" |
---|
[623] | 2679 | fi |
---|
[622] | 2680 | |
---|
[623] | 2681 | IGCM_debug_PopStack "IGCM_sys_ncatted" |
---|
[622] | 2682 | } |
---|
| 2683 | |
---|
[811] | 2684 | #D-#================================================== |
---|
| 2685 | #D-function IGCM_sys_ncbo |
---|
| 2686 | #D-* Purpose: encapsulate ncbo call so as to manage error code and retry |
---|
| 2687 | #D-* Examples: |
---|
| 2688 | #D- |
---|
[622] | 2689 | function IGCM_sys_ncbo { |
---|
[1057] | 2690 | IGCM_debug_PushStack "IGCM_sys_ncbo" $@ |
---|
[623] | 2691 | if ( $DEBUG_sys ) ; then |
---|
| 2692 | echo "IGCM_sys_ncbo :" $@ |
---|
| 2693 | fi |
---|
[713] | 2694 | |
---|
| 2695 | typeset NB_ESSAI DELAI status i |
---|
| 2696 | # number of tentative |
---|
| 2697 | NB_ESSAI=3 |
---|
| 2698 | # time delay between tentative |
---|
| 2699 | DELAI=2 |
---|
| 2700 | |
---|
| 2701 | i=0 |
---|
| 2702 | while [ $i -lt $NB_ESSAI ] ; do |
---|
[1091] | 2703 | ncbo -C $@ > /tmp/out_command.$$ 2>&1 |
---|
[713] | 2704 | status=$? |
---|
| 2705 | if [ ${status} -gt 0 ] ; then |
---|
| 2706 | IGCM_debug_Print 2 "IGCM_sys_ncbo : error code ${status}" |
---|
[938] | 2707 | cat /tmp/out_command.$$ |
---|
| 2708 | \rm /tmp/out_command.$$ |
---|
[713] | 2709 | IGCM_debug_Print 2 "IGCM_sys_ncbo : ${i}/${NB_ESSAI} sleep ${DELAI} seconds and try again." |
---|
[733] | 2710 | sleep $DELAI |
---|
[713] | 2711 | else |
---|
[938] | 2712 | \rm /tmp/out_command.$$ |
---|
[713] | 2713 | break |
---|
| 2714 | fi |
---|
| 2715 | (( i = i + 1 )) |
---|
| 2716 | done |
---|
| 2717 | |
---|
| 2718 | if [ ${status} -gt 0 ] ; then |
---|
[811] | 2719 | echo "IGCM_sys_ncbo : ncbo error" |
---|
| 2720 | IGCM_debug_Exit "ncbo" |
---|
[623] | 2721 | fi |
---|
[622] | 2722 | |
---|
[623] | 2723 | IGCM_debug_PopStack "IGCM_sys_ncbo" |
---|
[622] | 2724 | } |
---|
| 2725 | |
---|
[811] | 2726 | #D-#================================================== |
---|
| 2727 | #D-function IGCM_sys_ncdif |
---|
| 2728 | #D-* Purpose: encapsulate ncdiff call so as to manage error code and retry |
---|
| 2729 | #D-* Examples: |
---|
| 2730 | #D- |
---|
[622] | 2731 | function IGCM_sys_ncdiff { |
---|
[1057] | 2732 | IGCM_debug_PushStack "IGCM_sys_ncdiff" $@ |
---|
[623] | 2733 | if ( $DEBUG_sys ) ; then |
---|
| 2734 | echo "IGCM_sys_ncdiff :" $@ |
---|
| 2735 | fi |
---|
[713] | 2736 | |
---|
| 2737 | typeset NB_ESSAI DELAI status i |
---|
| 2738 | # number of tentative |
---|
| 2739 | NB_ESSAI=3 |
---|
| 2740 | # time delay between tentative |
---|
| 2741 | DELAI=2 |
---|
| 2742 | |
---|
| 2743 | i=0 |
---|
| 2744 | while [ $i -lt $NB_ESSAI ] ; do |
---|
[1091] | 2745 | ncdiff -C $@ > /tmp/out_command.$$ 2>&1 |
---|
[713] | 2746 | status=$? |
---|
| 2747 | if [ ${status} -gt 0 ] ; then |
---|
| 2748 | IGCM_debug_Print 2 "IGCM_sys_ncdiff : error code ${status}" |
---|
[938] | 2749 | cat /tmp/out_command.$$ |
---|
| 2750 | \rm /tmp/out_command.$$ |
---|
[713] | 2751 | IGCM_debug_Print 2 "IGCM_sys_ncdiff : ${i}/${NB_ESSAI} sleep ${DELAI} seconds and try again." |
---|
[733] | 2752 | sleep $DELAI |
---|
[713] | 2753 | else |
---|
[938] | 2754 | \rm /tmp/out_command.$$ |
---|
[713] | 2755 | break |
---|
| 2756 | fi |
---|
| 2757 | (( i = i + 1 )) |
---|
| 2758 | done |
---|
| 2759 | |
---|
| 2760 | if [ ${status} -gt 0 ] ; then |
---|
[811] | 2761 | echo "IGCM_sys_ncdiff : ncdiff error" |
---|
| 2762 | IGCM_debug_Exit "ncdiff" |
---|
[623] | 2763 | fi |
---|
[622] | 2764 | |
---|
[623] | 2765 | IGCM_debug_PopStack "IGCM_sys_ncdiff" |
---|
[622] | 2766 | } |
---|
| 2767 | |
---|
[811] | 2768 | #D-#================================================== |
---|
| 2769 | #D-function IGCM_sys_ncea |
---|
| 2770 | #D-* Purpose: encapsulate ncea call so as to manage error code and retry |
---|
| 2771 | #D-* Examples: |
---|
| 2772 | #D- |
---|
[622] | 2773 | function IGCM_sys_ncea { |
---|
[1057] | 2774 | IGCM_debug_PushStack "IGCM_sys_ncea" $@ |
---|
[623] | 2775 | if ( $DEBUG_sys ) ; then |
---|
| 2776 | echo "IGCM_sys_ncea :" $@ |
---|
| 2777 | fi |
---|
[713] | 2778 | |
---|
| 2779 | typeset NB_ESSAI DELAI status i |
---|
| 2780 | # number of tentative |
---|
| 2781 | NB_ESSAI=3 |
---|
| 2782 | # time delay between tentative |
---|
| 2783 | DELAI=2 |
---|
| 2784 | |
---|
| 2785 | i=0 |
---|
| 2786 | while [ $i -lt $NB_ESSAI ] ; do |
---|
[1091] | 2787 | ncea -C $@ > /tmp/out_command.$$ 2>&1 |
---|
[713] | 2788 | status=$? |
---|
| 2789 | if [ ${status} -gt 0 ] ; then |
---|
| 2790 | IGCM_debug_Print 2 "IGCM_sys_ncea : error code ${status}" |
---|
[938] | 2791 | cat /tmp/out_command.$$ |
---|
| 2792 | \rm /tmp/out_command.$$ |
---|
[713] | 2793 | IGCM_debug_Print 2 "IGCM_sys_ncea : ${i}/${NB_ESSAI} sleep ${DELAI} seconds and try again." |
---|
[733] | 2794 | sleep $DELAI |
---|
[713] | 2795 | else |
---|
[938] | 2796 | \rm /tmp/out_command.$$ |
---|
[713] | 2797 | break |
---|
| 2798 | fi |
---|
| 2799 | (( i = i + 1 )) |
---|
| 2800 | done |
---|
| 2801 | |
---|
| 2802 | if [ ${status} -gt 0 ] ; then |
---|
[811] | 2803 | echo "IGCM_sys_ncea : ncea error" |
---|
| 2804 | IGCM_debug_Exit "ncea" |
---|
[623] | 2805 | fi |
---|
[622] | 2806 | |
---|
[623] | 2807 | IGCM_debug_PopStack "IGCM_sys_ncea" |
---|
[622] | 2808 | } |
---|
| 2809 | |
---|
[811] | 2810 | #D-#================================================== |
---|
| 2811 | #D-function IGCM_sys_ncecat |
---|
| 2812 | #D-* Purpose: encapsulate ncecat call so as to manage error code and retry |
---|
| 2813 | #D-* Examples: |
---|
| 2814 | #D- |
---|
[622] | 2815 | function IGCM_sys_ncecat { |
---|
[1057] | 2816 | IGCM_debug_PushStack "IGCM_sys_ncecat" $@ |
---|
[623] | 2817 | if ( $DEBUG_sys ) ; then |
---|
| 2818 | echo "IGCM_sys_ncecat :" $@ |
---|
| 2819 | fi |
---|
[713] | 2820 | |
---|
| 2821 | typeset NB_ESSAI DELAI status i |
---|
| 2822 | # number of tentative |
---|
| 2823 | NB_ESSAI=3 |
---|
| 2824 | # time delay between tentative |
---|
| 2825 | DELAI=2 |
---|
| 2826 | |
---|
| 2827 | i=0 |
---|
| 2828 | while [ $i -lt $NB_ESSAI ] ; do |
---|
[1091] | 2829 | ncecat -C $@ > /tmp/out_command.$$ 2>&1 |
---|
[713] | 2830 | status=$? |
---|
| 2831 | if [ ${status} -gt 0 ] ; then |
---|
| 2832 | IGCM_debug_Print 2 "IGCM_sys_ncecat : error code ${status}" |
---|
[938] | 2833 | cat /tmp/out_command.$$ |
---|
| 2834 | \rm /tmp/out_command.$$ |
---|
[713] | 2835 | IGCM_debug_Print 2 "IGCM_sys_ncecat : ${i}/${NB_ESSAI} sleep ${DELAI} seconds and try again." |
---|
[733] | 2836 | sleep $DELAI |
---|
[713] | 2837 | else |
---|
[938] | 2838 | \rm /tmp/out_command.$$ |
---|
[713] | 2839 | break |
---|
| 2840 | fi |
---|
| 2841 | (( i = i + 1 )) |
---|
| 2842 | done |
---|
| 2843 | |
---|
| 2844 | if [ ${status} -gt 0 ] ; then |
---|
[811] | 2845 | echo "IGCM_sys_ncecat : ncecat error" |
---|
| 2846 | IGCM_debug_Exit "ncecat" |
---|
[623] | 2847 | fi |
---|
[622] | 2848 | |
---|
[623] | 2849 | IGCM_debug_PopStack "IGCM_sys_ncecat" |
---|
[622] | 2850 | } |
---|
| 2851 | |
---|
[811] | 2852 | #D-#================================================== |
---|
| 2853 | #D-function IGCM_sys_ncflint |
---|
| 2854 | #D-* Purpose: encapsulate ncflint call so as to manage error code and retry |
---|
| 2855 | #D-* Examples: |
---|
| 2856 | #D- |
---|
[622] | 2857 | function IGCM_sys_ncflint { |
---|
[1057] | 2858 | IGCM_debug_PushStack "IGCM_sys_ncflint" $@ |
---|
[623] | 2859 | if ( $DEBUG_sys ) ; then |
---|
| 2860 | echo "IGCM_sys_ncflint :" $@ |
---|
| 2861 | fi |
---|
[713] | 2862 | |
---|
| 2863 | typeset NB_ESSAI DELAI status i |
---|
| 2864 | # number of tentative |
---|
| 2865 | NB_ESSAI=3 |
---|
| 2866 | # time delay between tentative |
---|
| 2867 | DELAI=2 |
---|
| 2868 | |
---|
| 2869 | i=0 |
---|
| 2870 | while [ $i -lt $NB_ESSAI ] ; do |
---|
[1091] | 2871 | ncflint -C $@ > /tmp/out_command.$$ 2>&1 |
---|
[713] | 2872 | status=$? |
---|
| 2873 | if [ ${status} -gt 0 ] ; then |
---|
| 2874 | IGCM_debug_Print 2 "IGCM_sys_ncflint : error code ${status}" |
---|
[938] | 2875 | cat /tmp/out_command.$$ |
---|
| 2876 | \rm /tmp/out_command.$$ |
---|
[713] | 2877 | IGCM_debug_Print 2 "IGCM_sys_ncflint : ${i}/${NB_ESSAI} sleep ${DELAI} seconds and try again." |
---|
[733] | 2878 | sleep $DELAI |
---|
[713] | 2879 | else |
---|
[938] | 2880 | \rm /tmp/out_command.$$ |
---|
[713] | 2881 | break |
---|
| 2882 | fi |
---|
| 2883 | (( i = i + 1 )) |
---|
| 2884 | done |
---|
| 2885 | |
---|
| 2886 | if [ ${status} -gt 0 ] ; then |
---|
[811] | 2887 | echo "IGCM_sys_ncflint : ncflint error" |
---|
| 2888 | IGCM_debug_Exit "ncflint" |
---|
[623] | 2889 | fi |
---|
[622] | 2890 | |
---|
[623] | 2891 | IGCM_debug_PopStack "IGCM_sys_ncflint" |
---|
[622] | 2892 | } |
---|
| 2893 | |
---|
[811] | 2894 | #D-#================================================== |
---|
| 2895 | #D-function IGCM_sys_ncks |
---|
| 2896 | #D-* Purpose: encapsulate ncks call so as to manage error code and retry |
---|
| 2897 | #D-* Examples: |
---|
| 2898 | #D- |
---|
[622] | 2899 | function IGCM_sys_ncks { |
---|
[1057] | 2900 | IGCM_debug_PushStack "IGCM_sys_ncks" $@ |
---|
[623] | 2901 | if ( $DEBUG_sys ) ; then |
---|
| 2902 | echo "IGCM_sys_ncks :" $@ |
---|
| 2903 | fi |
---|
[713] | 2904 | |
---|
| 2905 | typeset NB_ESSAI DELAI status i |
---|
| 2906 | # number of tentative |
---|
| 2907 | NB_ESSAI=3 |
---|
| 2908 | # time delay between tentative |
---|
| 2909 | DELAI=2 |
---|
| 2910 | |
---|
| 2911 | i=0 |
---|
| 2912 | while [ $i -lt $NB_ESSAI ] ; do |
---|
[1091] | 2913 | ncks -C $@ > /tmp/out_command.$$ 2>&1 |
---|
[713] | 2914 | status=$? |
---|
| 2915 | if [ ${status} -gt 0 ] ; then |
---|
| 2916 | IGCM_debug_Print 2 "IGCM_sys_ncks : error code ${status}" |
---|
[938] | 2917 | cat /tmp/out_command.$$ |
---|
| 2918 | \rm /tmp/out_command.$$ |
---|
[713] | 2919 | IGCM_debug_Print 2 "IGCM_sys_ncks : ${i}/${NB_ESSAI} sleep ${DELAI} seconds and try again." |
---|
[733] | 2920 | sleep $DELAI |
---|
[713] | 2921 | else |
---|
[938] | 2922 | \rm /tmp/out_command.$$ |
---|
[713] | 2923 | break |
---|
| 2924 | fi |
---|
| 2925 | (( i = i + 1 )) |
---|
| 2926 | done |
---|
| 2927 | |
---|
| 2928 | if [ ${status} -gt 0 ] ; then |
---|
[811] | 2929 | echo "IGCM_sys_ncks : ncks error" |
---|
| 2930 | IGCM_debug_Exit "ncks" |
---|
[623] | 2931 | fi |
---|
[622] | 2932 | |
---|
[623] | 2933 | IGCM_debug_PopStack "IGCM_sys_ncks" |
---|
[622] | 2934 | } |
---|
| 2935 | |
---|
[811] | 2936 | #D-#================================================== |
---|
| 2937 | #D-function IGCM_sys_ncpdq |
---|
| 2938 | #D-* Purpose: encapsulate ncpdq call so as to manage error code and retry |
---|
| 2939 | #D-* Examples: |
---|
| 2940 | #D- |
---|
[622] | 2941 | function IGCM_sys_ncpdq { |
---|
[1057] | 2942 | IGCM_debug_PushStack "IGCM_sys_ncpdq" $@ |
---|
[623] | 2943 | if ( $DEBUG_sys ) ; then |
---|
| 2944 | echo "IGCM_sys_ncpdq :" $@ |
---|
| 2945 | fi |
---|
[713] | 2946 | |
---|
| 2947 | typeset NB_ESSAI DELAI status i |
---|
| 2948 | # number of tentative |
---|
| 2949 | NB_ESSAI=3 |
---|
| 2950 | # time delay between tentative |
---|
| 2951 | DELAI=2 |
---|
| 2952 | |
---|
| 2953 | i=0 |
---|
| 2954 | while [ $i -lt $NB_ESSAI ] ; do |
---|
[1091] | 2955 | ncpdq -C $@ > /tmp/out_command.$$ 2>&1 |
---|
[713] | 2956 | status=$? |
---|
| 2957 | if [ ${status} -gt 0 ] ; then |
---|
| 2958 | IGCM_debug_Print 2 "IGCM_sys_ncpdq : error code ${status}" |
---|
[938] | 2959 | cat /tmp/out_command.$$ |
---|
| 2960 | \rm /tmp/out_command.$$ |
---|
[713] | 2961 | IGCM_debug_Print 2 "IGCM_sys_ncpdq : ${i}/${NB_ESSAI} sleep ${DELAI} seconds and try again." |
---|
[733] | 2962 | sleep $DELAI |
---|
[713] | 2963 | else |
---|
[938] | 2964 | \rm /tmp/out_command.$$ |
---|
[713] | 2965 | break |
---|
| 2966 | fi |
---|
| 2967 | (( i = i + 1 )) |
---|
| 2968 | done |
---|
| 2969 | |
---|
| 2970 | if [ ${status} -gt 0 ] ; then |
---|
[811] | 2971 | echo "IGCM_sys_ncpdq : ncpdq error" |
---|
| 2972 | IGCM_debug_Exit "ncpdq" |
---|
[623] | 2973 | fi |
---|
[622] | 2974 | |
---|
[623] | 2975 | IGCM_debug_PopStack "IGCM_sys_ncpdq" |
---|
[622] | 2976 | } |
---|
| 2977 | |
---|
[811] | 2978 | #D-#================================================== |
---|
| 2979 | #D-function IGCM_sys_ncra |
---|
| 2980 | #D-* Purpose: encapsulate ncra call so as to manage error code and retry |
---|
| 2981 | #D-* Examples: |
---|
| 2982 | #D- |
---|
[622] | 2983 | function IGCM_sys_ncra { |
---|
[1057] | 2984 | IGCM_debug_PushStack "IGCM_sys_ncra" $@ |
---|
[623] | 2985 | if ( $DEBUG_sys ) ; then |
---|
| 2986 | echo "IGCM_sys_ncra :" $@ |
---|
| 2987 | fi |
---|
[713] | 2988 | |
---|
| 2989 | typeset NB_ESSAI DELAI status i |
---|
| 2990 | # number of tentative |
---|
| 2991 | NB_ESSAI=3 |
---|
| 2992 | # time delay between tentative |
---|
| 2993 | DELAI=2 |
---|
| 2994 | |
---|
| 2995 | i=0 |
---|
| 2996 | while [ $i -lt $NB_ESSAI ] ; do |
---|
[1091] | 2997 | ncra -C $@ > /tmp/out_command.$$ 2>&1 |
---|
[713] | 2998 | status=$? |
---|
| 2999 | if [ ${status} -gt 0 ] ; then |
---|
| 3000 | IGCM_debug_Print 2 "IGCM_sys_ncra : error code ${status}" |
---|
[938] | 3001 | cat /tmp/out_command.$$ |
---|
| 3002 | \rm /tmp/out_command.$$ |
---|
[713] | 3003 | IGCM_debug_Print 2 "IGCM_sys_ncra : ${i}/${NB_ESSAI} sleep ${DELAI} seconds and try again." |
---|
[733] | 3004 | sleep $DELAI |
---|
[713] | 3005 | else |
---|
[938] | 3006 | \rm /tmp/out_command.$$ |
---|
[713] | 3007 | break |
---|
| 3008 | fi |
---|
| 3009 | (( i = i + 1 )) |
---|
| 3010 | done |
---|
| 3011 | |
---|
| 3012 | if [ ${status} -gt 0 ] ; then |
---|
[811] | 3013 | echo "IGCM_sys_ncra : ncra error" |
---|
| 3014 | IGCM_debug_Exit "ncra" |
---|
[623] | 3015 | fi |
---|
[622] | 3016 | |
---|
[623] | 3017 | IGCM_debug_PopStack "IGCM_sys_ncra" |
---|
[622] | 3018 | } |
---|
| 3019 | |
---|
[811] | 3020 | #D-#================================================== |
---|
| 3021 | #D-function IGCM_sys_ncrcat |
---|
| 3022 | #D-* Purpose: encapsulate ncrcat call so as to manage error code and retry |
---|
| 3023 | #D-* Examples: |
---|
| 3024 | #D- |
---|
[622] | 3025 | function IGCM_sys_ncrcat { |
---|
[1057] | 3026 | IGCM_debug_PushStack "IGCM_sys_ncrcat" $@ |
---|
[623] | 3027 | if ( $DEBUG_sys ) ; then |
---|
| 3028 | echo "IGCM_sys_ncrcat :" $@ |
---|
| 3029 | fi |
---|
[713] | 3030 | |
---|
[725] | 3031 | typeset NB_ESSAI DELAI status i lastArg |
---|
[713] | 3032 | # number of tentative |
---|
| 3033 | NB_ESSAI=3 |
---|
| 3034 | # time delay between tentative |
---|
| 3035 | DELAI=2 |
---|
| 3036 | |
---|
| 3037 | i=0 |
---|
| 3038 | while [ $i -lt $NB_ESSAI ] ; do |
---|
[1091] | 3039 | ncrcat -C $@ > /tmp/out_command.$$ 2>&1 |
---|
[713] | 3040 | status=$? |
---|
| 3041 | if [ ${status} -gt 0 ] ; then |
---|
| 3042 | IGCM_debug_Print 2 "IGCM_sys_ncrcat : error code ${status}" |
---|
[938] | 3043 | cat /tmp/out_command.$$ |
---|
| 3044 | \rm /tmp/out_command.$$ |
---|
[713] | 3045 | IGCM_debug_Print 2 "IGCM_sys_ncrcat : ${i}/${NB_ESSAI} sleep ${DELAI} seconds and try again." |
---|
[733] | 3046 | sleep $DELAI |
---|
[938] | 3047 | elif [ ! "X$( grep "WARNING Intra-file non-monotonicity" /tmp/out_command.$$ )" = "X" ] ; then |
---|
[721] | 3048 | IGCM_debug_Print 2 "IGCM_sys_ncrcat : WARNING Intra-file non-monotonicity" |
---|
[938] | 3049 | cat /tmp/out_command.$$ |
---|
[725] | 3050 | # remove files having corrupted time axis |
---|
[734] | 3051 | eval lastArg=\${$#} |
---|
[725] | 3052 | IGCM_debug_Print 2 "IGCM_sys_ncrcat : Delete ${lastArg}" |
---|
| 3053 | \rm ${lastArg} |
---|
[938] | 3054 | \rm /tmp/out_command.$$ |
---|
[721] | 3055 | IGCM_debug_Print 2 "IGCM_sys_ncrcat : ${i}/${NB_ESSAI} sleep ${DELAI} seconds and try again." |
---|
[733] | 3056 | sleep $DELAI |
---|
[713] | 3057 | else |
---|
[938] | 3058 | \rm /tmp/out_command.$$ |
---|
[713] | 3059 | break |
---|
| 3060 | fi |
---|
| 3061 | (( i = i + 1 )) |
---|
| 3062 | done |
---|
| 3063 | |
---|
| 3064 | if [ ${status} -gt 0 ] ; then |
---|
[811] | 3065 | echo "IGCM_sys_ncrcat : ncrcat error" |
---|
| 3066 | #IGCM_debug_Exit "ncrcat" |
---|
[623] | 3067 | fi |
---|
[622] | 3068 | |
---|
[623] | 3069 | IGCM_debug_PopStack "IGCM_sys_ncrcat" |
---|
[622] | 3070 | } |
---|
| 3071 | |
---|
[811] | 3072 | #D-#================================================== |
---|
| 3073 | #D-function IGCM_sys_ncrename |
---|
| 3074 | #D-* Purpose: encapsulate ncrename call so as to manage error code and retry |
---|
| 3075 | #D-* Examples: |
---|
| 3076 | #D- |
---|
[622] | 3077 | function IGCM_sys_ncrename { |
---|
[1057] | 3078 | IGCM_debug_PushStack "IGCM_sys_ncrename" $@ |
---|
[623] | 3079 | if ( $DEBUG_sys ) ; then |
---|
| 3080 | echo "IGCM_sys_ncrename :" $@ |
---|
| 3081 | fi |
---|
[713] | 3082 | |
---|
| 3083 | typeset NB_ESSAI DELAI status i |
---|
| 3084 | # number of tentative |
---|
| 3085 | NB_ESSAI=3 |
---|
| 3086 | # time delay between tentative |
---|
| 3087 | DELAI=2 |
---|
| 3088 | |
---|
| 3089 | i=0 |
---|
| 3090 | while [ $i -lt $NB_ESSAI ] ; do |
---|
[938] | 3091 | ncrename $@ > /tmp/out_command.$$ 2>&1 |
---|
[713] | 3092 | status=$? |
---|
| 3093 | if [ ${status} -gt 0 ] ; then |
---|
| 3094 | IGCM_debug_Print 2 "IGCM_sys_ncrename : error code ${status}" |
---|
[938] | 3095 | cat /tmp/out_command.$$ |
---|
| 3096 | \rm /tmp/out_command.$$ |
---|
[713] | 3097 | IGCM_debug_Print 2 "IGCM_sys_ncrename : ${i}/${NB_ESSAI} sleep ${DELAI} seconds and try again." |
---|
[733] | 3098 | sleep $DELAI |
---|
[713] | 3099 | else |
---|
[938] | 3100 | \rm /tmp/out_command.$$ |
---|
[713] | 3101 | break |
---|
| 3102 | fi |
---|
| 3103 | (( i = i + 1 )) |
---|
| 3104 | done |
---|
| 3105 | |
---|
| 3106 | if [ ${status} -gt 0 ] ; then |
---|
[811] | 3107 | echo "IGCM_sys_ncrename : ncrename error" |
---|
| 3108 | IGCM_debug_Exit "ncrename" |
---|
[623] | 3109 | fi |
---|
[622] | 3110 | |
---|
[623] | 3111 | IGCM_debug_PopStack "IGCM_sys_ncrename" |
---|
[622] | 3112 | } |
---|
| 3113 | |
---|
[811] | 3114 | #D-#================================================== |
---|
| 3115 | #D-function IGCM_sys_ncwa |
---|
| 3116 | #D-* Purpose: encapsulate ncwa call so as to manage error code and retry |
---|
| 3117 | #D-* Examples: |
---|
| 3118 | #D- |
---|
[622] | 3119 | function IGCM_sys_ncwa { |
---|
[1057] | 3120 | IGCM_debug_PushStack "IGCM_sys_ncwa" $@ |
---|
[623] | 3121 | if ( $DEBUG_sys ) ; then |
---|
| 3122 | echo "IGCM_sys_ncwa :" $@ |
---|
| 3123 | fi |
---|
[713] | 3124 | |
---|
| 3125 | typeset NB_ESSAI DELAI status i |
---|
| 3126 | # number of tentative |
---|
| 3127 | NB_ESSAI=3 |
---|
| 3128 | # time delay between tentative |
---|
| 3129 | DELAI=2 |
---|
| 3130 | |
---|
| 3131 | i=0 |
---|
| 3132 | while [ $i -lt $NB_ESSAI ] ; do |
---|
[1091] | 3133 | ncwa -C $@ > /tmp/out_command.$$ 2>&1 |
---|
[713] | 3134 | status=$? |
---|
| 3135 | if [ ${status} -gt 0 ] ; then |
---|
| 3136 | IGCM_debug_Print 2 "IGCM_sys_ncwa : error code ${status}" |
---|
[938] | 3137 | cat /tmp/out_command.$$ |
---|
| 3138 | \rm /tmp/out_command.$$ |
---|
[713] | 3139 | IGCM_debug_Print 2 "IGCM_sys_ncwa : ${i}/${NB_ESSAI} sleep ${DELAI} seconds and try again." |
---|
[733] | 3140 | sleep $DELAI |
---|
[713] | 3141 | else |
---|
[938] | 3142 | \rm /tmp/out_command.$$ |
---|
[713] | 3143 | break |
---|
| 3144 | fi |
---|
| 3145 | (( i = i + 1 )) |
---|
| 3146 | done |
---|
| 3147 | |
---|
| 3148 | if [ ${status} -gt 0 ] ; then |
---|
[811] | 3149 | echo "IGCM_sys_ncwa : ncwa error" |
---|
| 3150 | IGCM_debug_Exit "ncwa" |
---|
[623] | 3151 | fi |
---|
[622] | 3152 | |
---|
[623] | 3153 | IGCM_debug_PopStack "IGCM_sys_ncwa" |
---|
[622] | 3154 | } |
---|
[623] | 3155 | |
---|
| 3156 | ############################################################## |
---|
| 3157 | # CDO OPERATOR |
---|
| 3158 | |
---|
[811] | 3159 | #D-#================================================== |
---|
| 3160 | #D-function IGCM_sys_cdo |
---|
| 3161 | #D-* Purpose: encapsulate cdo call so as to manage error code and retry |
---|
| 3162 | #D-* Examples: |
---|
| 3163 | #D- |
---|
[623] | 3164 | function IGCM_sys_cdo { |
---|
[1057] | 3165 | IGCM_debug_PushStack "IGCM_sys_cdo" $@ |
---|
[623] | 3166 | if ( $DEBUG_sys ) ; then |
---|
| 3167 | echo "IGCM_sys_cdo :" $@ |
---|
| 3168 | fi |
---|
[713] | 3169 | |
---|
| 3170 | typeset status |
---|
| 3171 | |
---|
[938] | 3172 | \cdo $@ > /tmp/out_command.$$ 2>&1 |
---|
[713] | 3173 | status=$? |
---|
| 3174 | if [ ${status} -gt 0 ] ; then |
---|
| 3175 | echo "IGCM_sys_cdo : error code ${status}" |
---|
[938] | 3176 | cat /tmp/out_command.$$ |
---|
| 3177 | \rm /tmp/out_command.$$ |
---|
[623] | 3178 | IGCM_debug_PopStack "IGCM_sys_cdo" |
---|
| 3179 | return 1 |
---|
| 3180 | else |
---|
| 3181 | IGCM_debug_PopStack "IGCM_sys_cdo" |
---|
| 3182 | return 0 |
---|
| 3183 | fi |
---|
| 3184 | |
---|
| 3185 | IGCM_debug_PopStack "IGCM_sys_cdo" |
---|
| 3186 | } |
---|