[622] | 1 | #!/bin/ksh |
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| 2 | |
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| 3 | #************************************************************** |
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| 4 | # Author: Sebastien Denvil, Martial Mancip, Arnaud Caubel |
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| 5 | # Contact: Arnaud.Caubel__at__lsce.ipsl.fr |
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| 6 | # $Revision:: $ Revision of last commit |
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| 7 | # $Author:: $ Author of last commit |
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| 8 | # $Date:: $ Date of last commit |
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| 9 | # IPSL (2006) |
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| 10 | # This software is governed by the CeCILL licence see libIGCM/libIGCM_CeCILL.LIC |
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| 11 | # |
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| 12 | #************************************************************** |
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| 13 | |
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| 14 | #========================================================= |
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| 15 | # The documentation of this file can be automatically generated |
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[623] | 16 | # if you use the prefix #D- for comments to be extracted. |
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[622] | 17 | # Extract with command: cat lib* | grep "^#D-" | cut -c "4-" |
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| 18 | #========================================================= |
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| 19 | |
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| 20 | #D-#================================================== |
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[623] | 21 | #D-LibIGCM_sys for Curie |
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[622] | 22 | #D-#================================================== |
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| 23 | #D- |
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[623] | 24 | #D- This ksh library if a layer under some usefull |
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[622] | 25 | #D-environment variables and shell commands. |
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| 26 | #D-All those definitions depend on host particularities. |
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| 27 | #D-It manages a stack mechanism and test validity of operations. |
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| 28 | #D-All function described bellow must be prefixed by IGCM_sys. |
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| 29 | |
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| 30 | #==================================================== |
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| 31 | # libIGCM_sys PARAMETERS |
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| 32 | #==================================================== |
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| 33 | |
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| 34 | #==================================================== |
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| 35 | # set DEBUG_sys to true to output calls of function |
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| 36 | typeset -r DEBUG_sys=${DEBUG_sys:=true} |
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| 37 | |
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| 38 | #==================================================== |
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| 39 | # Turn in dry run mode ? (sys_Put_Rest, sys_Put_Out, sys_Get) |
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| 40 | typeset -r DRYRUN=${DRYRUN:=0} |
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| 41 | |
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| 42 | # YOU MUST COMPILE YOUR EXE FILES FOR DRYRUN MODE ! |
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| 43 | # ------------------------------------------------------------------------------------- |
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| 44 | # | DRYRUN= | Date computations, | sys_Get | Exe | sys_Put_Out; sys_Put_Rest | |
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| 45 | # | | Cp/Exe param files | | Chmod | | |
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| 46 | # | | Qsub | | | | |
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| 47 | # ------------------------------------------------------------------------------------- |
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| 48 | # | 0 | yes | yes | yes | yes | |
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| 49 | # ------------------------------------------------------------------------------------- |
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| 50 | # | 1 | yes | yes | yes | no | |
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| 51 | # ------------------------------------------------------------------------------------- |
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| 52 | # | 2 | yes | yes | no | no | |
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| 53 | # ------------------------------------------------------------------------------------- |
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| 54 | # | 3 | yes | no | no | no | |
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| 55 | # ------------------------------------------------------------------------------------- |
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| 56 | |
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| 57 | #===================================================== |
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| 58 | # Global Variables : |
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| 59 | #===================================================== |
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| 60 | # Language : "fr" or "en" |
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| 61 | typeset -r MYLANG="fr" |
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| 62 | |
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| 63 | #===================================================== |
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| 64 | # Host and user names |
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| 65 | # $hostname ou hostname |
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| 66 | typeset HOST=${HOST:=$( hostname )} |
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| 67 | # $username ou whoami |
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| 68 | typeset LOGIN=${LOGIN:=$( whoami )} |
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| 69 | # $hostname of the MASTER job |
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| 70 | typeset MASTER=curie |
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| 71 | |
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| 72 | #D- |
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| 73 | #D-#================================================== |
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| 74 | #D-Program used in libIGCM |
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| 75 | #D-#================================================== |
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| 76 | |
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| 77 | # rsync with path |
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| 78 | typeset -r RSYNC=/usr/bin/rsync |
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| 79 | # RSYNC_opt args to rsync |
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| 80 | typeset -r RSYNC_opt="-va" |
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| 81 | # ie storage filesystem |
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[623] | 82 | typeset -r STOREHOST=${MASTER} |
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[622] | 83 | |
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| 84 | #==================================================== |
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| 85 | # Source default environment |
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| 86 | #==================================================== |
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| 87 | ##. /etc/profile |
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| 88 | |
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| 89 | #==================================================== |
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| 90 | # Set environment tools (ferret, nco, cdo) |
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| 91 | #==================================================== |
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| 92 | . /ccc/cont003/home/dsm/p86ipsl/.atlas_env_curie_ksh |
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| 93 | |
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| 94 | #==================================================== |
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| 95 | # Specific for ocean additionnal diagnostic |
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| 96 | export FER_GO="$FER_GO /home/cont003/p86denv/IGCM_POST_UTIL/JNL /home/cont003/p86denv/GRAF /home/cont003/p86denv/GRAF/GO" |
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| 97 | export FER_PALETTE="$FER_PALETTE /home/cont003/p86denv/GRAF/PALET" |
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| 98 | |
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| 99 | #==================================================== |
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| 100 | # Host specific DIRECTORIES |
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| 101 | #==================================================== |
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| 102 | |
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[623] | 103 | # ============ CESIUM START ============ # |
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| 104 | |
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[622] | 105 | #==================================================== |
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[623] | 106 | #- Mirror libIGCM from titane to cesium if needed |
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| 107 | #ROOTSYS=$( echo ${libIGCM} | gawk -F"/" '{print $3}' ) |
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| 108 | #if [ ! ${ROOTSYS} = "home" ] ; then |
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| 109 | # typeset -r MirrorlibIGCM=${MirrorlibIGCM:=true} |
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| 110 | #else |
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| 111 | # typeset -r MirrorlibIGCM=${MirrorlibIGCM:=false} |
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| 112 | #fi |
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| 113 | |
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| 114 | #==================================================== |
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| 115 | #- libIGCM_POST |
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| 116 | #if ( ${MirrorlibIGCM} ) ; then |
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| 117 | # PATHlibIGCM=$( echo ${libIGCM} | gawk -F"${LOGIN}/" '{print $2}' | sed -e "s&/libIGCM&&" ) |
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| 118 | # typeset -r libIGCM_POST=${HOME}/MIRROR/${PATHlibIGCM}/libIGCM |
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| 119 | #else |
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| 120 | # typeset -r libIGCM_POST=${libIGCM} |
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| 121 | #fi |
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| 122 | |
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| 123 | # ============ CESIUM END ============ # |
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| 124 | |
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| 125 | #==================================================== |
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| 126 | #- MirrorlibIGCM for frontend |
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| 127 | typeset -r MirrorlibIGCM=${MirrorlibIGCM:=false} |
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| 128 | |
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| 129 | #==================================================== |
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| 130 | #- libIGCM_POST for frontend |
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| 131 | typeset -r libIGCM_POST=${libIGCM} |
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| 132 | |
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| 133 | #==================================================== |
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[622] | 134 | #- R_EXE (==> BIN_DIR = ${MODIPSL}/bin ) |
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| 135 | typeset -r R_EXE="${MODIPSL}/bin" |
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| 136 | |
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| 137 | #==================================================== |
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| 138 | #- SUBMIT_DIR : submission dir |
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| 139 | typeset SUBMIT_DIR=${SUBMIT_DIR:=${BRIDGE_MSUB_PWD}} |
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| 140 | |
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| 141 | #==================================================== |
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[623] | 142 | #- ARCHIVE (dedicated to large files) |
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[622] | 143 | typeset -r ARCHIVE=${CCCSTOREDIR} |
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| 144 | |
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[623] | 145 | #- ARCHIVE (dedicated to small/medium files) |
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| 146 | typeset -r STORAGE=${CCCWORKDIR} |
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[622] | 147 | |
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| 148 | #==================================================== |
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| 149 | #- IN |
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| 150 | typeset -r R_IN=${R_IN:=/ccc/work/cont003/dsm/p86ipsl/IGCM} |
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| 151 | typeset -r R_IN_ECMWF=${R_IN_ECMWF:=/ccc/work/cont003/dsm/p24data} |
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| 152 | |
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| 153 | #==================================================== |
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[623] | 154 | #- R_OUT |
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[622] | 155 | typeset -r R_OUT=${ARCHIVE}/IGCM_OUT |
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| 156 | |
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| 157 | #==================================================== |
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[623] | 158 | #- R_FIG (hosting figures : monitoring and atlas, and/or small files) |
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| 159 | typeset -r R_FIG=${STORAGE}/IGCM_OUT |
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[622] | 160 | |
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| 161 | #==================================================== |
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[623] | 162 | #- R_BUF (ONLY FOR double copy an scratch) |
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| 163 | typeset -r R_BUF=${SCRATCHDIR}/IGCM_OUT |
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| 164 | |
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| 165 | #==================================================== |
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| 166 | #- BIG_DIR : BIG_DIR to store files waiting for rebuild |
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| 167 | typeset -r BIG_DIR=${BIG_DIR:=${SCRATCHDIR}/REBUILD} |
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| 168 | |
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| 169 | #==================================================== |
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[622] | 170 | #- OUT_POST |
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[623] | 171 | typeset -r R_OUT_POST=${SCRATCHDIR}/IGCM_OUT |
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[622] | 172 | |
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| 173 | #==================================================== |
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| 174 | #- RUN_DIR_PATH : Temporary working directory (=> TMP) |
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| 175 | if [ ! X${BRIDGE_MSUB_NPROC} = X1 ] ; then |
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[623] | 176 | typeset -r RUN_DIR_PATH=${RUN_DIR_PATH:=${SCRATCHDIR}/RUN_DIR/${BRIDGE_MSUB_JOBID}} |
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[622] | 177 | else |
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[623] | 178 | typeset -r RUN_DIR_PATH=${RUN_DIR_PATH:=${SCRATCHDIR}/TMPDIR_IGCM/${BRIDGE_MSUB_JOBID}} |
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[622] | 179 | fi |
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| 180 | |
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| 181 | #==================================================== |
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| 182 | #- HOST_MPIRUN_COMMAND |
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| 183 | typeset -r HOST_MPIRUN_COMMAND=${HOST_MPIRUN_COMMAND:="time ccc_mprun"} |
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| 184 | |
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| 185 | #==================================================== |
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| 186 | #- Max number of arguments passed to nco operator or demigration command |
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| 187 | UNIX_MAX_LIMIT=360 |
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| 188 | |
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[623] | 189 | #==================================================== |
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| 190 | #- set PackDefault true on curie |
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| 191 | PackDefault=true |
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| 192 | |
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[664] | 193 | #==================================================== |
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| 194 | #- Number of core per node (max number of OpenMP task) |
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[622] | 195 | NUM_COREPERNODE=8 |
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| 196 | |
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[623] | 197 | #==================================================== |
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| 198 | #- Default number of MPI task for IPSL coupled model |
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| 199 | #- required for backward compatibility |
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| 200 | #- |
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| 201 | DEFAULT_NUM_PROC_OCE=5 |
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| 202 | DEFAULT_NUM_PROC_CPL=1 |
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[637] | 203 | (( DEFAULT_NUM_PROC_ATM = BATCH_NUM_PROC_TOT - DEFAULT_NUM_PROC_OCE - DEFAULT_NUM_PROC_CPL )) |
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| 204 | DEFAULT_NUM_PROC_TOTAL=${BATCH_NUM_PROC_TOT} |
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[623] | 205 | |
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[676] | 206 | |
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[622] | 207 | #D-#================================================== |
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| 208 | #D-function IGCM_sys_RshMaster |
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[623] | 209 | #D-* Purpose: Connection to frontend machine. |
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[622] | 210 | #D-* Examples: |
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| 211 | #D- |
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| 212 | function IGCM_sys_RshMaster { |
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[623] | 213 | IGCM_debug_PushStack "IGCM_sys_RshMaster" $@ |
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| 214 | /bin/ksh <<-EOF |
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[622] | 215 | export libIGCM=${libIGCM} |
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| 216 | export DEBUG_debug=${DEBUG_debug} |
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| 217 | . ${libIGCM}/libIGCM_debug/libIGCM_debug.ksh |
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| 218 | . ${libIGCM}/libIGCM_card/libIGCM_card.ksh |
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| 219 | ${@} |
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| 220 | EOF |
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[623] | 221 | if [ $? -gt 0 ] ; then |
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| 222 | echo "IGCM_sys_RshMaster : erreur." |
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| 223 | IGCM_debug_Exit "IGCM_sys_RshMaster" |
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| 224 | fi |
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| 225 | IGCM_debug_PopStack "IGCM_sys_RshMaster" |
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[622] | 226 | } |
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| 227 | |
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| 228 | #D-#================================================== |
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| 229 | #D-function IGCM_sys_RshArchive |
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| 230 | #D-* Purpose: Archive rsh command |
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| 231 | #D-* Examples: |
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| 232 | #D- |
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| 233 | function IGCM_sys_RshArchive { |
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[623] | 234 | IGCM_debug_PushStack "IGCM_sys_RshArchive" $@ |
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| 235 | /bin/ksh <<-EOF |
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[622] | 236 | ${@} |
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| 237 | EOF |
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[623] | 238 | if [ $? -gt 0 ] ; then |
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| 239 | echo "IGCM_sys_RshArchive : erreur." |
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| 240 | IGCM_debug_Exit "IGCM_sys_RshArchive" |
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| 241 | fi |
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| 242 | IGCM_debug_PopStack "IGCM_sys_RshArchive" |
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[622] | 243 | } |
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| 244 | |
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| 245 | #D-#================================================== |
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| 246 | #D-function IGCM_sys_RshPost |
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| 247 | #D-* Purpose: Post-process rsh command |
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| 248 | #D-* Examples: |
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| 249 | #D- |
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| 250 | function IGCM_sys_RshPost { |
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[623] | 251 | IGCM_debug_PushStack "IGCM_sys_RshPost" $@ |
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| 252 | if ( $DEBUG_sys ) ; then |
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| 253 | echo "IGCM_sys_RshPost :" $@ |
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| 254 | fi |
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[622] | 255 | |
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[623] | 256 | #echo cat tmp_IGCM_sys_RshPost_$$ INITIAL |
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| 257 | #cat tmp_IGCM_sys_RshPost_$$ |
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| 258 | # keep standard input (stdin) for the loop onto temporary file |
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| 259 | cat >tmp_IGCM_sys_RshPost_$$ |
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| 260 | |
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| 261 | # ============ FRONTEND START ============ # |
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| 262 | |
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| 263 | /bin/ksh <tmp_IGCM_sys_RshPost_$$ |
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| 264 | if [ $? -gt 0 ] ; then |
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| 265 | echo "IGCM_sys_RshPost : erreur." |
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| 266 | IGCM_debug_Exit "IGCM_sys_RshPost" |
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| 267 | fi |
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| 268 | # delete temporary file |
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| 269 | \rm tmp_IGCM_sys_RshPost_$$ |
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| 270 | |
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| 271 | # ============ FRONTEND END ============ # |
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| 272 | |
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| 273 | # ============ CESIUM START ============ # |
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| 274 | # typeset NB_ESSAI DELAI status i |
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| 275 | # if [ "X$( grep rebuild_from tmp_IGCM_sys_RshPost_$$ )" != "X" ] ; then |
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| 276 | # #little hack so that rebuild submission is done on titane not an cesium |
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| 277 | # |
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| 278 | # libIGCM_POST_sed=$( echo $libIGCM_POST | sed 's/\//\\\//g' ) |
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| 279 | # POST_DIR_sed=$( echo ${POST_DIR} | sed 's/\//\\\//g' ) |
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| 280 | # sed "s/IGCM_sys_QsubPost/IGCM_sys_Qsub/g" tmp_IGCM_sys_RshPost_$$ > tmp.txt |
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| 281 | # sed "s/ rebuild_fromWorkdir/ ${libIGCM_POST_sed}\/rebuild_fromWorkdir.job/g" tmp.txt > tmp_IGCM_sys_RshPost_$$ |
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| 282 | # sed "s/ rebuild_fromArchive/ ${libIGCM_POST_sed}\/rebuild_fromArchive.job/g" tmp_IGCM_sys_RshPost_$$ > tmp.txt |
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| 283 | # sed "s/Script_Post_Output=/Script_Output=${POST_DIR_sed}\//g" tmp.txt > tmp_IGCM_sys_RshPost_$$ |
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| 284 | # \mv tmp.txt tmp_IGCM_sys_RshPost_$$ |
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| 285 | # |
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| 286 | # echo cat tmp_IGCM_sys_RshPost_$$ AFTER |
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| 287 | # cat tmp_IGCM_sys_RshPost_$$ |
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| 288 | # |
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| 289 | # /bin/ksh <tmp_IGCM_sys_RshPost_$$ |
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| 290 | # if [ $? -gt 0 ] ; then |
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| 291 | # echo "IGCM_sys_RshPost : erreur." |
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| 292 | # IGCM_debug_Exit "IGCM_sys_RshPost" |
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| 293 | # fi |
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| 294 | # # delete temporary file |
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| 295 | # \rm tmp_IGCM_sys_RshPost_$$ |
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| 296 | # |
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| 297 | # else |
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| 298 | # # number of tentative |
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| 299 | # NB_ESSAI=10 |
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| 300 | # # time delay between tentative |
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| 301 | # DELAI=10 |
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| 302 | # i=0 |
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| 303 | # while [ $i -ne $NB_ESSAI ] ; do |
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| 304 | # ssh -t titane996 ssh cesium /bin/ksh <tmp_IGCM_sys_RshPost_$$ |
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| 305 | # status=$? |
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| 306 | # if [ ${status} -ne 0 ]; |
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| 307 | # then |
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| 308 | # sleep $DELAI |
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| 309 | # else |
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| 310 | # break |
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| 311 | # fi |
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| 312 | # let i=$i+1 |
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| 313 | # done |
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| 314 | # # delete temporary file |
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| 315 | # \rm tmp_IGCM_sys_RshPost_$$ |
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| 316 | # |
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| 317 | # if [ ${status} -gt 0 ] ; then |
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| 318 | # echo "IGCM_sys_RshPost : erreur." |
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| 319 | # IGCM_debug_Exit "IGCM_sys_RshPost" |
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| 320 | # fi |
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| 321 | # fi |
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| 322 | |
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| 323 | # ============ CESIUM END ============ # |
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| 324 | |
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| 325 | IGCM_debug_PopStack "IGCM_sys_RshPost" |
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[622] | 326 | } |
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| 327 | |
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| 328 | #D-#================================================== |
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| 329 | #D-function IGCM_sys_SendMail |
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| 330 | #D-* Purpose: Send mail when simulation is over |
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| 331 | #D-* Examples: |
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| 332 | #D- |
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| 333 | function IGCM_sys_SendMail { |
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[623] | 334 | IGCM_debug_PushStack "IGCM_sys_SendMail" $@ |
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| 335 | if ( $DEBUG_sys ) ; then |
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| 336 | echo "IGCM_sys_SendMail :" $@ |
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| 337 | fi |
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[622] | 338 | |
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[623] | 339 | if ( ${ExitFlag} ) ; then |
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| 340 | status=failed |
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| 341 | else |
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| 342 | status=completed |
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| 343 | fi |
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[622] | 344 | |
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[623] | 345 | cat << END_MAIL > job_end.mail |
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[622] | 346 | Dear ${LOGIN}, |
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| 347 | |
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| 348 | Simulation ${config_UserChoices_JobName} is ${status} on supercomputer `hostname`. |
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| 349 | Job started : ${DateBegin} |
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| 350 | Job ended : ${DateEnd} |
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| 351 | Output files are available in ${R_SAVE} |
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[623] | 352 | Files to be rebuild are temporarily available in ${REBUILD_DIR} |
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| 353 | Pre-packed files are temporarily available in ${R_BUFR} |
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[622] | 354 | Script files, Script Outputs and Debug files (if necessary) are available in ${SUBMIT_DIR} |
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| 355 | END_MAIL |
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| 356 | |
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| 357 | if [ ! -z ${config_UserChoices_MailName} ] ; then |
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[623] | 358 | mail -s "${config_UserChoices_JobName} ${status}" ${config_UserChoices_MailName} < job_end.mail |
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[622] | 359 | elif [ -f ~/.forward ] ; then |
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[623] | 360 | mail -s "${config_UserChoices_JobName} ${status}" $( cat ~/.forward ) < job_end.mail |
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[622] | 361 | fi |
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[623] | 362 | sleep 10 |
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| 363 | rm -f job_end.mail |
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[622] | 364 | |
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[623] | 365 | if [ $? -gt 0 ] ; then |
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| 366 | echo "IGCM_sys_SendMail : erreur." |
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| 367 | IGCM_debug_Exit "IGCM_sys_SendMail" |
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| 368 | fi |
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| 369 | IGCM_debug_PopStack "IGCM_sys_SendMail" |
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[622] | 370 | } |
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| 371 | |
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| 372 | #D-#================================================== |
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| 373 | #D-function IGCM_sys_Mkdir |
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| 374 | #D-* Purpose: Master locale mkdir command |
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| 375 | #D-* Examples: |
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| 376 | #D- |
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| 377 | function IGCM_sys_Mkdir { |
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[623] | 378 | IGCM_debug_PushStack "IGCM_sys_Mkdir" $@ |
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| 379 | if ( $DEBUG_sys ) ; then |
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| 380 | echo "IGCM_sys_Mkdir :" $@ |
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| 381 | fi |
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| 382 | if [ ! -d ${1} ]; then |
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| 383 | \mkdir -p $1 |
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| 384 | if [ $? -gt 0 ] ; then |
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| 385 | echo "IGCM_sys_Mkdir : erreur." |
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| 386 | IGCM_debug_Exit "IGCM_sys_Mkdir" |
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[622] | 387 | fi |
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[623] | 388 | fi |
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| 389 | # vérification : |
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| 390 | if [ ! -d ${1} ] ; then |
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| 391 | echo "IGCM_sys_Mkdir : erreur." |
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| 392 | IGCM_debug_Exit "IGCM_sys_Mkdir" |
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| 393 | fi |
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| 394 | IGCM_debug_PopStack "IGCM_sys_Mkdir" |
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[622] | 395 | } |
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| 396 | |
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| 397 | #D-#================================================== |
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| 398 | #D-function IGCM_sys_MkdirArchive |
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| 399 | #D-* Purpose: Mkdir on Archive |
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| 400 | #D-* Examples: |
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| 401 | #D- |
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| 402 | function IGCM_sys_MkdirArchive { |
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[623] | 403 | IGCM_debug_PushStack "IGCM_sys_MkdirArchive" $@ |
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| 404 | if ( $DEBUG_sys ) ; then |
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| 405 | echo "IGCM_sys_MkdirArchive :" $@ |
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| 406 | fi |
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| 407 | #- creation de repertoire sur le serveur fichier |
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| 408 | if [ ! -d ${1} ]; then |
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| 409 | \mkdir -p $1 |
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| 410 | if [ $? -gt 0 ] ; then |
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| 411 | echo "IGCM_sys_MkdirArchive : erreur." |
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| 412 | IGCM_debug_Exit "IGCM_sys_MkdirArchive" |
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[622] | 413 | fi |
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[623] | 414 | fi |
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| 415 | IGCM_debug_PopStack "IGCM_sys_MkdirArchive" |
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[622] | 416 | } |
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| 417 | |
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| 418 | #D-#================================================== |
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| 419 | #D-function IGCM_sys_MkdirWork |
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| 420 | #D-* Purpose: Mkdir on Work |
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| 421 | #D-* Examples: |
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| 422 | #D- |
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| 423 | function IGCM_sys_MkdirWork { |
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[623] | 424 | IGCM_debug_PushStack "IGCM_sys_MkdirWork" $@ |
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| 425 | if ( $DEBUG_sys ) ; then |
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| 426 | echo "IGCM_sys_MkdirWork :" $@ |
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| 427 | fi |
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| 428 | #- creation de repertoire sur le serveur fichier |
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| 429 | if [ ! -d ${1} ]; then |
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| 430 | \mkdir -p $1 |
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| 431 | if [ $? -gt 0 ] ; then |
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| 432 | echo "IGCM_sys_MkdirWork : erreur." |
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| 433 | IGCM_debug_Exit "IGCM_sys_MkdirWork" |
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[622] | 434 | fi |
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[623] | 435 | fi |
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| 436 | IGCM_debug_PopStack "IGCM_sys_MkdirWork" |
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[622] | 437 | } |
---|
| 438 | |
---|
| 439 | #D-#================================================== |
---|
| 440 | #D-function IGCM_sys_Cd |
---|
| 441 | #D-* Purpose: master cd command |
---|
| 442 | #D-* Examples: |
---|
| 443 | #D- |
---|
| 444 | function IGCM_sys_Cd { |
---|
[623] | 445 | IGCM_debug_PushStack "IGCM_sys_Cd" $@ |
---|
| 446 | if ( $DEBUG_sys ) ; then |
---|
| 447 | echo "IGCM_sys_Cd :" $@ |
---|
| 448 | fi |
---|
| 449 | \cd $1 |
---|
| 450 | if [ $? -gt 0 ] ; then |
---|
| 451 | echo "IGCM_sys_Cd : erreur." |
---|
| 452 | IGCM_debug_Exit "IGCM_sys_Cd" |
---|
| 453 | fi |
---|
| 454 | IGCM_debug_PopStack "IGCM_sys_Cd" |
---|
[622] | 455 | } |
---|
| 456 | |
---|
| 457 | #D-#================================================== |
---|
| 458 | #D-function IGCM_sys_Chmod |
---|
| 459 | #D-* Purpose: Chmod |
---|
| 460 | #D-* Examples: |
---|
| 461 | #D- |
---|
| 462 | function IGCM_sys_Chmod { |
---|
[623] | 463 | IGCM_debug_PushStack "IGCM_sys_Chmod" -- $@ |
---|
| 464 | if ( $DEBUG_sys ) ; then |
---|
| 465 | echo "IGCM_sys_Chmod :" $@ |
---|
| 466 | fi |
---|
| 467 | if [ $DRYRUN -le 1 ]; then |
---|
| 468 | \chmod $@ |
---|
| 469 | if [ $? -gt 0 ] ; then |
---|
| 470 | echo "IGCM_sys_Chmod : erreur." |
---|
| 471 | IGCM_debug_Exit "IGCM_sys_Chmod" |
---|
[622] | 472 | fi |
---|
[623] | 473 | else |
---|
| 474 | ( ${DEBUG_debug} ) && echo "DRYRUN mode = " $DRYRUN >> stack |
---|
| 475 | fi |
---|
| 476 | IGCM_debug_PopStack "IGCM_sys_Chmod" |
---|
[622] | 477 | } |
---|
| 478 | |
---|
| 479 | #D-#================================================== |
---|
| 480 | #D-function IGCM_sys_FileSize |
---|
| 481 | #D-* Purpose: Filesize |
---|
| 482 | #D-* Examples: |
---|
| 483 | #D- |
---|
| 484 | function IGCM_sys_FileSize { |
---|
[623] | 485 | IGCM_debug_PushStack "IGCM_sys_FileSize" $@ |
---|
[622] | 486 | |
---|
[623] | 487 | typeset sizeF |
---|
| 488 | set +A sizeF -- $( ls -la ${1} ) |
---|
| 489 | if [ $? -gt 0 ] ; then |
---|
| 490 | IGCM_debug_Exit "IGCM_sys_FileSize" |
---|
| 491 | fi |
---|
| 492 | eval ${2}=${sizeF[4]} |
---|
[622] | 493 | |
---|
[623] | 494 | IGCM_debug_PopStack "IGCM_sys_FileSize" |
---|
[622] | 495 | } |
---|
| 496 | |
---|
| 497 | #D-#================================================== |
---|
| 498 | #D-function IGCM_sys_TestDir |
---|
| 499 | #D-* Purpose: Test Directory that must exists |
---|
| 500 | #D-* Examples: |
---|
| 501 | #D- |
---|
| 502 | function IGCM_sys_TestDir { |
---|
[623] | 503 | IGCM_debug_PushStack "IGCM_sys_TestDir" $@ |
---|
| 504 | if ( $DEBUG_sys ) ; then |
---|
| 505 | echo "IGCM_sys_TestDir :" $@ |
---|
| 506 | fi |
---|
| 507 | typeset ExistFlag |
---|
| 508 | ExistFlag=$( [ -d $1 ] && echo 0 || echo 1 ) |
---|
| 509 | IGCM_debug_PopStack "IGCM_sys_TestDir" |
---|
[622] | 510 | |
---|
[623] | 511 | return ${ExistFlag} |
---|
[622] | 512 | } |
---|
| 513 | |
---|
| 514 | #D-#================================================== |
---|
| 515 | #D-function IGCM_sys_TestDirArchive |
---|
| 516 | #D-* Purpose: Test Directory that must exists on Archive |
---|
| 517 | #D-* Examples: |
---|
| 518 | #D- |
---|
| 519 | function IGCM_sys_TestDirArchive { |
---|
[623] | 520 | IGCM_debug_PushStack "IGCM_sys_TestDirArchive" $@ |
---|
| 521 | if ( $DEBUG_sys ) ; then |
---|
| 522 | echo "IGCM_sys_TestDirArchive :" $@ |
---|
| 523 | fi |
---|
| 524 | typeset ExistFlag |
---|
| 525 | ExistFlag=$( [ -d $1 ] && echo 0 || echo 1 ) |
---|
| 526 | IGCM_debug_PopStack "IGCM_sys_TestDirArchive" |
---|
[622] | 527 | |
---|
[623] | 528 | return ${ExistFlag} |
---|
[622] | 529 | } |
---|
| 530 | |
---|
| 531 | #D-#================================================== |
---|
[623] | 532 | #D-function IGCM_sys_IsFileArchived |
---|
| 533 | #D-* Purpose: Test file that must NOT EXISTS on Archive |
---|
| 534 | #D-* Examples: |
---|
| 535 | #D- |
---|
| 536 | function IGCM_sys_IsFileArchived { |
---|
| 537 | IGCM_debug_PushStack "IGCM_sys_IsFileArchived" $@ |
---|
| 538 | if ( $DEBUG_sys ) ; then |
---|
| 539 | echo "IGCM_sys_IsFileArchived :" $@ |
---|
| 540 | fi |
---|
| 541 | typeset IsArchivedFlag |
---|
| 542 | IsArchivedFlag=$( [ X$( echo $1 | grep ^\/ccc\/store ) != X ] && echo 0 || echo 1 ) |
---|
| 543 | IGCM_debug_PopStack "IGCM_sys_IsFileArchived" |
---|
| 544 | |
---|
| 545 | return ${IsArchivedFlag} |
---|
| 546 | } |
---|
| 547 | |
---|
| 548 | #D-#================================================== |
---|
[622] | 549 | #D-function IGCM_sys_TestFileArchive |
---|
| 550 | #D-* Purpose: Test file that must NOT EXISTS on Archive |
---|
| 551 | #D-* Examples: |
---|
| 552 | #D- |
---|
| 553 | function IGCM_sys_TestFileArchive { |
---|
[623] | 554 | IGCM_debug_PushStack "IGCM_sys_TestFileArchive" $@ |
---|
| 555 | typeset ExistFlag |
---|
| 556 | ExistFlag=$( [ -f $1 ] && echo 0 || echo 1 ) |
---|
| 557 | IGCM_debug_PopStack "IGCM_sys_TestFileArchive" |
---|
[622] | 558 | |
---|
[623] | 559 | return ${ExistFlag} |
---|
[622] | 560 | } |
---|
| 561 | |
---|
| 562 | #D-#================================================== |
---|
[623] | 563 | #D-function IGCM_sys_TestFileBuffer |
---|
| 564 | #D-* Purpose: Test file that must NOT EXISTS on Buffer |
---|
| 565 | #D-* Examples: |
---|
| 566 | #D- |
---|
| 567 | function IGCM_sys_TestFileBuffer { |
---|
| 568 | IGCM_debug_PushStack "IGCM_sys_TestFileBuffer" $@ |
---|
| 569 | typeset ExistFlag |
---|
| 570 | ExistFlag=$( [ -f $1 ] && echo 0 || echo 1 ) |
---|
| 571 | IGCM_debug_PopStack "IGCM_sys_TestFileBuffer" |
---|
| 572 | |
---|
| 573 | return ${ExistFlag} |
---|
| 574 | } |
---|
| 575 | |
---|
| 576 | #D-#================================================== |
---|
[622] | 577 | #D-function IGCM_sys_CountFileArchive |
---|
| 578 | #D-* Purpose: Count files on Archive filesystem |
---|
| 579 | #D-* Examples: |
---|
| 580 | #D- |
---|
| 581 | function IGCM_sys_CountFileArchive { |
---|
[623] | 582 | IGCM_debug_PushStack "IGCM_sys_CountFileArchive" $@ |
---|
| 583 | ls ${@} 2>/dev/null | wc -l |
---|
| 584 | if [ $? -gt 0 ] ; then |
---|
| 585 | echo "IGCM_sys_CountFileArchive : erreur." |
---|
| 586 | fi |
---|
| 587 | IGCM_debug_PopStack "IGCM_sys_CountFileArchive" |
---|
[622] | 588 | } |
---|
| 589 | |
---|
| 590 | #D-#================================================== |
---|
[623] | 591 | #D-function IGCM_sys_CountFileBuffer |
---|
| 592 | #D-* Purpose: Count files on Scratch filesystem |
---|
| 593 | #D-* Examples: |
---|
| 594 | #D- |
---|
| 595 | function IGCM_sys_CountFileBuffer { |
---|
| 596 | IGCM_debug_PushStack "IGCM_sys_CountFileBuffer" $@ |
---|
| 597 | ls ${@} 2>/dev/null | wc -l |
---|
| 598 | if [ $? -gt 0 ] ; then |
---|
| 599 | echo "IGCM_sys_CountFileBuffer : erreur." |
---|
| 600 | fi |
---|
| 601 | IGCM_debug_PopStack "IGCM_sys_CountFileBuffer" |
---|
| 602 | } |
---|
| 603 | |
---|
| 604 | #D-#================================================== |
---|
[622] | 605 | #D-function IGCM_sys_Tree |
---|
| 606 | #D-* Purpose: Tree directories with files on ${ARCHIVE} |
---|
| 607 | #D-* Examples: IGCM_sys_Tree ${R_IN} ${R_OUT} |
---|
| 608 | #D- |
---|
| 609 | function IGCM_sys_Tree { |
---|
[623] | 610 | IGCM_debug_PushStack "IGCM_sys_Tree" $@ |
---|
| 611 | if ( $DEBUG_sys ) ; then |
---|
| 612 | echo "IGCM_sys_Tree :" $@ |
---|
| 613 | fi |
---|
[622] | 614 | |
---|
[623] | 615 | \ls -lR ${@} |
---|
[622] | 616 | |
---|
[623] | 617 | IGCM_debug_PopStack "IGCM_sys_Tree" |
---|
[622] | 618 | } |
---|
| 619 | |
---|
| 620 | #D-#================================================== |
---|
| 621 | #D-function IGCM_sys_Tar |
---|
[623] | 622 | #D-* Purpose: master tar command |
---|
[622] | 623 | #D-* Examples: |
---|
| 624 | #D- |
---|
| 625 | function IGCM_sys_Tar { |
---|
[623] | 626 | IGCM_debug_PushStack "IGCM_sys_Tar" $@ |
---|
| 627 | if ( $DEBUG_sys ) ; then |
---|
| 628 | echo "IGCM_sys_Tar :" $@ |
---|
| 629 | fi |
---|
| 630 | \tar cf $@ |
---|
| 631 | if [ $? -gt 0 ] ; then |
---|
| 632 | echo "IGCM_sys_Tar : erreur." |
---|
| 633 | IGCM_debug_Exit "IGCM_sys_Tar" |
---|
| 634 | fi |
---|
| 635 | IGCM_debug_PopStack "IGCM_sys_Tar" |
---|
[622] | 636 | } |
---|
| 637 | |
---|
| 638 | #D-#================================================== |
---|
| 639 | #D-function IGCM_sys_UnTar |
---|
| 640 | #D-* Purpose: master un-tar command |
---|
| 641 | #D-* Examples: |
---|
| 642 | #D- |
---|
| 643 | function IGCM_sys_UnTar { |
---|
[623] | 644 | IGCM_debug_PushStack "IGCM_sys_UnTar" $@ |
---|
| 645 | if ( $DEBUG_sys ) ; then |
---|
| 646 | echo "IGCM_sys_UnTar :" $@ |
---|
| 647 | fi |
---|
| 648 | \tar xvf $1 |
---|
| 649 | if [ $? -gt 0 ] ; then |
---|
| 650 | echo "IGCM_sys_UnTar : erreur." |
---|
| 651 | IGCM_debug_Exit "IGCM_sys_UnTar" |
---|
| 652 | fi |
---|
| 653 | IGCM_debug_PopStack "IGCM_sys_UnTar" |
---|
[622] | 654 | } |
---|
| 655 | |
---|
| 656 | #D-#================================================== |
---|
| 657 | #D-function IGCM_sys_Qsub |
---|
| 658 | #D-* Purpose: Qsub new job |
---|
| 659 | #D-* Examples: |
---|
| 660 | #D- |
---|
| 661 | function IGCM_sys_Qsub { |
---|
[623] | 662 | IGCM_debug_PushStack "IGCM_sys_Qsub" $@ |
---|
| 663 | if ( $DEBUG_sys ) ; then |
---|
| 664 | echo "IGCM_sys_Qsub :" $@ |
---|
| 665 | fi |
---|
| 666 | typeset options |
---|
| 667 | if [ ${config_UserChoices_JobName}.${CumulPeriod} = "." ] ; then |
---|
| 668 | options=" -o ${Script_Output} -e ${Script_Output}" |
---|
| 669 | else |
---|
| 670 | options=" -o ${Script_Output} -e ${Script_Output} -r ${config_UserChoices_JobName}.${CumulPeriod}" |
---|
| 671 | fi |
---|
[622] | 672 | |
---|
[625] | 673 | /usr/bin/ccc_msub ${options} < $1 |
---|
[623] | 674 | if [ $? -gt 0 ] ; then |
---|
| 675 | echo "IGCM_sys_Qsub : erreur ${options} $1" |
---|
| 676 | IGCM_debug_Exit "IGCM_sys_Qsub" |
---|
| 677 | fi |
---|
| 678 | IGCM_debug_PopStack "IGCM_sys_Qsub" |
---|
[622] | 679 | } |
---|
| 680 | |
---|
| 681 | #D-#================================================== |
---|
| 682 | #D-function IGCM_sys_QsubPost |
---|
| 683 | #D-* Purpose: Qsub new job on scalaire |
---|
| 684 | #D-* Examples: |
---|
| 685 | #D- |
---|
| 686 | function IGCM_sys_QsubPost { |
---|
[623] | 687 | IGCM_debug_PushStack "IGCM_sys_QsubPost" $@ |
---|
| 688 | if ( $DEBUG_sys ) ; then |
---|
| 689 | echo "IGCM_sys_QsubPost :" $@ |
---|
| 690 | fi |
---|
| 691 | /usr/bin/ccc_msub -o ${POST_DIR}/${Script_Post_Output}.out -e ${POST_DIR}/${Script_Post_Output}.out ${libIGCM_POST}/$1.job |
---|
| 692 | if [ $? -gt 0 ] ; then |
---|
| 693 | echo "IGCM_sys_QsubPost : erreur " $@ |
---|
| 694 | IGCM_debug_Exit "IGCM_sys_QsubPost" |
---|
| 695 | fi |
---|
| 696 | IGCM_debug_PopStack "IGCM_sys_QsubPost" |
---|
[622] | 697 | } |
---|
| 698 | |
---|
| 699 | #D-************************* |
---|
[623] | 700 | #D- File transfer functions |
---|
[622] | 701 | #D-************************* |
---|
| 702 | #D- |
---|
| 703 | |
---|
| 704 | #D-#================================================== |
---|
| 705 | #D-function IGCM_sys_Rsync_out |
---|
| 706 | #D-* Purpose: treat return val of rsync |
---|
| 707 | #D-* Examples: IGCM_sys_Rsync_out out_RET_rsync |
---|
| 708 | #D- Error values and explanations can depend on your system version. |
---|
| 709 | function IGCM_sys_Rsync_out { |
---|
[623] | 710 | RET=$1 |
---|
| 711 | if [ ! $RET ] ; then |
---|
| 712 | echo "rsync error !" |
---|
| 713 | fi |
---|
[622] | 714 | |
---|
[623] | 715 | if [ $MYLANG = "fr" ]; then |
---|
| 716 | case $RET in |
---|
| 717 | 0) return ;; |
---|
| 718 | 1) echo "Erreur de rsync ; RERR_SYNTAX : " |
---|
| 719 | echo "Erreur de syntaxe ou d'utilisation." |
---|
| 720 | return;; |
---|
| 721 | 2) echo "Erreur de rsync ; RERR_PROTOCOL : " |
---|
| 722 | echo "Incompatibilité de protocole." |
---|
| 723 | return;; |
---|
| 724 | 3) echo "Erreur de rsync ; RERR_FILESELECT 3" |
---|
| 725 | echo "Erreurs lors de la sélection des fichiers d'entrée sortie et" |
---|
| 726 | echo "répertoires" |
---|
| 727 | return;; |
---|
| 728 | 4) echo "Erreur de rsync ; RERR_UNSUPPORTED" |
---|
| 729 | echo "Action demandée non supportée : une tentative de manipulation de" |
---|
| 730 | echo "fichiers 64-bits sur une plate-forme qui ne les supporte pas a" |
---|
| 731 | echo "été faite ; ou une option qui est supportée par le client mais" |
---|
| 732 | echo "pas par le serveur a été spécifiée." |
---|
| 733 | return;; |
---|
| 734 | 10) echo "Erreur de rsync ; RERR_SOCKETIO" |
---|
| 735 | echo "Erreur dans le socket d'entrée sortie" |
---|
| 736 | return;; |
---|
| 737 | 11) echo "Erreur de rsync ; RERR_FILEIO" |
---|
| 738 | echo "Erreur d'entrée sortie fichier" |
---|
| 739 | return;; |
---|
| 740 | 12) echo "Erreur de rsync ; RERR_STREAMIO" |
---|
| 741 | echo "Erreur dans flux de donnée du protocole rsync" |
---|
| 742 | return;; |
---|
| 743 | 13) echo "Erreur de rsync ; RERR_MESSAGEIO" |
---|
| 744 | echo "Erreur avec les diagnostics du programme" |
---|
| 745 | return;; |
---|
| 746 | 14) echo "Erreur de rsync ; RERR_IPC" |
---|
| 747 | echo "Erreur dans le code IPC" |
---|
| 748 | return;; |
---|
| 749 | 20) echo "Erreur de rsync ; RERR_SIGNAL" |
---|
| 750 | echo "SIGUSR1 ou SIGINT reçu" |
---|
| 751 | return;; |
---|
| 752 | 21) echo "Erreur de rsync ; RERR_WAITCHILD" |
---|
| 753 | echo "Une erreur retournée par waitpid()" |
---|
| 754 | return;; |
---|
| 755 | 22) echo "Erreur de rsync ; RERR_MALLOC" |
---|
| 756 | echo "Erreur lors de l'allocation des tampons de mémoire de coeur" |
---|
| 757 | return;; |
---|
| 758 | 23) echo "" |
---|
| 759 | echo "Erreur fichier inexistant" |
---|
| 760 | return;; |
---|
| 761 | 30) echo "Erreur de rsync ; RERR_TIMEOUT" |
---|
| 762 | echo "Temps d'attente écoulé dans l'envoi/réception de données" |
---|
| 763 | return;; |
---|
| 764 | *) echo "Erreur de rsync : code de retour de rsync inconnu :" $RET |
---|
| 765 | return;; |
---|
| 766 | esac |
---|
| 767 | elif [ $MYLANG = "en" ] ; then |
---|
| 768 | case $RET in |
---|
| 769 | 0) return;; |
---|
| 770 | 1) echo "rsync error : Syntax or usage error " |
---|
| 771 | return;; |
---|
| 772 | 2) echo "rsync error : Protocol incompatibility " |
---|
| 773 | return;; |
---|
| 774 | 3) echo "rsync error : Errors selecting input/output files, dirs" |
---|
| 775 | return;; |
---|
| 776 | 4) echo "rsync error : Requested action not supported: an attempt" |
---|
| 777 | echo "was made to manipulate 64-bit files on a platform that cannot support" |
---|
| 778 | echo "them; or an option was specified that is supported by the client and" |
---|
| 779 | echo "not by the server." |
---|
| 780 | return;; |
---|
| 781 | 5) echo "rsync error : Error starting client-server protocol" |
---|
| 782 | return;; |
---|
| 783 | 10) echo "rsync error : Error in socket I/O " |
---|
| 784 | return;; |
---|
| 785 | 11) echo "rsync error : Error in file I/O " |
---|
| 786 | return;; |
---|
| 787 | 12) echo "rsync error : Error in rsync protocol data stream " |
---|
| 788 | return;; |
---|
| 789 | 13) echo "rsync error : Errors with program diagnostics " |
---|
| 790 | return;; |
---|
| 791 | 14) echo "rsync error : Error in IPC code " |
---|
| 792 | return;; |
---|
| 793 | 20) echo "rsync error : Received SIGUSR1 or SIGINT " |
---|
| 794 | return;; |
---|
| 795 | 21) echo "rsync error : Some error returned by waitpid() " |
---|
| 796 | return;; |
---|
| 797 | 22) echo "rsync error : Error allocating core memory buffers " |
---|
| 798 | return;; |
---|
| 799 | 23) echo "rsync error : Partial transfer due to error" |
---|
| 800 | return;; |
---|
| 801 | 24) echo "rsync error : Partial transfer due to vanished source files" |
---|
| 802 | return;; |
---|
| 803 | 30) echo "rsync error : Timeout in data send/receive " |
---|
| 804 | return;; |
---|
| 805 | *) echo "rsync error : return code of rsync unknown :" $RET |
---|
| 806 | return;; |
---|
| 807 | esac |
---|
| 808 | else |
---|
| 809 | echo "unknown language $MYLANG." |
---|
| 810 | return |
---|
| 811 | fi |
---|
[622] | 812 | } |
---|
| 813 | |
---|
| 814 | #D-#================================================== |
---|
| 815 | #D-function IGCM_sys_Miror_libIGCM |
---|
| 816 | #D-* Purpose: Mirror libIGCM PATH and lib to cesium |
---|
| 817 | #D-* Examples: |
---|
| 818 | #D- |
---|
| 819 | function IGCM_sys_Mirror_libIGCM { |
---|
[623] | 820 | IGCM_debug_PushStack "IGCM_sys_Mirror_libIGCM" |
---|
| 821 | if ( $DEBUG_sys ) ; then |
---|
| 822 | echo "IGCM_sys_Mirror_libIGCM" |
---|
| 823 | fi |
---|
[622] | 824 | |
---|
[623] | 825 | typeset RET DEST |
---|
[622] | 826 | |
---|
[623] | 827 | mkdir -p ${HOME}/MIRROR/${PATHlibIGCM} |
---|
[622] | 828 | |
---|
[623] | 829 | echo ${RSYNC} ${RSYNC_opt} ${libIGCM} ${HOME}/MIRROR/${PATHlibIGCM} > out_rsync 2>&1 |
---|
| 830 | ${RSYNC} ${RSYNC_opt} ${libIGCM} ${HOME}/MIRROR/${PATHlibIGCM} >> out_rsync 2>&1 |
---|
| 831 | RET=$? |
---|
[622] | 832 | |
---|
[623] | 833 | if [ ${RET} -gt 0 ] ; then |
---|
| 834 | echo "IGCM_sys_Mirror_libIGCM Warning : no libIGCM on cesium." |
---|
| 835 | cat out_rsync |
---|
| 836 | fi |
---|
| 837 | IGCM_debug_PopStack "IGCM_sys_Mirror_libIGCM" |
---|
[622] | 838 | } |
---|
| 839 | |
---|
| 840 | #==================================================== |
---|
| 841 | #- Call IGCM_sys_Mirror_libIGCM now ! |
---|
| 842 | if ( $MirrorlibIGCM ) ; then |
---|
[623] | 843 | IGCM_sys_Mirror_libIGCM |
---|
[622] | 844 | fi |
---|
| 845 | |
---|
| 846 | #D-#================================================== |
---|
| 847 | #D-function IGCM_sys_Cp |
---|
| 848 | #D-* Purpose: generic cp |
---|
| 849 | #D-* Examples: |
---|
| 850 | #D- |
---|
| 851 | function IGCM_sys_Cp { |
---|
[623] | 852 | IGCM_debug_PushStack "IGCM_sys_Cp" $@ |
---|
| 853 | if ( $DEBUG_sys ) ; then |
---|
| 854 | echo "IGCM_sys_Cp :" $@ |
---|
| 855 | fi |
---|
[622] | 856 | |
---|
[623] | 857 | typeset RET |
---|
[622] | 858 | |
---|
[623] | 859 | echo cp $@ > out_rsync 2>&1 |
---|
| 860 | \cp $@ >> out_rsync 2>&1 |
---|
| 861 | RET=$? |
---|
[622] | 862 | |
---|
[623] | 863 | if [ ${RET} -gt 0 ] ; then |
---|
| 864 | echo "IGCM_sys_Cp : error." |
---|
| 865 | cat out_rsync |
---|
| 866 | IGCM_debug_Exit "IGCM_sys_Cp" |
---|
| 867 | else |
---|
| 868 | \rm out_rsync |
---|
| 869 | fi |
---|
| 870 | IGCM_debug_PopStack "IGCM_sys_Cp" |
---|
[622] | 871 | } |
---|
| 872 | |
---|
| 873 | #D-#================================================== |
---|
| 874 | #D-function IGCM_sys_Rm |
---|
| 875 | #D-* Purpose: generic rm |
---|
| 876 | #D-* Examples: |
---|
| 877 | #D- |
---|
| 878 | function IGCM_sys_Rm { |
---|
[623] | 879 | IGCM_debug_PushStack "IGCM_sys_Rm" -- $@ |
---|
| 880 | if ( $DEBUG_sys ) ; then |
---|
| 881 | echo "IGCM_sys_Rm :" $@ |
---|
| 882 | fi |
---|
[622] | 883 | |
---|
[623] | 884 | typeset RET |
---|
[622] | 885 | |
---|
[623] | 886 | echo rm $@ > out_rsync 2>&1 |
---|
| 887 | \rm $@ >> out_rsync 2>&1 |
---|
| 888 | RET=$? |
---|
[622] | 889 | |
---|
[623] | 890 | if [ ${RET} -gt 0 ] ; then |
---|
| 891 | echo "IGCM_sys_Rm : error." |
---|
| 892 | cat out_rsync |
---|
| 893 | IGCM_debug_Exit "IGCM_sys_Rm" |
---|
| 894 | else |
---|
| 895 | \rm out_rsync |
---|
| 896 | fi |
---|
| 897 | IGCM_debug_PopStack "IGCM_sys_Rm" |
---|
[622] | 898 | } |
---|
| 899 | |
---|
| 900 | #D-#================================================== |
---|
| 901 | #D-function IGCM_sys_RmRunDir |
---|
| 902 | #D-* Purpose: rm tmpdir (dummy function most of the time batch |
---|
| 903 | #D- scheduler will do the job) |
---|
| 904 | #D-* Examples: |
---|
| 905 | #D- |
---|
| 906 | function IGCM_sys_RmRunDir { |
---|
[623] | 907 | IGCM_debug_PushStack "IGCM_sys_RmRunDir" -- $@ |
---|
| 908 | if ( $DEBUG_sys ) ; then |
---|
| 909 | echo "IGCM_sys_RmRunDir :" $@ |
---|
| 910 | fi |
---|
[622] | 911 | |
---|
[623] | 912 | typeset RET |
---|
[622] | 913 | |
---|
[623] | 914 | echo rm $@ > out_rsync 2>&1 |
---|
| 915 | \rm $@ >> out_rsync 2>&1 |
---|
| 916 | RET=$? |
---|
[622] | 917 | |
---|
[623] | 918 | if [ ${RET} -gt 0 ] ; then |
---|
| 919 | echo "IGCM_sys_RmRunDir : error." |
---|
| 920 | cat out_rsync |
---|
| 921 | IGCM_debug_Exit "IGCM_sys_RmRunDir" |
---|
| 922 | else |
---|
| 923 | \rm out_rsync |
---|
| 924 | fi |
---|
| 925 | IGCM_debug_PopStack "IGCM_sys_RmRunDir" |
---|
[622] | 926 | } |
---|
| 927 | |
---|
| 928 | #D-#================================================== |
---|
| 929 | #D-function IGCM_sys_Mv |
---|
| 930 | #D-* Purpose: generic move |
---|
| 931 | #D-* Examples: |
---|
| 932 | #D- |
---|
| 933 | function IGCM_sys_Mv { |
---|
[623] | 934 | IGCM_debug_PushStack "IGCM_sys_Mv" $@ |
---|
| 935 | if ( $DEBUG_sys ) ; then |
---|
| 936 | echo "IGCM_sys_Mv :" $@ |
---|
| 937 | fi |
---|
[622] | 938 | |
---|
[623] | 939 | if [ $DRYRUN = 0 ]; then |
---|
[622] | 940 | |
---|
[623] | 941 | typeset RET |
---|
| 942 | |
---|
| 943 | echo mv $@ > out_rsync 2>&1 |
---|
| 944 | \mv $@ >> out_rsync 2>&1 |
---|
| 945 | RET=$? |
---|
| 946 | |
---|
| 947 | if [ ${RET} -gt 0 ] ; then |
---|
| 948 | echo "IGCM_sys_Mv : error in mv." |
---|
| 949 | cat out_rsync |
---|
| 950 | IGCM_debug_Exit "IGCM_sys_Mv" |
---|
[622] | 951 | else |
---|
[623] | 952 | \rm out_rsync |
---|
[622] | 953 | fi |
---|
[623] | 954 | else |
---|
| 955 | ( ${DEBUG_debug} ) && echo "DRYRUN mode = " $DRYRUN >> stack |
---|
| 956 | fi |
---|
[622] | 957 | |
---|
[623] | 958 | IGCM_debug_PopStack "IGCM_sys_Mv" |
---|
[622] | 959 | } |
---|
| 960 | |
---|
| 961 | #D-#================================================== |
---|
| 962 | #D-function IGCM_sys_Put_Dir |
---|
| 963 | #D-* Purpose: Copy a complete directory on $(ARCHIVE) |
---|
| 964 | #D-* Examples: |
---|
| 965 | #D- |
---|
| 966 | function IGCM_sys_Put_Dir { |
---|
[623] | 967 | IGCM_debug_PushStack "IGCM_sys_Put_Dir" $@ |
---|
| 968 | if ( $DEBUG_sys ) ; then |
---|
| 969 | echo "IGCM_sys_Put_Dir :" $@ |
---|
| 970 | fi |
---|
| 971 | if [ $DRYRUN = 0 ]; then |
---|
| 972 | if [ ! -d ${1} ] ; then |
---|
| 973 | echo "WARNING : IGCM_sys_Put_Dir ${1} DOES NOT EXIST ." |
---|
| 974 | IGCM_debug_PopStack "IGCM_sys_Put_Dir" |
---|
| 975 | return |
---|
[622] | 976 | fi |
---|
| 977 | |
---|
[623] | 978 | typeset RET |
---|
[622] | 979 | |
---|
[623] | 980 | # Only if we use rsync |
---|
| 981 | #IGCM_sys_TestDirArchive $( dirname $2 ) |
---|
| 982 | # |
---|
| 983 | #USUAL WAY |
---|
| 984 | \cp -r $1 $2 > out_rsync 2>&1 |
---|
| 985 | RET=$? |
---|
[622] | 986 | |
---|
[623] | 987 | if [ ${RET} -gt 0 ] ; then |
---|
| 988 | echo "IGCM_sys_Put_Dir : error." |
---|
| 989 | cat out_rsync |
---|
| 990 | IGCM_debug_Exit "IGCM_sys_Put_Dir" |
---|
[622] | 991 | else |
---|
[623] | 992 | \rm out_rsync |
---|
[622] | 993 | fi |
---|
[623] | 994 | else |
---|
| 995 | ( ${DEBUG_debug} ) && echo "DRYRUN mode = " $DRYRUN >> stack |
---|
| 996 | fi |
---|
| 997 | IGCM_debug_PopStack "IGCM_sys_Put_Dir" |
---|
[622] | 998 | } |
---|
| 999 | |
---|
| 1000 | #D-#================================================== |
---|
| 1001 | #D-function IGCM_sys_Get_Dir |
---|
[623] | 1002 | #D-* Purpose: Copy a complete directory from ${ARCHIVE} |
---|
[622] | 1003 | #D-* Examples: |
---|
| 1004 | #D- |
---|
| 1005 | function IGCM_sys_Get_Dir { |
---|
[623] | 1006 | IGCM_debug_PushStack "IGCM_sys_Get_Dir" $@ |
---|
| 1007 | if ( $DEBUG_sys ) ; then |
---|
| 1008 | echo "IGCM_sys_Get_Dir :" $@ |
---|
| 1009 | fi |
---|
| 1010 | if [ $DRYRUN = 0 ]; then |
---|
| 1011 | # if [ ! -d ${1} ] ; then |
---|
| 1012 | # echo "WARNING : IGCM_sys_Get_Dir ${1} DOES NOT EXIST ." |
---|
| 1013 | # IGCM_debug_PopStack "IGCM_sys_Get_Dir" |
---|
| 1014 | # return |
---|
| 1015 | # fi |
---|
[622] | 1016 | |
---|
[623] | 1017 | typeset RET |
---|
[622] | 1018 | |
---|
[676] | 1019 | # Only if we use rsync |
---|
| 1020 | #IGCM_sys_TestDirArchive $( dirname $2 ) |
---|
| 1021 | # |
---|
| 1022 | #USUAL WAY |
---|
| 1023 | # add get (to demigrate all offline files) to reduce time of this command : |
---|
[623] | 1024 | ccc_hsm get $1/* |
---|
| 1025 | \cp -r $1 $2 > out_rsync 2>&1 |
---|
| 1026 | RET=$? |
---|
[622] | 1027 | |
---|
[623] | 1028 | if [ ${RET} -gt 0 ] ; then |
---|
| 1029 | echo "IGCM_sys_Get_Dir : error." |
---|
| 1030 | cat out_rsync |
---|
| 1031 | IGCM_debug_Exit "IGCM_sys_Get_Dir" |
---|
[622] | 1032 | else |
---|
[623] | 1033 | \rm out_rsync |
---|
[622] | 1034 | fi |
---|
[623] | 1035 | else |
---|
| 1036 | ( ${DEBUG_debug} ) && echo "DRYRUN mode = " $DRYRUN >> stack |
---|
| 1037 | fi |
---|
| 1038 | IGCM_debug_PopStack "IGCM_sys_Get_Dir" |
---|
[622] | 1039 | } |
---|
| 1040 | |
---|
| 1041 | #D-#================================================== |
---|
| 1042 | #D-function IGCM_sys_Get_Master |
---|
| 1043 | #D-* Purpose: Copy a complete directory from MASTER filesystem |
---|
| 1044 | #D-* Examples: |
---|
| 1045 | #D- |
---|
| 1046 | function IGCM_sys_Get_Master { |
---|
[623] | 1047 | IGCM_debug_PushStack "IGCM_sys_Get_Master" $@ |
---|
| 1048 | if ( $DEBUG_sys ) ; then |
---|
| 1049 | echo "IGCM_sys_Get_Master :" $@ |
---|
| 1050 | fi |
---|
| 1051 | if [ $DRYRUN = 0 ]; then |
---|
[640] | 1052 | if ( [ ! -d ${1} ] && [ ! -f ${1} ] ) ; then |
---|
[623] | 1053 | echo "WARNING : IGCM_sys_Get_Master ${1} DOES NOT EXIST ." |
---|
| 1054 | IGCM_debug_PopStack "IGCM_sys_Get_Master" |
---|
| 1055 | return |
---|
[622] | 1056 | fi |
---|
| 1057 | |
---|
[623] | 1058 | typeset RET |
---|
[622] | 1059 | |
---|
[623] | 1060 | #USUAL WAY |
---|
[669] | 1061 | \cp -rL $1 $2 > out_rsync 2>&1 |
---|
[623] | 1062 | RET=$? |
---|
[622] | 1063 | |
---|
[623] | 1064 | if [ ${RET} -gt 0 ] ; then |
---|
| 1065 | echo "IGCM_sys_Get_Master : error." |
---|
| 1066 | cat out_rsync |
---|
| 1067 | IGCM_debug_Exit "IGCM_sys_Get_Master" |
---|
[622] | 1068 | else |
---|
[623] | 1069 | \rm out_rsync |
---|
[622] | 1070 | fi |
---|
[623] | 1071 | else |
---|
| 1072 | ( ${DEBUG_debug} ) && echo "DRYRUN mode = " $DRYRUN >> stack |
---|
| 1073 | fi |
---|
| 1074 | IGCM_debug_PopStack "IGCM_sys_Get_Master" |
---|
[622] | 1075 | } |
---|
| 1076 | |
---|
| 1077 | #D-#================================================== |
---|
| 1078 | #D-function IGCM_sys_Put_Rest |
---|
[623] | 1079 | #D-* Purpose: Put computied restarts on ${ARCHIVE}. |
---|
[622] | 1080 | #D- File and target directory must exist. |
---|
| 1081 | #D-* Examples: |
---|
| 1082 | #D- |
---|
| 1083 | function IGCM_sys_Put_Rest { |
---|
[623] | 1084 | IGCM_debug_PushStack "IGCM_sys_Put_Rest" $@ |
---|
| 1085 | if ( $DEBUG_sys ) ; then |
---|
| 1086 | echo "IGCM_sys_Put_Rest :" $@ |
---|
| 1087 | fi |
---|
| 1088 | if [ $DRYRUN = 0 ]; then |
---|
| 1089 | if [ ! -f ${1} ] ; then |
---|
| 1090 | echo "ERROR : IGCM_sys_Put_Rest ${1} DOES NOT EXIST ." |
---|
| 1091 | IGCM_debug_Exit "IGCM_sys_Put_Rest" |
---|
[622] | 1092 | fi |
---|
| 1093 | |
---|
[623] | 1094 | typeset RET |
---|
| 1095 | # |
---|
| 1096 | if [ X${JobType} = XRUN ] ; then |
---|
| 1097 | IGCM_sys_Chmod 444 ${1} |
---|
| 1098 | fi |
---|
[622] | 1099 | |
---|
[623] | 1100 | # |
---|
| 1101 | # USUAL WAY |
---|
| 1102 | \cp $1 $2 > out_rsync 2>&1 |
---|
| 1103 | RET=$? |
---|
[622] | 1104 | |
---|
[623] | 1105 | # #RSYNC WITH NETWORK SSH CALL |
---|
| 1106 | # echo ${RSYNC} ${RSYNC_opt} -e ssh ${RUN_DIR}/$1 ${STOREHOST}:${2} > out_rsync 2>&1 |
---|
| 1107 | # ${RSYNC} ${RSYNC_opt} -e ssh ${RUN_DIR}/$1 ${STOREHOST}:${2} >> out_rsync 2>&1 |
---|
[622] | 1108 | |
---|
[623] | 1109 | # #RSYNC WITH NFS USE |
---|
| 1110 | # echo ${RSYNC} ${RSYNC_opt} ${RUN_DIR}/$1 ${2} > out_rsync 2>&1 |
---|
| 1111 | # ${RSYNC} ${RSYNC_opt} ${RUN_DIR}/$1 ${2} >> out_rsync 2>&1 |
---|
[622] | 1112 | |
---|
[623] | 1113 | # RET=$? |
---|
| 1114 | # IGCM_sys_Rsync_out $RET |
---|
[622] | 1115 | |
---|
[623] | 1116 | # ${libIGCM}/libIGCM_sys/IGCM_analyse_rsync_out.awk out_rsync |
---|
| 1117 | # (( RET=RET+$? )) |
---|
| 1118 | |
---|
| 1119 | if [ ${RET} -gt 0 ] ; then |
---|
| 1120 | echo "IGCM_sys_Put_Rest : error." |
---|
| 1121 | cat out_rsync |
---|
| 1122 | IGCM_debug_Exit "IGCM_sys_Put_Rest" |
---|
[622] | 1123 | else |
---|
[623] | 1124 | \rm out_rsync |
---|
[622] | 1125 | fi |
---|
[623] | 1126 | else |
---|
| 1127 | ( ${DEBUG_debug} ) && echo "DRYRUN mode = " $DRYRUN >> stack |
---|
| 1128 | fi |
---|
| 1129 | IGCM_debug_PopStack "IGCM_sys_Put_Rest" |
---|
[622] | 1130 | } |
---|
| 1131 | |
---|
| 1132 | #D-#================================================== |
---|
[623] | 1133 | #D-function IGCM_sys_PutBuffer_Rest |
---|
| 1134 | #D-* Purpose: Put computied restarts on ${SCRATCHDIR}. |
---|
| 1135 | #D- File and target directory must exist. |
---|
| 1136 | #D-* Examples: |
---|
| 1137 | #D- |
---|
| 1138 | function IGCM_sys_PutBuffer_Rest { |
---|
| 1139 | IGCM_debug_PushStack "IGCM_sys_PutBuffer_Rest" $@ |
---|
| 1140 | if ( $DEBUG_sys ) ; then |
---|
| 1141 | echo "IGCM_sys_PutBuffer_Rest :" $@ |
---|
| 1142 | fi |
---|
| 1143 | if [ $DRYRUN = 0 ]; then |
---|
| 1144 | if [ ! -f ${1} ] ; then |
---|
| 1145 | echo "ERROR : IGCM_sys_PutBuffer_Rest ${1} DOES NOT EXIST ." |
---|
| 1146 | IGCM_debug_Exit "IGCM_sys_PutBuffer_Rest" |
---|
| 1147 | fi |
---|
| 1148 | |
---|
| 1149 | typeset RET |
---|
| 1150 | # |
---|
| 1151 | if [ X${JobType} = XRUN ] ; then |
---|
| 1152 | IGCM_sys_Chmod 444 ${1} |
---|
| 1153 | fi |
---|
| 1154 | |
---|
| 1155 | # |
---|
| 1156 | # USUAL WAY |
---|
| 1157 | \cp $1 $2 > out_rsync 2>&1 |
---|
| 1158 | RET=$? |
---|
| 1159 | |
---|
| 1160 | if [ ${RET} -gt 0 ] ; then |
---|
| 1161 | echo "IGCM_sys_PutBuffer_Rest : error." |
---|
| 1162 | cat out_rsync |
---|
| 1163 | IGCM_debug_Exit "IGCM_sys_PutBuffer_Rest" |
---|
| 1164 | else |
---|
| 1165 | \rm out_rsync |
---|
| 1166 | fi |
---|
| 1167 | else |
---|
| 1168 | ( ${DEBUG_debug} ) && echo "DRYRUN mode = " $DRYRUN >> stack |
---|
| 1169 | fi |
---|
| 1170 | IGCM_debug_PopStack "IGCM_sys_PutBuffer_Rest" |
---|
| 1171 | } |
---|
| 1172 | |
---|
| 1173 | #D-#================================================== |
---|
[622] | 1174 | #D-function IGCM_sys_Put_Out |
---|
[623] | 1175 | #D-* Purpose: Copy a file on ${ARCHIVE} after having chmod it in readonly |
---|
[622] | 1176 | #D-* Examples: |
---|
| 1177 | #D- |
---|
| 1178 | function IGCM_sys_Put_Out { |
---|
[623] | 1179 | IGCM_debug_PushStack "IGCM_sys_Put_Out" $@ |
---|
| 1180 | if ( $DEBUG_sys ) ; then |
---|
| 1181 | echo "IGCM_sys_Put_Out :" $@ |
---|
| 1182 | fi |
---|
[667] | 1183 | |
---|
| 1184 | typeset NB_ESSAI DELAI RET i |
---|
| 1185 | |
---|
| 1186 | # number of tentative |
---|
[668] | 1187 | NB_ESSAI=3 |
---|
[667] | 1188 | # time delay between tentative |
---|
[668] | 1189 | DELAI=2 |
---|
[667] | 1190 | |
---|
[623] | 1191 | if [ $DRYRUN = 0 ]; then |
---|
| 1192 | if [ ! -f ${1} ] ; then |
---|
| 1193 | echo "WARNING : IGCM_sys_Put_Out ${1} DOES NOT EXIST ." |
---|
| 1194 | IGCM_debug_PopStack "IGCM_sys_Put_Out" |
---|
| 1195 | return 1 |
---|
[622] | 1196 | fi |
---|
[623] | 1197 | # |
---|
| 1198 | IGCM_sys_MkdirArchive $( dirname $2 ) |
---|
| 1199 | # |
---|
[622] | 1200 | |
---|
[623] | 1201 | #===================================================== |
---|
| 1202 | # COMMENT OUT DOUBLE COPY ON SCRATCHDIR |
---|
| 1203 | #===================================================== |
---|
[622] | 1204 | |
---|
[623] | 1205 | #echo ${2} | grep "${R_OUT}" > /dev/null 2>&1 |
---|
| 1206 | #if [ $? -eq 0 ] ; then |
---|
| 1207 | # typeset WORKPATH FILEPATH |
---|
| 1208 | # WORKPATH=$( dirname $2 | sed -e "s|${R_OUT}|${R_BUF}|" ) |
---|
| 1209 | # IGCM_sys_MkdirWork ${WORKPATH} |
---|
| 1210 | # FILEPATH=${WORKPATH}/$( basename $2 ) |
---|
| 1211 | # # |
---|
| 1212 | # IGCM_sys_Cp ${1} ${FILEPATH} |
---|
| 1213 | #fi |
---|
[622] | 1214 | |
---|
[623] | 1215 | if [ X${JobType} = XRUN ] ; then |
---|
| 1216 | if [ X${3} = X ] ; then |
---|
| 1217 | IGCM_sys_Chmod 444 ${1} |
---|
| 1218 | fi |
---|
| 1219 | fi |
---|
| 1220 | # |
---|
[667] | 1221 | |
---|
| 1222 | (( i = 0 )) |
---|
| 1223 | while [ $i -lt $NB_ESSAI ] ; do |
---|
[623] | 1224 | # USUAL WAY |
---|
[667] | 1225 | \cp $1 $2 > out_rsync 2>&1 |
---|
| 1226 | RET=$? |
---|
| 1227 | if [ ${RET} -gt 0 ]; then |
---|
[676] | 1228 | IGCM_debug_Print 2 "IGCM_sys_Put_Out : cp failed ${i}/${NB_ESSAI}" |
---|
| 1229 | IGCM_debug_Print 2 "IGCM_sys_Put_Out : sleep ${DELAI} seconds and try again." |
---|
| 1230 | sleep $DELAI |
---|
[667] | 1231 | else |
---|
[676] | 1232 | break |
---|
[667] | 1233 | fi |
---|
| 1234 | (( i = i + 1 )) |
---|
| 1235 | done |
---|
[622] | 1236 | |
---|
[623] | 1237 | # #RSYNC WITH NETWORK SSH CALL |
---|
| 1238 | # echo ${RSYNC} ${RSYNC_opt} -e ssh ${RUN_DIR}/$1 ${STOREHOST}:${2} > out_rsync 2>&1 |
---|
| 1239 | # ${RSYNC} ${RSYNC_opt} -e ssh ${RUN_DIR}/$1 ${STOREHOST}:${2} >> out_rsync 2>&1 |
---|
[622] | 1240 | |
---|
[623] | 1241 | # #RSYNC WITH NFS USE |
---|
| 1242 | # echo ${RSYNC} ${RSYNC_opt} ${RUN_DIR}/$1 ${2} > out_rsync 2>&1 |
---|
| 1243 | # ${RSYNC} ${RSYNC_opt} ${RUN_DIR}/$1 ${2} >> out_rsync 2>&1 |
---|
[622] | 1244 | |
---|
[623] | 1245 | # RET=$? |
---|
| 1246 | # IGCM_sys_Rsync_out $RET |
---|
[622] | 1247 | |
---|
[623] | 1248 | # ${libIGCM}/libIGCM_sys/IGCM_analyse_rsync_out.awk out_rsync |
---|
| 1249 | # (( RET=RET+$? )) |
---|
[622] | 1250 | |
---|
[623] | 1251 | if [ ${RET} -gt 0 ] ; then |
---|
| 1252 | echo "IGCM_sys_Put_Out : error." |
---|
| 1253 | cat out_rsync |
---|
| 1254 | IGCM_debug_Exit "IGCM_sys_Put_Out" |
---|
[622] | 1255 | else |
---|
[623] | 1256 | \rm out_rsync |
---|
[622] | 1257 | fi |
---|
[623] | 1258 | else |
---|
| 1259 | ( ${DEBUG_debug} ) && echo "DRYRUN mode = " $DRYRUN >> stack |
---|
| 1260 | fi |
---|
| 1261 | IGCM_debug_PopStack "IGCM_sys_Put_Out" |
---|
| 1262 | return 0 |
---|
[622] | 1263 | } |
---|
| 1264 | |
---|
| 1265 | #D-#================================================== |
---|
[623] | 1266 | #D-function IGCM_sys_PutBuffer_Out |
---|
| 1267 | #D-* Purpose: Copy a file on ${SCRATCHDIR} after having chmod it in readonly |
---|
| 1268 | #D-* Examples: |
---|
| 1269 | #D- |
---|
| 1270 | function IGCM_sys_PutBuffer_Out { |
---|
| 1271 | IGCM_debug_PushStack "IGCM_sys_PutBuffer_Out" $@ |
---|
| 1272 | if ( $DEBUG_sys ) ; then |
---|
| 1273 | echo "IGCM_sys_PutBuffer_Out :" $@ |
---|
| 1274 | fi |
---|
| 1275 | if [ $DRYRUN = 0 ]; then |
---|
| 1276 | if [ ! -f ${1} ] ; then |
---|
| 1277 | echo "WARNING : IGCM_sys_PutBuffer_Out ${1} DOES NOT EXIST ." |
---|
| 1278 | IGCM_debug_PopStack "IGCM_sys_PutBuffer_Out" |
---|
| 1279 | return 1 |
---|
| 1280 | fi |
---|
| 1281 | # |
---|
| 1282 | IGCM_sys_Mkdir $( dirname $2 ) |
---|
| 1283 | # |
---|
| 1284 | typeset RET |
---|
| 1285 | |
---|
| 1286 | if [ X${JobType} = XRUN ] ; then |
---|
| 1287 | if [ X${3} = X ] ; then |
---|
| 1288 | IGCM_sys_Chmod 444 ${1} |
---|
| 1289 | fi |
---|
| 1290 | fi |
---|
| 1291 | # |
---|
| 1292 | # USUAL WAY |
---|
| 1293 | \cp $1 $2 > out_rsync 2>&1 |
---|
| 1294 | RET=$? |
---|
| 1295 | |
---|
| 1296 | if [ ${RET} -gt 0 ] ; then |
---|
| 1297 | echo "IGCM_sys_PutBuffer_Out : error." |
---|
| 1298 | cat out_rsync |
---|
| 1299 | IGCM_debug_Exit "IGCM_sys_PutBuffer_Out" |
---|
| 1300 | else |
---|
| 1301 | \rm out_rsync |
---|
| 1302 | fi |
---|
| 1303 | else |
---|
| 1304 | ( ${DEBUG_debug} ) && echo "DRYRUN mode = " $DRYRUN >> stack |
---|
| 1305 | fi |
---|
| 1306 | IGCM_debug_PopStack "IGCM_sys_PutBuffer_Out" |
---|
| 1307 | return 0 |
---|
| 1308 | } |
---|
| 1309 | |
---|
| 1310 | #D-#================================================== |
---|
[622] | 1311 | #D-function IGCM_sys_Get |
---|
| 1312 | #D-* Purpose: Get a file from ${ARCHIVE} |
---|
| 1313 | #D-* Examples: IGCM_sys_Get myfile /destpath/myfile_with_PREFIX |
---|
| 1314 | #D- IGCM_sys_Get /l Array_contain_myfiles /destpath/ |
---|
| 1315 | function IGCM_sys_Get { |
---|
[623] | 1316 | IGCM_debug_PushStack "IGCM_sys_Get" $@ |
---|
[622] | 1317 | |
---|
[623] | 1318 | typeset DEST RET dm_liste ifile target file_work |
---|
[667] | 1319 | typeset NB_ESSAI DELAI status i |
---|
[622] | 1320 | |
---|
[623] | 1321 | if ( $DEBUG_sys ) ; then |
---|
| 1322 | echo "IGCM_sys_Get :" $@ |
---|
| 1323 | fi |
---|
[667] | 1324 | |
---|
| 1325 | # number of tentative |
---|
[668] | 1326 | NB_ESSAI=3 |
---|
[667] | 1327 | # time delay between tentative |
---|
[668] | 1328 | DELAI=2 |
---|
[667] | 1329 | |
---|
[623] | 1330 | if [ $DRYRUN -le 2 ]; then |
---|
| 1331 | if [ X${1} = X'/l' ] ; then |
---|
| 1332 | # test if the first file is present in the old computation : |
---|
| 1333 | eval set +A dm_liste \${${2}} |
---|
| 1334 | else |
---|
| 1335 | eval set +A dm_liste ${1} |
---|
[622] | 1336 | fi |
---|
[623] | 1337 | eval DEST=\${${#}} |
---|
[622] | 1338 | |
---|
[623] | 1339 | #===================================================== |
---|
| 1340 | # COMMENT OUT DOUBLE COPY ON SCRATCHDIR |
---|
| 1341 | #===================================================== |
---|
[622] | 1342 | |
---|
[623] | 1343 | # Is it an R_OUT file (not R_IN) ? |
---|
| 1344 | #echo ${dm_liste[0]} | grep "${R_OUT}" > /dev/null 2>&1 |
---|
| 1345 | #if [ $? -eq 0 ] ; then |
---|
| 1346 | # # Yes ? then we try to get it in SCRATCHDIR |
---|
| 1347 | # set +A file_work $( echo ${dm_liste[*]} | sed -e "s|${R_OUT}|${R_BUF}|g" ) |
---|
| 1348 | # if [ -f ${file_work[0]} ] ; then |
---|
| 1349 | # IGCM_sys_Cp ${file_work[*]} ${DEST} |
---|
| 1350 | # IGCM_debug_PopStack "IGCM_sys_Get" |
---|
| 1351 | # return |
---|
| 1352 | # fi |
---|
| 1353 | #fi |
---|
[622] | 1354 | |
---|
[623] | 1355 | ccc_hsm get ${dm_liste[*]} > out_rsync 2>&1 |
---|
| 1356 | RET=$? |
---|
| 1357 | if [ ${RET} -gt 0 ] ; then |
---|
| 1358 | echo "WARNING IGCM_sys_Get : demigration error." |
---|
| 1359 | cat out_rsync |
---|
| 1360 | echo "WARNING IGCM_sys_Get : will stop later if the cp fails." |
---|
| 1361 | fi |
---|
[622] | 1362 | |
---|
[623] | 1363 | #if [ ${RET} -gt 0 ] ; then |
---|
| 1364 | # if [ ! "X$( grep "Lost dmusrcmd connection" out_rsync )" = "X" ] ; then |
---|
| 1365 | # cat out_rsync |
---|
| 1366 | # echo "WARNING IGCM_sys_Get : Lost dmusrcmd connection : " |
---|
| 1367 | # sleep 30 |
---|
| 1368 | # echo "We try another time" |
---|
| 1369 | ## dmget ${dm_liste[*]} > out_rsync 2>&1 |
---|
| 1370 | # ccc_hsm get ${dm_liste[*]} > out_rsync 2>&1 |
---|
| 1371 | # RET=$? |
---|
| 1372 | # if [ ${RET} -gt 0 ] ; then |
---|
| 1373 | # echo "ERROR IGCM_sys_Get : again demigration error :" |
---|
| 1374 | # cat out_rsync |
---|
| 1375 | # IGCM_debug_Exit "IGCM_sys_Get" |
---|
| 1376 | # fi |
---|
| 1377 | # else |
---|
| 1378 | # echo "ERROR IGCM_sys_Get : demigration error :" |
---|
| 1379 | # cat out_rsync |
---|
| 1380 | # IGCM_debug_Exit "IGCM_sys_Get" |
---|
| 1381 | # fi |
---|
| 1382 | #fi |
---|
[622] | 1383 | |
---|
[623] | 1384 | #USUAL WAY |
---|
| 1385 | if [ X${1} = X'/l' ] ; then |
---|
| 1386 | (( RET=0 )) |
---|
| 1387 | for target in ${dm_liste[*]} ; do |
---|
| 1388 | local_file=$( basename ${target} ) |
---|
[667] | 1389 | (( i = 0 )) |
---|
[668] | 1390 | # test if the target file is present before the loop |
---|
| 1391 | IGCM_sys_TestFileArchive ${target} |
---|
| 1392 | RET=$? |
---|
| 1393 | if [ ${RET} -gt 0 ] ; then |
---|
| 1394 | echo "IGCM_sys_Get, ERROR : regular file ${dm_liste[0]} DOES NOT EXIST ." |
---|
| 1395 | IGCM_debug_Exit "IGCM_sys_Get" |
---|
| 1396 | else |
---|
| 1397 | while [ $i -lt $NB_ESSAI ] ; do |
---|
| 1398 | \cp ${target} ${DEST}/${local_file} >> out_rsync 2>&1 |
---|
| 1399 | status=$? |
---|
| 1400 | if [ ${status} -gt 0 ]; then |
---|
[676] | 1401 | IGCM_debug_Print 2 "IGCM_sys_Get : cp failed ${i}/${NB_ESSAI}" |
---|
| 1402 | IGCM_debug_Print 2 "IGCM_sys_Get : sleep ${DELAI} seconds and try again." |
---|
| 1403 | sleep $DELAI |
---|
[668] | 1404 | else |
---|
[676] | 1405 | break |
---|
[668] | 1406 | fi |
---|
| 1407 | (( i = i + 1 )) |
---|
| 1408 | done |
---|
| 1409 | (( RET = RET + status )) |
---|
| 1410 | fi |
---|
[623] | 1411 | done |
---|
| 1412 | else |
---|
| 1413 | \cp ${dm_liste} ${DEST} >> out_rsync 2>&1 |
---|
| 1414 | RET=$? |
---|
| 1415 | fi |
---|
[622] | 1416 | |
---|
[623] | 1417 | # #RSYNC WITH NETWORK SSH CALL |
---|
| 1418 | # echo ${RSYNC} ${RSYNC_opt} -e ssh ${STOREHOST}:"${dm_liste}" ${STOREHOST}:${RUN_DIR}/${DEST} > out_rsync 2>&1 |
---|
| 1419 | # ${RSYNC} ${RSYNC_opt} -e ssh ${STOREHOST}:"${dm_liste}" ${STOREHOST}:${RUN_DIR}/${DEST} >> out_rsync 2>&1 |
---|
[622] | 1420 | |
---|
[623] | 1421 | # #RSYNC WITH NFS USE |
---|
| 1422 | # echo ${RSYNC} ${RSYNC_opt} ${dm_liste} ${RUN_DIR}/${DEST} > out_rsync 2>&1 |
---|
| 1423 | # ${RSYNC} ${RSYNC_opt} ${dm_liste} ${RUN_DIR}/${DEST} >> out_rsync 2>&1 |
---|
[622] | 1424 | |
---|
[623] | 1425 | # RET=$? |
---|
| 1426 | # IGCM_sys_Rsync_out $RET |
---|
[622] | 1427 | |
---|
[623] | 1428 | # ${libIGCM}/libIGCM_sys/IGCM_analyse_rsync_out.awk out_rsync |
---|
| 1429 | # (( RET=RET+$? )) |
---|
[622] | 1430 | |
---|
[623] | 1431 | if [ ${RET} -gt 0 ] ; then |
---|
| 1432 | echo "IGCM_sys_Get : copy error." |
---|
| 1433 | cat out_rsync |
---|
| 1434 | IGCM_debug_Exit "IGCM_sys_Get" |
---|
| 1435 | else |
---|
| 1436 | \rm out_rsync |
---|
| 1437 | fi |
---|
| 1438 | else |
---|
| 1439 | ( ${DEBUG_debug} ) && echo "DRYRUN mode = " $DRYRUN >> stack |
---|
| 1440 | fi |
---|
| 1441 | IGCM_debug_PopStack "IGCM_sys_Get" |
---|
| 1442 | } |
---|
[622] | 1443 | |
---|
[623] | 1444 | #D-#================================================== |
---|
| 1445 | #D-function IGCM_sys_GetBuffer |
---|
| 1446 | #D-* Purpose: Get a file from ${SCRATCHDIR} |
---|
| 1447 | #D-* Examples: IGCM_sys_GetBuffer myfile /destpath/myfile_with_PREFIX |
---|
| 1448 | #D- IGCM_sys_GetBuffer /l Array_contain_myfiles /destpath/ |
---|
| 1449 | function IGCM_sys_GetBuffer { |
---|
| 1450 | IGCM_debug_PushStack "IGCM_sys_GetBuffer" $@ |
---|
| 1451 | |
---|
| 1452 | typeset DEST RET buf_liste ifile target file_work |
---|
| 1453 | |
---|
| 1454 | if ( $DEBUG_sys ) ; then |
---|
| 1455 | echo "IGCM_sys_GetBuffer :" $@ |
---|
| 1456 | fi |
---|
| 1457 | if [ $DRYRUN -le 2 ]; then |
---|
| 1458 | if [ X${1} = X'/l' ] ; then |
---|
| 1459 | # test if the first file is present in the old computation : |
---|
| 1460 | eval set +A buf_liste \${${2}} |
---|
[622] | 1461 | else |
---|
[623] | 1462 | eval set +A buf_liste ${1} |
---|
[622] | 1463 | fi |
---|
[623] | 1464 | eval DEST=\${${#}} |
---|
| 1465 | |
---|
| 1466 | #USUAL WAY |
---|
| 1467 | if [ X${1} = X'/l' ] ; then |
---|
| 1468 | (( RET=0 )) |
---|
| 1469 | for target in ${buf_liste[*]} ; do |
---|
| 1470 | local_file=$( basename ${target} ) |
---|
| 1471 | \cp ${target} ${DEST}/${local_file} >> out_rsync 2>&1 |
---|
| 1472 | (( RET = RET + $? )) |
---|
| 1473 | done |
---|
| 1474 | else |
---|
| 1475 | \cp ${buf_liste} ${DEST} >> out_rsync 2>&1 |
---|
| 1476 | RET=$? |
---|
| 1477 | fi |
---|
| 1478 | |
---|
| 1479 | if [ ${RET} -gt 0 ] ; then |
---|
| 1480 | echo "IGCM_sys_GetBuffer : copy error." |
---|
| 1481 | cat out_rsync |
---|
| 1482 | IGCM_debug_Exit "IGCM_sys_GetBuffer" |
---|
| 1483 | else |
---|
| 1484 | \rm out_rsync |
---|
| 1485 | fi |
---|
| 1486 | else |
---|
| 1487 | ( ${DEBUG_debug} ) && echo "DRYRUN mode = " $DRYRUN >> stack |
---|
| 1488 | fi |
---|
| 1489 | IGCM_debug_PopStack "IGCM_sys_GetBuffer" |
---|
[622] | 1490 | } |
---|
| 1491 | |
---|
| 1492 | #D-#================================================== |
---|
| 1493 | #D-function IGCM_sys_GetDate_FichWork |
---|
| 1494 | #D-* Purpose: donne la date filesys d'un fichier sur le filesystem WORK |
---|
| 1495 | #D-* Examples: |
---|
| 1496 | #D- |
---|
| 1497 | function IGCM_sys_GetDate_FichWork { |
---|
[623] | 1498 | IGCM_debug_PushStack "IGCM_sys_FichWork" $@ |
---|
| 1499 | if ( $DEBUG_sys ) ; then |
---|
| 1500 | echo "IGCM_sys_GetDate_FichWork :" $@ |
---|
| 1501 | fi |
---|
| 1502 | typeset dateF |
---|
| 1503 | set +A dateF -- $( ls -l --full-time --time-style='+%Y%m%d%H%M%S' ${1} ) |
---|
| 1504 | eval ${2}=${dateF[5]} |
---|
| 1505 | |
---|
[622] | 1506 | # donne la date filesys d'un fichier sur la machine work |
---|
[623] | 1507 | IGCM_debug_PopStack "IGCM_sys_FichWork" |
---|
[622] | 1508 | } |
---|
| 1509 | |
---|
| 1510 | #D-#================================================== |
---|
| 1511 | #D-function IGCM_sys_GetDate_FichArchive |
---|
[623] | 1512 | #D-* Purpose: donne la date filesys d'un fichier sur le filesystem ARCHIVE |
---|
[622] | 1513 | #D-* Examples: |
---|
| 1514 | #D- |
---|
| 1515 | function IGCM_sys_GetDate_FichArchive { |
---|
[623] | 1516 | IGCM_debug_PushStack "IGCM_sys_FichArchive" $@ |
---|
| 1517 | if ( $DEBUG_sys ) ; then |
---|
| 1518 | echo "IGCM_sys_GetDate_FichArchive :" $@ |
---|
| 1519 | fi |
---|
| 1520 | typeset dateF |
---|
| 1521 | set +A dateF -- $( ls -l --full-time --time-style='+%Y%m%d%H%M%S' ${1} ) |
---|
| 1522 | eval ${2}=${dateF[5]} |
---|
| 1523 | |
---|
| 1524 | IGCM_debug_PopStack "IGCM_sys_FichArchive" |
---|
| 1525 | } |
---|
| 1526 | |
---|
| 1527 | #D-#================================================== |
---|
| 1528 | #D-function IGCM_sys_Dods_Rm |
---|
| 1529 | #D-* Purpose: DO NOTHING ! Put ${ARCHIVE} files on DODS internet protocole. |
---|
| 1530 | #D-* Examples: |
---|
| 1531 | #D- |
---|
| 1532 | function IGCM_sys_Dods_Rm { |
---|
| 1533 | if ( $DEBUG_sys ) ; then |
---|
| 1534 | echo "IGCM_sys_Dods_Rm :" $@ |
---|
| 1535 | fi |
---|
| 1536 | typeset RET |
---|
| 1537 | RET=0 |
---|
| 1538 | if [ $DRYRUN = 0 ]; then |
---|
| 1539 | |
---|
| 1540 | # if [ ! -d /dmnfs/cont003/dods/public/${LOGIN}/${R_DODS}/${1} ] ; then |
---|
| 1541 | # echo "WARNING : IGCM_sys_Dods_Rm /dmnfs/cont003/dods/public/${LOGIN}/${R_DODS}/${1} DOES NOT EXIST ." |
---|
| 1542 | # echo "Nothing has been done." |
---|
| 1543 | # return |
---|
| 1544 | # fi |
---|
| 1545 | |
---|
[649] | 1546 | /ccc/cont003/home/dsm/p86ipsl/bin/dods_rm public/${LOGIN}/${R_DODS}/${1} # > out_dods_rm 2>&1 |
---|
[623] | 1547 | RET=$? |
---|
| 1548 | |
---|
| 1549 | # if [ ${RET} -gt 0 ] ; then |
---|
| 1550 | # echo "IGCM_sys_Dods_Rm : error." |
---|
| 1551 | # cat out_dods_rm |
---|
| 1552 | # IGCM_debug_Exit "IGCM_sys_Dods_Rm" |
---|
| 1553 | # else |
---|
| 1554 | # rm out_dods_rm |
---|
| 1555 | # fi |
---|
| 1556 | |
---|
| 1557 | else |
---|
| 1558 | ( ${DEBUG_debug} ) && echo "DRYRUN mode = " $DRYRUN >> stack |
---|
| 1559 | fi |
---|
| 1560 | return $RET |
---|
| 1561 | } |
---|
| 1562 | |
---|
| 1563 | #D-#================================================== |
---|
| 1564 | #D-function IGCM_sys_Dods_Cp |
---|
| 1565 | #D-* Purpose: Copy $(ARCHIVE) files on DODS internet protocole. |
---|
| 1566 | #D-* Examples: |
---|
| 1567 | #D- |
---|
| 1568 | function IGCM_sys_Dods_Cp { |
---|
| 1569 | if ( $DEBUG_sys ) ; then |
---|
| 1570 | echo "IGCM_sys_Dods_Cp :" $@ |
---|
| 1571 | fi |
---|
| 1572 | typeset RET |
---|
| 1573 | RET=0 |
---|
| 1574 | if [ $DRYRUN = 0 ]; then |
---|
| 1575 | |
---|
| 1576 | # if [ ! -d ${R_SAVE}/${1} ] ; then |
---|
| 1577 | # echo "WARNING : IGCM_sys_Dods_Cp ${R_SAVE}/${1} DOES NOT EXIST ." |
---|
| 1578 | # echo "Nothing has been done." |
---|
| 1579 | # return |
---|
| 1580 | # fi |
---|
| 1581 | |
---|
[649] | 1582 | /ccc/cont003/home/dsm/p86ipsl/bin/dods_cp ${1} public/${LOGIN}/${R_DODS} # > out_dods_cp 2>&1 |
---|
[623] | 1583 | RET=$? |
---|
| 1584 | |
---|
| 1585 | # if [ ${RET} -gt 0 ] ; then |
---|
| 1586 | # echo "IGCM_sys_Dods_Cp : error." |
---|
| 1587 | # cat out_dods_cp |
---|
| 1588 | # IGCM_debug_Exit "IGCM_sys_Dods_Cp" |
---|
| 1589 | # else |
---|
| 1590 | # rm out_dods_cp |
---|
| 1591 | # fi |
---|
| 1592 | |
---|
| 1593 | else |
---|
| 1594 | ( ${DEBUG_debug} ) && echo "DRYRUN mode = " $DRYRUN >> stack |
---|
| 1595 | fi |
---|
| 1596 | return $RET |
---|
| 1597 | } |
---|
| 1598 | |
---|
| 1599 | #D-#================================================== |
---|
| 1600 | #D-function IGCM_sys_Put_Dods |
---|
| 1601 | #D-* Purpose: Put $(ARCHIVE) files on DODS internet protocole. |
---|
| 1602 | #D-* Examples: |
---|
| 1603 | #D- |
---|
| 1604 | function IGCM_sys_Put_Dods { |
---|
| 1605 | IGCM_debug_PushStack "IGCM_sys_Put_Dods" $@ |
---|
| 1606 | if ( $DEBUG_sys ) ; then |
---|
| 1607 | echo "IGCM_sys_Put_Dods :" $@ |
---|
| 1608 | fi |
---|
| 1609 | set -vx |
---|
| 1610 | typeset RET |
---|
| 1611 | if [ $DRYRUN = 0 ]; then |
---|
| 1612 | if ( [ ! -d ${R_SAVE}/${1} ] && [ ! -d ${R_FIGR}/${1} ] ) ; then |
---|
| 1613 | echo "WARNING IGCM_sys_Put_Dods : None of the following directories exist. Exactly one should." |
---|
| 1614 | echo "WARNING IGCM_sys_Put_Dods : ${R_SAVE}/${1} DOES NOT EXIST." |
---|
| 1615 | echo "WARNING IGCM_sys_Put_Dods : ${R_FIGR}/${1} DOES NOT EXIST." |
---|
| 1616 | IGCM_debug_PopStack "IGCM_sys_Put_Dods" |
---|
| 1617 | return |
---|
[622] | 1618 | fi |
---|
[623] | 1619 | |
---|
| 1620 | if ( [ -d ${R_SAVE}/${1} ] && [ -d ${R_FIGR}/${1} ] ) ; then |
---|
| 1621 | echo "WARNING IGCM_sys_Put_Dods : Both of the following directories exist. Exactly one should." |
---|
| 1622 | echo "WARNING IGCM_sys_Put_Dods : ${R_SAVE}/${1} EXISTS." |
---|
| 1623 | echo "WARNING IGCM_sys_Put_Dods : ${R_FIGR}/${1} EXISTS." |
---|
| 1624 | IGCM_debug_PopStack "IGCM_sys_Put_Dods" |
---|
| 1625 | return |
---|
| 1626 | fi |
---|
| 1627 | # |
---|
| 1628 | if [ -d ${R_SAVE}/${1} ] ; then |
---|
| 1629 | cd ${R_SAVE} |
---|
| 1630 | elif [ -d ${R_FIGR}/${1} ] ; then |
---|
| 1631 | cd ${R_FIGR} |
---|
| 1632 | fi |
---|
| 1633 | |
---|
| 1634 | IGCM_sys_Dods_Rm ${1} |
---|
| 1635 | IGCM_sys_Dods_Cp ${1} |
---|
| 1636 | RET=0 |
---|
| 1637 | |
---|
| 1638 | if [ ${RET} -gt 0 ] ; then |
---|
| 1639 | echo "IGCM_sys_Put_Dods : error." |
---|
| 1640 | IGCM_debug_Exit "IGCM_sys_Put_Dods" |
---|
| 1641 | fi |
---|
| 1642 | else |
---|
| 1643 | ( ${DEBUG_debug} ) && echo "DRYRUN mode = " $DRYRUN >> stack |
---|
| 1644 | fi |
---|
| 1645 | IGCM_debug_PopStack "IGCM_sys_Put_Dods" |
---|
[622] | 1646 | } |
---|
| 1647 | |
---|
| 1648 | ############################################################## |
---|
| 1649 | # REBUILD OPERATOR |
---|
| 1650 | |
---|
| 1651 | function IGCM_sys_rebuild { |
---|
[623] | 1652 | IGCM_debug_PushStack "IGCM_sys_rebuild" -- $@ |
---|
| 1653 | if ( $DEBUG_sys ) ; then |
---|
| 1654 | echo "IGCM_sys_rebuild :" $@ |
---|
| 1655 | fi |
---|
| 1656 | ~p86ipsl/CESIUM/bin/rebuild -f -o $@ |
---|
| 1657 | if [ $? -gt 0 ] ; then |
---|
| 1658 | echo "IGCM_sys_rebuild : erreur ${@}." |
---|
| 1659 | IGCM_debug_Exit "rebuild" |
---|
| 1660 | fi |
---|
[622] | 1661 | |
---|
[623] | 1662 | IGCM_debug_PopStack "IGCM_sys_rebuild" |
---|
[622] | 1663 | } |
---|
| 1664 | |
---|
| 1665 | ############################################################ |
---|
| 1666 | # Activate Running Environnment Variables |
---|
| 1667 | |
---|
| 1668 | function IGCM_sys_activ_variables { |
---|
[623] | 1669 | IGCM_debug_PushStack "IGCM_sys_activ_variables" |
---|
| 1670 | if ( $DEBUG_sys ) ; then |
---|
| 1671 | echo "IGCM_sys_activ_variables" |
---|
| 1672 | fi |
---|
[622] | 1673 | |
---|
[623] | 1674 | ulimit -s unlimited |
---|
[622] | 1675 | |
---|
[623] | 1676 | IGCM_debug_PopStack "IGCM_sys_activ_variables" |
---|
[622] | 1677 | } |
---|
| 1678 | |
---|
| 1679 | ############################################################ |
---|
| 1680 | # Desactivate Running Environnment Variables |
---|
| 1681 | |
---|
| 1682 | function IGCM_sys_desactiv_variables { |
---|
[623] | 1683 | IGCM_debug_PushStack "IGCM_sys_desactiv_variables" |
---|
| 1684 | if ( $DEBUG_sys ) ; then |
---|
| 1685 | echo "IGCM_sys_desactiv_variables" |
---|
| 1686 | fi |
---|
| 1687 | IGCM_debug_PopStack "IGCM_sys_desactiv_variables" |
---|
[622] | 1688 | } |
---|
| 1689 | |
---|
[623] | 1690 | ############################################################ |
---|
| 1691 | # Build MPI/OMP scripts run file (dummy function) |
---|
[622] | 1692 | |
---|
| 1693 | function IGCM_sys_build_run_file { |
---|
| 1694 | |
---|
[623] | 1695 | IGCM_debug_Print 3 " dummy function : IGCM_sys_build_run_file " |
---|
[622] | 1696 | |
---|
| 1697 | } |
---|
| 1698 | |
---|
| 1699 | ############################################################ |
---|
| 1700 | # Build MPI/OMP scripts |
---|
[623] | 1701 | function IGCM_sys_build_execution_scripts |
---|
[622] | 1702 | { |
---|
[623] | 1703 | IGCM_debug_PushStack "IGCM_sys_build_execution_scripts" $@ |
---|
| 1704 | if ( $DEBUG_sys ) ; then |
---|
| 1705 | echo "IGCM_sys_build_execution_scripts " $@ |
---|
| 1706 | fi |
---|
[622] | 1707 | |
---|
| 1708 | # Verification with MSUB parameter |
---|
[623] | 1709 | EXECUTION=${HOST_MPIRUN_COMMAND} |
---|
[622] | 1710 | |
---|
[623] | 1711 | if ( ${OK_PARA_MPMD} ) ; then |
---|
[622] | 1712 | |
---|
[623] | 1713 | if [ -f run_file ] ; then |
---|
| 1714 | IGCM_sys_Rm -f run_file |
---|
| 1715 | fi |
---|
| 1716 | touch run_file |
---|
[622] | 1717 | |
---|
| 1718 | # run_file construction |
---|
| 1719 | |
---|
| 1720 | # Then first loop on the components for the coupler ie oasis |
---|
| 1721 | |
---|
| 1722 | ### the coupler ie oasis must be the first one |
---|
| 1723 | for comp in ${config_ListOfComponents[*]} ; do |
---|
| 1724 | |
---|
[623] | 1725 | eval ExeNameIn=\${config_Executable_${comp}[0]} |
---|
| 1726 | eval ExeNameOut=\${config_Executable_${comp}[1]} |
---|
[622] | 1727 | |
---|
| 1728 | # for CPL component only |
---|
[623] | 1729 | if [ "X${comp}" = "XCPL" ] ; then |
---|
[622] | 1730 | |
---|
[623] | 1731 | eval comp_proc_mpi_loc=\${${comp}_PROC_MPI} |
---|
| 1732 | eval comp_proc_omp_loc=\${${comp}_PROC_OMP} |
---|
| 1733 | echo "${comp_proc_mpi_loc} ./${ExeNameOut}" >> run_file |
---|
| 1734 | fi |
---|
[622] | 1735 | done |
---|
| 1736 | |
---|
| 1737 | # Then second loop on the components |
---|
| 1738 | |
---|
| 1739 | for comp in ${config_ListOfComponents[*]} ; do |
---|
| 1740 | |
---|
[623] | 1741 | eval ExeNameIn=\${config_Executable_${comp}[0]} |
---|
| 1742 | eval ExeNameOut=\${config_Executable_${comp}[1]} |
---|
[622] | 1743 | |
---|
| 1744 | # Only if we really have an executable for the component and not the coupler ie oasis: |
---|
[623] | 1745 | if ( [ "X${ExeNameOut}" != X\"\" ] && [ "X${comp}" != "XCPL" ] ) ; then |
---|
[622] | 1746 | |
---|
[623] | 1747 | eval comp_proc_mpi_loc=\${${comp}_PROC_MPI} |
---|
| 1748 | eval comp_proc_omp_loc=\${${comp}_PROC_OMP} |
---|
| 1749 | echo "${comp_proc_mpi_loc} ./${ExeNameOut}" >> run_file |
---|
| 1750 | fi |
---|
[622] | 1751 | done |
---|
| 1752 | |
---|
| 1753 | EXECUTION="${HOST_MPIRUN_COMMAND} -f ./run_file" |
---|
| 1754 | |
---|
| 1755 | IGCM_sys_Chmod u+x run_file |
---|
| 1756 | if ( $DEBUG_sys ) ; then |
---|
| 1757 | echo "run_file contains : " |
---|
| 1758 | cat run_file |
---|
| 1759 | fi |
---|
| 1760 | |
---|
[623] | 1761 | else # Only one executable. launch it. |
---|
[622] | 1762 | |
---|
[623] | 1763 | # |
---|
[622] | 1764 | for comp in ${config_ListOfComponents[*]} ; do |
---|
| 1765 | |
---|
[623] | 1766 | eval ExeNameIn=\${config_Executable_${comp}[0]} |
---|
| 1767 | eval ExeNameOut=\${config_Executable_${comp}[1]} |
---|
[622] | 1768 | |
---|
[664] | 1769 | if ( [ "X${ExeNameOut}" != X\"\" ] && [ "X${ExeNameOut}" != "Xinca.dat" ] ) ; then |
---|
[623] | 1770 | if ( ${OK_PARA_MPI} ) ; then |
---|
| 1771 | eval comp_proc_mpi_loc=\${${comp}_PROC_MPI} |
---|
| 1772 | EXECUTION="${EXECUTION} -n ${comp_proc_mpi_loc} ./${ExeNameOut}" |
---|
| 1773 | else |
---|
| 1774 | EXECUTION="${EXECUTION} ./${ExeNameOut}" |
---|
[622] | 1775 | fi |
---|
[623] | 1776 | if ( ${OK_PARA_OMP} ) ; then |
---|
| 1777 | eval comp_proc_omp_loc=\${${comp}_PROC_OMP} |
---|
| 1778 | EXECUTION="export OMP_NUM_THREADS=${comp_proc_omp_loc} ; ${EXECUTION} " |
---|
| 1779 | fi |
---|
| 1780 | fi |
---|
[622] | 1781 | |
---|
| 1782 | done |
---|
| 1783 | |
---|
[623] | 1784 | fi |
---|
[622] | 1785 | |
---|
[623] | 1786 | IGCM_debug_Print 1 "sys Curie : execution command is " |
---|
| 1787 | IGCM_debug_Print 1 "$EXECUTION" |
---|
[622] | 1788 | |
---|
[623] | 1789 | IGCM_debug_PopStack "IGCM_sys_build_execution_scripts" |
---|
[622] | 1790 | } |
---|
| 1791 | |
---|
| 1792 | ############################################################## |
---|
| 1793 | # NCO OPERATOR |
---|
| 1794 | |
---|
[623] | 1795 | function IGCM_sys_ncap2 { |
---|
| 1796 | IGCM_debug_PushStack "IGCM_sys_ncap2" -- $@ |
---|
| 1797 | if ( $DEBUG_sys ) ; then |
---|
| 1798 | echo "IGCM_sys_ncap2 :" $@ |
---|
| 1799 | fi |
---|
| 1800 | ncap2 "$@" |
---|
| 1801 | if [ $? -gt 0 ] ; then |
---|
| 1802 | echo "IGCM_sys_ncap2 : erreur ${@}." |
---|
| 1803 | IGCM_debug_Exit "ncap2" |
---|
| 1804 | fi |
---|
| 1805 | |
---|
| 1806 | IGCM_debug_PopStack "IGCM_sys_ncap2" |
---|
| 1807 | } |
---|
| 1808 | |
---|
[622] | 1809 | function IGCM_sys_ncatted { |
---|
[623] | 1810 | IGCM_debug_PushStack "IGCM_sys_ncatted" -- $@ |
---|
| 1811 | if ( $DEBUG_sys ) ; then |
---|
| 1812 | echo "IGCM_sys_ncatted :" $@ |
---|
| 1813 | fi |
---|
| 1814 | ncatted "$@" |
---|
| 1815 | if [ $? -gt 0 ] ; then |
---|
| 1816 | echo "IGCM_sys_ncatted : erreur ${@}." |
---|
| 1817 | IGCM_debug_Exit "ncatted" |
---|
| 1818 | fi |
---|
[622] | 1819 | |
---|
[623] | 1820 | IGCM_debug_PopStack "IGCM_sys_ncatted" |
---|
[622] | 1821 | } |
---|
| 1822 | |
---|
| 1823 | function IGCM_sys_ncbo { |
---|
[623] | 1824 | IGCM_debug_PushStack "IGCM_sys_ncbo" -- $@ |
---|
| 1825 | if ( $DEBUG_sys ) ; then |
---|
| 1826 | echo "IGCM_sys_ncbo :" $@ |
---|
| 1827 | fi |
---|
| 1828 | ncbo $@ |
---|
| 1829 | if [ $? -gt 0 ] ; then |
---|
| 1830 | echo "IGCM_sys_ncbo : erreur ${@}." |
---|
| 1831 | IGCM_debug_Exit "ncbo" |
---|
| 1832 | fi |
---|
[622] | 1833 | |
---|
[623] | 1834 | IGCM_debug_PopStack "IGCM_sys_ncbo" |
---|
[622] | 1835 | } |
---|
| 1836 | |
---|
| 1837 | function IGCM_sys_ncdiff { |
---|
[623] | 1838 | IGCM_debug_PushStack "IGCM_sys_ncdiff" -- $@ |
---|
| 1839 | if ( $DEBUG_sys ) ; then |
---|
| 1840 | echo "IGCM_sys_ncdiff :" $@ |
---|
| 1841 | fi |
---|
| 1842 | ncdiff $@ |
---|
| 1843 | if [ $? -gt 0 ] ; then |
---|
| 1844 | echo "IGCM_sys_ncdiff : erreur ${@}." |
---|
| 1845 | IGCM_debug_Exit "ncdiff" |
---|
| 1846 | fi |
---|
[622] | 1847 | |
---|
[623] | 1848 | IGCM_debug_PopStack "IGCM_sys_ncdiff" |
---|
[622] | 1849 | } |
---|
| 1850 | |
---|
| 1851 | function IGCM_sys_ncea { |
---|
[623] | 1852 | IGCM_debug_PushStack "IGCM_sys_ncea" -- $@ |
---|
| 1853 | if ( $DEBUG_sys ) ; then |
---|
| 1854 | echo "IGCM_sys_ncea :" $@ |
---|
| 1855 | fi |
---|
| 1856 | ncea $@ |
---|
| 1857 | if [ $? -gt 0 ] ; then |
---|
| 1858 | echo "IGCM_sys_ncea : erreur ${@}." |
---|
| 1859 | IGCM_debug_Exit "ncea" |
---|
| 1860 | fi |
---|
[622] | 1861 | |
---|
[623] | 1862 | IGCM_debug_PopStack "IGCM_sys_ncea" |
---|
[622] | 1863 | } |
---|
| 1864 | |
---|
| 1865 | function IGCM_sys_ncecat { |
---|
[623] | 1866 | IGCM_debug_PushStack "IGCM_sys_ncecat" -- $@ |
---|
| 1867 | if ( $DEBUG_sys ) ; then |
---|
| 1868 | echo "IGCM_sys_ncecat :" $@ |
---|
| 1869 | fi |
---|
| 1870 | ncecat $@ |
---|
| 1871 | if [ $? -gt 0 ] ; then |
---|
| 1872 | echo "IGCM_sys_ncecat : erreur ${@}." |
---|
| 1873 | IGCM_debug_Exit "ncecat" |
---|
| 1874 | fi |
---|
[622] | 1875 | |
---|
[623] | 1876 | IGCM_debug_PopStack "IGCM_sys_ncecat" |
---|
[622] | 1877 | } |
---|
| 1878 | |
---|
| 1879 | function IGCM_sys_ncflint { |
---|
[623] | 1880 | IGCM_debug_PushStack "IGCM_sys_ncflint" -- $@ |
---|
| 1881 | if ( $DEBUG_sys ) ; then |
---|
| 1882 | echo "IGCM_sys_ncflint :" $@ |
---|
| 1883 | fi |
---|
| 1884 | ncflint $@ |
---|
| 1885 | if [ $? -gt 0 ] ; then |
---|
| 1886 | echo "IGCM_sys_ncflint : erreur ${@}." |
---|
| 1887 | IGCM_debug_Exit "ncflint" |
---|
| 1888 | fi |
---|
[622] | 1889 | |
---|
[623] | 1890 | IGCM_debug_PopStack "IGCM_sys_ncflint" |
---|
[622] | 1891 | } |
---|
| 1892 | |
---|
| 1893 | function IGCM_sys_ncks { |
---|
[623] | 1894 | IGCM_debug_PushStack "IGCM_sys_ncks" -- $@ |
---|
| 1895 | if ( $DEBUG_sys ) ; then |
---|
| 1896 | echo "IGCM_sys_ncks :" $@ |
---|
| 1897 | fi |
---|
| 1898 | ncks $@ |
---|
| 1899 | if [ $? -gt 0 ] ; then |
---|
| 1900 | echo "IGCM_sys_ncks : erreur ${@}." |
---|
| 1901 | IGCM_debug_Exit "ncks" |
---|
| 1902 | fi |
---|
[622] | 1903 | |
---|
[623] | 1904 | IGCM_debug_PopStack "IGCM_sys_ncks" |
---|
[622] | 1905 | } |
---|
| 1906 | |
---|
| 1907 | function IGCM_sys_ncpdq { |
---|
[623] | 1908 | IGCM_debug_PushStack "IGCM_sys_ncpdq" -- $@ |
---|
| 1909 | if ( $DEBUG_sys ) ; then |
---|
| 1910 | echo "IGCM_sys_ncpdq :" $@ |
---|
| 1911 | fi |
---|
| 1912 | ncpdq $@ |
---|
| 1913 | if [ $? -gt 0 ] ; then |
---|
| 1914 | echo "IGCM_sys_ncpdq : erreur ${@}." |
---|
| 1915 | IGCM_debug_Exit "ncpdq" |
---|
| 1916 | fi |
---|
[622] | 1917 | |
---|
[623] | 1918 | IGCM_debug_PopStack "IGCM_sys_ncpdq" |
---|
[622] | 1919 | } |
---|
| 1920 | |
---|
| 1921 | function IGCM_sys_ncra { |
---|
[623] | 1922 | IGCM_debug_PushStack "IGCM_sys_ncra" -- $@ |
---|
| 1923 | if ( $DEBUG_sys ) ; then |
---|
| 1924 | echo "IGCM_sys_ncra :" $@ |
---|
| 1925 | fi |
---|
| 1926 | ncra $@ |
---|
| 1927 | if [ $? -gt 0 ] ; then |
---|
| 1928 | echo "IGCM_sys_ncra : erreur ${@}." |
---|
| 1929 | IGCM_debug_Exit "ncra" |
---|
| 1930 | fi |
---|
[622] | 1931 | |
---|
[623] | 1932 | IGCM_debug_PopStack "IGCM_sys_ncra" |
---|
[622] | 1933 | } |
---|
| 1934 | |
---|
| 1935 | function IGCM_sys_ncrcat { |
---|
[623] | 1936 | IGCM_debug_PushStack "IGCM_sys_ncrcat" -- $@ |
---|
| 1937 | if ( $DEBUG_sys ) ; then |
---|
| 1938 | echo "IGCM_sys_ncrcat :" $@ |
---|
| 1939 | fi |
---|
| 1940 | ncrcat $@ |
---|
| 1941 | if [ $? -gt 0 ] ; then |
---|
| 1942 | echo "IGCM_sys_ncrcat : erreur ${@}." |
---|
[622] | 1943 | # IGCM_debug_Exit "ncrcat" |
---|
[623] | 1944 | fi |
---|
[622] | 1945 | |
---|
[623] | 1946 | IGCM_debug_PopStack "IGCM_sys_ncrcat" |
---|
[622] | 1947 | } |
---|
| 1948 | |
---|
| 1949 | function IGCM_sys_ncrename { |
---|
[623] | 1950 | IGCM_debug_PushStack "IGCM_sys_ncrename" -- $@ |
---|
| 1951 | if ( $DEBUG_sys ) ; then |
---|
| 1952 | echo "IGCM_sys_ncrename :" $@ |
---|
| 1953 | fi |
---|
| 1954 | ncrename $@ |
---|
| 1955 | if [ $? -gt 0 ] ; then |
---|
| 1956 | echo "IGCM_sys_ncrename : erreur ${@}." |
---|
| 1957 | IGCM_debug_Exit "ncrename" |
---|
| 1958 | fi |
---|
[622] | 1959 | |
---|
[623] | 1960 | IGCM_debug_PopStack "IGCM_sys_ncrename" |
---|
[622] | 1961 | } |
---|
| 1962 | |
---|
| 1963 | function IGCM_sys_ncwa { |
---|
[623] | 1964 | IGCM_debug_PushStack "IGCM_sys_ncwa" -- $@ |
---|
| 1965 | if ( $DEBUG_sys ) ; then |
---|
| 1966 | echo "IGCM_sys_ncwa :" $@ |
---|
| 1967 | fi |
---|
| 1968 | ncwa $@ |
---|
| 1969 | if [ $? -gt 0 ] ; then |
---|
| 1970 | echo "IGCM_sys_ncwa : erreur ${@}." |
---|
| 1971 | IGCM_debug_Exit "ncwa" |
---|
| 1972 | fi |
---|
[622] | 1973 | |
---|
[623] | 1974 | IGCM_debug_PopStack "IGCM_sys_ncwa" |
---|
[622] | 1975 | } |
---|
[623] | 1976 | |
---|
| 1977 | ############################################################## |
---|
| 1978 | # CDO OPERATOR |
---|
| 1979 | |
---|
| 1980 | function IGCM_sys_cdo { |
---|
| 1981 | IGCM_debug_PushStack "IGCM_sys_cdo" -- $@ |
---|
| 1982 | if ( $DEBUG_sys ) ; then |
---|
| 1983 | echo "IGCM_sys_cdo :" $@ |
---|
| 1984 | fi |
---|
| 1985 | \cdo $@ |
---|
| 1986 | if [ $? -gt 0 ] ; then |
---|
| 1987 | echo "IGCM_sys_cdo : erreur ${@}." |
---|
| 1988 | IGCM_debug_PopStack "IGCM_sys_cdo" |
---|
| 1989 | return 1 |
---|
| 1990 | else |
---|
| 1991 | IGCM_debug_PopStack "IGCM_sys_cdo" |
---|
| 1992 | return 0 |
---|
| 1993 | fi |
---|
| 1994 | |
---|
| 1995 | IGCM_debug_PopStack "IGCM_sys_cdo" |
---|
| 1996 | } |
---|
[651] | 1997 | |
---|
| 1998 | ############################################################ |
---|
| 1999 | # Check of space available on temporary filesytems |
---|
| 2000 | function IGCM_sys_check_quota { |
---|
| 2001 | IGCM_debug_PushStack "IGCM_sys_check_quota" |
---|
| 2002 | if ( $DEBUG_sys ) ; then |
---|
| 2003 | echo "IGCM_sys_check_quota" |
---|
| 2004 | fi |
---|
| 2005 | IGCM_debug_PopStack "IGCM_sys_check_quota" |
---|
| 2006 | } |
---|