[622] | 1 | #!/bin/ksh |
---|
| 2 | |
---|
| 3 | #************************************************************** |
---|
| 4 | # Author: Sebastien Denvil, Martial Mancip, Arnaud Caubel |
---|
| 5 | # Contact: Arnaud.Caubel__at__lsce.ipsl.fr |
---|
| 6 | # $Revision:: $ Revision of last commit |
---|
| 7 | # $Author:: $ Author of last commit |
---|
| 8 | # $Date:: $ Date of last commit |
---|
| 9 | # IPSL (2006) |
---|
| 10 | # This software is governed by the CeCILL licence see libIGCM/libIGCM_CeCILL.LIC |
---|
| 11 | # |
---|
| 12 | #************************************************************** |
---|
| 13 | |
---|
| 14 | #========================================================= |
---|
| 15 | # The documentation of this file can be automatically generated |
---|
[623] | 16 | # if you use the prefix #D- for comments to be extracted. |
---|
[622] | 17 | # Extract with command: cat lib* | grep "^#D-" | cut -c "4-" |
---|
| 18 | #========================================================= |
---|
| 19 | |
---|
| 20 | #D-#================================================== |
---|
[623] | 21 | #D-LibIGCM_sys for Curie |
---|
[622] | 22 | #D-#================================================== |
---|
| 23 | #D- |
---|
[623] | 24 | #D- This ksh library if a layer under some usefull |
---|
[622] | 25 | #D-environment variables and shell commands. |
---|
| 26 | #D-All those definitions depend on host particularities. |
---|
| 27 | #D-It manages a stack mechanism and test validity of operations. |
---|
| 28 | #D-All function described bellow must be prefixed by IGCM_sys. |
---|
| 29 | |
---|
| 30 | #==================================================== |
---|
| 31 | # libIGCM_sys PARAMETERS |
---|
| 32 | #==================================================== |
---|
| 33 | |
---|
| 34 | #==================================================== |
---|
| 35 | # set DEBUG_sys to true to output calls of function |
---|
| 36 | typeset -r DEBUG_sys=${DEBUG_sys:=true} |
---|
| 37 | |
---|
| 38 | #==================================================== |
---|
| 39 | # Turn in dry run mode ? (sys_Put_Rest, sys_Put_Out, sys_Get) |
---|
| 40 | typeset -r DRYRUN=${DRYRUN:=0} |
---|
| 41 | |
---|
| 42 | # YOU MUST COMPILE YOUR EXE FILES FOR DRYRUN MODE ! |
---|
| 43 | # ------------------------------------------------------------------------------------- |
---|
| 44 | # | DRYRUN= | Date computations, | sys_Get | Exe | sys_Put_Out; sys_Put_Rest | |
---|
| 45 | # | | Cp/Exe param files | | Chmod | | |
---|
| 46 | # | | Qsub | | | | |
---|
| 47 | # ------------------------------------------------------------------------------------- |
---|
| 48 | # | 0 | yes | yes | yes | yes | |
---|
| 49 | # ------------------------------------------------------------------------------------- |
---|
| 50 | # | 1 | yes | yes | yes | no | |
---|
| 51 | # ------------------------------------------------------------------------------------- |
---|
| 52 | # | 2 | yes | yes | no | no | |
---|
| 53 | # ------------------------------------------------------------------------------------- |
---|
| 54 | # | 3 | yes | no | no | no | |
---|
| 55 | # ------------------------------------------------------------------------------------- |
---|
| 56 | |
---|
| 57 | #===================================================== |
---|
| 58 | # Global Variables : |
---|
| 59 | #===================================================== |
---|
| 60 | # Language : "fr" or "en" |
---|
| 61 | typeset -r MYLANG="fr" |
---|
| 62 | |
---|
| 63 | #===================================================== |
---|
| 64 | # Host and user names |
---|
| 65 | # $hostname ou hostname |
---|
| 66 | typeset HOST=${HOST:=$( hostname )} |
---|
| 67 | # $username ou whoami |
---|
| 68 | typeset LOGIN=${LOGIN:=$( whoami )} |
---|
| 69 | # $hostname of the MASTER job |
---|
| 70 | typeset MASTER=curie |
---|
| 71 | |
---|
| 72 | #D- |
---|
| 73 | #D-#================================================== |
---|
| 74 | #D-Program used in libIGCM |
---|
| 75 | #D-#================================================== |
---|
| 76 | |
---|
[742] | 77 | # Submit command |
---|
[747] | 78 | typeset SUBMIT=${SUBMIT:=ccc_msub} |
---|
[622] | 79 | # rsync with path |
---|
| 80 | typeset -r RSYNC=/usr/bin/rsync |
---|
| 81 | # RSYNC_opt args to rsync |
---|
| 82 | typeset -r RSYNC_opt="-va" |
---|
| 83 | # ie storage filesystem |
---|
[623] | 84 | typeset -r STOREHOST=${MASTER} |
---|
[622] | 85 | |
---|
| 86 | #==================================================== |
---|
| 87 | # Source default environment |
---|
| 88 | #==================================================== |
---|
| 89 | ##. /etc/profile |
---|
| 90 | |
---|
| 91 | #==================================================== |
---|
| 92 | # Set environment tools (ferret, nco, cdo) |
---|
| 93 | #==================================================== |
---|
[712] | 94 | if [ X${TaskType} = Xcomputing ] ; then |
---|
| 95 | . /ccc/cont003/home/dsm/p86ipsl/.atlas_env_calcul_curie_ksh |
---|
[739] | 96 | export PATH=${PATH}:/ccc/cont003/home/dsm/p86ipsl/AddNoise/src_X64/bin |
---|
[712] | 97 | else |
---|
| 98 | . /ccc/cont003/home/dsm/p86ipsl/.atlas_env_post_curie_ksh |
---|
| 99 | fi |
---|
[622] | 100 | |
---|
| 101 | #==================================================== |
---|
| 102 | # Specific for ocean additionnal diagnostic |
---|
| 103 | export FER_GO="$FER_GO /home/cont003/p86denv/IGCM_POST_UTIL/JNL /home/cont003/p86denv/GRAF /home/cont003/p86denv/GRAF/GO" |
---|
| 104 | export FER_PALETTE="$FER_PALETTE /home/cont003/p86denv/GRAF/PALET" |
---|
| 105 | |
---|
| 106 | #==================================================== |
---|
| 107 | # Host specific DIRECTORIES |
---|
| 108 | #==================================================== |
---|
| 109 | |
---|
[623] | 110 | # ============ CESIUM START ============ # |
---|
| 111 | |
---|
[622] | 112 | #==================================================== |
---|
[623] | 113 | #- Mirror libIGCM from titane to cesium if needed |
---|
| 114 | #ROOTSYS=$( echo ${libIGCM} | gawk -F"/" '{print $3}' ) |
---|
| 115 | #if [ ! ${ROOTSYS} = "home" ] ; then |
---|
| 116 | # typeset -r MirrorlibIGCM=${MirrorlibIGCM:=true} |
---|
| 117 | #else |
---|
| 118 | # typeset -r MirrorlibIGCM=${MirrorlibIGCM:=false} |
---|
| 119 | #fi |
---|
| 120 | |
---|
| 121 | #==================================================== |
---|
| 122 | #- libIGCM_POST |
---|
| 123 | #if ( ${MirrorlibIGCM} ) ; then |
---|
| 124 | # PATHlibIGCM=$( echo ${libIGCM} | gawk -F"${LOGIN}/" '{print $2}' | sed -e "s&/libIGCM&&" ) |
---|
| 125 | # typeset -r libIGCM_POST=${HOME}/MIRROR/${PATHlibIGCM}/libIGCM |
---|
| 126 | #else |
---|
| 127 | # typeset -r libIGCM_POST=${libIGCM} |
---|
| 128 | #fi |
---|
| 129 | |
---|
| 130 | # ============ CESIUM END ============ # |
---|
| 131 | |
---|
| 132 | #==================================================== |
---|
| 133 | #- MirrorlibIGCM for frontend |
---|
| 134 | typeset -r MirrorlibIGCM=${MirrorlibIGCM:=false} |
---|
| 135 | |
---|
| 136 | #==================================================== |
---|
| 137 | #- libIGCM_POST for frontend |
---|
| 138 | typeset -r libIGCM_POST=${libIGCM} |
---|
| 139 | |
---|
| 140 | #==================================================== |
---|
[622] | 141 | #- R_EXE (==> BIN_DIR = ${MODIPSL}/bin ) |
---|
| 142 | typeset -r R_EXE="${MODIPSL}/bin" |
---|
| 143 | |
---|
| 144 | #==================================================== |
---|
| 145 | #- SUBMIT_DIR : submission dir |
---|
| 146 | typeset SUBMIT_DIR=${SUBMIT_DIR:=${BRIDGE_MSUB_PWD}} |
---|
| 147 | |
---|
| 148 | #==================================================== |
---|
| 149 | #- IN |
---|
| 150 | typeset -r R_IN=${R_IN:=/ccc/work/cont003/dsm/p86ipsl/IGCM} |
---|
| 151 | typeset -r R_IN_ECMWF=${R_IN_ECMWF:=/ccc/work/cont003/dsm/p24data} |
---|
| 152 | |
---|
| 153 | #==================================================== |
---|
[725] | 154 | #- ARCHIVE (dedicated to large files) |
---|
| 155 | typeset ARCHIVE=${CCCSTOREDIR} |
---|
| 156 | |
---|
| 157 | #==================================================== |
---|
| 158 | #- STORAGE (dedicated to small/medium files) |
---|
| 159 | typeset STORAGE=${CCCWORKDIR} |
---|
| 160 | |
---|
| 161 | #==================================================== |
---|
[623] | 162 | #- R_OUT |
---|
[725] | 163 | typeset R_OUT=${ARCHIVE}/IGCM_OUT |
---|
[622] | 164 | |
---|
| 165 | #==================================================== |
---|
[623] | 166 | #- R_FIG (hosting figures : monitoring and atlas, and/or small files) |
---|
[725] | 167 | typeset R_FIG=${STORAGE}/IGCM_OUT |
---|
[622] | 168 | |
---|
| 169 | #==================================================== |
---|
[623] | 170 | #- R_BUF (ONLY FOR double copy an scratch) |
---|
| 171 | typeset -r R_BUF=${SCRATCHDIR}/IGCM_OUT |
---|
| 172 | |
---|
| 173 | #==================================================== |
---|
| 174 | #- BIG_DIR : BIG_DIR to store files waiting for rebuild |
---|
| 175 | typeset -r BIG_DIR=${BIG_DIR:=${SCRATCHDIR}/REBUILD} |
---|
| 176 | |
---|
| 177 | #==================================================== |
---|
[622] | 178 | #- RUN_DIR_PATH : Temporary working directory (=> TMP) |
---|
[712] | 179 | if [ X${TaskType} = Xcomputing ] ; then |
---|
[623] | 180 | typeset -r RUN_DIR_PATH=${RUN_DIR_PATH:=${SCRATCHDIR}/RUN_DIR/${BRIDGE_MSUB_JOBID}} |
---|
[622] | 181 | else |
---|
[623] | 182 | typeset -r RUN_DIR_PATH=${RUN_DIR_PATH:=${SCRATCHDIR}/TMPDIR_IGCM/${BRIDGE_MSUB_JOBID}} |
---|
[622] | 183 | fi |
---|
| 184 | |
---|
| 185 | #==================================================== |
---|
| 186 | #- HOST_MPIRUN_COMMAND |
---|
[685] | 187 | typeset -r HOST_MPIRUN_COMMAND=${HOST_MPIRUN_COMMAND:="/usr/bin/time ccc_mprun"} |
---|
[622] | 188 | |
---|
| 189 | #==================================================== |
---|
| 190 | #- Max number of arguments passed to nco operator or demigration command |
---|
| 191 | UNIX_MAX_LIMIT=360 |
---|
| 192 | |
---|
[623] | 193 | #==================================================== |
---|
| 194 | #- set PackDefault true on curie |
---|
| 195 | PackDefault=true |
---|
| 196 | |
---|
[664] | 197 | #==================================================== |
---|
| 198 | #- Number of core per node (max number of OpenMP task) |
---|
[622] | 199 | NUM_COREPERNODE=8 |
---|
| 200 | |
---|
[623] | 201 | #==================================================== |
---|
| 202 | #- Default number of MPI task for IPSL coupled model |
---|
| 203 | #- required for backward compatibility |
---|
| 204 | #- |
---|
| 205 | DEFAULT_NUM_PROC_OCE=5 |
---|
| 206 | DEFAULT_NUM_PROC_CPL=1 |
---|
[637] | 207 | (( DEFAULT_NUM_PROC_ATM = BATCH_NUM_PROC_TOT - DEFAULT_NUM_PROC_OCE - DEFAULT_NUM_PROC_CPL )) |
---|
| 208 | DEFAULT_NUM_PROC_TOTAL=${BATCH_NUM_PROC_TOT} |
---|
[623] | 209 | |
---|
[725] | 210 | #D-#================================================== |
---|
| 211 | #D-function IGCM_sys_ChangeArchive |
---|
| 212 | #D-* Purpose: if SpaceName=TEST everything is stored on SCRATCHDIR |
---|
| 213 | #D-* Examples: |
---|
| 214 | #D- |
---|
| 215 | function IGCM_sys_ChangeArchive { |
---|
| 216 | IGCM_debug_PushStack "IGCM_sys_ChangeArchive" |
---|
[676] | 217 | |
---|
[743] | 218 | R_OUT=${SCRATCHDIR}/IGCM_OUT |
---|
| 219 | R_FIG=${SCRATCHDIR}/IGCM_OUT |
---|
[725] | 220 | |
---|
| 221 | IGCM_debug_Print 1 "R_OUT has been redefined = ${R_OUT}" |
---|
| 222 | IGCM_debug_Print 1 "R_FIG has been redefined = ${R_FIG}" |
---|
| 223 | |
---|
| 224 | IGCM_debug_PopStack "IGCM_sys_ChangeArchive" |
---|
| 225 | } |
---|
| 226 | |
---|
[622] | 227 | #D-#================================================== |
---|
| 228 | #D-function IGCM_sys_RshMaster |
---|
[623] | 229 | #D-* Purpose: Connection to frontend machine. |
---|
[622] | 230 | #D-* Examples: |
---|
| 231 | #D- |
---|
| 232 | function IGCM_sys_RshMaster { |
---|
[623] | 233 | IGCM_debug_PushStack "IGCM_sys_RshMaster" $@ |
---|
| 234 | /bin/ksh <<-EOF |
---|
[622] | 235 | export libIGCM=${libIGCM} |
---|
| 236 | export DEBUG_debug=${DEBUG_debug} |
---|
| 237 | . ${libIGCM}/libIGCM_debug/libIGCM_debug.ksh |
---|
| 238 | . ${libIGCM}/libIGCM_card/libIGCM_card.ksh |
---|
| 239 | ${@} |
---|
| 240 | EOF |
---|
[623] | 241 | if [ $? -gt 0 ] ; then |
---|
| 242 | echo "IGCM_sys_RshMaster : erreur." |
---|
| 243 | IGCM_debug_Exit "IGCM_sys_RshMaster" |
---|
| 244 | fi |
---|
| 245 | IGCM_debug_PopStack "IGCM_sys_RshMaster" |
---|
[622] | 246 | } |
---|
| 247 | |
---|
| 248 | #D-#================================================== |
---|
| 249 | #D-function IGCM_sys_RshArchive |
---|
| 250 | #D-* Purpose: Archive rsh command |
---|
| 251 | #D-* Examples: |
---|
| 252 | #D- |
---|
| 253 | function IGCM_sys_RshArchive { |
---|
[623] | 254 | IGCM_debug_PushStack "IGCM_sys_RshArchive" $@ |
---|
| 255 | /bin/ksh <<-EOF |
---|
[622] | 256 | ${@} |
---|
| 257 | EOF |
---|
[623] | 258 | if [ $? -gt 0 ] ; then |
---|
| 259 | echo "IGCM_sys_RshArchive : erreur." |
---|
| 260 | IGCM_debug_Exit "IGCM_sys_RshArchive" |
---|
| 261 | fi |
---|
| 262 | IGCM_debug_PopStack "IGCM_sys_RshArchive" |
---|
[622] | 263 | } |
---|
| 264 | |
---|
| 265 | #D-#================================================== |
---|
| 266 | #D-function IGCM_sys_RshPost |
---|
| 267 | #D-* Purpose: Post-process rsh command |
---|
| 268 | #D-* Examples: |
---|
| 269 | #D- |
---|
| 270 | function IGCM_sys_RshPost { |
---|
[623] | 271 | IGCM_debug_PushStack "IGCM_sys_RshPost" $@ |
---|
| 272 | if ( $DEBUG_sys ) ; then |
---|
| 273 | echo "IGCM_sys_RshPost :" $@ |
---|
| 274 | fi |
---|
[622] | 275 | |
---|
[623] | 276 | #echo cat tmp_IGCM_sys_RshPost_$$ INITIAL |
---|
| 277 | #cat tmp_IGCM_sys_RshPost_$$ |
---|
| 278 | # keep standard input (stdin) for the loop onto temporary file |
---|
| 279 | cat >tmp_IGCM_sys_RshPost_$$ |
---|
| 280 | |
---|
| 281 | # ============ FRONTEND START ============ # |
---|
| 282 | |
---|
| 283 | /bin/ksh <tmp_IGCM_sys_RshPost_$$ |
---|
| 284 | if [ $? -gt 0 ] ; then |
---|
| 285 | echo "IGCM_sys_RshPost : erreur." |
---|
| 286 | IGCM_debug_Exit "IGCM_sys_RshPost" |
---|
| 287 | fi |
---|
| 288 | # delete temporary file |
---|
| 289 | \rm tmp_IGCM_sys_RshPost_$$ |
---|
| 290 | |
---|
| 291 | # ============ FRONTEND END ============ # |
---|
| 292 | |
---|
| 293 | # ============ CESIUM START ============ # |
---|
| 294 | # typeset NB_ESSAI DELAI status i |
---|
| 295 | # if [ "X$( grep rebuild_from tmp_IGCM_sys_RshPost_$$ )" != "X" ] ; then |
---|
| 296 | # #little hack so that rebuild submission is done on titane not an cesium |
---|
| 297 | # |
---|
| 298 | # libIGCM_POST_sed=$( echo $libIGCM_POST | sed 's/\//\\\//g' ) |
---|
| 299 | # POST_DIR_sed=$( echo ${POST_DIR} | sed 's/\//\\\//g' ) |
---|
| 300 | # sed "s/IGCM_sys_QsubPost/IGCM_sys_Qsub/g" tmp_IGCM_sys_RshPost_$$ > tmp.txt |
---|
| 301 | # sed "s/ rebuild_fromWorkdir/ ${libIGCM_POST_sed}\/rebuild_fromWorkdir.job/g" tmp.txt > tmp_IGCM_sys_RshPost_$$ |
---|
| 302 | # sed "s/ rebuild_fromArchive/ ${libIGCM_POST_sed}\/rebuild_fromArchive.job/g" tmp_IGCM_sys_RshPost_$$ > tmp.txt |
---|
| 303 | # sed "s/Script_Post_Output=/Script_Output=${POST_DIR_sed}\//g" tmp.txt > tmp_IGCM_sys_RshPost_$$ |
---|
| 304 | # \mv tmp.txt tmp_IGCM_sys_RshPost_$$ |
---|
| 305 | # |
---|
| 306 | # echo cat tmp_IGCM_sys_RshPost_$$ AFTER |
---|
| 307 | # cat tmp_IGCM_sys_RshPost_$$ |
---|
| 308 | # |
---|
| 309 | # /bin/ksh <tmp_IGCM_sys_RshPost_$$ |
---|
| 310 | # if [ $? -gt 0 ] ; then |
---|
| 311 | # echo "IGCM_sys_RshPost : erreur." |
---|
| 312 | # IGCM_debug_Exit "IGCM_sys_RshPost" |
---|
| 313 | # fi |
---|
| 314 | # # delete temporary file |
---|
| 315 | # \rm tmp_IGCM_sys_RshPost_$$ |
---|
| 316 | # |
---|
| 317 | # else |
---|
| 318 | # # number of tentative |
---|
| 319 | # NB_ESSAI=10 |
---|
| 320 | # # time delay between tentative |
---|
| 321 | # DELAI=10 |
---|
| 322 | # i=0 |
---|
| 323 | # while [ $i -ne $NB_ESSAI ] ; do |
---|
| 324 | # ssh -t titane996 ssh cesium /bin/ksh <tmp_IGCM_sys_RshPost_$$ |
---|
| 325 | # status=$? |
---|
| 326 | # if [ ${status} -ne 0 ]; |
---|
| 327 | # then |
---|
[785] | 328 | # sleep $DELAI |
---|
[623] | 329 | # else |
---|
[785] | 330 | # break |
---|
[623] | 331 | # fi |
---|
| 332 | # let i=$i+1 |
---|
| 333 | # done |
---|
| 334 | # # delete temporary file |
---|
| 335 | # \rm tmp_IGCM_sys_RshPost_$$ |
---|
| 336 | # |
---|
| 337 | # if [ ${status} -gt 0 ] ; then |
---|
| 338 | # echo "IGCM_sys_RshPost : erreur." |
---|
| 339 | # IGCM_debug_Exit "IGCM_sys_RshPost" |
---|
| 340 | # fi |
---|
| 341 | # fi |
---|
| 342 | |
---|
| 343 | # ============ CESIUM END ============ # |
---|
| 344 | |
---|
| 345 | IGCM_debug_PopStack "IGCM_sys_RshPost" |
---|
[622] | 346 | } |
---|
| 347 | |
---|
| 348 | #D-#================================================== |
---|
| 349 | #D-function IGCM_sys_SendMail |
---|
| 350 | #D-* Purpose: Send mail when simulation is over |
---|
| 351 | #D-* Examples: |
---|
| 352 | #D- |
---|
| 353 | function IGCM_sys_SendMail { |
---|
[623] | 354 | IGCM_debug_PushStack "IGCM_sys_SendMail" $@ |
---|
| 355 | if ( $DEBUG_sys ) ; then |
---|
| 356 | echo "IGCM_sys_SendMail :" $@ |
---|
| 357 | fi |
---|
[622] | 358 | |
---|
[623] | 359 | if ( ${ExitFlag} ) ; then |
---|
| 360 | status=failed |
---|
| 361 | else |
---|
| 362 | status=completed |
---|
| 363 | fi |
---|
[622] | 364 | |
---|
[623] | 365 | cat << END_MAIL > job_end.mail |
---|
[622] | 366 | Dear ${LOGIN}, |
---|
| 367 | |
---|
| 368 | Simulation ${config_UserChoices_JobName} is ${status} on supercomputer `hostname`. |
---|
| 369 | Job started : ${DateBegin} |
---|
| 370 | Job ended : ${DateEnd} |
---|
| 371 | Output files are available in ${R_SAVE} |
---|
[623] | 372 | Files to be rebuild are temporarily available in ${REBUILD_DIR} |
---|
| 373 | Pre-packed files are temporarily available in ${R_BUFR} |
---|
[622] | 374 | Script files, Script Outputs and Debug files (if necessary) are available in ${SUBMIT_DIR} |
---|
| 375 | END_MAIL |
---|
| 376 | |
---|
| 377 | if [ ! -z ${config_UserChoices_MailName} ] ; then |
---|
[623] | 378 | mail -s "${config_UserChoices_JobName} ${status}" ${config_UserChoices_MailName} < job_end.mail |
---|
[622] | 379 | elif [ -f ~/.forward ] ; then |
---|
[623] | 380 | mail -s "${config_UserChoices_JobName} ${status}" $( cat ~/.forward ) < job_end.mail |
---|
[622] | 381 | fi |
---|
[623] | 382 | sleep 10 |
---|
| 383 | rm -f job_end.mail |
---|
[622] | 384 | |
---|
[623] | 385 | if [ $? -gt 0 ] ; then |
---|
| 386 | echo "IGCM_sys_SendMail : erreur." |
---|
| 387 | IGCM_debug_Exit "IGCM_sys_SendMail" |
---|
| 388 | fi |
---|
| 389 | IGCM_debug_PopStack "IGCM_sys_SendMail" |
---|
[622] | 390 | } |
---|
| 391 | |
---|
| 392 | #D-#================================================== |
---|
| 393 | #D-function IGCM_sys_Mkdir |
---|
| 394 | #D-* Purpose: Master locale mkdir command |
---|
| 395 | #D-* Examples: |
---|
| 396 | #D- |
---|
| 397 | function IGCM_sys_Mkdir { |
---|
[623] | 398 | IGCM_debug_PushStack "IGCM_sys_Mkdir" $@ |
---|
| 399 | if ( $DEBUG_sys ) ; then |
---|
| 400 | echo "IGCM_sys_Mkdir :" $@ |
---|
| 401 | fi |
---|
| 402 | if [ ! -d ${1} ]; then |
---|
| 403 | \mkdir -p $1 |
---|
| 404 | if [ $? -gt 0 ] ; then |
---|
| 405 | echo "IGCM_sys_Mkdir : erreur." |
---|
| 406 | IGCM_debug_Exit "IGCM_sys_Mkdir" |
---|
[622] | 407 | fi |
---|
[623] | 408 | fi |
---|
| 409 | # vérification : |
---|
| 410 | if [ ! -d ${1} ] ; then |
---|
| 411 | echo "IGCM_sys_Mkdir : erreur." |
---|
| 412 | IGCM_debug_Exit "IGCM_sys_Mkdir" |
---|
| 413 | fi |
---|
| 414 | IGCM_debug_PopStack "IGCM_sys_Mkdir" |
---|
[622] | 415 | } |
---|
| 416 | |
---|
| 417 | #D-#================================================== |
---|
| 418 | #D-function IGCM_sys_MkdirArchive |
---|
| 419 | #D-* Purpose: Mkdir on Archive |
---|
| 420 | #D-* Examples: |
---|
| 421 | #D- |
---|
| 422 | function IGCM_sys_MkdirArchive { |
---|
[623] | 423 | IGCM_debug_PushStack "IGCM_sys_MkdirArchive" $@ |
---|
| 424 | if ( $DEBUG_sys ) ; then |
---|
| 425 | echo "IGCM_sys_MkdirArchive :" $@ |
---|
| 426 | fi |
---|
| 427 | #- creation de repertoire sur le serveur fichier |
---|
| 428 | if [ ! -d ${1} ]; then |
---|
| 429 | \mkdir -p $1 |
---|
| 430 | if [ $? -gt 0 ] ; then |
---|
| 431 | echo "IGCM_sys_MkdirArchive : erreur." |
---|
| 432 | IGCM_debug_Exit "IGCM_sys_MkdirArchive" |
---|
[622] | 433 | fi |
---|
[623] | 434 | fi |
---|
| 435 | IGCM_debug_PopStack "IGCM_sys_MkdirArchive" |
---|
[622] | 436 | } |
---|
| 437 | |
---|
| 438 | #D-#================================================== |
---|
| 439 | #D-function IGCM_sys_MkdirWork |
---|
| 440 | #D-* Purpose: Mkdir on Work |
---|
| 441 | #D-* Examples: |
---|
| 442 | #D- |
---|
| 443 | function IGCM_sys_MkdirWork { |
---|
[623] | 444 | IGCM_debug_PushStack "IGCM_sys_MkdirWork" $@ |
---|
| 445 | if ( $DEBUG_sys ) ; then |
---|
| 446 | echo "IGCM_sys_MkdirWork :" $@ |
---|
| 447 | fi |
---|
| 448 | #- creation de repertoire sur le serveur fichier |
---|
| 449 | if [ ! -d ${1} ]; then |
---|
| 450 | \mkdir -p $1 |
---|
| 451 | if [ $? -gt 0 ] ; then |
---|
| 452 | echo "IGCM_sys_MkdirWork : erreur." |
---|
| 453 | IGCM_debug_Exit "IGCM_sys_MkdirWork" |
---|
[622] | 454 | fi |
---|
[623] | 455 | fi |
---|
| 456 | IGCM_debug_PopStack "IGCM_sys_MkdirWork" |
---|
[622] | 457 | } |
---|
| 458 | |
---|
| 459 | #D-#================================================== |
---|
| 460 | #D-function IGCM_sys_Cd |
---|
| 461 | #D-* Purpose: master cd command |
---|
| 462 | #D-* Examples: |
---|
| 463 | #D- |
---|
| 464 | function IGCM_sys_Cd { |
---|
[623] | 465 | IGCM_debug_PushStack "IGCM_sys_Cd" $@ |
---|
| 466 | if ( $DEBUG_sys ) ; then |
---|
| 467 | echo "IGCM_sys_Cd :" $@ |
---|
| 468 | fi |
---|
| 469 | \cd $1 |
---|
| 470 | if [ $? -gt 0 ] ; then |
---|
| 471 | echo "IGCM_sys_Cd : erreur." |
---|
| 472 | IGCM_debug_Exit "IGCM_sys_Cd" |
---|
| 473 | fi |
---|
| 474 | IGCM_debug_PopStack "IGCM_sys_Cd" |
---|
[622] | 475 | } |
---|
| 476 | |
---|
| 477 | #D-#================================================== |
---|
| 478 | #D-function IGCM_sys_Chmod |
---|
| 479 | #D-* Purpose: Chmod |
---|
| 480 | #D-* Examples: |
---|
| 481 | #D- |
---|
| 482 | function IGCM_sys_Chmod { |
---|
[623] | 483 | IGCM_debug_PushStack "IGCM_sys_Chmod" -- $@ |
---|
| 484 | if ( $DEBUG_sys ) ; then |
---|
| 485 | echo "IGCM_sys_Chmod :" $@ |
---|
| 486 | fi |
---|
| 487 | if [ $DRYRUN -le 1 ]; then |
---|
| 488 | \chmod $@ |
---|
| 489 | if [ $? -gt 0 ] ; then |
---|
| 490 | echo "IGCM_sys_Chmod : erreur." |
---|
| 491 | IGCM_debug_Exit "IGCM_sys_Chmod" |
---|
[622] | 492 | fi |
---|
[623] | 493 | else |
---|
| 494 | ( ${DEBUG_debug} ) && echo "DRYRUN mode = " $DRYRUN >> stack |
---|
| 495 | fi |
---|
| 496 | IGCM_debug_PopStack "IGCM_sys_Chmod" |
---|
[622] | 497 | } |
---|
| 498 | |
---|
| 499 | #D-#================================================== |
---|
| 500 | #D-function IGCM_sys_FileSize |
---|
| 501 | #D-* Purpose: Filesize |
---|
| 502 | #D-* Examples: |
---|
| 503 | #D- |
---|
| 504 | function IGCM_sys_FileSize { |
---|
[623] | 505 | IGCM_debug_PushStack "IGCM_sys_FileSize" $@ |
---|
[622] | 506 | |
---|
[623] | 507 | typeset sizeF |
---|
| 508 | set +A sizeF -- $( ls -la ${1} ) |
---|
| 509 | if [ $? -gt 0 ] ; then |
---|
| 510 | IGCM_debug_Exit "IGCM_sys_FileSize" |
---|
| 511 | fi |
---|
| 512 | eval ${2}=${sizeF[4]} |
---|
[622] | 513 | |
---|
[623] | 514 | IGCM_debug_PopStack "IGCM_sys_FileSize" |
---|
[622] | 515 | } |
---|
| 516 | |
---|
| 517 | #D-#================================================== |
---|
| 518 | #D-function IGCM_sys_TestDir |
---|
| 519 | #D-* Purpose: Test Directory that must exists |
---|
| 520 | #D-* Examples: |
---|
| 521 | #D- |
---|
| 522 | function IGCM_sys_TestDir { |
---|
[623] | 523 | IGCM_debug_PushStack "IGCM_sys_TestDir" $@ |
---|
| 524 | if ( $DEBUG_sys ) ; then |
---|
| 525 | echo "IGCM_sys_TestDir :" $@ |
---|
| 526 | fi |
---|
| 527 | typeset ExistFlag |
---|
| 528 | ExistFlag=$( [ -d $1 ] && echo 0 || echo 1 ) |
---|
| 529 | IGCM_debug_PopStack "IGCM_sys_TestDir" |
---|
[622] | 530 | |
---|
[623] | 531 | return ${ExistFlag} |
---|
[622] | 532 | } |
---|
| 533 | |
---|
| 534 | #D-#================================================== |
---|
| 535 | #D-function IGCM_sys_TestDirArchive |
---|
| 536 | #D-* Purpose: Test Directory that must exists on Archive |
---|
| 537 | #D-* Examples: |
---|
| 538 | #D- |
---|
| 539 | function IGCM_sys_TestDirArchive { |
---|
[623] | 540 | IGCM_debug_PushStack "IGCM_sys_TestDirArchive" $@ |
---|
| 541 | if ( $DEBUG_sys ) ; then |
---|
| 542 | echo "IGCM_sys_TestDirArchive :" $@ |
---|
| 543 | fi |
---|
| 544 | typeset ExistFlag |
---|
| 545 | ExistFlag=$( [ -d $1 ] && echo 0 || echo 1 ) |
---|
| 546 | IGCM_debug_PopStack "IGCM_sys_TestDirArchive" |
---|
[622] | 547 | |
---|
[623] | 548 | return ${ExistFlag} |
---|
[622] | 549 | } |
---|
| 550 | |
---|
| 551 | #D-#================================================== |
---|
[623] | 552 | #D-function IGCM_sys_IsFileArchived |
---|
| 553 | #D-* Purpose: Test file that must NOT EXISTS on Archive |
---|
| 554 | #D-* Examples: |
---|
| 555 | #D- |
---|
| 556 | function IGCM_sys_IsFileArchived { |
---|
| 557 | IGCM_debug_PushStack "IGCM_sys_IsFileArchived" $@ |
---|
| 558 | if ( $DEBUG_sys ) ; then |
---|
| 559 | echo "IGCM_sys_IsFileArchived :" $@ |
---|
| 560 | fi |
---|
| 561 | typeset IsArchivedFlag |
---|
| 562 | IsArchivedFlag=$( [ X$( echo $1 | grep ^\/ccc\/store ) != X ] && echo 0 || echo 1 ) |
---|
| 563 | IGCM_debug_PopStack "IGCM_sys_IsFileArchived" |
---|
| 564 | |
---|
| 565 | return ${IsArchivedFlag} |
---|
| 566 | } |
---|
| 567 | |
---|
| 568 | #D-#================================================== |
---|
[622] | 569 | #D-function IGCM_sys_TestFileArchive |
---|
| 570 | #D-* Purpose: Test file that must NOT EXISTS on Archive |
---|
| 571 | #D-* Examples: |
---|
| 572 | #D- |
---|
| 573 | function IGCM_sys_TestFileArchive { |
---|
[623] | 574 | IGCM_debug_PushStack "IGCM_sys_TestFileArchive" $@ |
---|
| 575 | typeset ExistFlag |
---|
| 576 | ExistFlag=$( [ -f $1 ] && echo 0 || echo 1 ) |
---|
| 577 | IGCM_debug_PopStack "IGCM_sys_TestFileArchive" |
---|
[622] | 578 | |
---|
[623] | 579 | return ${ExistFlag} |
---|
[622] | 580 | } |
---|
| 581 | |
---|
| 582 | #D-#================================================== |
---|
[623] | 583 | #D-function IGCM_sys_TestFileBuffer |
---|
| 584 | #D-* Purpose: Test file that must NOT EXISTS on Buffer |
---|
| 585 | #D-* Examples: |
---|
| 586 | #D- |
---|
| 587 | function IGCM_sys_TestFileBuffer { |
---|
| 588 | IGCM_debug_PushStack "IGCM_sys_TestFileBuffer" $@ |
---|
| 589 | typeset ExistFlag |
---|
| 590 | ExistFlag=$( [ -f $1 ] && echo 0 || echo 1 ) |
---|
| 591 | IGCM_debug_PopStack "IGCM_sys_TestFileBuffer" |
---|
| 592 | |
---|
| 593 | return ${ExistFlag} |
---|
| 594 | } |
---|
| 595 | |
---|
| 596 | #D-#================================================== |
---|
[622] | 597 | #D-function IGCM_sys_CountFileArchive |
---|
| 598 | #D-* Purpose: Count files on Archive filesystem |
---|
| 599 | #D-* Examples: |
---|
| 600 | #D- |
---|
| 601 | function IGCM_sys_CountFileArchive { |
---|
[623] | 602 | IGCM_debug_PushStack "IGCM_sys_CountFileArchive" $@ |
---|
| 603 | ls ${@} 2>/dev/null | wc -l |
---|
| 604 | if [ $? -gt 0 ] ; then |
---|
| 605 | echo "IGCM_sys_CountFileArchive : erreur." |
---|
| 606 | fi |
---|
| 607 | IGCM_debug_PopStack "IGCM_sys_CountFileArchive" |
---|
[622] | 608 | } |
---|
| 609 | |
---|
| 610 | #D-#================================================== |
---|
[623] | 611 | #D-function IGCM_sys_CountFileBuffer |
---|
| 612 | #D-* Purpose: Count files on Scratch filesystem |
---|
| 613 | #D-* Examples: |
---|
| 614 | #D- |
---|
| 615 | function IGCM_sys_CountFileBuffer { |
---|
| 616 | IGCM_debug_PushStack "IGCM_sys_CountFileBuffer" $@ |
---|
| 617 | ls ${@} 2>/dev/null | wc -l |
---|
| 618 | if [ $? -gt 0 ] ; then |
---|
| 619 | echo "IGCM_sys_CountFileBuffer : erreur." |
---|
| 620 | fi |
---|
| 621 | IGCM_debug_PopStack "IGCM_sys_CountFileBuffer" |
---|
| 622 | } |
---|
| 623 | |
---|
| 624 | #D-#================================================== |
---|
[622] | 625 | #D-function IGCM_sys_Tree |
---|
| 626 | #D-* Purpose: Tree directories with files on ${ARCHIVE} |
---|
| 627 | #D-* Examples: IGCM_sys_Tree ${R_IN} ${R_OUT} |
---|
| 628 | #D- |
---|
| 629 | function IGCM_sys_Tree { |
---|
[623] | 630 | IGCM_debug_PushStack "IGCM_sys_Tree" $@ |
---|
| 631 | if ( $DEBUG_sys ) ; then |
---|
| 632 | echo "IGCM_sys_Tree :" $@ |
---|
| 633 | fi |
---|
[622] | 634 | |
---|
[623] | 635 | \ls -lR ${@} |
---|
[622] | 636 | |
---|
[623] | 637 | IGCM_debug_PopStack "IGCM_sys_Tree" |
---|
[622] | 638 | } |
---|
| 639 | |
---|
| 640 | #D-#================================================== |
---|
| 641 | #D-function IGCM_sys_Tar |
---|
[623] | 642 | #D-* Purpose: master tar command |
---|
[622] | 643 | #D-* Examples: |
---|
| 644 | #D- |
---|
| 645 | function IGCM_sys_Tar { |
---|
[623] | 646 | IGCM_debug_PushStack "IGCM_sys_Tar" $@ |
---|
| 647 | if ( $DEBUG_sys ) ; then |
---|
| 648 | echo "IGCM_sys_Tar :" $@ |
---|
| 649 | fi |
---|
| 650 | \tar cf $@ |
---|
| 651 | if [ $? -gt 0 ] ; then |
---|
| 652 | echo "IGCM_sys_Tar : erreur." |
---|
| 653 | IGCM_debug_Exit "IGCM_sys_Tar" |
---|
| 654 | fi |
---|
| 655 | IGCM_debug_PopStack "IGCM_sys_Tar" |
---|
[622] | 656 | } |
---|
| 657 | |
---|
| 658 | #D-#================================================== |
---|
| 659 | #D-function IGCM_sys_UnTar |
---|
| 660 | #D-* Purpose: master un-tar command |
---|
| 661 | #D-* Examples: |
---|
| 662 | #D- |
---|
| 663 | function IGCM_sys_UnTar { |
---|
[623] | 664 | IGCM_debug_PushStack "IGCM_sys_UnTar" $@ |
---|
| 665 | if ( $DEBUG_sys ) ; then |
---|
| 666 | echo "IGCM_sys_UnTar :" $@ |
---|
| 667 | fi |
---|
| 668 | \tar xvf $1 |
---|
| 669 | if [ $? -gt 0 ] ; then |
---|
| 670 | echo "IGCM_sys_UnTar : erreur." |
---|
| 671 | IGCM_debug_Exit "IGCM_sys_UnTar" |
---|
| 672 | fi |
---|
| 673 | IGCM_debug_PopStack "IGCM_sys_UnTar" |
---|
[622] | 674 | } |
---|
| 675 | |
---|
| 676 | #D-#================================================== |
---|
| 677 | #D-function IGCM_sys_Qsub |
---|
| 678 | #D-* Purpose: Qsub new job |
---|
| 679 | #D-* Examples: |
---|
| 680 | #D- |
---|
| 681 | function IGCM_sys_Qsub { |
---|
[623] | 682 | IGCM_debug_PushStack "IGCM_sys_Qsub" $@ |
---|
| 683 | if ( $DEBUG_sys ) ; then |
---|
| 684 | echo "IGCM_sys_Qsub :" $@ |
---|
| 685 | fi |
---|
| 686 | typeset options |
---|
| 687 | if [ ${config_UserChoices_JobName}.${CumulPeriod} = "." ] ; then |
---|
| 688 | options=" -o ${Script_Output} -e ${Script_Output}" |
---|
| 689 | else |
---|
| 690 | options=" -o ${Script_Output} -e ${Script_Output} -r ${config_UserChoices_JobName}.${CumulPeriod}" |
---|
| 691 | fi |
---|
[622] | 692 | |
---|
[625] | 693 | /usr/bin/ccc_msub ${options} < $1 |
---|
[623] | 694 | if [ $? -gt 0 ] ; then |
---|
| 695 | echo "IGCM_sys_Qsub : erreur ${options} $1" |
---|
| 696 | IGCM_debug_Exit "IGCM_sys_Qsub" |
---|
| 697 | fi |
---|
| 698 | IGCM_debug_PopStack "IGCM_sys_Qsub" |
---|
[622] | 699 | } |
---|
| 700 | |
---|
| 701 | #D-#================================================== |
---|
| 702 | #D-function IGCM_sys_QsubPost |
---|
| 703 | #D-* Purpose: Qsub new job on scalaire |
---|
| 704 | #D-* Examples: |
---|
| 705 | #D- |
---|
| 706 | function IGCM_sys_QsubPost { |
---|
[623] | 707 | IGCM_debug_PushStack "IGCM_sys_QsubPost" $@ |
---|
| 708 | if ( $DEBUG_sys ) ; then |
---|
| 709 | echo "IGCM_sys_QsubPost :" $@ |
---|
| 710 | fi |
---|
[773] | 711 | MY_PROJECT=$(echo ${BRIDGE_MSUB_PROJECT} | cut -d@ -f1 ) |
---|
[767] | 712 | /usr/bin/ccc_msub -Q normal -A ${MY_PROJECT} -o ${POST_DIR}/${Script_Post_Output}.out -e ${POST_DIR}/${Script_Post_Output}.out ${libIGCM_POST}/$1.job |
---|
[623] | 713 | if [ $? -gt 0 ] ; then |
---|
| 714 | echo "IGCM_sys_QsubPost : erreur " $@ |
---|
| 715 | IGCM_debug_Exit "IGCM_sys_QsubPost" |
---|
| 716 | fi |
---|
| 717 | IGCM_debug_PopStack "IGCM_sys_QsubPost" |
---|
[622] | 718 | } |
---|
| 719 | |
---|
| 720 | #D-************************* |
---|
[623] | 721 | #D- File transfer functions |
---|
[622] | 722 | #D-************************* |
---|
| 723 | #D- |
---|
| 724 | |
---|
| 725 | #D-#================================================== |
---|
| 726 | #D-function IGCM_sys_Rsync_out |
---|
| 727 | #D-* Purpose: treat return val of rsync |
---|
| 728 | #D-* Examples: IGCM_sys_Rsync_out out_RET_rsync |
---|
| 729 | #D- Error values and explanations can depend on your system version. |
---|
| 730 | function IGCM_sys_Rsync_out { |
---|
[719] | 731 | status=$1 |
---|
| 732 | if [ ! $status ] ; then |
---|
[623] | 733 | echo "rsync error !" |
---|
| 734 | fi |
---|
[622] | 735 | |
---|
[623] | 736 | if [ $MYLANG = "fr" ]; then |
---|
[719] | 737 | case $status in |
---|
[623] | 738 | 0) return ;; |
---|
| 739 | 1) echo "Erreur de rsync ; RERR_SYNTAX : " |
---|
| 740 | echo "Erreur de syntaxe ou d'utilisation." |
---|
| 741 | return;; |
---|
| 742 | 2) echo "Erreur de rsync ; RERR_PROTOCOL : " |
---|
| 743 | echo "Incompatibilité de protocole." |
---|
| 744 | return;; |
---|
| 745 | 3) echo "Erreur de rsync ; RERR_FILESELECT 3" |
---|
| 746 | echo "Erreurs lors de la sélection des fichiers d'entrée sortie et" |
---|
| 747 | echo "répertoires" |
---|
| 748 | return;; |
---|
| 749 | 4) echo "Erreur de rsync ; RERR_UNSUPPORTED" |
---|
| 750 | echo "Action demandée non supportée : une tentative de manipulation de" |
---|
| 751 | echo "fichiers 64-bits sur une plate-forme qui ne les supporte pas a" |
---|
| 752 | echo "été faite ; ou une option qui est supportée par le client mais" |
---|
| 753 | echo "pas par le serveur a été spécifiée." |
---|
| 754 | return;; |
---|
| 755 | 10) echo "Erreur de rsync ; RERR_SOCKETIO" |
---|
| 756 | echo "Erreur dans le socket d'entrée sortie" |
---|
| 757 | return;; |
---|
| 758 | 11) echo "Erreur de rsync ; RERR_FILEIO" |
---|
| 759 | echo "Erreur d'entrée sortie fichier" |
---|
| 760 | return;; |
---|
| 761 | 12) echo "Erreur de rsync ; RERR_STREAMIO" |
---|
| 762 | echo "Erreur dans flux de donnée du protocole rsync" |
---|
| 763 | return;; |
---|
| 764 | 13) echo "Erreur de rsync ; RERR_MESSAGEIO" |
---|
| 765 | echo "Erreur avec les diagnostics du programme" |
---|
| 766 | return;; |
---|
| 767 | 14) echo "Erreur de rsync ; RERR_IPC" |
---|
| 768 | echo "Erreur dans le code IPC" |
---|
| 769 | return;; |
---|
| 770 | 20) echo "Erreur de rsync ; RERR_SIGNAL" |
---|
| 771 | echo "SIGUSR1 ou SIGINT reçu" |
---|
| 772 | return;; |
---|
| 773 | 21) echo "Erreur de rsync ; RERR_WAITCHILD" |
---|
| 774 | echo "Une erreur retournée par waitpid()" |
---|
| 775 | return;; |
---|
| 776 | 22) echo "Erreur de rsync ; RERR_MALLOC" |
---|
| 777 | echo "Erreur lors de l'allocation des tampons de mémoire de coeur" |
---|
| 778 | return;; |
---|
| 779 | 23) echo "" |
---|
| 780 | echo "Erreur fichier inexistant" |
---|
| 781 | return;; |
---|
| 782 | 30) echo "Erreur de rsync ; RERR_TIMEOUT" |
---|
| 783 | echo "Temps d'attente écoulé dans l'envoi/réception de données" |
---|
| 784 | return;; |
---|
[719] | 785 | *) echo "Erreur de rsync : code de retour de rsync inconnu :" $status |
---|
[623] | 786 | return;; |
---|
| 787 | esac |
---|
| 788 | elif [ $MYLANG = "en" ] ; then |
---|
[719] | 789 | case $status in |
---|
[623] | 790 | 0) return;; |
---|
| 791 | 1) echo "rsync error : Syntax or usage error " |
---|
| 792 | return;; |
---|
| 793 | 2) echo "rsync error : Protocol incompatibility " |
---|
| 794 | return;; |
---|
| 795 | 3) echo "rsync error : Errors selecting input/output files, dirs" |
---|
| 796 | return;; |
---|
| 797 | 4) echo "rsync error : Requested action not supported: an attempt" |
---|
| 798 | echo "was made to manipulate 64-bit files on a platform that cannot support" |
---|
| 799 | echo "them; or an option was specified that is supported by the client and" |
---|
| 800 | echo "not by the server." |
---|
| 801 | return;; |
---|
| 802 | 5) echo "rsync error : Error starting client-server protocol" |
---|
| 803 | return;; |
---|
| 804 | 10) echo "rsync error : Error in socket I/O " |
---|
| 805 | return;; |
---|
| 806 | 11) echo "rsync error : Error in file I/O " |
---|
| 807 | return;; |
---|
| 808 | 12) echo "rsync error : Error in rsync protocol data stream " |
---|
| 809 | return;; |
---|
| 810 | 13) echo "rsync error : Errors with program diagnostics " |
---|
| 811 | return;; |
---|
| 812 | 14) echo "rsync error : Error in IPC code " |
---|
| 813 | return;; |
---|
| 814 | 20) echo "rsync error : Received SIGUSR1 or SIGINT " |
---|
| 815 | return;; |
---|
| 816 | 21) echo "rsync error : Some error returned by waitpid() " |
---|
| 817 | return;; |
---|
| 818 | 22) echo "rsync error : Error allocating core memory buffers " |
---|
| 819 | return;; |
---|
| 820 | 23) echo "rsync error : Partial transfer due to error" |
---|
| 821 | return;; |
---|
| 822 | 24) echo "rsync error : Partial transfer due to vanished source files" |
---|
| 823 | return;; |
---|
| 824 | 30) echo "rsync error : Timeout in data send/receive " |
---|
| 825 | return;; |
---|
[719] | 826 | *) echo "rsync error : return code of rsync unknown :" $status |
---|
[623] | 827 | return;; |
---|
| 828 | esac |
---|
| 829 | else |
---|
| 830 | echo "unknown language $MYLANG." |
---|
| 831 | return |
---|
| 832 | fi |
---|
[622] | 833 | } |
---|
| 834 | |
---|
| 835 | #D-#================================================== |
---|
| 836 | #D-function IGCM_sys_Miror_libIGCM |
---|
| 837 | #D-* Purpose: Mirror libIGCM PATH and lib to cesium |
---|
| 838 | #D-* Examples: |
---|
| 839 | #D- |
---|
| 840 | function IGCM_sys_Mirror_libIGCM { |
---|
[623] | 841 | IGCM_debug_PushStack "IGCM_sys_Mirror_libIGCM" |
---|
| 842 | if ( $DEBUG_sys ) ; then |
---|
| 843 | echo "IGCM_sys_Mirror_libIGCM" |
---|
| 844 | fi |
---|
[622] | 845 | |
---|
[773] | 846 | typeset status |
---|
[622] | 847 | |
---|
[623] | 848 | mkdir -p ${HOME}/MIRROR/${PATHlibIGCM} |
---|
[622] | 849 | |
---|
[623] | 850 | echo ${RSYNC} ${RSYNC_opt} ${libIGCM} ${HOME}/MIRROR/${PATHlibIGCM} > out_rsync 2>&1 |
---|
| 851 | ${RSYNC} ${RSYNC_opt} ${libIGCM} ${HOME}/MIRROR/${PATHlibIGCM} >> out_rsync 2>&1 |
---|
[715] | 852 | status=$? |
---|
[622] | 853 | |
---|
[715] | 854 | if [ ${status} -gt 0 ] ; then |
---|
[623] | 855 | echo "IGCM_sys_Mirror_libIGCM Warning : no libIGCM on cesium." |
---|
| 856 | cat out_rsync |
---|
| 857 | fi |
---|
| 858 | IGCM_debug_PopStack "IGCM_sys_Mirror_libIGCM" |
---|
[622] | 859 | } |
---|
| 860 | |
---|
| 861 | #D-#================================================== |
---|
| 862 | #D-function IGCM_sys_Cp |
---|
| 863 | #D-* Purpose: generic cp |
---|
| 864 | #D-* Examples: |
---|
| 865 | #D- |
---|
| 866 | function IGCM_sys_Cp { |
---|
[623] | 867 | IGCM_debug_PushStack "IGCM_sys_Cp" $@ |
---|
| 868 | if ( $DEBUG_sys ) ; then |
---|
| 869 | echo "IGCM_sys_Cp :" $@ |
---|
| 870 | fi |
---|
[622] | 871 | |
---|
[715] | 872 | typeset status |
---|
[622] | 873 | |
---|
[623] | 874 | echo cp $@ > out_rsync 2>&1 |
---|
| 875 | \cp $@ >> out_rsync 2>&1 |
---|
[715] | 876 | status=$? |
---|
[622] | 877 | |
---|
[715] | 878 | if [ ${status} -gt 0 ] ; then |
---|
| 879 | echo "IGCM_sys_Cp : error code ${status}" |
---|
[623] | 880 | cat out_rsync |
---|
| 881 | IGCM_debug_Exit "IGCM_sys_Cp" |
---|
| 882 | else |
---|
| 883 | \rm out_rsync |
---|
| 884 | fi |
---|
| 885 | IGCM_debug_PopStack "IGCM_sys_Cp" |
---|
[622] | 886 | } |
---|
| 887 | |
---|
| 888 | #D-#================================================== |
---|
| 889 | #D-function IGCM_sys_Rm |
---|
| 890 | #D-* Purpose: generic rm |
---|
| 891 | #D-* Examples: |
---|
| 892 | #D- |
---|
| 893 | function IGCM_sys_Rm { |
---|
[623] | 894 | IGCM_debug_PushStack "IGCM_sys_Rm" -- $@ |
---|
| 895 | if ( $DEBUG_sys ) ; then |
---|
| 896 | echo "IGCM_sys_Rm :" $@ |
---|
| 897 | fi |
---|
[622] | 898 | |
---|
[715] | 899 | typeset status |
---|
[622] | 900 | |
---|
[623] | 901 | echo rm $@ > out_rsync 2>&1 |
---|
| 902 | \rm $@ >> out_rsync 2>&1 |
---|
[715] | 903 | status=$? |
---|
[622] | 904 | |
---|
[715] | 905 | if [ ${status} -gt 0 ] ; then |
---|
| 906 | echo "IGCM_sys_Rm : error code ${status}" |
---|
[623] | 907 | cat out_rsync |
---|
| 908 | IGCM_debug_Exit "IGCM_sys_Rm" |
---|
| 909 | else |
---|
| 910 | \rm out_rsync |
---|
| 911 | fi |
---|
| 912 | IGCM_debug_PopStack "IGCM_sys_Rm" |
---|
[622] | 913 | } |
---|
| 914 | |
---|
| 915 | #D-#================================================== |
---|
| 916 | #D-function IGCM_sys_RmRunDir |
---|
| 917 | #D-* Purpose: rm tmpdir (dummy function most of the time batch |
---|
| 918 | #D- scheduler will do the job) |
---|
| 919 | #D-* Examples: |
---|
| 920 | #D- |
---|
| 921 | function IGCM_sys_RmRunDir { |
---|
[623] | 922 | IGCM_debug_PushStack "IGCM_sys_RmRunDir" -- $@ |
---|
| 923 | if ( $DEBUG_sys ) ; then |
---|
| 924 | echo "IGCM_sys_RmRunDir :" $@ |
---|
| 925 | fi |
---|
[622] | 926 | |
---|
[715] | 927 | typeset status |
---|
[622] | 928 | |
---|
[623] | 929 | echo rm $@ > out_rsync 2>&1 |
---|
| 930 | \rm $@ >> out_rsync 2>&1 |
---|
[715] | 931 | status=$? |
---|
[622] | 932 | |
---|
[715] | 933 | if [ ${status} -gt 0 ] ; then |
---|
| 934 | echo "IGCM_sys_RmRunDir : error code ${status}" |
---|
[623] | 935 | cat out_rsync |
---|
| 936 | IGCM_debug_Exit "IGCM_sys_RmRunDir" |
---|
| 937 | else |
---|
| 938 | \rm out_rsync |
---|
| 939 | fi |
---|
| 940 | IGCM_debug_PopStack "IGCM_sys_RmRunDir" |
---|
[622] | 941 | } |
---|
| 942 | |
---|
| 943 | #D-#================================================== |
---|
| 944 | #D-function IGCM_sys_Mv |
---|
| 945 | #D-* Purpose: generic move |
---|
| 946 | #D-* Examples: |
---|
| 947 | #D- |
---|
| 948 | function IGCM_sys_Mv { |
---|
[623] | 949 | IGCM_debug_PushStack "IGCM_sys_Mv" $@ |
---|
| 950 | if ( $DEBUG_sys ) ; then |
---|
| 951 | echo "IGCM_sys_Mv :" $@ |
---|
| 952 | fi |
---|
[622] | 953 | |
---|
[623] | 954 | if [ $DRYRUN = 0 ]; then |
---|
[622] | 955 | |
---|
[715] | 956 | typeset status |
---|
[623] | 957 | |
---|
| 958 | echo mv $@ > out_rsync 2>&1 |
---|
| 959 | \mv $@ >> out_rsync 2>&1 |
---|
[715] | 960 | status=$? |
---|
[623] | 961 | |
---|
[715] | 962 | if [ ${status} -gt 0 ] ; then |
---|
| 963 | echo "IGCM_sys_Mv : error code ${status}" |
---|
[623] | 964 | cat out_rsync |
---|
| 965 | IGCM_debug_Exit "IGCM_sys_Mv" |
---|
[622] | 966 | else |
---|
[623] | 967 | \rm out_rsync |
---|
[622] | 968 | fi |
---|
[623] | 969 | else |
---|
| 970 | ( ${DEBUG_debug} ) && echo "DRYRUN mode = " $DRYRUN >> stack |
---|
| 971 | fi |
---|
[622] | 972 | |
---|
[623] | 973 | IGCM_debug_PopStack "IGCM_sys_Mv" |
---|
[622] | 974 | } |
---|
| 975 | |
---|
| 976 | #D-#================================================== |
---|
| 977 | #D-function IGCM_sys_Put_Dir |
---|
| 978 | #D-* Purpose: Copy a complete directory on $(ARCHIVE) |
---|
| 979 | #D-* Examples: |
---|
| 980 | #D- |
---|
| 981 | function IGCM_sys_Put_Dir { |
---|
[623] | 982 | IGCM_debug_PushStack "IGCM_sys_Put_Dir" $@ |
---|
| 983 | if ( $DEBUG_sys ) ; then |
---|
| 984 | echo "IGCM_sys_Put_Dir :" $@ |
---|
| 985 | fi |
---|
| 986 | if [ $DRYRUN = 0 ]; then |
---|
| 987 | if [ ! -d ${1} ] ; then |
---|
| 988 | echo "WARNING : IGCM_sys_Put_Dir ${1} DOES NOT EXIST ." |
---|
| 989 | IGCM_debug_PopStack "IGCM_sys_Put_Dir" |
---|
| 990 | return |
---|
[622] | 991 | fi |
---|
| 992 | |
---|
[715] | 993 | typeset status |
---|
[622] | 994 | |
---|
[623] | 995 | # Only if we use rsync |
---|
| 996 | #IGCM_sys_TestDirArchive $( dirname $2 ) |
---|
| 997 | # |
---|
| 998 | #USUAL WAY |
---|
| 999 | \cp -r $1 $2 > out_rsync 2>&1 |
---|
[715] | 1000 | status=$? |
---|
[622] | 1001 | |
---|
[715] | 1002 | if [ ${status} -gt 0 ] ; then |
---|
| 1003 | echo "IGCM_sys_Put_Dir : error code ${status}" |
---|
[623] | 1004 | cat out_rsync |
---|
| 1005 | IGCM_debug_Exit "IGCM_sys_Put_Dir" |
---|
[622] | 1006 | else |
---|
[623] | 1007 | \rm out_rsync |
---|
[622] | 1008 | fi |
---|
[623] | 1009 | else |
---|
| 1010 | ( ${DEBUG_debug} ) && echo "DRYRUN mode = " $DRYRUN >> stack |
---|
| 1011 | fi |
---|
| 1012 | IGCM_debug_PopStack "IGCM_sys_Put_Dir" |
---|
[622] | 1013 | } |
---|
| 1014 | |
---|
| 1015 | #D-#================================================== |
---|
| 1016 | #D-function IGCM_sys_Get_Dir |
---|
[623] | 1017 | #D-* Purpose: Copy a complete directory from ${ARCHIVE} |
---|
[622] | 1018 | #D-* Examples: |
---|
| 1019 | #D- |
---|
| 1020 | function IGCM_sys_Get_Dir { |
---|
[623] | 1021 | IGCM_debug_PushStack "IGCM_sys_Get_Dir" $@ |
---|
| 1022 | if ( $DEBUG_sys ) ; then |
---|
| 1023 | echo "IGCM_sys_Get_Dir :" $@ |
---|
| 1024 | fi |
---|
| 1025 | if [ $DRYRUN = 0 ]; then |
---|
| 1026 | # if [ ! -d ${1} ] ; then |
---|
| 1027 | # echo "WARNING : IGCM_sys_Get_Dir ${1} DOES NOT EXIST ." |
---|
| 1028 | # IGCM_debug_PopStack "IGCM_sys_Get_Dir" |
---|
| 1029 | # return |
---|
| 1030 | # fi |
---|
[622] | 1031 | |
---|
[708] | 1032 | typeset NB_ESSAI DELAI status i |
---|
| 1033 | # number of tentative |
---|
| 1034 | NB_ESSAI=3 |
---|
| 1035 | # time delay between tentative |
---|
| 1036 | DELAI=2 |
---|
[622] | 1037 | |
---|
[676] | 1038 | # Only if we use rsync |
---|
| 1039 | #IGCM_sys_TestDirArchive $( dirname $2 ) |
---|
| 1040 | # |
---|
[708] | 1041 | # USUAL WAY |
---|
| 1042 | # add 'ccc_hsm get' (to demigrate all offline files) to reduce time of this command : |
---|
[713] | 1043 | ccc_hsm get -r $1 |
---|
[622] | 1044 | |
---|
[709] | 1045 | i=0 |
---|
[708] | 1046 | while [ $i -lt $NB_ESSAI ] ; do |
---|
| 1047 | \cp -ur $1 $2 >> out_rsync 2>&1 |
---|
| 1048 | status=$? |
---|
| 1049 | if [ ${status} -gt 0 ]; then |
---|
[713] | 1050 | IGCM_debug_Print 2 "IGCM_sys_Get_Dir : cp failed error code ${status} ${i}/${NB_ESSAI}" |
---|
[708] | 1051 | IGCM_debug_Print 2 "IGCM_sys_Get_Dir : sleep ${DELAI} seconds and try again." |
---|
| 1052 | sleep $DELAI |
---|
| 1053 | else |
---|
| 1054 | break |
---|
| 1055 | fi |
---|
| 1056 | (( i = i + 1 )) |
---|
| 1057 | done |
---|
| 1058 | |
---|
| 1059 | if [ ${status} -gt 0 ] ; then |
---|
[623] | 1060 | echo "IGCM_sys_Get_Dir : error." |
---|
| 1061 | cat out_rsync |
---|
| 1062 | IGCM_debug_Exit "IGCM_sys_Get_Dir" |
---|
[622] | 1063 | else |
---|
[623] | 1064 | \rm out_rsync |
---|
[622] | 1065 | fi |
---|
[623] | 1066 | else |
---|
| 1067 | ( ${DEBUG_debug} ) && echo "DRYRUN mode = " $DRYRUN >> stack |
---|
| 1068 | fi |
---|
| 1069 | IGCM_debug_PopStack "IGCM_sys_Get_Dir" |
---|
[622] | 1070 | } |
---|
| 1071 | |
---|
| 1072 | #D-#================================================== |
---|
| 1073 | #D-function IGCM_sys_Get_Master |
---|
| 1074 | #D-* Purpose: Copy a complete directory from MASTER filesystem |
---|
| 1075 | #D-* Examples: |
---|
| 1076 | #D- |
---|
| 1077 | function IGCM_sys_Get_Master { |
---|
[623] | 1078 | IGCM_debug_PushStack "IGCM_sys_Get_Master" $@ |
---|
| 1079 | if ( $DEBUG_sys ) ; then |
---|
| 1080 | echo "IGCM_sys_Get_Master :" $@ |
---|
| 1081 | fi |
---|
| 1082 | if [ $DRYRUN = 0 ]; then |
---|
[640] | 1083 | if ( [ ! -d ${1} ] && [ ! -f ${1} ] ) ; then |
---|
[623] | 1084 | echo "WARNING : IGCM_sys_Get_Master ${1} DOES NOT EXIST ." |
---|
| 1085 | IGCM_debug_PopStack "IGCM_sys_Get_Master" |
---|
| 1086 | return |
---|
[622] | 1087 | fi |
---|
| 1088 | |
---|
[708] | 1089 | typeset NB_ESSAI DELAI status i |
---|
| 1090 | # number of tentative |
---|
| 1091 | NB_ESSAI=3 |
---|
| 1092 | # time delay between tentative |
---|
| 1093 | DELAI=2 |
---|
[622] | 1094 | |
---|
[709] | 1095 | i=0 |
---|
[708] | 1096 | while [ $i -lt $NB_ESSAI ] ; do |
---|
| 1097 | \cp -urL $1 $2 > out_rsync 2>&1 |
---|
| 1098 | status=$? |
---|
| 1099 | if [ ${status} -gt 0 ]; then |
---|
[713] | 1100 | IGCM_debug_Print 2 "IGCM_sys_Get_Master : cp failed error code ${status} ${i}/${NB_ESSAI}" |
---|
[708] | 1101 | IGCM_debug_Print 2 "IGCM_sys_Get_Master : sleep ${DELAI} seconds and try again." |
---|
| 1102 | sleep $DELAI |
---|
| 1103 | else |
---|
| 1104 | break |
---|
| 1105 | fi |
---|
| 1106 | (( i = i + 1 )) |
---|
| 1107 | done |
---|
[622] | 1108 | |
---|
[708] | 1109 | if [ ${status} -gt 0 ] ; then |
---|
[623] | 1110 | echo "IGCM_sys_Get_Master : error." |
---|
| 1111 | cat out_rsync |
---|
| 1112 | IGCM_debug_Exit "IGCM_sys_Get_Master" |
---|
[622] | 1113 | else |
---|
[623] | 1114 | \rm out_rsync |
---|
[622] | 1115 | fi |
---|
[623] | 1116 | else |
---|
| 1117 | ( ${DEBUG_debug} ) && echo "DRYRUN mode = " $DRYRUN >> stack |
---|
| 1118 | fi |
---|
| 1119 | IGCM_debug_PopStack "IGCM_sys_Get_Master" |
---|
[622] | 1120 | } |
---|
| 1121 | |
---|
[689] | 1122 | #==================================================== |
---|
| 1123 | #- Call IGCM_sys_Mirror_libIGCM now ! |
---|
| 1124 | if ( $MirrorlibIGCM ) ; then |
---|
| 1125 | IGCM_sys_Mirror_libIGCM |
---|
| 1126 | fi |
---|
| 1127 | |
---|
[622] | 1128 | #D-#================================================== |
---|
| 1129 | #D-function IGCM_sys_Put_Rest |
---|
[623] | 1130 | #D-* Purpose: Put computied restarts on ${ARCHIVE}. |
---|
[622] | 1131 | #D- File and target directory must exist. |
---|
| 1132 | #D-* Examples: |
---|
| 1133 | #D- |
---|
| 1134 | function IGCM_sys_Put_Rest { |
---|
[623] | 1135 | IGCM_debug_PushStack "IGCM_sys_Put_Rest" $@ |
---|
| 1136 | if ( $DEBUG_sys ) ; then |
---|
| 1137 | echo "IGCM_sys_Put_Rest :" $@ |
---|
| 1138 | fi |
---|
| 1139 | if [ $DRYRUN = 0 ]; then |
---|
| 1140 | if [ ! -f ${1} ] ; then |
---|
| 1141 | echo "ERROR : IGCM_sys_Put_Rest ${1} DOES NOT EXIST ." |
---|
| 1142 | IGCM_debug_Exit "IGCM_sys_Put_Rest" |
---|
[622] | 1143 | fi |
---|
| 1144 | |
---|
[715] | 1145 | typeset status |
---|
[623] | 1146 | # |
---|
| 1147 | # USUAL WAY |
---|
| 1148 | \cp $1 $2 > out_rsync 2>&1 |
---|
[715] | 1149 | status=$? |
---|
[622] | 1150 | |
---|
[623] | 1151 | # #RSYNC WITH NETWORK SSH CALL |
---|
| 1152 | # echo ${RSYNC} ${RSYNC_opt} -e ssh ${RUN_DIR}/$1 ${STOREHOST}:${2} > out_rsync 2>&1 |
---|
| 1153 | # ${RSYNC} ${RSYNC_opt} -e ssh ${RUN_DIR}/$1 ${STOREHOST}:${2} >> out_rsync 2>&1 |
---|
[622] | 1154 | |
---|
[623] | 1155 | # #RSYNC WITH NFS USE |
---|
| 1156 | # echo ${RSYNC} ${RSYNC_opt} ${RUN_DIR}/$1 ${2} > out_rsync 2>&1 |
---|
| 1157 | # ${RSYNC} ${RSYNC_opt} ${RUN_DIR}/$1 ${2} >> out_rsync 2>&1 |
---|
[622] | 1158 | |
---|
[715] | 1159 | # status=$? |
---|
| 1160 | # IGCM_sys_Rsync_out $status |
---|
[622] | 1161 | |
---|
[623] | 1162 | # ${libIGCM}/libIGCM_sys/IGCM_analyse_rsync_out.awk out_rsync |
---|
[715] | 1163 | # (( status=status+$? )) |
---|
[623] | 1164 | |
---|
[715] | 1165 | if [ ${status} -gt 0 ] ; then |
---|
| 1166 | echo "IGCM_sys_Put_Rest : cp failed error code ${status}" |
---|
[765] | 1167 | [ -f ${1} ] && ls -l ${1} |
---|
[759] | 1168 | [ -f ${2} ] && ls -l ${2} |
---|
| 1169 | [ -f ${2}/${1} ] && ls -l ${2}/${1} |
---|
[623] | 1170 | cat out_rsync |
---|
| 1171 | IGCM_debug_Exit "IGCM_sys_Put_Rest" |
---|
[622] | 1172 | else |
---|
[759] | 1173 | |
---|
| 1174 | if [ X${JobType} = XRUN ] ; then |
---|
| 1175 | [ -f ${2} ] && IGCM_sys_Chmod 444 ${2} |
---|
| 1176 | [ -f ${2}/${1} ] && IGCM_sys_Chmod 444 ${2}/${1} |
---|
| 1177 | fi |
---|
| 1178 | |
---|
[623] | 1179 | \rm out_rsync |
---|
[622] | 1180 | fi |
---|
[623] | 1181 | else |
---|
| 1182 | ( ${DEBUG_debug} ) && echo "DRYRUN mode = " $DRYRUN >> stack |
---|
| 1183 | fi |
---|
| 1184 | IGCM_debug_PopStack "IGCM_sys_Put_Rest" |
---|
[622] | 1185 | } |
---|
| 1186 | |
---|
| 1187 | #D-#================================================== |
---|
[623] | 1188 | #D-function IGCM_sys_PutBuffer_Rest |
---|
| 1189 | #D-* Purpose: Put computied restarts on ${SCRATCHDIR}. |
---|
| 1190 | #D- File and target directory must exist. |
---|
| 1191 | #D-* Examples: |
---|
| 1192 | #D- |
---|
| 1193 | function IGCM_sys_PutBuffer_Rest { |
---|
| 1194 | IGCM_debug_PushStack "IGCM_sys_PutBuffer_Rest" $@ |
---|
| 1195 | if ( $DEBUG_sys ) ; then |
---|
| 1196 | echo "IGCM_sys_PutBuffer_Rest :" $@ |
---|
| 1197 | fi |
---|
| 1198 | if [ $DRYRUN = 0 ]; then |
---|
| 1199 | if [ ! -f ${1} ] ; then |
---|
| 1200 | echo "ERROR : IGCM_sys_PutBuffer_Rest ${1} DOES NOT EXIST ." |
---|
| 1201 | IGCM_debug_Exit "IGCM_sys_PutBuffer_Rest" |
---|
| 1202 | fi |
---|
| 1203 | |
---|
[715] | 1204 | typeset status |
---|
[623] | 1205 | # |
---|
| 1206 | # USUAL WAY |
---|
| 1207 | \cp $1 $2 > out_rsync 2>&1 |
---|
[715] | 1208 | status=$? |
---|
[623] | 1209 | |
---|
[715] | 1210 | if [ ${status} -gt 0 ] ; then |
---|
| 1211 | echo "IGCM_sys_PutBuffer_Rest : error code ${status}" |
---|
[759] | 1212 | [ -f ${2} ] && ls -l ${2} |
---|
| 1213 | [ -f ${2}/${1} ] && ls -l ${2}/${1} |
---|
[623] | 1214 | cat out_rsync |
---|
| 1215 | IGCM_debug_Exit "IGCM_sys_PutBuffer_Rest" |
---|
| 1216 | else |
---|
[759] | 1217 | |
---|
| 1218 | if [ X${JobType} = XRUN ] ; then |
---|
| 1219 | [ -f ${2} ] && IGCM_sys_Chmod 444 ${2} |
---|
| 1220 | [ -f ${2}/${1} ] && IGCM_sys_Chmod 444 ${2}/${1} |
---|
| 1221 | fi |
---|
| 1222 | |
---|
[623] | 1223 | \rm out_rsync |
---|
| 1224 | fi |
---|
| 1225 | else |
---|
| 1226 | ( ${DEBUG_debug} ) && echo "DRYRUN mode = " $DRYRUN >> stack |
---|
| 1227 | fi |
---|
| 1228 | IGCM_debug_PopStack "IGCM_sys_PutBuffer_Rest" |
---|
| 1229 | } |
---|
| 1230 | |
---|
| 1231 | #D-#================================================== |
---|
[801] | 1232 | #D-function IGCM_sys_PrepareTaredRestart |
---|
| 1233 | #D-* Purpose: Prepare tared restart to be access by computing job. Identity here. |
---|
| 1234 | #D-* Examples: |
---|
| 1235 | #D- |
---|
| 1236 | function IGCM_sys_PrepareTaredRestart { |
---|
| 1237 | IGCM_debug_PushStack "IGCM_sys_PrepareTaredRestart" $@ |
---|
[802] | 1238 | if [ $DRYRUN = 0 ]; then |
---|
| 1239 | [ ! -f $( basename $1 ) ] && DEBUG_sys=false IGCM_sys_Get $1 . |
---|
| 1240 | else |
---|
| 1241 | ( ${DEBUG_debug} ) && echo "DRYRUN mode = " $DRYRUN >> stack |
---|
| 1242 | fi |
---|
| 1243 | echo $( basename $1 ) |
---|
[801] | 1244 | IGCM_debug_PopStack "IGCM_sys_PrepareTaredRestart" |
---|
| 1245 | } |
---|
| 1246 | |
---|
| 1247 | #D-#================================================== |
---|
[622] | 1248 | #D-function IGCM_sys_Put_Out |
---|
[623] | 1249 | #D-* Purpose: Copy a file on ${ARCHIVE} after having chmod it in readonly |
---|
[622] | 1250 | #D-* Examples: |
---|
| 1251 | #D- |
---|
| 1252 | function IGCM_sys_Put_Out { |
---|
[623] | 1253 | IGCM_debug_PushStack "IGCM_sys_Put_Out" $@ |
---|
| 1254 | if ( $DEBUG_sys ) ; then |
---|
| 1255 | echo "IGCM_sys_Put_Out :" $@ |
---|
| 1256 | fi |
---|
[667] | 1257 | |
---|
[711] | 1258 | typeset NB_ESSAI DELAI status i exist skip |
---|
[667] | 1259 | |
---|
| 1260 | # number of tentative |
---|
[668] | 1261 | NB_ESSAI=3 |
---|
[667] | 1262 | # time delay between tentative |
---|
[668] | 1263 | DELAI=2 |
---|
[667] | 1264 | |
---|
[623] | 1265 | if [ $DRYRUN = 0 ]; then |
---|
| 1266 | if [ ! -f ${1} ] ; then |
---|
| 1267 | echo "WARNING : IGCM_sys_Put_Out ${1} DOES NOT EXIST ." |
---|
| 1268 | IGCM_debug_PopStack "IGCM_sys_Put_Out" |
---|
| 1269 | return 1 |
---|
[622] | 1270 | fi |
---|
[623] | 1271 | # |
---|
| 1272 | IGCM_sys_MkdirArchive $( dirname $2 ) |
---|
| 1273 | # |
---|
[622] | 1274 | |
---|
[623] | 1275 | #===================================================== |
---|
| 1276 | # COMMENT OUT DOUBLE COPY ON SCRATCHDIR |
---|
| 1277 | #===================================================== |
---|
[622] | 1278 | |
---|
[623] | 1279 | #echo ${2} | grep "${R_OUT}" > /dev/null 2>&1 |
---|
| 1280 | #if [ $? -eq 0 ] ; then |
---|
| 1281 | # typeset WORKPATH FILEPATH |
---|
| 1282 | # WORKPATH=$( dirname $2 | sed -e "s|${R_OUT}|${R_BUF}|" ) |
---|
| 1283 | # IGCM_sys_MkdirWork ${WORKPATH} |
---|
| 1284 | # FILEPATH=${WORKPATH}/$( basename $2 ) |
---|
| 1285 | # # |
---|
| 1286 | # IGCM_sys_Cp ${1} ${FILEPATH} |
---|
| 1287 | #fi |
---|
[622] | 1288 | |
---|
[711] | 1289 | exist=false |
---|
| 1290 | skip=false |
---|
| 1291 | if [ -f $2 ] ; then |
---|
| 1292 | IGCM_debug_Print 1 "$2 already exist" |
---|
| 1293 | #dmget $2 |
---|
| 1294 | ccc_hsm get $2 |
---|
| 1295 | exist=true |
---|
| 1296 | if [ "X$( diff $1 $2 )" = X ] ; then |
---|
| 1297 | IGCM_debug_Print 2 "$1 and $2 are the same file, we skip the copy" |
---|
| 1298 | skip=true |
---|
[667] | 1299 | else |
---|
[711] | 1300 | IGCM_debug_Print 2 "$1 and $2 are not the same file, we force the copy" |
---|
| 1301 | skip=false |
---|
[667] | 1302 | fi |
---|
[711] | 1303 | fi |
---|
| 1304 | # |
---|
| 1305 | if ( [ X${exist} = Xtrue ] && [ X${skip} = Xfalse ] ) ; then |
---|
| 1306 | IGCM_sys_Chmod u+w $2 |
---|
| 1307 | fi |
---|
[622] | 1308 | |
---|
[711] | 1309 | if [ X${skip} = Xfalse ] ; then |
---|
[719] | 1310 | i=0 |
---|
[711] | 1311 | while [ $i -lt $NB_ESSAI ] ; do |
---|
| 1312 | # USUAL WAY |
---|
| 1313 | \cp $1 $2 > out_rsync 2>&1 |
---|
| 1314 | status=$? |
---|
| 1315 | if [ ${status} -gt 0 ]; then |
---|
[713] | 1316 | IGCM_debug_Print 2 "IGCM_sys_Put_Out : cp failed error code ${status} ${i}/${NB_ESSAI}" |
---|
[711] | 1317 | IGCM_debug_Print 2 "IGCM_sys_Put_Out : sleep ${DELAI} seconds and try again." |
---|
[765] | 1318 | [ -f ${1} ] && ls -l ${1} |
---|
[759] | 1319 | [ -f ${2} ] && ls -l ${2} |
---|
| 1320 | [ -f ${2}/${1} ] && ls -l ${2}/${1} |
---|
[711] | 1321 | sleep $DELAI |
---|
| 1322 | else |
---|
| 1323 | break |
---|
| 1324 | fi |
---|
| 1325 | (( i = i + 1 )) |
---|
| 1326 | done |
---|
| 1327 | fi |
---|
| 1328 | |
---|
[623] | 1329 | # #RSYNC WITH NETWORK SSH CALL |
---|
| 1330 | # echo ${RSYNC} ${RSYNC_opt} -e ssh ${RUN_DIR}/$1 ${STOREHOST}:${2} > out_rsync 2>&1 |
---|
| 1331 | # ${RSYNC} ${RSYNC_opt} -e ssh ${RUN_DIR}/$1 ${STOREHOST}:${2} >> out_rsync 2>&1 |
---|
[622] | 1332 | |
---|
[623] | 1333 | # #RSYNC WITH NFS USE |
---|
| 1334 | # echo ${RSYNC} ${RSYNC_opt} ${RUN_DIR}/$1 ${2} > out_rsync 2>&1 |
---|
| 1335 | # ${RSYNC} ${RSYNC_opt} ${RUN_DIR}/$1 ${2} >> out_rsync 2>&1 |
---|
[622] | 1336 | |
---|
[711] | 1337 | # status=$? |
---|
| 1338 | # IGCM_sys_Rsync_out $status |
---|
[622] | 1339 | |
---|
[623] | 1340 | # ${libIGCM}/libIGCM_sys/IGCM_analyse_rsync_out.awk out_rsync |
---|
[711] | 1341 | # (( status=status+$? )) |
---|
[622] | 1342 | |
---|
[711] | 1343 | if [ ${status} -gt 0 ] ; then |
---|
[623] | 1344 | echo "IGCM_sys_Put_Out : error." |
---|
[765] | 1345 | [ -f ${1} ] && ls -l ${1} |
---|
[759] | 1346 | [ -f ${2} ] && ls -l ${2} |
---|
| 1347 | [ -f ${2}/${1} ] && ls -l ${2}/${1} |
---|
[623] | 1348 | cat out_rsync |
---|
| 1349 | IGCM_debug_Exit "IGCM_sys_Put_Out" |
---|
[622] | 1350 | else |
---|
[759] | 1351 | |
---|
| 1352 | if [ X${JobType} = XRUN ] ; then |
---|
| 1353 | if [ X${3} = X ] ; then |
---|
| 1354 | [ -f ${2} ] && IGCM_sys_Chmod 444 ${2} |
---|
| 1355 | [ -f ${2}/${1} ] && IGCM_sys_Chmod 444 ${2}/${1} |
---|
| 1356 | fi |
---|
| 1357 | fi |
---|
| 1358 | |
---|
[623] | 1359 | \rm out_rsync |
---|
[622] | 1360 | fi |
---|
[623] | 1361 | else |
---|
| 1362 | ( ${DEBUG_debug} ) && echo "DRYRUN mode = " $DRYRUN >> stack |
---|
| 1363 | fi |
---|
| 1364 | IGCM_debug_PopStack "IGCM_sys_Put_Out" |
---|
| 1365 | return 0 |
---|
[622] | 1366 | } |
---|
| 1367 | |
---|
| 1368 | #D-#================================================== |
---|
[623] | 1369 | #D-function IGCM_sys_PutBuffer_Out |
---|
| 1370 | #D-* Purpose: Copy a file on ${SCRATCHDIR} after having chmod it in readonly |
---|
| 1371 | #D-* Examples: |
---|
| 1372 | #D- |
---|
| 1373 | function IGCM_sys_PutBuffer_Out { |
---|
| 1374 | IGCM_debug_PushStack "IGCM_sys_PutBuffer_Out" $@ |
---|
| 1375 | if ( $DEBUG_sys ) ; then |
---|
| 1376 | echo "IGCM_sys_PutBuffer_Out :" $@ |
---|
| 1377 | fi |
---|
[711] | 1378 | |
---|
[773] | 1379 | typeset NB_ESSAI DELAI status i exist skip |
---|
[711] | 1380 | |
---|
| 1381 | # number of tentative |
---|
| 1382 | NB_ESSAI=3 |
---|
| 1383 | # time delay between tentative |
---|
| 1384 | DELAI=2 |
---|
| 1385 | |
---|
[623] | 1386 | if [ $DRYRUN = 0 ]; then |
---|
| 1387 | if [ ! -f ${1} ] ; then |
---|
| 1388 | echo "WARNING : IGCM_sys_PutBuffer_Out ${1} DOES NOT EXIST ." |
---|
| 1389 | IGCM_debug_PopStack "IGCM_sys_PutBuffer_Out" |
---|
| 1390 | return 1 |
---|
| 1391 | fi |
---|
| 1392 | # |
---|
| 1393 | IGCM_sys_Mkdir $( dirname $2 ) |
---|
| 1394 | # |
---|
| 1395 | |
---|
[711] | 1396 | exist=false |
---|
| 1397 | skip=false |
---|
| 1398 | if [ -f $2 ] ; then |
---|
| 1399 | IGCM_debug_Print 1 "$2 already exist" |
---|
| 1400 | exist=true |
---|
| 1401 | if [ "X$( diff $1 $2 )" = X ] ; then |
---|
| 1402 | IGCM_debug_Print 2 "$1 and $2 are the same file, we skip the copy" |
---|
| 1403 | skip=true |
---|
| 1404 | else |
---|
| 1405 | IGCM_debug_Print 2 "$1 and $2 are not the same file, we force the copy" |
---|
| 1406 | skip=false |
---|
| 1407 | fi |
---|
| 1408 | fi |
---|
[623] | 1409 | # |
---|
[711] | 1410 | if ( [ X${exist} = Xtrue ] && [ X${skip} = Xfalse ] ) ; then |
---|
| 1411 | IGCM_sys_Chmod u+w $2 |
---|
| 1412 | fi |
---|
[623] | 1413 | |
---|
[711] | 1414 | if [ X${skip} = Xfalse ] ; then |
---|
| 1415 | i=0 |
---|
| 1416 | while [ $i -lt $NB_ESSAI ] ; do |
---|
| 1417 | # USUAL WAY |
---|
| 1418 | \cp $1 $2 > out_rsync 2>&1 |
---|
| 1419 | status=$? |
---|
| 1420 | if [ ${status} -gt 0 ]; then |
---|
[713] | 1421 | IGCM_debug_Print 2 "IGCM_sys_PutBuffer_Out : cp failed error code ${status} ${i}/${NB_ESSAI}" |
---|
[711] | 1422 | IGCM_debug_Print 2 "IGCM_sys_PutBuffer_Out : sleep ${DELAI} seconds and try again." |
---|
[759] | 1423 | [ -f ${2} ] && ls -l ${2} |
---|
| 1424 | [ -f ${2}/${1} ] && ls -l ${2}/${1} |
---|
[711] | 1425 | sleep $DELAI |
---|
| 1426 | else |
---|
| 1427 | break |
---|
| 1428 | fi |
---|
| 1429 | (( i = i + 1 )) |
---|
| 1430 | done |
---|
| 1431 | fi |
---|
| 1432 | |
---|
| 1433 | if [ ${status} -gt 0 ] ; then |
---|
[623] | 1434 | echo "IGCM_sys_PutBuffer_Out : error." |
---|
[759] | 1435 | [ -f ${2} ] && ls -l ${2} |
---|
| 1436 | [ -f ${2}/${1} ] && ls -l ${2}/${1} |
---|
[623] | 1437 | cat out_rsync |
---|
| 1438 | IGCM_debug_Exit "IGCM_sys_PutBuffer_Out" |
---|
| 1439 | else |
---|
[759] | 1440 | |
---|
| 1441 | if [ X${JobType} = XRUN ] ; then |
---|
| 1442 | if [ X${3} = X ] ; then |
---|
| 1443 | [ -f ${2} ] && IGCM_sys_Chmod 444 ${2} |
---|
| 1444 | [ -f ${2}/${1} ] && IGCM_sys_Chmod 444 ${2}/${1} |
---|
| 1445 | fi |
---|
| 1446 | fi |
---|
| 1447 | |
---|
[623] | 1448 | \rm out_rsync |
---|
| 1449 | fi |
---|
| 1450 | else |
---|
| 1451 | ( ${DEBUG_debug} ) && echo "DRYRUN mode = " $DRYRUN >> stack |
---|
| 1452 | fi |
---|
| 1453 | IGCM_debug_PopStack "IGCM_sys_PutBuffer_Out" |
---|
| 1454 | return 0 |
---|
| 1455 | } |
---|
| 1456 | |
---|
| 1457 | #D-#================================================== |
---|
[622] | 1458 | #D-function IGCM_sys_Get |
---|
| 1459 | #D-* Purpose: Get a file from ${ARCHIVE} |
---|
| 1460 | #D-* Examples: IGCM_sys_Get myfile /destpath/myfile_with_PREFIX |
---|
| 1461 | #D- IGCM_sys_Get /l Array_contain_myfiles /destpath/ |
---|
| 1462 | function IGCM_sys_Get { |
---|
[623] | 1463 | IGCM_debug_PushStack "IGCM_sys_Get" $@ |
---|
[622] | 1464 | |
---|
[773] | 1465 | typeset DEST dm_liste target file_work |
---|
[667] | 1466 | typeset NB_ESSAI DELAI status i |
---|
[622] | 1467 | |
---|
[623] | 1468 | if ( $DEBUG_sys ) ; then |
---|
| 1469 | echo "IGCM_sys_Get :" $@ |
---|
| 1470 | fi |
---|
[667] | 1471 | |
---|
| 1472 | # number of tentative |
---|
[668] | 1473 | NB_ESSAI=3 |
---|
[667] | 1474 | # time delay between tentative |
---|
[668] | 1475 | DELAI=2 |
---|
[667] | 1476 | |
---|
[623] | 1477 | if [ $DRYRUN -le 2 ]; then |
---|
| 1478 | if [ X${1} = X'/l' ] ; then |
---|
| 1479 | # test if the first file is present in the old computation : |
---|
| 1480 | eval set +A dm_liste \${${2}} |
---|
| 1481 | else |
---|
| 1482 | eval set +A dm_liste ${1} |
---|
[622] | 1483 | fi |
---|
[623] | 1484 | eval DEST=\${${#}} |
---|
[622] | 1485 | |
---|
[623] | 1486 | #===================================================== |
---|
| 1487 | # COMMENT OUT DOUBLE COPY ON SCRATCHDIR |
---|
| 1488 | #===================================================== |
---|
[622] | 1489 | |
---|
[623] | 1490 | # Is it an R_OUT file (not R_IN) ? |
---|
| 1491 | #echo ${dm_liste[0]} | grep "${R_OUT}" > /dev/null 2>&1 |
---|
| 1492 | #if [ $? -eq 0 ] ; then |
---|
[785] | 1493 | # # Yes ? then we try to get it in SCRATCHDIR |
---|
| 1494 | # set +A file_work $( echo ${dm_liste[*]} | sed -e "s|${R_OUT}|${R_BUF}|g" ) |
---|
| 1495 | # if [ -f ${file_work[0]} ] ; then |
---|
| 1496 | # IGCM_sys_Cp ${file_work[*]} ${DEST} |
---|
| 1497 | # IGCM_debug_PopStack "IGCM_sys_Get" |
---|
| 1498 | # return |
---|
| 1499 | # fi |
---|
[623] | 1500 | #fi |
---|
[622] | 1501 | |
---|
[623] | 1502 | ccc_hsm get ${dm_liste[*]} > out_rsync 2>&1 |
---|
[715] | 1503 | status=$? |
---|
| 1504 | if [ ${status} -gt 0 ] ; then |
---|
| 1505 | echo "WARNING IGCM_sys_Get : error code ${status}" |
---|
[623] | 1506 | cat out_rsync |
---|
| 1507 | echo "WARNING IGCM_sys_Get : will stop later if the cp fails." |
---|
| 1508 | fi |
---|
[622] | 1509 | |
---|
[715] | 1510 | #if [ ${status} -gt 0 ] ; then |
---|
[785] | 1511 | # if [ ! "X$( grep "Lost dmusrcmd connection" out_rsync )" = "X" ] ; then |
---|
| 1512 | # cat out_rsync |
---|
| 1513 | # echo "WARNING IGCM_sys_Get : Lost dmusrcmd connection : " |
---|
| 1514 | # sleep 30 |
---|
| 1515 | # echo "We try another time" |
---|
| 1516 | ## dmget ${dm_liste[*]} > out_rsync 2>&1 |
---|
| 1517 | # ccc_hsm get ${dm_liste[*]} > out_rsync 2>&1 |
---|
| 1518 | # status=$? |
---|
| 1519 | # if [ ${status} -gt 0 ] ; then |
---|
| 1520 | # echo "ERROR IGCM_sys_Get : again demigration error :" |
---|
| 1521 | # cat out_rsync |
---|
| 1522 | # IGCM_debug_Exit "IGCM_sys_Get" |
---|
[623] | 1523 | # fi |
---|
[785] | 1524 | # else |
---|
| 1525 | # echo "ERROR IGCM_sys_Get : demigration error :" |
---|
| 1526 | # cat out_rsync |
---|
| 1527 | # IGCM_debug_Exit "IGCM_sys_Get" |
---|
| 1528 | # fi |
---|
[623] | 1529 | #fi |
---|
[622] | 1530 | |
---|
[719] | 1531 | # #RSYNC WITH NETWORK SSH CALL |
---|
| 1532 | # echo ${RSYNC} ${RSYNC_opt} -e ssh ${STOREHOST}:"${dm_liste}" ${STOREHOST}:${RUN_DIR}/${DEST} > out_rsync 2>&1 |
---|
| 1533 | # ${RSYNC} ${RSYNC_opt} -e ssh ${STOREHOST}:"${dm_liste}" ${STOREHOST}:${RUN_DIR}/${DEST} >> out_rsync 2>&1 |
---|
| 1534 | |
---|
| 1535 | # #RSYNC WITH NFS USE |
---|
| 1536 | # echo ${RSYNC} ${RSYNC_opt} ${dm_liste} ${RUN_DIR}/${DEST} > out_rsync 2>&1 |
---|
| 1537 | # ${RSYNC} ${RSYNC_opt} ${dm_liste} ${RUN_DIR}/${DEST} >> out_rsync 2>&1 |
---|
| 1538 | |
---|
| 1539 | # status=$? |
---|
| 1540 | # IGCM_sys_Rsync_out $status |
---|
| 1541 | |
---|
| 1542 | # ${libIGCM}/libIGCM_sys/IGCM_analyse_rsync_out.awk out_rsync |
---|
| 1543 | # (( status=status+$? )) |
---|
| 1544 | |
---|
[623] | 1545 | #USUAL WAY |
---|
| 1546 | if [ X${1} = X'/l' ] ; then |
---|
| 1547 | for target in ${dm_liste[*]} ; do |
---|
| 1548 | local_file=$( basename ${target} ) |
---|
[668] | 1549 | # test if the target file is present before the loop |
---|
| 1550 | IGCM_sys_TestFileArchive ${target} |
---|
[715] | 1551 | status=$? |
---|
| 1552 | if [ ${status} -gt 0 ] ; then |
---|
[701] | 1553 | echo "IGCM_sys_Get, ERROR : regular file ${target} DOES NOT EXIST ." |
---|
[668] | 1554 | IGCM_debug_Exit "IGCM_sys_Get" |
---|
| 1555 | else |
---|
[719] | 1556 | i=0 |
---|
[668] | 1557 | while [ $i -lt $NB_ESSAI ] ; do |
---|
| 1558 | \cp ${target} ${DEST}/${local_file} >> out_rsync 2>&1 |
---|
| 1559 | status=$? |
---|
| 1560 | if [ ${status} -gt 0 ]; then |
---|
[713] | 1561 | IGCM_debug_Print 2 "IGCM_sys_Get : cp failed error code ${status} ${i}/${NB_ESSAI}" |
---|
[676] | 1562 | IGCM_debug_Print 2 "IGCM_sys_Get : sleep ${DELAI} seconds and try again." |
---|
| 1563 | sleep $DELAI |
---|
[668] | 1564 | else |
---|
[676] | 1565 | break |
---|
[668] | 1566 | fi |
---|
| 1567 | (( i = i + 1 )) |
---|
| 1568 | done |
---|
[719] | 1569 | if [ ${status} -gt 0 ] ; then |
---|
| 1570 | echo "IGCM_sys_Get : error" |
---|
| 1571 | cat out_rsync |
---|
| 1572 | \rm out_rsync |
---|
| 1573 | IGCM_debug_Exit "IGCM_sys_Get" |
---|
| 1574 | else |
---|
| 1575 | \rm out_rsync |
---|
| 1576 | fi |
---|
[668] | 1577 | fi |
---|
[623] | 1578 | done |
---|
| 1579 | else |
---|
[719] | 1580 | i=0 |
---|
| 1581 | while [ $i -lt $NB_ESSAI ] ; do |
---|
| 1582 | \cp ${dm_liste} ${DEST} >> out_rsync 2>&1 |
---|
| 1583 | status=$? |
---|
| 1584 | if [ ${status} -gt 0 ]; then |
---|
| 1585 | IGCM_debug_Print 2 "IGCM_sys_Get : cp failed error code ${status} ${i}/${NB_ESSAI}" |
---|
| 1586 | IGCM_debug_Print 2 "IGCM_sys_Get : sleep ${DELAI} seconds and try again." |
---|
| 1587 | sleep $DELAI |
---|
| 1588 | else |
---|
| 1589 | break |
---|
| 1590 | fi |
---|
| 1591 | (( i = i + 1 )) |
---|
| 1592 | done |
---|
| 1593 | if [ ${status} -gt 0 ] ; then |
---|
| 1594 | echo "IGCM_sys_Get : error" |
---|
| 1595 | cat out_rsync |
---|
| 1596 | \rm out_rsync |
---|
| 1597 | IGCM_debug_Exit "IGCM_sys_Get" |
---|
| 1598 | else |
---|
| 1599 | \rm out_rsync |
---|
| 1600 | fi |
---|
[623] | 1601 | fi |
---|
| 1602 | else |
---|
| 1603 | ( ${DEBUG_debug} ) && echo "DRYRUN mode = " $DRYRUN >> stack |
---|
| 1604 | fi |
---|
| 1605 | IGCM_debug_PopStack "IGCM_sys_Get" |
---|
| 1606 | } |
---|
[622] | 1607 | |
---|
[623] | 1608 | #D-#================================================== |
---|
| 1609 | #D-function IGCM_sys_GetBuffer |
---|
| 1610 | #D-* Purpose: Get a file from ${SCRATCHDIR} |
---|
| 1611 | #D-* Examples: IGCM_sys_GetBuffer myfile /destpath/myfile_with_PREFIX |
---|
| 1612 | #D- IGCM_sys_GetBuffer /l Array_contain_myfiles /destpath/ |
---|
| 1613 | function IGCM_sys_GetBuffer { |
---|
| 1614 | IGCM_debug_PushStack "IGCM_sys_GetBuffer" $@ |
---|
| 1615 | |
---|
[773] | 1616 | typeset DEST buf_liste target file_work |
---|
[719] | 1617 | typeset NB_ESSAI DELAI status i |
---|
[623] | 1618 | |
---|
| 1619 | if ( $DEBUG_sys ) ; then |
---|
| 1620 | echo "IGCM_sys_GetBuffer :" $@ |
---|
| 1621 | fi |
---|
[719] | 1622 | |
---|
| 1623 | # number of tentative |
---|
| 1624 | NB_ESSAI=3 |
---|
| 1625 | # time delay between tentative |
---|
| 1626 | DELAI=2 |
---|
| 1627 | |
---|
[623] | 1628 | if [ $DRYRUN -le 2 ]; then |
---|
| 1629 | if [ X${1} = X'/l' ] ; then |
---|
| 1630 | # test if the first file is present in the old computation : |
---|
| 1631 | eval set +A buf_liste \${${2}} |
---|
[622] | 1632 | else |
---|
[623] | 1633 | eval set +A buf_liste ${1} |
---|
[622] | 1634 | fi |
---|
[623] | 1635 | eval DEST=\${${#}} |
---|
| 1636 | |
---|
| 1637 | #USUAL WAY |
---|
| 1638 | if [ X${1} = X'/l' ] ; then |
---|
| 1639 | for target in ${buf_liste[*]} ; do |
---|
| 1640 | local_file=$( basename ${target} ) |
---|
[719] | 1641 | i=0 |
---|
| 1642 | while [ $i -lt $NB_ESSAI ] ; do |
---|
| 1643 | \cp ${target} ${DEST}/${local_file} >> out_rsync 2>&1 |
---|
| 1644 | status=$? |
---|
| 1645 | if [ ${status} -gt 0 ]; then |
---|
| 1646 | IGCM_debug_Print 2 "IGCM_sys_GetBuffer : cp failed error code ${status} ${i}/${NB_ESSAI}" |
---|
| 1647 | IGCM_debug_Print 2 "IGCM_sys_GetBuffer : sleep ${DELAI} seconds and try again." |
---|
| 1648 | sleep $DELAI |
---|
| 1649 | else |
---|
| 1650 | break |
---|
| 1651 | fi |
---|
| 1652 | (( i = i + 1 )) |
---|
| 1653 | done |
---|
| 1654 | if [ ${status} -gt 0 ] ; then |
---|
| 1655 | echo "IGCM_sys_Get : error" |
---|
| 1656 | cat out_rsync |
---|
| 1657 | \rm out_rsync |
---|
| 1658 | IGCM_debug_Exit "IGCM_sys_GetBuffer" |
---|
| 1659 | else |
---|
| 1660 | \rm out_rsync |
---|
| 1661 | fi |
---|
[623] | 1662 | done |
---|
| 1663 | else |
---|
[719] | 1664 | i=0 |
---|
| 1665 | while [ $i -lt $NB_ESSAI ] ; do |
---|
| 1666 | \cp ${buf_liste} ${DEST} >> out_rsync 2>&1 |
---|
| 1667 | status=$? |
---|
| 1668 | if [ ${status} -gt 0 ]; then |
---|
| 1669 | IGCM_debug_Print 2 "IGCM_sys_GetBuffer : cp failed error code ${status} ${i}/${NB_ESSAI}" |
---|
| 1670 | IGCM_debug_Print 2 "IGCM_sys_GetBuffer : sleep ${DELAI} seconds and try again." |
---|
| 1671 | sleep $DELAI |
---|
| 1672 | else |
---|
| 1673 | break |
---|
| 1674 | fi |
---|
| 1675 | (( i = i + 1 )) |
---|
| 1676 | done |
---|
| 1677 | if [ ${status} -gt 0 ] ; then |
---|
| 1678 | echo "IGCM_sys_Get : error" |
---|
| 1679 | cat out_rsync |
---|
| 1680 | \rm out_rsync |
---|
| 1681 | IGCM_debug_Exit "IGCM_sys_GetBuffer" |
---|
| 1682 | else |
---|
| 1683 | \rm out_rsync |
---|
| 1684 | fi |
---|
[623] | 1685 | fi |
---|
| 1686 | else |
---|
| 1687 | ( ${DEBUG_debug} ) && echo "DRYRUN mode = " $DRYRUN >> stack |
---|
| 1688 | fi |
---|
| 1689 | IGCM_debug_PopStack "IGCM_sys_GetBuffer" |
---|
[622] | 1690 | } |
---|
| 1691 | |
---|
| 1692 | #D-#================================================== |
---|
| 1693 | #D-function IGCM_sys_GetDate_FichWork |
---|
| 1694 | #D-* Purpose: donne la date filesys d'un fichier sur le filesystem WORK |
---|
| 1695 | #D-* Examples: |
---|
| 1696 | #D- |
---|
| 1697 | function IGCM_sys_GetDate_FichWork { |
---|
[623] | 1698 | IGCM_debug_PushStack "IGCM_sys_FichWork" $@ |
---|
| 1699 | if ( $DEBUG_sys ) ; then |
---|
| 1700 | echo "IGCM_sys_GetDate_FichWork :" $@ |
---|
| 1701 | fi |
---|
| 1702 | typeset dateF |
---|
| 1703 | set +A dateF -- $( ls -l --full-time --time-style='+%Y%m%d%H%M%S' ${1} ) |
---|
| 1704 | eval ${2}=${dateF[5]} |
---|
| 1705 | |
---|
[773] | 1706 | # donne la date filesys d'un fichier sur la machine work |
---|
[623] | 1707 | IGCM_debug_PopStack "IGCM_sys_FichWork" |
---|
[622] | 1708 | } |
---|
| 1709 | |
---|
| 1710 | #D-#================================================== |
---|
| 1711 | #D-function IGCM_sys_GetDate_FichArchive |
---|
[623] | 1712 | #D-* Purpose: donne la date filesys d'un fichier sur le filesystem ARCHIVE |
---|
[622] | 1713 | #D-* Examples: |
---|
| 1714 | #D- |
---|
| 1715 | function IGCM_sys_GetDate_FichArchive { |
---|
[623] | 1716 | IGCM_debug_PushStack "IGCM_sys_FichArchive" $@ |
---|
| 1717 | if ( $DEBUG_sys ) ; then |
---|
| 1718 | echo "IGCM_sys_GetDate_FichArchive :" $@ |
---|
| 1719 | fi |
---|
| 1720 | typeset dateF |
---|
| 1721 | set +A dateF -- $( ls -l --full-time --time-style='+%Y%m%d%H%M%S' ${1} ) |
---|
| 1722 | eval ${2}=${dateF[5]} |
---|
| 1723 | |
---|
| 1724 | IGCM_debug_PopStack "IGCM_sys_FichArchive" |
---|
| 1725 | } |
---|
| 1726 | |
---|
| 1727 | #D-#================================================== |
---|
| 1728 | #D-function IGCM_sys_Dods_Rm |
---|
| 1729 | #D-* Purpose: DO NOTHING ! Put ${ARCHIVE} files on DODS internet protocole. |
---|
| 1730 | #D-* Examples: |
---|
| 1731 | #D- |
---|
| 1732 | function IGCM_sys_Dods_Rm { |
---|
| 1733 | if ( $DEBUG_sys ) ; then |
---|
| 1734 | echo "IGCM_sys_Dods_Rm :" $@ |
---|
| 1735 | fi |
---|
[715] | 1736 | typeset status |
---|
[623] | 1737 | if [ $DRYRUN = 0 ]; then |
---|
| 1738 | |
---|
| 1739 | # if [ ! -d /dmnfs/cont003/dods/public/${LOGIN}/${R_DODS}/${1} ] ; then |
---|
| 1740 | # echo "WARNING : IGCM_sys_Dods_Rm /dmnfs/cont003/dods/public/${LOGIN}/${R_DODS}/${1} DOES NOT EXIST ." |
---|
| 1741 | # echo "Nothing has been done." |
---|
| 1742 | # return |
---|
| 1743 | # fi |
---|
| 1744 | |
---|
[649] | 1745 | /ccc/cont003/home/dsm/p86ipsl/bin/dods_rm public/${LOGIN}/${R_DODS}/${1} # > out_dods_rm 2>&1 |
---|
[715] | 1746 | status=$? |
---|
[623] | 1747 | |
---|
[785] | 1748 | # if [ ${status} -gt 0 ] ; then |
---|
| 1749 | # echo "IGCM_sys_Dods_Rm : error." |
---|
| 1750 | # cat out_dods_rm |
---|
| 1751 | # IGCM_debug_Exit "IGCM_sys_Dods_Rm" |
---|
| 1752 | # else |
---|
| 1753 | # rm out_dods_rm |
---|
| 1754 | # fi |
---|
[623] | 1755 | |
---|
| 1756 | else |
---|
| 1757 | ( ${DEBUG_debug} ) && echo "DRYRUN mode = " $DRYRUN >> stack |
---|
| 1758 | fi |
---|
[715] | 1759 | return $status |
---|
[623] | 1760 | } |
---|
| 1761 | |
---|
| 1762 | #D-#================================================== |
---|
| 1763 | #D-function IGCM_sys_Dods_Cp |
---|
| 1764 | #D-* Purpose: Copy $(ARCHIVE) files on DODS internet protocole. |
---|
| 1765 | #D-* Examples: |
---|
| 1766 | #D- |
---|
| 1767 | function IGCM_sys_Dods_Cp { |
---|
| 1768 | if ( $DEBUG_sys ) ; then |
---|
| 1769 | echo "IGCM_sys_Dods_Cp :" $@ |
---|
| 1770 | fi |
---|
[715] | 1771 | typeset status |
---|
[623] | 1772 | if [ $DRYRUN = 0 ]; then |
---|
| 1773 | |
---|
| 1774 | # if [ ! -d ${R_SAVE}/${1} ] ; then |
---|
| 1775 | # echo "WARNING : IGCM_sys_Dods_Cp ${R_SAVE}/${1} DOES NOT EXIST ." |
---|
| 1776 | # echo "Nothing has been done." |
---|
| 1777 | # return |
---|
| 1778 | # fi |
---|
| 1779 | |
---|
[649] | 1780 | /ccc/cont003/home/dsm/p86ipsl/bin/dods_cp ${1} public/${LOGIN}/${R_DODS} # > out_dods_cp 2>&1 |
---|
[715] | 1781 | status=$? |
---|
[623] | 1782 | |
---|
[715] | 1783 | # if [ ${status} -gt 0 ] ; then |
---|
[623] | 1784 | # echo "IGCM_sys_Dods_Cp : error." |
---|
| 1785 | # cat out_dods_cp |
---|
| 1786 | # IGCM_debug_Exit "IGCM_sys_Dods_Cp" |
---|
| 1787 | # else |
---|
| 1788 | # rm out_dods_cp |
---|
| 1789 | # fi |
---|
| 1790 | |
---|
| 1791 | else |
---|
| 1792 | ( ${DEBUG_debug} ) && echo "DRYRUN mode = " $DRYRUN >> stack |
---|
| 1793 | fi |
---|
[715] | 1794 | return $status |
---|
[623] | 1795 | } |
---|
| 1796 | |
---|
| 1797 | #D-#================================================== |
---|
| 1798 | #D-function IGCM_sys_Put_Dods |
---|
| 1799 | #D-* Purpose: Put $(ARCHIVE) files on DODS internet protocole. |
---|
| 1800 | #D-* Examples: |
---|
| 1801 | #D- |
---|
| 1802 | function IGCM_sys_Put_Dods { |
---|
| 1803 | IGCM_debug_PushStack "IGCM_sys_Put_Dods" $@ |
---|
| 1804 | if ( $DEBUG_sys ) ; then |
---|
| 1805 | echo "IGCM_sys_Put_Dods :" $@ |
---|
| 1806 | fi |
---|
[711] | 1807 | #set -vx |
---|
[715] | 1808 | typeset status |
---|
[623] | 1809 | if [ $DRYRUN = 0 ]; then |
---|
| 1810 | if ( [ ! -d ${R_SAVE}/${1} ] && [ ! -d ${R_FIGR}/${1} ] ) ; then |
---|
| 1811 | echo "WARNING IGCM_sys_Put_Dods : None of the following directories exist. Exactly one should." |
---|
| 1812 | echo "WARNING IGCM_sys_Put_Dods : ${R_SAVE}/${1} DOES NOT EXIST." |
---|
| 1813 | echo "WARNING IGCM_sys_Put_Dods : ${R_FIGR}/${1} DOES NOT EXIST." |
---|
| 1814 | IGCM_debug_PopStack "IGCM_sys_Put_Dods" |
---|
| 1815 | return |
---|
[622] | 1816 | fi |
---|
[623] | 1817 | |
---|
| 1818 | if ( [ -d ${R_SAVE}/${1} ] && [ -d ${R_FIGR}/${1} ] ) ; then |
---|
| 1819 | echo "WARNING IGCM_sys_Put_Dods : Both of the following directories exist. Exactly one should." |
---|
| 1820 | echo "WARNING IGCM_sys_Put_Dods : ${R_SAVE}/${1} EXISTS." |
---|
| 1821 | echo "WARNING IGCM_sys_Put_Dods : ${R_FIGR}/${1} EXISTS." |
---|
| 1822 | IGCM_debug_PopStack "IGCM_sys_Put_Dods" |
---|
| 1823 | return |
---|
| 1824 | fi |
---|
| 1825 | # |
---|
| 1826 | if [ -d ${R_SAVE}/${1} ] ; then |
---|
| 1827 | cd ${R_SAVE} |
---|
| 1828 | elif [ -d ${R_FIGR}/${1} ] ; then |
---|
| 1829 | cd ${R_FIGR} |
---|
| 1830 | fi |
---|
| 1831 | |
---|
| 1832 | IGCM_sys_Dods_Rm ${1} |
---|
| 1833 | IGCM_sys_Dods_Cp ${1} |
---|
[715] | 1834 | status=0 |
---|
[623] | 1835 | |
---|
[715] | 1836 | if [ ${status} -gt 0 ] ; then |
---|
[623] | 1837 | echo "IGCM_sys_Put_Dods : error." |
---|
| 1838 | IGCM_debug_Exit "IGCM_sys_Put_Dods" |
---|
| 1839 | fi |
---|
| 1840 | else |
---|
| 1841 | ( ${DEBUG_debug} ) && echo "DRYRUN mode = " $DRYRUN >> stack |
---|
| 1842 | fi |
---|
| 1843 | IGCM_debug_PopStack "IGCM_sys_Put_Dods" |
---|
[622] | 1844 | } |
---|
| 1845 | |
---|
| 1846 | ############################################################## |
---|
| 1847 | # REBUILD OPERATOR |
---|
| 1848 | |
---|
| 1849 | function IGCM_sys_rebuild { |
---|
[623] | 1850 | IGCM_debug_PushStack "IGCM_sys_rebuild" -- $@ |
---|
| 1851 | if ( $DEBUG_sys ) ; then |
---|
| 1852 | echo "IGCM_sys_rebuild :" $@ |
---|
| 1853 | fi |
---|
[716] | 1854 | |
---|
[734] | 1855 | typeset NB_ESSAI DELAI status i firstArg |
---|
[716] | 1856 | # number of tentative |
---|
| 1857 | NB_ESSAI=3 |
---|
| 1858 | # time delay between tentative |
---|
| 1859 | DELAI=2 |
---|
| 1860 | |
---|
| 1861 | i=0 |
---|
| 1862 | while [ $i -lt $NB_ESSAI ] ; do |
---|
| 1863 | ~p86ipsl/CESIUM/bin/rebuild -f -o $@ > out_rsync 2>&1 |
---|
| 1864 | status=$? |
---|
| 1865 | if [ ${status} -gt 0 ] ; then |
---|
| 1866 | IGCM_debug_Print 2 "IGCM_sys_rebuild : error code ${status}" |
---|
| 1867 | cat out_rsync |
---|
| 1868 | \rm out_rsync |
---|
| 1869 | IGCM_debug_Print 2 "IGCM_sys_rebuild : ${i}/${NB_ESSAI} sleep ${DELAI} seconds and try again." |
---|
[734] | 1870 | firstArg=${1} |
---|
| 1871 | \rm ${firstArg} |
---|
[733] | 1872 | sleep $DELAI |
---|
[716] | 1873 | else |
---|
| 1874 | \rm out_rsync |
---|
| 1875 | break |
---|
| 1876 | fi |
---|
| 1877 | (( i = i + 1 )) |
---|
| 1878 | done |
---|
| 1879 | |
---|
[725] | 1880 | if [ ${status} -gt 0 ] ; then |
---|
[773] | 1881 | echo "IGCM_sys_rebuild : rebuild error code is ${status}" |
---|
[623] | 1882 | IGCM_debug_Exit "rebuild" |
---|
| 1883 | fi |
---|
[622] | 1884 | |
---|
[623] | 1885 | IGCM_debug_PopStack "IGCM_sys_rebuild" |
---|
[622] | 1886 | } |
---|
| 1887 | |
---|
[697] | 1888 | function IGCM_sys_rebuild_station { |
---|
| 1889 | IGCM_debug_PushStack "IGCM_sys_rebuild_station" -- $@ |
---|
| 1890 | typeset i list_opt file_in file_out prefix_invert list_invert |
---|
| 1891 | if ( $DEBUG_sys ) ; then |
---|
| 1892 | echo "IGCM_sys_rebuild_station :" $@ |
---|
| 1893 | fi |
---|
| 1894 | list_opt=$@ |
---|
| 1895 | |
---|
[773] | 1896 | # Invert Axis : t,x -> x,t |
---|
[697] | 1897 | # t,pres,x -> x,t,pres |
---|
| 1898 | # So that we can concatenate along x |
---|
| 1899 | i=0 |
---|
| 1900 | for file_in in ${list_opt} ; do |
---|
| 1901 | (( i = i + 1)) |
---|
| 1902 | [ ${i} = 1 ] && file_out=${file_in} && continue |
---|
| 1903 | prefix_invert=$( basename ${file_in} .nc ) |
---|
| 1904 | IGCM_sys_ncpdq -a x,time_counter -a x,time_counter,presnivs ${file_in} ${prefix_invert}_xt.nc |
---|
| 1905 | list_invert[${#list_invert[*]}]=${prefix_invert}_xt.nc |
---|
| 1906 | done |
---|
| 1907 | |
---|
| 1908 | # Concatenate |
---|
| 1909 | IGCM_sys_ncrcat ${list_invert[*]} histstn_xt.nc |
---|
| 1910 | |
---|
| 1911 | # Re-ivert file |
---|
| 1912 | IGCM_sys_ncpdq -a time_counter,x -a time_counter,presnivs,x histstn_xt.nc ${file_out} |
---|
| 1913 | |
---|
| 1914 | # Station re-ordering is too expansive to be run within libICGM |
---|
| 1915 | # This is due to (ncpdq - nrcat - ncpdq) I/O sequence. |
---|
| 1916 | # This re-ordering must be done "in memory" by the cmorization process |
---|
| 1917 | # Anyway this is the best sequence using (ncpdq - nrcat - ncpdq) |
---|
| 1918 | # BEGIN reordering |
---|
| 1919 | |
---|
| 1920 | # Only LMDZ text output contains the exact ordering of the station. |
---|
| 1921 | # We isolate this in the code below: |
---|
| 1922 | # 0 38 -157.5000000000000 70.98591549295774 |
---|
| 1923 | # 0 54 27.49999999999999 67.18309859154928 |
---|
| 1924 | # 0 56 -62.50000000000001 82.39436619718309 |
---|
| 1925 | # 0 79 12.49999999999999 78.59154929577466 |
---|
| 1926 | # 0 116 -165.0000000000000 76.05633802816901 |
---|
| 1927 | # 0 117 130.0000000000000 70.98591549295774 |
---|
| 1928 | # 0 118 110.0000000000000 87.46478873239437 |
---|
| 1929 | # 1 40 4.999999999999995 51.97183098591550 |
---|
| 1930 | # typeset iStation iProc list_opt file_in file_out prefix_invert |
---|
| 1931 | # typeset -Z4 j4 |
---|
| 1932 | # typeset -Z3 j3 |
---|
| 1933 | |
---|
| 1934 | # unset list_opt |
---|
| 1935 | # set +A list_opt $@ |
---|
| 1936 | |
---|
| 1937 | # Filename after rebuild |
---|
| 1938 | # file_out=${list_opt[0]} |
---|
| 1939 | # Prefix of output files |
---|
| 1940 | # prefix_invert=$( basename ${file_out} .nc ) |
---|
| 1941 | # Number of procs |
---|
| 1942 | # num_proc=$( grep -i mpi_size ${PREFIX}_${Exe_Output} | wc -l ) |
---|
| 1943 | |
---|
| 1944 | # iProc=0 |
---|
| 1945 | # while [ ${iProc} -lt ${num_proc} ] ; do |
---|
| 1946 | # Array containing Station as a number |
---|
| 1947 | # unset proc_stn |
---|
| 1948 | # set +A proc_stn $( grep "iophy_mpi rank ip lon lat $iProc" ${PREFIX}_${Exe_Output} | sed -e "s/iophy_mpi rank ip lon lat //g" | awk ' {print $2}' ) |
---|
| 1949 | # Number of stations produced by processor proc |
---|
| 1950 | # stationLast=${#proc_stn[*]} |
---|
| 1951 | # Proc number on 4 digits |
---|
| 1952 | # j4=${iProc} |
---|
| 1953 | # Init |
---|
| 1954 | # iStation=0 |
---|
| 1955 | # while [ ${iStation} -lt ${stationLast} ] ; do |
---|
| 1956 | # Station number on 3 digits |
---|
| 1957 | # j3=${proc_stn[${iStation}]} |
---|
| 1958 | # Extract station |
---|
[773] | 1959 | # Invert Axis : t,x -> x,t |
---|
[697] | 1960 | # t,pres,x -> x,t,pres |
---|
| 1961 | # So that we can concatenate along x |
---|
| 1962 | # IGCM_sys_ncpdq -a x,time_counter -a x,time_counter,presnivs -d x,$iStation,$iStation ${prefix_invert}_${j4}.nc ${prefix_invert}_stn_${j3}.nc |
---|
| 1963 | # (( iStation = iStation + 1 )) |
---|
| 1964 | # done |
---|
| 1965 | # (( iProc = iProc + 1 )) |
---|
| 1966 | # done |
---|
| 1967 | |
---|
| 1968 | # Concatenate all station along x |
---|
| 1969 | # IGCM_sys_ncrcat ${prefix_invert}_stn_???.nc ${prefix_invert}_xt.nc |
---|
| 1970 | |
---|
| 1971 | # Re-invert file |
---|
| 1972 | # IGCM_sys_ncpdq -a time_counter,x -a time_counter,presnivs,x ${prefix_invert}_xt.nc ${file_out} |
---|
| 1973 | |
---|
| 1974 | # END reordering |
---|
| 1975 | |
---|
| 1976 | IGCM_debug_PopStack "IGCM_sys_rebuild_station" |
---|
| 1977 | } |
---|
| 1978 | |
---|
[622] | 1979 | ############################################################ |
---|
| 1980 | # Activate Running Environnment Variables |
---|
| 1981 | |
---|
| 1982 | function IGCM_sys_activ_variables { |
---|
[623] | 1983 | IGCM_debug_PushStack "IGCM_sys_activ_variables" |
---|
| 1984 | if ( $DEBUG_sys ) ; then |
---|
| 1985 | echo "IGCM_sys_activ_variables" |
---|
| 1986 | fi |
---|
[622] | 1987 | |
---|
[623] | 1988 | ulimit -s unlimited |
---|
[622] | 1989 | |
---|
[623] | 1990 | IGCM_debug_PopStack "IGCM_sys_activ_variables" |
---|
[622] | 1991 | } |
---|
| 1992 | |
---|
| 1993 | ############################################################ |
---|
| 1994 | # Desactivate Running Environnment Variables |
---|
| 1995 | |
---|
| 1996 | function IGCM_sys_desactiv_variables { |
---|
[623] | 1997 | IGCM_debug_PushStack "IGCM_sys_desactiv_variables" |
---|
| 1998 | if ( $DEBUG_sys ) ; then |
---|
| 1999 | echo "IGCM_sys_desactiv_variables" |
---|
| 2000 | fi |
---|
| 2001 | IGCM_debug_PopStack "IGCM_sys_desactiv_variables" |
---|
[622] | 2002 | } |
---|
| 2003 | |
---|
[623] | 2004 | ############################################################ |
---|
| 2005 | # Build MPI/OMP scripts run file (dummy function) |
---|
[622] | 2006 | |
---|
| 2007 | function IGCM_sys_build_run_file { |
---|
| 2008 | |
---|
[623] | 2009 | IGCM_debug_Print 3 " dummy function : IGCM_sys_build_run_file " |
---|
[622] | 2010 | |
---|
| 2011 | } |
---|
| 2012 | |
---|
| 2013 | ############################################################ |
---|
| 2014 | # Build MPI/OMP scripts |
---|
[623] | 2015 | function IGCM_sys_build_execution_scripts |
---|
[622] | 2016 | { |
---|
[623] | 2017 | IGCM_debug_PushStack "IGCM_sys_build_execution_scripts" $@ |
---|
| 2018 | if ( $DEBUG_sys ) ; then |
---|
| 2019 | echo "IGCM_sys_build_execution_scripts " $@ |
---|
| 2020 | fi |
---|
[622] | 2021 | |
---|
| 2022 | # Verification with MSUB parameter |
---|
[623] | 2023 | EXECUTION=${HOST_MPIRUN_COMMAND} |
---|
[622] | 2024 | |
---|
[623] | 2025 | if ( ${OK_PARA_MPMD} ) ; then |
---|
[622] | 2026 | |
---|
[623] | 2027 | if [ -f run_file ] ; then |
---|
| 2028 | IGCM_sys_Rm -f run_file |
---|
| 2029 | fi |
---|
| 2030 | touch run_file |
---|
[622] | 2031 | |
---|
| 2032 | # run_file construction |
---|
| 2033 | |
---|
| 2034 | # Then first loop on the components for the coupler ie oasis |
---|
| 2035 | |
---|
| 2036 | ### the coupler ie oasis must be the first one |
---|
| 2037 | for comp in ${config_ListOfComponents[*]} ; do |
---|
| 2038 | |
---|
[623] | 2039 | eval ExeNameIn=\${config_Executable_${comp}[0]} |
---|
| 2040 | eval ExeNameOut=\${config_Executable_${comp}[1]} |
---|
[622] | 2041 | |
---|
[773] | 2042 | # for CPL component only |
---|
[623] | 2043 | if [ "X${comp}" = "XCPL" ] ; then |
---|
[622] | 2044 | |
---|
[623] | 2045 | eval comp_proc_mpi_loc=\${${comp}_PROC_MPI} |
---|
| 2046 | eval comp_proc_omp_loc=\${${comp}_PROC_OMP} |
---|
| 2047 | echo "${comp_proc_mpi_loc} ./${ExeNameOut}" >> run_file |
---|
| 2048 | fi |
---|
[622] | 2049 | done |
---|
| 2050 | |
---|
| 2051 | # Then second loop on the components |
---|
| 2052 | |
---|
| 2053 | for comp in ${config_ListOfComponents[*]} ; do |
---|
| 2054 | |
---|
[623] | 2055 | eval ExeNameIn=\${config_Executable_${comp}[0]} |
---|
| 2056 | eval ExeNameOut=\${config_Executable_${comp}[1]} |
---|
[622] | 2057 | |
---|
[773] | 2058 | # Only if we really have an executable for the component and not the coupler ie oasis: |
---|
[623] | 2059 | if ( [ "X${ExeNameOut}" != X\"\" ] && [ "X${comp}" != "XCPL" ] ) ; then |
---|
[622] | 2060 | |
---|
[623] | 2061 | eval comp_proc_mpi_loc=\${${comp}_PROC_MPI} |
---|
| 2062 | eval comp_proc_omp_loc=\${${comp}_PROC_OMP} |
---|
| 2063 | echo "${comp_proc_mpi_loc} ./${ExeNameOut}" >> run_file |
---|
| 2064 | fi |
---|
[622] | 2065 | done |
---|
| 2066 | |
---|
| 2067 | EXECUTION="${HOST_MPIRUN_COMMAND} -f ./run_file" |
---|
| 2068 | |
---|
| 2069 | IGCM_sys_Chmod u+x run_file |
---|
| 2070 | if ( $DEBUG_sys ) ; then |
---|
| 2071 | echo "run_file contains : " |
---|
| 2072 | cat run_file |
---|
| 2073 | fi |
---|
| 2074 | |
---|
[623] | 2075 | else # Only one executable. launch it. |
---|
[622] | 2076 | |
---|
[623] | 2077 | # |
---|
[622] | 2078 | for comp in ${config_ListOfComponents[*]} ; do |
---|
| 2079 | |
---|
[685] | 2080 | # Only if we really have an executable for the component : |
---|
[623] | 2081 | eval ExeNameOut=\${config_Executable_${comp}[1]} |
---|
[685] | 2082 | if ( [ "X${ExeNameOut}" != X\"\" ] && [ "X${ExeNameOut}" != "Xinca.dat" ] ) ; then |
---|
[622] | 2083 | |
---|
[685] | 2084 | echo "#!/bin/ksh" > script_${ExeNameOut}.ksh |
---|
| 2085 | echo "" >> script_${ExeNameOut}.ksh |
---|
| 2086 | IGCM_sys_Chmod u+x script_${ExeNameOut}.ksh |
---|
| 2087 | |
---|
| 2088 | if ( ${OK_PARA_OMP} ) ; then |
---|
| 2089 | eval comp_proc_omp_loc=\${${comp}_PROC_OMP} |
---|
| 2090 | echo "" >> script_${ExeNameOut}.ksh |
---|
| 2091 | echo "export KMP_STACKSIZE=3g" >> script_${ExeNameOut}.ksh |
---|
| 2092 | echo "export KMP_LIBRARY=turnaround" >> script_${ExeNameOut}.ksh |
---|
| 2093 | echo "export MKL_SERIAL=YES" >> script_${ExeNameOut}.ksh |
---|
| 2094 | echo "OMP_NUM_THREADS=${comp_proc_omp_loc}" >> script_${ExeNameOut}.ksh |
---|
| 2095 | fi |
---|
| 2096 | |
---|
| 2097 | if ( ${OK_PARA_MPI} ) ; then |
---|
[623] | 2098 | eval comp_proc_mpi_loc=\${${comp}_PROC_MPI} |
---|
[685] | 2099 | # Default : ccc_mprun used if nb_proc gt 1 |
---|
| 2100 | # to have out/err per process on different files |
---|
| 2101 | # echo "./${ExeNameOut} > out_${ExeNameOut}.out.\${SLURM_PROCID} 2>out_${ExeNameOut}.err.\${SLURM_PROCID}" >> script_${ExeNameOut}.ksh |
---|
| 2102 | echo "./${ExeNameOut}" >> script_${ExeNameOut}.ksh |
---|
| 2103 | EXECUTION="${HOST_MPIRUN_COMMAND} -n ${comp_proc_mpi_loc} ./script_${ExeNameOut}.ksh" |
---|
[623] | 2104 | else |
---|
[685] | 2105 | # Default : ccc_mprun is NOT used if nb_proc eq 1 |
---|
| 2106 | # to have out/err per process on different files |
---|
| 2107 | # echo "./${ExeNameOut} > out_${ExeNameOut}.out 2>out_${ExeNameOut}.err" >> script_${ExeNameOut}.ksh |
---|
| 2108 | echo "./${ExeNameOut}" >> script_${ExeNameOut}.ksh |
---|
| 2109 | EXECUTION="/usr/bin/time ./script_${ExeNameOut}.ksh" |
---|
[622] | 2110 | fi |
---|
[685] | 2111 | |
---|
| 2112 | IGCM_debug_Print 1 "sys Curie : script_${ExeNameOut}.ksh contains" |
---|
| 2113 | cat script_${ExeNameOut}.ksh |
---|
| 2114 | |
---|
[623] | 2115 | fi |
---|
[622] | 2116 | |
---|
| 2117 | done |
---|
| 2118 | |
---|
[623] | 2119 | fi |
---|
[622] | 2120 | |
---|
[623] | 2121 | IGCM_debug_Print 1 "sys Curie : execution command is " |
---|
| 2122 | IGCM_debug_Print 1 "$EXECUTION" |
---|
[622] | 2123 | |
---|
[623] | 2124 | IGCM_debug_PopStack "IGCM_sys_build_execution_scripts" |
---|
[622] | 2125 | } |
---|
| 2126 | |
---|
[714] | 2127 | ############################################################ |
---|
| 2128 | # Check of space available on temporary filesytems |
---|
| 2129 | function IGCM_sys_check_quota { |
---|
[776] | 2130 | IGCM_debug_PushStack "IGCM_sys_check_quota" |
---|
| 2131 | if ( $DEBUG_sys ) ; then |
---|
| 2132 | echo "IGCM_sys_check_quota" |
---|
| 2133 | fi |
---|
| 2134 | # Limit of quota (in %) |
---|
| 2135 | limit_quota=90 |
---|
| 2136 | |
---|
| 2137 | # Check of the volume |
---|
| 2138 | volume_quota=$(ccc_quota | grep ' scratch' | awk '{print $2}') |
---|
| 2139 | volume_avail=$(ccc_quota | grep ' scratch' | awk '{print $3}') |
---|
| 2140 | |
---|
| 2141 | if ( [ ! X${volume_quota} = X ] && [ ! ${volume_quota} = "-" ] ) ; then |
---|
| 2142 | |
---|
| 2143 | unit_avail=${volume_avail: -1} |
---|
| 2144 | unit_quota=${volume_quota: -1} |
---|
| 2145 | |
---|
| 2146 | if [ "${unit_quota}" = "*" ] ; then |
---|
| 2147 | IGCM_debug_Print 1 "Please, check your quota of volume on scratch" |
---|
| 2148 | IGCM_debug_Print 1 "More than 100% of your quota is used" |
---|
| 2149 | IGCM_debug_Print 1 "Use the ccc_quota command to check" |
---|
| 2150 | IGCM_debug_Print 1 "You must have more than 10% available to run" |
---|
| 2151 | IGCM_debug_Exit "Not enough space to run ! STOP HERE" |
---|
| 2152 | IGCM_debug_Verif_Exit |
---|
[714] | 2153 | fi |
---|
[776] | 2154 | |
---|
| 2155 | temp_avail=${volume_avail%%${volume_avail: -1}*} |
---|
| 2156 | temp_quota=${volume_quota%%${volume_quota: -1}*} |
---|
| 2157 | |
---|
| 2158 | if [ ! ${unit_avail} = ${unit_quota} ] ; then |
---|
| 2159 | |
---|
| 2160 | # Convertion |
---|
| 2161 | if [ ${volume_avail: -1} = "T" ] ; then |
---|
| 2162 | (( temp_avail = temp_avail * 1000000000000 )) |
---|
| 2163 | elif [ ${volume_avail: -1} = "G" ] ; then |
---|
| 2164 | (( temp_avail = temp_avail * 1000000000 )) |
---|
| 2165 | elif [ ${volume_avail: -1} = "M" ] ; then |
---|
| 2166 | (( temp_avail = temp_avail * 1000000 )) |
---|
| 2167 | elif [ ${volume_avail: -1} = "k" ] ; then |
---|
| 2168 | (( temp_avail = temp_avail * 1000 )) |
---|
| 2169 | else |
---|
| 2170 | (( temp_avail = volume_avail )) |
---|
| 2171 | fi |
---|
| 2172 | if [ ${volume_quota: -1} = "T" ] ; then |
---|
| 2173 | (( temp_quota = temp_quota * 1000000000000 )) |
---|
| 2174 | elif [ ${volume_quota: -1} = "G" ] ; then |
---|
| 2175 | (( temp_quota = temp_quota * 1000000000 )) |
---|
| 2176 | elif [ ${volume_quota: -1} = "M" ] ; then |
---|
| 2177 | (( temp_quota = temp_quota * 1000000 )) |
---|
| 2178 | elif [ ${volume_quota: -1} = "k" ] ; then |
---|
| 2179 | (( temp_quota = temp_quota * 1000 )) |
---|
| 2180 | else |
---|
| 2181 | (( temp_quota = volume_quota )) |
---|
| 2182 | fi |
---|
| 2183 | fi |
---|
| 2184 | |
---|
| 2185 | quota_volume=$(echo "scale=2 ; $temp_quota/$temp_avail*100" | bc) |
---|
| 2186 | # echo "volume ratio is " $quota_volume |
---|
| 2187 | |
---|
| 2188 | if [ ${quota_volume} -ge ${limit_quota} ] ; then |
---|
| 2189 | IGCM_debug_Print 1 "Please, check your quota of volume on scratch" |
---|
| 2190 | IGCM_debug_Print 1 "${quota_volume}% of your quota is used" |
---|
| 2191 | IGCM_debug_Print 1 "Use the ccc_quota command to check" |
---|
| 2192 | IGCM_debug_Print 1 "You must have more than 10% available to run" |
---|
| 2193 | IGCM_debug_Exit "Not enough space to run ! STOP HERE" |
---|
| 2194 | IGCM_debug_Verif_Exit |
---|
| 2195 | fi |
---|
| 2196 | |
---|
| 2197 | fi |
---|
| 2198 | |
---|
| 2199 | # Check of the number of inodes |
---|
| 2200 | |
---|
| 2201 | inode_quota=$(ccc_quota | grep ' scratch' | awk '{print $6}') |
---|
| 2202 | inode_avail=$(ccc_quota | grep ' scratch' | awk '{print $7}') |
---|
| 2203 | |
---|
| 2204 | if ( [ ! X${inode_quota} = X ] && [ ! ${inode_quota} = "-" ] ) ; then |
---|
| 2205 | |
---|
| 2206 | unit_avail=${inode_avail: -1} |
---|
| 2207 | unit_quota=${inode_quota: -1} |
---|
| 2208 | |
---|
| 2209 | if [ "${unit_quota}" = "*" ] ; then |
---|
| 2210 | IGCM_debug_Print 1 "Please, check your quota of inode on scratch" |
---|
| 2211 | IGCM_debug_Print 1 "More than 100% of your quota is used" |
---|
| 2212 | IGCM_debug_Print 1 "Use the ccc_quota command to check" |
---|
| 2213 | IGCM_debug_Print 1 "You must have more than 10% available to run" |
---|
| 2214 | IGCM_debug_Exit "Not enough space to run ! STOP HERE" |
---|
| 2215 | IGCM_debug_Verif_Exit |
---|
| 2216 | fi |
---|
| 2217 | |
---|
| 2218 | temp_avail=${inode_avail%%${inode_avail: -1}*} |
---|
| 2219 | temp_quota=${inode_quota%%${inode_quota: -1}*} |
---|
| 2220 | |
---|
| 2221 | if [ ! ${unit_avail} = ${unit_quota} ] ; then |
---|
| 2222 | |
---|
| 2223 | # Convertion |
---|
| 2224 | if [ ${inode_avail: -1} = "T" ] ; then |
---|
| 2225 | (( temp_avail = temp_avail * 1000000000000 )) |
---|
| 2226 | elif [ ${inode_avail: -1} = "G" ] ; then |
---|
| 2227 | (( temp_avail = temp_avail * 1000000000 )) |
---|
| 2228 | elif [ ${inode_avail: -1} = "M" ] ; then |
---|
| 2229 | (( temp_avail = temp_avail * 1000000 )) |
---|
| 2230 | elif [ ${inode_avail: -1} = "k" ] ; then |
---|
| 2231 | (( temp_avail = temp_avail * 1000 )) |
---|
| 2232 | else |
---|
| 2233 | (( temp_avail = inode_avail )) |
---|
| 2234 | fi |
---|
| 2235 | |
---|
| 2236 | if [ ${inode_quota: -1} = "T" ] ; then |
---|
| 2237 | (( temp_quota = temp_quota * 1000000000000 )) |
---|
| 2238 | elif [ ${inode_quota: -1} = "G" ] ; then |
---|
| 2239 | (( temp_quota = temp_quota * 1000000000 )) |
---|
| 2240 | elif [ ${inode_quota: -1} = "M" ] ; then |
---|
| 2241 | (( temp_quota = temp_quota * 1000000 )) |
---|
| 2242 | elif [ ${inode_quota: -1} = "k" ] ; then |
---|
| 2243 | (( temp_quota = temp_quota * 1000 )) |
---|
| 2244 | else |
---|
| 2245 | (( temp_quota = inode_quota )) |
---|
| 2246 | fi |
---|
| 2247 | fi |
---|
| 2248 | quota_inode=$(echo "scale=2 ; $temp_quota/$temp_avail*100" | bc) |
---|
| 2249 | # echo "inode ratio is " $quota_inode |
---|
| 2250 | |
---|
| 2251 | if [ ${quota_inode} -ge ${limit_quota} ] ; then |
---|
| 2252 | IGCM_debug_Print 1 "Please, check your quota of inode on scratch" |
---|
| 2253 | IGCM_debug_Print 1 "${quota_inode}% of your quota is used" |
---|
| 2254 | IGCM_debug_Print 1 "Use the ccc_quota command to check" |
---|
| 2255 | IGCM_debug_Print 1 "You must have more than 10% available to run" |
---|
| 2256 | IGCM_debug_Exit "Not enough space to run ! STOP HERE" |
---|
| 2257 | IGCM_debug_Verif_Exit |
---|
| 2258 | fi |
---|
| 2259 | fi |
---|
| 2260 | IGCM_debug_PopStack "IGCM_sys_check_quota" |
---|
[714] | 2261 | } |
---|
| 2262 | |
---|
[773] | 2263 | #D-#================================================== |
---|
| 2264 | #D-function IGCM_sys_CountJobInQueue |
---|
| 2265 | #D-* Purpose: Check if job_name is currently |
---|
| 2266 | #D- running or in queue |
---|
| 2267 | #D-* Examples: IGCM_sys_CountJobInQueue ${JobName} NbRun |
---|
| 2268 | #D- |
---|
| 2269 | |
---|
| 2270 | function IGCM_sys_CountJobInQueue { |
---|
| 2271 | IGCM_debug_PushStack "IGCM_sys_CountJobInQueue" |
---|
| 2272 | if ( $DEBUG_sys ) ; then |
---|
| 2273 | echo "IGCM_sys_CountJobInQueue" |
---|
| 2274 | fi |
---|
| 2275 | |
---|
| 2276 | #NbRun=$( ccc_mstat -f | grep -c ${JobName} ) |
---|
| 2277 | |
---|
| 2278 | # With -f option, the full job name is given in the last column |
---|
| 2279 | NbRun=$( ccc_mstat -f | gawk -v JobName=$1 'BEGIN { x=0 } ($NF~String) { x=x+1 } END { print x }' ) |
---|
| 2280 | |
---|
| 2281 | eval ${2}=${NbRun} |
---|
| 2282 | |
---|
| 2283 | IGCM_debug_PopStack "IGCM_sys_CountJobInQueue" |
---|
| 2284 | } |
---|
| 2285 | |
---|
[622] | 2286 | ############################################################## |
---|
| 2287 | # NCO OPERATOR |
---|
| 2288 | |
---|
[623] | 2289 | function IGCM_sys_ncap2 { |
---|
| 2290 | IGCM_debug_PushStack "IGCM_sys_ncap2" -- $@ |
---|
| 2291 | if ( $DEBUG_sys ) ; then |
---|
| 2292 | echo "IGCM_sys_ncap2 :" $@ |
---|
| 2293 | fi |
---|
[713] | 2294 | |
---|
| 2295 | typeset NB_ESSAI DELAI status i |
---|
| 2296 | # number of tentative |
---|
| 2297 | NB_ESSAI=3 |
---|
| 2298 | # time delay between tentative |
---|
| 2299 | DELAI=2 |
---|
| 2300 | |
---|
| 2301 | i=0 |
---|
| 2302 | while [ $i -lt $NB_ESSAI ] ; do |
---|
| 2303 | ncap2 "$@" > out_rsync 2>&1 |
---|
| 2304 | status=$? |
---|
| 2305 | if [ ${status} -gt 0 ] ; then |
---|
| 2306 | IGCM_debug_Print 2 "IGCM_sys_ncap2 : error code ${status}" |
---|
| 2307 | cat out_rsync |
---|
| 2308 | \rm out_rsync |
---|
| 2309 | IGCM_debug_Print 2 "IGCM_sys_ncap2 : ${i}/${NB_ESSAI} sleep ${DELAI} seconds and try again." |
---|
[733] | 2310 | sleep $DELAI |
---|
[713] | 2311 | else |
---|
| 2312 | \rm out_rsync |
---|
| 2313 | break |
---|
| 2314 | fi |
---|
| 2315 | (( i = i + 1 )) |
---|
| 2316 | done |
---|
| 2317 | |
---|
| 2318 | if [ ${status} -gt 0 ] ; then |
---|
| 2319 | echo "IGCM_sys_ncap2 : ncap2 error" |
---|
| 2320 | IGCM_debug_Exit "ncap2" |
---|
[623] | 2321 | fi |
---|
| 2322 | |
---|
| 2323 | IGCM_debug_PopStack "IGCM_sys_ncap2" |
---|
| 2324 | } |
---|
| 2325 | |
---|
[622] | 2326 | function IGCM_sys_ncatted { |
---|
[623] | 2327 | IGCM_debug_PushStack "IGCM_sys_ncatted" -- $@ |
---|
| 2328 | if ( $DEBUG_sys ) ; then |
---|
| 2329 | echo "IGCM_sys_ncatted :" $@ |
---|
| 2330 | fi |
---|
[713] | 2331 | |
---|
| 2332 | typeset NB_ESSAI DELAI status i |
---|
| 2333 | # number of tentative |
---|
| 2334 | NB_ESSAI=3 |
---|
| 2335 | # time delay between tentative |
---|
| 2336 | DELAI=2 |
---|
| 2337 | |
---|
| 2338 | i=0 |
---|
| 2339 | while [ $i -lt $NB_ESSAI ] ; do |
---|
| 2340 | ncatted "$@" > out_rsync 2>&1 |
---|
| 2341 | status=$? |
---|
| 2342 | if [ ${status} -gt 0 ] ; then |
---|
| 2343 | IGCM_debug_Print 2 "IGCM_sys_ncatted : error code ${status}" |
---|
| 2344 | cat out_rsync |
---|
| 2345 | \rm out_rsync |
---|
| 2346 | IGCM_debug_Print 2 "IGCM_sys_ncatted : ${i}/${NB_ESSAI} sleep ${DELAI} seconds and try again." |
---|
[733] | 2347 | sleep $DELAI |
---|
[713] | 2348 | else |
---|
| 2349 | \rm out_rsync |
---|
| 2350 | break |
---|
| 2351 | fi |
---|
| 2352 | (( i = i + 1 )) |
---|
| 2353 | done |
---|
| 2354 | |
---|
| 2355 | if [ ${status} -gt 0 ] ; then |
---|
| 2356 | echo "IGCM_sys_ncatted : ncatted error" |
---|
| 2357 | IGCM_debug_Exit "ncatted" |
---|
[623] | 2358 | fi |
---|
[622] | 2359 | |
---|
[623] | 2360 | IGCM_debug_PopStack "IGCM_sys_ncatted" |
---|
[622] | 2361 | } |
---|
| 2362 | |
---|
| 2363 | function IGCM_sys_ncbo { |
---|
[623] | 2364 | IGCM_debug_PushStack "IGCM_sys_ncbo" -- $@ |
---|
| 2365 | if ( $DEBUG_sys ) ; then |
---|
| 2366 | echo "IGCM_sys_ncbo :" $@ |
---|
| 2367 | fi |
---|
[713] | 2368 | |
---|
| 2369 | typeset NB_ESSAI DELAI status i |
---|
| 2370 | # number of tentative |
---|
| 2371 | NB_ESSAI=3 |
---|
| 2372 | # time delay between tentative |
---|
| 2373 | DELAI=2 |
---|
| 2374 | |
---|
| 2375 | i=0 |
---|
| 2376 | while [ $i -lt $NB_ESSAI ] ; do |
---|
| 2377 | ncbo $@ > out_rsync 2>&1 |
---|
| 2378 | status=$? |
---|
| 2379 | if [ ${status} -gt 0 ] ; then |
---|
| 2380 | IGCM_debug_Print 2 "IGCM_sys_ncbo : error code ${status}" |
---|
| 2381 | cat out_rsync |
---|
| 2382 | \rm out_rsync |
---|
| 2383 | IGCM_debug_Print 2 "IGCM_sys_ncbo : ${i}/${NB_ESSAI} sleep ${DELAI} seconds and try again." |
---|
[733] | 2384 | sleep $DELAI |
---|
[713] | 2385 | else |
---|
| 2386 | \rm out_rsync |
---|
| 2387 | break |
---|
| 2388 | fi |
---|
| 2389 | (( i = i + 1 )) |
---|
| 2390 | done |
---|
| 2391 | |
---|
| 2392 | if [ ${status} -gt 0 ] ; then |
---|
| 2393 | echo "IGCM_sys_ncbo : ncbo error" |
---|
| 2394 | IGCM_debug_Exit "ncbo" |
---|
[623] | 2395 | fi |
---|
[622] | 2396 | |
---|
[623] | 2397 | IGCM_debug_PopStack "IGCM_sys_ncbo" |
---|
[622] | 2398 | } |
---|
| 2399 | |
---|
| 2400 | function IGCM_sys_ncdiff { |
---|
[623] | 2401 | IGCM_debug_PushStack "IGCM_sys_ncdiff" -- $@ |
---|
| 2402 | if ( $DEBUG_sys ) ; then |
---|
| 2403 | echo "IGCM_sys_ncdiff :" $@ |
---|
| 2404 | fi |
---|
[713] | 2405 | |
---|
| 2406 | typeset NB_ESSAI DELAI status i |
---|
| 2407 | # number of tentative |
---|
| 2408 | NB_ESSAI=3 |
---|
| 2409 | # time delay between tentative |
---|
| 2410 | DELAI=2 |
---|
| 2411 | |
---|
| 2412 | i=0 |
---|
| 2413 | while [ $i -lt $NB_ESSAI ] ; do |
---|
| 2414 | ncdiff $@ > out_rsync 2>&1 |
---|
| 2415 | status=$? |
---|
| 2416 | if [ ${status} -gt 0 ] ; then |
---|
| 2417 | IGCM_debug_Print 2 "IGCM_sys_ncdiff : error code ${status}" |
---|
| 2418 | cat out_rsync |
---|
| 2419 | \rm out_rsync |
---|
| 2420 | IGCM_debug_Print 2 "IGCM_sys_ncdiff : ${i}/${NB_ESSAI} sleep ${DELAI} seconds and try again." |
---|
[733] | 2421 | sleep $DELAI |
---|
[713] | 2422 | else |
---|
| 2423 | \rm out_rsync |
---|
| 2424 | break |
---|
| 2425 | fi |
---|
| 2426 | (( i = i + 1 )) |
---|
| 2427 | done |
---|
| 2428 | |
---|
| 2429 | if [ ${status} -gt 0 ] ; then |
---|
| 2430 | echo "IGCM_sys_ncdiff : ncdiff error" |
---|
| 2431 | IGCM_debug_Exit "ncdiff" |
---|
[623] | 2432 | fi |
---|
[622] | 2433 | |
---|
[623] | 2434 | IGCM_debug_PopStack "IGCM_sys_ncdiff" |
---|
[622] | 2435 | } |
---|
| 2436 | |
---|
| 2437 | function IGCM_sys_ncea { |
---|
[623] | 2438 | IGCM_debug_PushStack "IGCM_sys_ncea" -- $@ |
---|
| 2439 | if ( $DEBUG_sys ) ; then |
---|
| 2440 | echo "IGCM_sys_ncea :" $@ |
---|
| 2441 | fi |
---|
[713] | 2442 | |
---|
| 2443 | typeset NB_ESSAI DELAI status i |
---|
| 2444 | # number of tentative |
---|
| 2445 | NB_ESSAI=3 |
---|
| 2446 | # time delay between tentative |
---|
| 2447 | DELAI=2 |
---|
| 2448 | |
---|
| 2449 | i=0 |
---|
| 2450 | while [ $i -lt $NB_ESSAI ] ; do |
---|
| 2451 | ncea $@ > out_rsync 2>&1 |
---|
| 2452 | status=$? |
---|
| 2453 | if [ ${status} -gt 0 ] ; then |
---|
| 2454 | IGCM_debug_Print 2 "IGCM_sys_ncea : error code ${status}" |
---|
| 2455 | cat out_rsync |
---|
| 2456 | \rm out_rsync |
---|
| 2457 | IGCM_debug_Print 2 "IGCM_sys_ncea : ${i}/${NB_ESSAI} sleep ${DELAI} seconds and try again." |
---|
[733] | 2458 | sleep $DELAI |
---|
[713] | 2459 | else |
---|
| 2460 | \rm out_rsync |
---|
| 2461 | break |
---|
| 2462 | fi |
---|
| 2463 | (( i = i + 1 )) |
---|
| 2464 | done |
---|
| 2465 | |
---|
| 2466 | if [ ${status} -gt 0 ] ; then |
---|
| 2467 | echo "IGCM_sys_ncea : ncea error" |
---|
| 2468 | IGCM_debug_Exit "ncea" |
---|
[623] | 2469 | fi |
---|
[622] | 2470 | |
---|
[623] | 2471 | IGCM_debug_PopStack "IGCM_sys_ncea" |
---|
[622] | 2472 | } |
---|
| 2473 | |
---|
| 2474 | function IGCM_sys_ncecat { |
---|
[623] | 2475 | IGCM_debug_PushStack "IGCM_sys_ncecat" -- $@ |
---|
| 2476 | if ( $DEBUG_sys ) ; then |
---|
| 2477 | echo "IGCM_sys_ncecat :" $@ |
---|
| 2478 | fi |
---|
[713] | 2479 | |
---|
| 2480 | typeset NB_ESSAI DELAI status i |
---|
| 2481 | # number of tentative |
---|
| 2482 | NB_ESSAI=3 |
---|
| 2483 | # time delay between tentative |
---|
| 2484 | DELAI=2 |
---|
| 2485 | |
---|
| 2486 | i=0 |
---|
| 2487 | while [ $i -lt $NB_ESSAI ] ; do |
---|
| 2488 | ncecat $@ > out_rsync 2>&1 |
---|
| 2489 | status=$? |
---|
| 2490 | if [ ${status} -gt 0 ] ; then |
---|
| 2491 | IGCM_debug_Print 2 "IGCM_sys_ncecat : error code ${status}" |
---|
| 2492 | cat out_rsync |
---|
| 2493 | \rm out_rsync |
---|
| 2494 | IGCM_debug_Print 2 "IGCM_sys_ncecat : ${i}/${NB_ESSAI} sleep ${DELAI} seconds and try again." |
---|
[733] | 2495 | sleep $DELAI |
---|
[713] | 2496 | else |
---|
| 2497 | \rm out_rsync |
---|
| 2498 | break |
---|
| 2499 | fi |
---|
| 2500 | (( i = i + 1 )) |
---|
| 2501 | done |
---|
| 2502 | |
---|
| 2503 | if [ ${status} -gt 0 ] ; then |
---|
| 2504 | echo "IGCM_sys_ncecat : ncecat error" |
---|
| 2505 | IGCM_debug_Exit "ncecat" |
---|
[623] | 2506 | fi |
---|
[622] | 2507 | |
---|
[623] | 2508 | IGCM_debug_PopStack "IGCM_sys_ncecat" |
---|
[622] | 2509 | } |
---|
| 2510 | |
---|
| 2511 | function IGCM_sys_ncflint { |
---|
[623] | 2512 | IGCM_debug_PushStack "IGCM_sys_ncflint" -- $@ |
---|
| 2513 | if ( $DEBUG_sys ) ; then |
---|
| 2514 | echo "IGCM_sys_ncflint :" $@ |
---|
| 2515 | fi |
---|
[713] | 2516 | |
---|
| 2517 | typeset NB_ESSAI DELAI status i |
---|
| 2518 | # number of tentative |
---|
| 2519 | NB_ESSAI=3 |
---|
| 2520 | # time delay between tentative |
---|
| 2521 | DELAI=2 |
---|
| 2522 | |
---|
| 2523 | i=0 |
---|
| 2524 | while [ $i -lt $NB_ESSAI ] ; do |
---|
| 2525 | ncflint $@ > out_rsync 2>&1 |
---|
| 2526 | status=$? |
---|
| 2527 | if [ ${status} -gt 0 ] ; then |
---|
| 2528 | IGCM_debug_Print 2 "IGCM_sys_ncflint : error code ${status}" |
---|
| 2529 | cat out_rsync |
---|
| 2530 | \rm out_rsync |
---|
| 2531 | IGCM_debug_Print 2 "IGCM_sys_ncflint : ${i}/${NB_ESSAI} sleep ${DELAI} seconds and try again." |
---|
[733] | 2532 | sleep $DELAI |
---|
[713] | 2533 | else |
---|
| 2534 | \rm out_rsync |
---|
| 2535 | break |
---|
| 2536 | fi |
---|
| 2537 | (( i = i + 1 )) |
---|
| 2538 | done |
---|
| 2539 | |
---|
| 2540 | if [ ${status} -gt 0 ] ; then |
---|
| 2541 | echo "IGCM_sys_ncflint : ncflint error" |
---|
| 2542 | IGCM_debug_Exit "ncflint" |
---|
[623] | 2543 | fi |
---|
[622] | 2544 | |
---|
[623] | 2545 | IGCM_debug_PopStack "IGCM_sys_ncflint" |
---|
[622] | 2546 | } |
---|
| 2547 | |
---|
| 2548 | function IGCM_sys_ncks { |
---|
[623] | 2549 | IGCM_debug_PushStack "IGCM_sys_ncks" -- $@ |
---|
| 2550 | if ( $DEBUG_sys ) ; then |
---|
| 2551 | echo "IGCM_sys_ncks :" $@ |
---|
| 2552 | fi |
---|
[713] | 2553 | |
---|
| 2554 | typeset NB_ESSAI DELAI status i |
---|
| 2555 | # number of tentative |
---|
| 2556 | NB_ESSAI=3 |
---|
| 2557 | # time delay between tentative |
---|
| 2558 | DELAI=2 |
---|
| 2559 | |
---|
| 2560 | i=0 |
---|
| 2561 | while [ $i -lt $NB_ESSAI ] ; do |
---|
| 2562 | ncks $@ > out_rsync 2>&1 |
---|
| 2563 | status=$? |
---|
| 2564 | if [ ${status} -gt 0 ] ; then |
---|
| 2565 | IGCM_debug_Print 2 "IGCM_sys_ncks : error code ${status}" |
---|
| 2566 | cat out_rsync |
---|
| 2567 | \rm out_rsync |
---|
| 2568 | IGCM_debug_Print 2 "IGCM_sys_ncks : ${i}/${NB_ESSAI} sleep ${DELAI} seconds and try again." |
---|
[733] | 2569 | sleep $DELAI |
---|
[713] | 2570 | else |
---|
| 2571 | \rm out_rsync |
---|
| 2572 | break |
---|
| 2573 | fi |
---|
| 2574 | (( i = i + 1 )) |
---|
| 2575 | done |
---|
| 2576 | |
---|
| 2577 | if [ ${status} -gt 0 ] ; then |
---|
| 2578 | echo "IGCM_sys_ncks : ncks error" |
---|
| 2579 | IGCM_debug_Exit "ncks" |
---|
[623] | 2580 | fi |
---|
[622] | 2581 | |
---|
[623] | 2582 | IGCM_debug_PopStack "IGCM_sys_ncks" |
---|
[622] | 2583 | } |
---|
| 2584 | |
---|
| 2585 | function IGCM_sys_ncpdq { |
---|
[623] | 2586 | IGCM_debug_PushStack "IGCM_sys_ncpdq" -- $@ |
---|
| 2587 | if ( $DEBUG_sys ) ; then |
---|
| 2588 | echo "IGCM_sys_ncpdq :" $@ |
---|
| 2589 | fi |
---|
[713] | 2590 | |
---|
| 2591 | typeset NB_ESSAI DELAI status i |
---|
| 2592 | # number of tentative |
---|
| 2593 | NB_ESSAI=3 |
---|
| 2594 | # time delay between tentative |
---|
| 2595 | DELAI=2 |
---|
| 2596 | |
---|
| 2597 | i=0 |
---|
| 2598 | while [ $i -lt $NB_ESSAI ] ; do |
---|
| 2599 | ncpdq $@ > out_rsync 2>&1 |
---|
| 2600 | status=$? |
---|
| 2601 | if [ ${status} -gt 0 ] ; then |
---|
| 2602 | IGCM_debug_Print 2 "IGCM_sys_ncpdq : error code ${status}" |
---|
| 2603 | cat out_rsync |
---|
| 2604 | \rm out_rsync |
---|
| 2605 | IGCM_debug_Print 2 "IGCM_sys_ncpdq : ${i}/${NB_ESSAI} sleep ${DELAI} seconds and try again." |
---|
[733] | 2606 | sleep $DELAI |
---|
[713] | 2607 | else |
---|
| 2608 | \rm out_rsync |
---|
| 2609 | break |
---|
| 2610 | fi |
---|
| 2611 | (( i = i + 1 )) |
---|
| 2612 | done |
---|
| 2613 | |
---|
| 2614 | if [ ${status} -gt 0 ] ; then |
---|
| 2615 | echo "IGCM_sys_ncpdq : ncpdq error" |
---|
| 2616 | IGCM_debug_Exit "ncpdq" |
---|
[623] | 2617 | fi |
---|
[622] | 2618 | |
---|
[623] | 2619 | IGCM_debug_PopStack "IGCM_sys_ncpdq" |
---|
[622] | 2620 | } |
---|
| 2621 | |
---|
| 2622 | function IGCM_sys_ncra { |
---|
[623] | 2623 | IGCM_debug_PushStack "IGCM_sys_ncra" -- $@ |
---|
| 2624 | if ( $DEBUG_sys ) ; then |
---|
| 2625 | echo "IGCM_sys_ncra :" $@ |
---|
| 2626 | fi |
---|
[713] | 2627 | |
---|
| 2628 | typeset NB_ESSAI DELAI status i |
---|
| 2629 | # number of tentative |
---|
| 2630 | NB_ESSAI=3 |
---|
| 2631 | # time delay between tentative |
---|
| 2632 | DELAI=2 |
---|
| 2633 | |
---|
| 2634 | i=0 |
---|
| 2635 | while [ $i -lt $NB_ESSAI ] ; do |
---|
| 2636 | ncra $@ > out_rsync 2>&1 |
---|
| 2637 | status=$? |
---|
| 2638 | if [ ${status} -gt 0 ] ; then |
---|
| 2639 | IGCM_debug_Print 2 "IGCM_sys_ncra : error code ${status}" |
---|
| 2640 | cat out_rsync |
---|
| 2641 | \rm out_rsync |
---|
| 2642 | IGCM_debug_Print 2 "IGCM_sys_ncra : ${i}/${NB_ESSAI} sleep ${DELAI} seconds and try again." |
---|
[733] | 2643 | sleep $DELAI |
---|
[713] | 2644 | else |
---|
| 2645 | \rm out_rsync |
---|
| 2646 | break |
---|
| 2647 | fi |
---|
| 2648 | (( i = i + 1 )) |
---|
| 2649 | done |
---|
| 2650 | |
---|
| 2651 | if [ ${status} -gt 0 ] ; then |
---|
| 2652 | echo "IGCM_sys_ncra : ncra error" |
---|
| 2653 | IGCM_debug_Exit "ncra" |
---|
[623] | 2654 | fi |
---|
[622] | 2655 | |
---|
[623] | 2656 | IGCM_debug_PopStack "IGCM_sys_ncra" |
---|
[622] | 2657 | } |
---|
| 2658 | |
---|
| 2659 | function IGCM_sys_ncrcat { |
---|
[623] | 2660 | IGCM_debug_PushStack "IGCM_sys_ncrcat" -- $@ |
---|
| 2661 | if ( $DEBUG_sys ) ; then |
---|
| 2662 | echo "IGCM_sys_ncrcat :" $@ |
---|
| 2663 | fi |
---|
[713] | 2664 | |
---|
[725] | 2665 | typeset NB_ESSAI DELAI status i lastArg |
---|
[713] | 2666 | # number of tentative |
---|
| 2667 | NB_ESSAI=3 |
---|
| 2668 | # time delay between tentative |
---|
| 2669 | DELAI=2 |
---|
| 2670 | |
---|
| 2671 | i=0 |
---|
| 2672 | while [ $i -lt $NB_ESSAI ] ; do |
---|
| 2673 | ncrcat $@ > out_rsync 2>&1 |
---|
| 2674 | status=$? |
---|
| 2675 | if [ ${status} -gt 0 ] ; then |
---|
| 2676 | IGCM_debug_Print 2 "IGCM_sys_ncrcat : error code ${status}" |
---|
| 2677 | cat out_rsync |
---|
| 2678 | \rm out_rsync |
---|
| 2679 | IGCM_debug_Print 2 "IGCM_sys_ncrcat : ${i}/${NB_ESSAI} sleep ${DELAI} seconds and try again." |
---|
[733] | 2680 | sleep $DELAI |
---|
[721] | 2681 | elif [ ! "X$( grep "WARNING Intra-file non-monotonicity" out_rsync )" = "X" ] ; then |
---|
| 2682 | IGCM_debug_Print 2 "IGCM_sys_ncrcat : WARNING Intra-file non-monotonicity" |
---|
| 2683 | cat out_rsync |
---|
[725] | 2684 | # remove files having corrupted time axis |
---|
[734] | 2685 | eval lastArg=\${$#} |
---|
[725] | 2686 | IGCM_debug_Print 2 "IGCM_sys_ncrcat : Delete ${lastArg}" |
---|
| 2687 | \rm ${lastArg} |
---|
[721] | 2688 | \rm out_rsync |
---|
| 2689 | IGCM_debug_Print 2 "IGCM_sys_ncrcat : ${i}/${NB_ESSAI} sleep ${DELAI} seconds and try again." |
---|
[733] | 2690 | sleep $DELAI |
---|
[713] | 2691 | else |
---|
| 2692 | \rm out_rsync |
---|
| 2693 | break |
---|
| 2694 | fi |
---|
| 2695 | (( i = i + 1 )) |
---|
| 2696 | done |
---|
| 2697 | |
---|
| 2698 | if [ ${status} -gt 0 ] ; then |
---|
| 2699 | echo "IGCM_sys_ncrcat : ncrcat error" |
---|
| 2700 | #IGCM_debug_Exit "ncrcat" |
---|
[623] | 2701 | fi |
---|
[622] | 2702 | |
---|
[623] | 2703 | IGCM_debug_PopStack "IGCM_sys_ncrcat" |
---|
[622] | 2704 | } |
---|
| 2705 | |
---|
| 2706 | function IGCM_sys_ncrename { |
---|
[623] | 2707 | IGCM_debug_PushStack "IGCM_sys_ncrename" -- $@ |
---|
| 2708 | if ( $DEBUG_sys ) ; then |
---|
| 2709 | echo "IGCM_sys_ncrename :" $@ |
---|
| 2710 | fi |
---|
[713] | 2711 | |
---|
| 2712 | typeset NB_ESSAI DELAI status i |
---|
| 2713 | # number of tentative |
---|
| 2714 | NB_ESSAI=3 |
---|
| 2715 | # time delay between tentative |
---|
| 2716 | DELAI=2 |
---|
| 2717 | |
---|
| 2718 | i=0 |
---|
| 2719 | while [ $i -lt $NB_ESSAI ] ; do |
---|
| 2720 | ncrename $@ > out_rsync 2>&1 |
---|
| 2721 | status=$? |
---|
| 2722 | if [ ${status} -gt 0 ] ; then |
---|
| 2723 | IGCM_debug_Print 2 "IGCM_sys_ncrename : error code ${status}" |
---|
| 2724 | cat out_rsync |
---|
| 2725 | \rm out_rsync |
---|
| 2726 | IGCM_debug_Print 2 "IGCM_sys_ncrename : ${i}/${NB_ESSAI} sleep ${DELAI} seconds and try again." |
---|
[733] | 2727 | sleep $DELAI |
---|
[713] | 2728 | else |
---|
| 2729 | \rm out_rsync |
---|
| 2730 | break |
---|
| 2731 | fi |
---|
| 2732 | (( i = i + 1 )) |
---|
| 2733 | done |
---|
| 2734 | |
---|
| 2735 | if [ ${status} -gt 0 ] ; then |
---|
| 2736 | echo "IGCM_sys_ncrename : ncrename error" |
---|
| 2737 | IGCM_debug_Exit "ncrename" |
---|
[623] | 2738 | fi |
---|
[622] | 2739 | |
---|
[623] | 2740 | IGCM_debug_PopStack "IGCM_sys_ncrename" |
---|
[622] | 2741 | } |
---|
| 2742 | |
---|
| 2743 | function IGCM_sys_ncwa { |
---|
[623] | 2744 | IGCM_debug_PushStack "IGCM_sys_ncwa" -- $@ |
---|
| 2745 | if ( $DEBUG_sys ) ; then |
---|
| 2746 | echo "IGCM_sys_ncwa :" $@ |
---|
| 2747 | fi |
---|
[713] | 2748 | |
---|
| 2749 | typeset NB_ESSAI DELAI status i |
---|
| 2750 | # number of tentative |
---|
| 2751 | NB_ESSAI=3 |
---|
| 2752 | # time delay between tentative |
---|
| 2753 | DELAI=2 |
---|
| 2754 | |
---|
| 2755 | i=0 |
---|
| 2756 | while [ $i -lt $NB_ESSAI ] ; do |
---|
| 2757 | ncwa $@ > out_rsync 2>&1 |
---|
| 2758 | status=$? |
---|
| 2759 | if [ ${status} -gt 0 ] ; then |
---|
| 2760 | IGCM_debug_Print 2 "IGCM_sys_ncwa : error code ${status}" |
---|
| 2761 | cat out_rsync |
---|
| 2762 | \rm out_rsync |
---|
| 2763 | IGCM_debug_Print 2 "IGCM_sys_ncwa : ${i}/${NB_ESSAI} sleep ${DELAI} seconds and try again." |
---|
[733] | 2764 | sleep $DELAI |
---|
[713] | 2765 | else |
---|
| 2766 | \rm out_rsync |
---|
| 2767 | break |
---|
| 2768 | fi |
---|
| 2769 | (( i = i + 1 )) |
---|
| 2770 | done |
---|
| 2771 | |
---|
| 2772 | if [ ${status} -gt 0 ] ; then |
---|
| 2773 | echo "IGCM_sys_ncwa : ncwa error" |
---|
| 2774 | IGCM_debug_Exit "ncwa" |
---|
[623] | 2775 | fi |
---|
[622] | 2776 | |
---|
[623] | 2777 | IGCM_debug_PopStack "IGCM_sys_ncwa" |
---|
[622] | 2778 | } |
---|
[623] | 2779 | |
---|
| 2780 | ############################################################## |
---|
| 2781 | # CDO OPERATOR |
---|
| 2782 | |
---|
| 2783 | function IGCM_sys_cdo { |
---|
| 2784 | IGCM_debug_PushStack "IGCM_sys_cdo" -- $@ |
---|
| 2785 | if ( $DEBUG_sys ) ; then |
---|
| 2786 | echo "IGCM_sys_cdo :" $@ |
---|
| 2787 | fi |
---|
[713] | 2788 | |
---|
| 2789 | typeset status |
---|
| 2790 | |
---|
| 2791 | \cdo $@ > out_rsync 2>&1 |
---|
| 2792 | status=$? |
---|
| 2793 | if [ ${status} -gt 0 ] ; then |
---|
| 2794 | echo "IGCM_sys_cdo : error code ${status}" |
---|
| 2795 | cat out_rsync |
---|
| 2796 | \rm out_rsync |
---|
[623] | 2797 | IGCM_debug_PopStack "IGCM_sys_cdo" |
---|
| 2798 | return 1 |
---|
| 2799 | else |
---|
| 2800 | IGCM_debug_PopStack "IGCM_sys_cdo" |
---|
| 2801 | return 0 |
---|
| 2802 | fi |
---|
| 2803 | |
---|
| 2804 | IGCM_debug_PopStack "IGCM_sys_cdo" |
---|
| 2805 | } |
---|