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source: trunk/libIGCM/libIGCM_sys/libIGCM_sys_curie.ksh @ 1026

Last change on this file since 1026 was 1026, checked in by sdipsl, 10 years ago
Addon for 3D perturbation mechanism. see #197 Cosmetics SN
Property svn:keywords set to `Revision Author Date`
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1	#!/bin/ksh
2
3	#**************************************************************
4	# Author: Sebastien Denvil, Martial Mancip, Arnaud Caubel
5	# Contact: Arnaud.Caubel__at__lsce.ipsl.fr
6	# $Revision:: $ Revision of last commit
7	# $Author:: $ Author of last commit
8	# $Date:: $ Date of last commit
9	# IPSL (2006)
10	# This software is governed by the CeCILL licence see libIGCM/libIGCM_CeCILL.LIC
11	#
12	#**************************************************************
13
14	#=========================================================
15	# The documentation of this file can be automatically generated
16	# if you use the prefix #D- for comments to be extracted.
17	# Extract with command: cat lib* \| grep "^#D-" \| cut -c "4-"
18	#=========================================================
19
20	#D-#==================================================
21	#D-LibIGCM_sys for Curie
22	#D-#==================================================
23	#D-
24	#D- This ksh library if a layer under some usefull
25	#D-environment variables and shell commands.
26	#D-All those definitions depend on host particularities.
27	#D-It manages a stack mechanism and test validity of operations.
28	#D-All function described bellow must be prefixed by IGCM_sys.
29
30	#====================================================
31	# libIGCM_sys PARAMETERS
32	#====================================================
33
34	#====================================================
35	# set DEBUG_sys to true to output calls of function
36	typeset -r DEBUG_sys=${DEBUG_sys:=true}
37
38	#====================================================
39	# Turn in dry run mode ? (sys_Put_Rest, sys_Put_Out, sys_Get)
40	typeset -r DRYRUN=${DRYRUN:=0}
41
42	# YOU MUST COMPILE YOUR EXE FILES FOR DRYRUN MODE !
43	# -------------------------------------------------------------------------------------
44	# \| DRYRUN= \| Date computations, \| sys_Get \| Exe \| sys_Put_Out; sys_Put_Rest \|
45	# \| \| Cp/Exe/param/files \| \| \| \|
46	# \| \| Chmod Qsub \| \| \| \|
47	# -------------------------------------------------------------------------------------
48	# \| 0 \| yes \| yes \| yes \| yes \|
49	# -------------------------------------------------------------------------------------
50	# \| 1 \| yes \| yes \| yes \| no \|
51	# -------------------------------------------------------------------------------------
52	# \| 2 \| yes \| yes \| no \| no \|
53	# -------------------------------------------------------------------------------------
54	# \| 3 \| yes \| no \| no \| no \|
55	# -------------------------------------------------------------------------------------
56
57	#=====================================================
58	# Global Variables :
59	#=====================================================
60	# Language : "fr" or "en"
61	typeset -r MYLANG="fr"
62
63	#=====================================================
64	# Host and user names
65	# $hostname ou hostname
66	typeset HOST=${HOST:=$( hostname )}
67	# $username ou whoami
68	typeset LOGIN=${LOGIN:=$( whoami )}
69	# $hostname of the MASTER job
70	typeset MASTER=curie
71	# add default project on curie
72	typeset DEFAULT_PROJECT=gen0826
73
74	#D-
75	#D-#==================================================
76	#D-Program used in libIGCM
77	#D-#==================================================
78
79	# Submit command
80	typeset SUBMIT=${SUBMIT:=ccc_msub}
81	# rsync with path
82	typeset -r RSYNC=/usr/bin/rsync
83	# RSYNC_opt args to rsync
84	typeset -r RSYNC_opt="-va"
85	# ie storage filesystem
86	typeset -r STOREHOST=${MASTER}
87
88	#====================================================
89	# Source default environment
90	#====================================================
91	##. /etc/profile
92
93	#====================================================
94	# Set environment tools (ferret, nco, cdo)
95	#====================================================
96	if [ X${TaskType} = Xcomputing ] ; then
97	. /ccc/cont003/home/dsm/p86ipsl/.atlas_env_netcdf4_curie_ksh > /dev/null 2>&1
98	# to run with netcdf 3.6.3 ie compilation done before 17/2/2014
99	# uncomment 2 lines :
100	# module unload netcdf
101	# module load netcdf/3.6.3
102	export PATH=${PATH}:/ccc/cont003/home/dsm/p86ipsl/AddNoise/src_X64_CURIE/bin
103	export PATH=${PATH}:/ccc/cont003/home/dsm/p86ipsl/AddPerturbation/src_X64_CURIE/bin
104	else
105	. /ccc/cont003/home/dsm/p86ipsl/.atlas_env_netcdf4_curie_ksh > /dev/null 2>&1
106	fi
107
108	#====================================================
109	# Specific for ocean additionnal diagnostic
110	export FER_GO="$FER_GO /home/cont003/p86denv/IGCM_POST_UTIL/JNL /home/cont003/p86denv/GRAF /home/cont003/p86denv/GRAF/GO"
111	export FER_PALETTE="$FER_PALETTE /home/cont003/p86denv/GRAF/PALET"
112
113	#====================================================
114	# Host specific DIRECTORIES
115	#====================================================
116
117	# ============ CESIUM START ============ #
118
119	#====================================================
120	#- Mirror libIGCM from titane to cesium if needed
121	#ROOTSYS=$( echo ${libIGCM} \| gawk -F"/" '{print $3}' )
122	#if [ ! ${ROOTSYS} = "home" ] ; then
123	# typeset -r MirrorlibIGCM=${MirrorlibIGCM:=true}
124	#else
125	# typeset -r MirrorlibIGCM=${MirrorlibIGCM:=false}
126	#fi
127
128	#====================================================
129	#- libIGCM_POST
130	#if ( ${MirrorlibIGCM} ) ; then
131	# PATHlibIGCM=$( echo ${libIGCM} \| gawk -F"${LOGIN}/" '{print $2}' \| sed -e "s&/libIGCM&&" )
132	# typeset -r libIGCM_POST=${HOME}/MIRROR/${PATHlibIGCM}/libIGCM
133	#else
134	# typeset -r libIGCM_POST=${libIGCM}
135	#fi
136
137	# ============ CESIUM END ============ #
138
139	#====================================================
140	#- MirrorlibIGCM for frontend
141	typeset -r MirrorlibIGCM=${MirrorlibIGCM:=false}
142
143	#====================================================
144	#- libIGCM_POST for frontend
145	typeset -r libIGCM_POST=${libIGCM}
146
147	#====================================================
148	#- R_EXE (==> BIN_DIR = ${MODIPSL}/bin )
149	typeset -r R_EXE="${MODIPSL}/bin"
150
151	#====================================================
152	#- SUBMIT_DIR : submission dir
153	typeset -x SUBMIT_DIR=${SUBMIT_DIR:=${BRIDGE_MSUB_PWD}}
154
155	#====================================================
156	#- IN
157	typeset -r R_IN=${R_IN:=/ccc/work/cont003/dsm/p86ipsl/IGCM}
158	typeset -r R_IN_ECMWF=${R_IN_ECMWF:=/ccc/work/cont003/dsm/p24data}
159
160	#====================================================
161	#- ARCHIVE (dedicated to large files)
162	typeset ARCHIVE=${CCCSTOREDIR}
163
164	#====================================================
165	#- STORAGE (dedicated to small/medium files)
166	typeset STORAGE=${CCCWORKDIR}
167
168	#====================================================
169	#- R_OUT
170	typeset R_OUT=${ARCHIVE}/IGCM_OUT
171
172	#====================================================
173	#- R_FIG (hosting figures : monitoring and atlas, and/or small files)
174	typeset R_FIG=${STORAGE}/IGCM_OUT
175
176	#====================================================
177	#- R_BUF (ONLY FOR double copy an scratch)
178	typeset -r R_BUF=${SCRATCHDIR}/IGCM_OUT
179
180	#====================================================
181	#- RUN_DIR_PATH : Temporary working directory (=> TMP)
182	typeset -r RUN_DIR_PATH=${RUN_DIR_PATH:=${SCRATCHDIR}/RUN_DIR/${BRIDGE_MSUB_JOBID}_${$}}
183
184	#====================================================
185	#- HOST_MPIRUN_COMMAND
186	typeset -r HOST_MPIRUN_COMMAND=${HOST_MPIRUN_COMMAND:="/usr/bin/time ccc_mprun -E-K1"}
187
188	#====================================================
189	#- Max number of arguments passed to nco operator or demigration command
190	UNIX_MAX_LIMIT=360
191
192	#====================================================
193	#- set PackDefault true on curie
194	PackDefault=true
195
196	#====================================================
197	#- Number of core per node (max number of OpenMP task)
198	NUM_COREPERNODE=8
199
200	#====================================================
201	#- Default number of MPI task for IPSL coupled model
202	#- required for backward compatibility
203	#-
204	DEFAULT_NUM_PROC_OCE=5
205	DEFAULT_NUM_PROC_CPL=1
206	(( DEFAULT_NUM_PROC_ATM = BATCH_NUM_PROC_TOT - DEFAULT_NUM_PROC_OCE - DEFAULT_NUM_PROC_CPL ))
207	DEFAULT_NUM_PROC_TOTAL=${BATCH_NUM_PROC_TOT}
208
209	#D-#==================================================
210	#D-function IGCM_sys_ChangeArchive
211	#D-* Purpose: if SpaceName=TEST everything is stored on SCRATCHDIR
212	#D-* Examples:
213	#D-
214	function IGCM_sys_ChangeArchive {
215	IGCM_debug_PushStack "IGCM_sys_ChangeArchive"
216
217	R_OUT=${SCRATCHDIR}/IGCM_OUT
218	R_FIG=${SCRATCHDIR}/IGCM_OUT
219
220	IGCM_debug_Print 1 "R_OUT has been redefined = ${R_OUT}"
221	IGCM_debug_Print 1 "R_FIG has been redefined = ${R_FIG}"
222
223	IGCM_debug_PopStack "IGCM_sys_ChangeArchive"
224	}
225
226	#D-#==================================================
227	#D-function IGCM_sys_RshMaster
228	#D-* Purpose: Connection to frontend machine.
229	#D-* Examples:
230	#D-
231	function IGCM_sys_RshMaster {
232	IGCM_debug_PushStack "IGCM_sys_RshMaster" $@
233	/bin/ksh <<-EOF
234	export libIGCM=${libIGCM}
235	export DEBUG_debug=${DEBUG_debug}
236	. ${libIGCM}/libIGCM_debug/libIGCM_debug.ksh
237	. ${libIGCM}/libIGCM_card/libIGCM_card.ksh
238	${@}
239	EOF
240	if [ $? -gt 0 ] ; then
241	echo "IGCM_sys_RshMaster : erreur."
242	IGCM_debug_Exit "IGCM_sys_RshMaster"
243	fi
244	IGCM_debug_PopStack "IGCM_sys_RshMaster"
245	}
246
247	#D-#==================================================
248	#D-function IGCM_sys_RshArchive
249	#D-* Purpose: Archive rsh command
250	#D-* Examples:
251	#D-
252	function IGCM_sys_RshArchive {
253	IGCM_debug_PushStack "IGCM_sys_RshArchive" $@
254	/bin/ksh <<-EOF
255	${@}
256	EOF
257	status=$?
258	if [ ${status} -gt 0 ] ; then
259	IGCM_debug_Print 2 "IGCM_sys_RshArchive : command failed error code ${status}"
260	IGCM_debug_Exit "IGCM_sys_RshArchive"
261	fi
262	IGCM_debug_PopStack "IGCM_sys_RshArchive"
263	}
264
265	#D-#==================================================
266	#D-function IGCM_sys_RshArchive_NoError
267	#D-* Purpose: Archive rsh command, without error
268	#D-* used only in monitoring.job
269	#D-* Examples:
270	#D-
271	function IGCM_sys_RshArchive_NoError {
272	IGCM_debug_PushStack "IGCM_sys_RshArchive_NoError" $@
273	/bin/ksh <<-EOF
274	${@} 2> \dev\null
275	EOF
276	IGCM_debug_PopStack "IGCM_sys_RshArchive_NoError"
277	}
278
279	#D-#==================================================
280	#D-function IGCM_sys_RshPost
281	#D-* Purpose: Post-process rsh command
282	#D-* Examples:
283	#D-
284	function IGCM_sys_RshPost {
285	IGCM_debug_PushStack "IGCM_sys_RshPost" $@
286	if ( $DEBUG_sys ) ; then
287	echo "IGCM_sys_RshPost :" $@
288	fi
289	# keep standard input (stdin) for the loop onto temporary file
290	cat >/tmp/tmp_IGCM_sys_RshPost_$$_${LOGNAME}
291
292	/bin/ksh </tmp/tmp_IGCM_sys_RshPost_$$_${LOGNAME}
293	if [ $? -gt 0 ] ; then
294	echo "IGCM_sys_RshPost : erreur."
295	IGCM_debug_Exit "IGCM_sys_RshPost"
296	fi
297	# delete temporary file
298	\rm /tmp/tmp_IGCM_sys_RshPost_$$_${LOGNAME}
299
300	# ============ FRONTEND END ============ #
301
302	# ============ CESIUM START ============ #
303	# typeset NB_ESSAI DELAI status i
304	# if [ "X$( grep rebuild_from tmp_IGCM_sys_RshPost_$$ )" != "X" ] ; then
305	# #little hack so that rebuild submission is done on titane not an cesium
306	#
307	# libIGCM_POST_sed=$( echo $libIGCM_POST \| sed 's/\//\\\//g' )
308	# POST_DIR_sed=$( echo ${POST_DIR} \| sed 's/\//\\\//g' )
309	# sed "s/IGCM_sys_QsubPost/IGCM_sys_Qsub/g" tmp_IGCM_sys_RshPost_$$ > tmp.txt
310	# sed "s/ rebuild_fromWorkdir/ ${libIGCM_POST_sed}\/rebuild_fromWorkdir.job/g" tmp.txt > tmp_IGCM_sys_RshPost_$$
311	# sed "s/ rebuild_fromArchive/ ${libIGCM_POST_sed}\/rebuild_fromArchive.job/g" tmp_IGCM_sys_RshPost_$$ > tmp.txt
312	# sed "s/Script_Post_Output=/Script_Output=${POST_DIR_sed}\//g" tmp.txt > tmp_IGCM_sys_RshPost_$$
313	# \mv tmp.txt tmp_IGCM_sys_RshPost_$$
314	#
315	# echo cat tmp_IGCM_sys_RshPost_$$ AFTER
316	# cat tmp_IGCM_sys_RshPost_$$
317	#
318	# /bin/ksh <tmp_IGCM_sys_RshPost_$$
319	# if [ $? -gt 0 ] ; then
320	# echo "IGCM_sys_RshPost : erreur."
321	# IGCM_debug_Exit "IGCM_sys_RshPost"
322	# fi
323	# # delete temporary file
324	# \rm tmp_IGCM_sys_RshPost_$$
325	#
326	# else
327	# # number of tentative
328	# NB_ESSAI=10
329	# # time delay between tentative
330	# DELAI=10
331	# i=0
332	# while [ $i -ne $NB_ESSAI ] ; do
333	# ssh -t titane996 ssh cesium /bin/ksh <tmp_IGCM_sys_RshPost_$$
334	# status=$?
335	# if [ ${status} -ne 0 ];
336	# then
337	# sleep $DELAI
338	# else
339	# break
340	# fi
341	# let i=$i+1
342	# done
343	# # delete temporary file
344	# \rm tmp_IGCM_sys_RshPost_$$
345	#
346	# if [ ${status} -gt 0 ] ; then
347	# echo "IGCM_sys_RshPost : erreur."
348	# IGCM_debug_Exit "IGCM_sys_RshPost"
349	# fi
350	# fi
351
352	# ============ CESIUM END ============ #
353
354	IGCM_debug_PopStack "IGCM_sys_RshPost"
355	}
356
357	#D-#==================================================
358	#D-function IGCM_sys_SendMail
359	#D-* Purpose: Send mail when simulation is over
360	#D-* Examples:
361	#D-
362	function IGCM_sys_SendMail {
363	IGCM_debug_PushStack "IGCM_sys_SendMail" $@
364
365	if ( $DEBUG_sys ) ; then
366	echo "IGCM_sys_SendMail :" $@
367	fi
368
369	if [ X${1} = XAccounting ] ; then
370	status=Accounting
371	mailText=jobAccounting.mail
372	elif ( ${ExitFlag} ) ; then
373	status=failed
374	mailText=jobEnd.mail
375	else
376	status=completed
377	mailText=jobEnd.mail
378	fi
379
380	# Update selected mail template
381	while read -r line; do
382	eval echo $line >> mail.txt ;
383	done < ${libIGCM}/libIGCM_sys/${mailText}
384
385	if [ ! -z ${config_UserChoices_MailName} ] ; then
386	mail -s "${config_UserChoices_JobName} ${status}" ${config_UserChoices_MailName} < mail.txt
387	elif [ -f ~/.forward ] ; then
388	mail -s "${config_UserChoices_JobName} ${status}" $( cat ~/.forward ) < mail.txt
389	fi
390
391	sleep 10
392	rm -f mail.txt
393
394	IGCM_debug_PopStack "IGCM_sys_SendMail"
395	}
396
397	#D-#==================================================
398	#D-function IGCM_sys_Mkdir
399	#D-* Purpose: Master locale mkdir command
400	#D-* Examples:
401	#D-
402	function IGCM_sys_Mkdir {
403	IGCM_debug_PushStack "IGCM_sys_Mkdir" $@
404	if ( $DEBUG_sys ) ; then
405	echo "IGCM_sys_Mkdir :" $@
406	fi
407	if [ ! -d ${1} ]; then
408	\mkdir -p $1
409	if [ $? -gt 0 ] ; then
410	echo "IGCM_sys_Mkdir : erreur."
411	IGCM_debug_Exit "IGCM_sys_Mkdir"
412	fi
413	fi
414	# vérification :
415	if [ ! -d ${1} ] ; then
416	echo "IGCM_sys_Mkdir : erreur."
417	IGCM_debug_Exit "IGCM_sys_Mkdir"
418	fi
419	IGCM_debug_PopStack "IGCM_sys_Mkdir"
420	}
421
422	#D-#==================================================
423	#D-function IGCM_sys_MkdirArchive
424	#D-* Purpose: Mkdir on Archive
425	#D-* Examples:
426	#D-
427	function IGCM_sys_MkdirArchive {
428	IGCM_debug_PushStack "IGCM_sys_MkdirArchive" $@
429	if ( $DEBUG_sys ) ; then
430	echo "IGCM_sys_MkdirArchive :" $@
431	fi
432	#- creation de repertoire sur le serveur fichier
433	if [ ! -d ${1} ]; then
434	\mkdir -p $1
435	status=$?
436
437	if [ ${status} -gt 0 ] ; then
438	IGCM_debug_Print 2 "IGCM_sys_MkdirArchive : mkdir failed error code ${status}"
439	IGCM_debug_Exit "IGCM_sys_MkdirArchive"
440	fi
441	fi
442	IGCM_debug_PopStack "IGCM_sys_MkdirArchive"
443	}
444
445	#D-#==================================================
446	#D-function IGCM_sys_MkdirWork
447	#D-* Purpose: Mkdir on Work
448	#D-* Examples:
449	#D-
450	function IGCM_sys_MkdirWork {
451	IGCM_debug_PushStack "IGCM_sys_MkdirWork" $@
452	if ( $DEBUG_sys ) ; then
453	echo "IGCM_sys_MkdirWork :" $@
454	fi
455	#- creation de repertoire sur le serveur fichier
456	if [ ! -d ${1} ]; then
457	\mkdir -p $1
458	if [ $? -gt 0 ] ; then
459	echo "IGCM_sys_MkdirWork : erreur."
460	IGCM_debug_Exit "IGCM_sys_MkdirWork"
461	fi
462	fi
463	IGCM_debug_PopStack "IGCM_sys_MkdirWork"
464	}
465
466	#D-#==================================================
467	#D-function IGCM_sys_Cd
468	#D-* Purpose: master cd command
469	#D-* Examples:
470	#D-
471	function IGCM_sys_Cd {
472	IGCM_debug_PushStack "IGCM_sys_Cd" $@
473	if ( $DEBUG_sys ) ; then
474	echo "IGCM_sys_Cd :" $@
475	fi
476	\cd $1
477	if [ $? -gt 0 ] ; then
478	echo "IGCM_sys_Cd : erreur."
479	IGCM_debug_Exit "IGCM_sys_Cd"
480	fi
481	IGCM_debug_PopStack "IGCM_sys_Cd"
482	}
483
484	#D-#==================================================
485	#D-function IGCM_sys_Chmod
486	#D-* Purpose: Chmod
487	#D-* Examples:
488	#D-
489	function IGCM_sys_Chmod {
490	IGCM_debug_PushStack "IGCM_sys_Chmod" -- $@
491	if ( $DEBUG_sys ) ; then
492	echo "IGCM_sys_Chmod :" $@
493	fi
494	\chmod $@
495	if [ $? -gt 0 ] ; then
496	echo "IGCM_sys_Chmod : erreur."
497	IGCM_debug_Exit "IGCM_sys_Chmod"
498	fi
499	IGCM_debug_PopStack "IGCM_sys_Chmod"
500	}
501
502	#D-#==================================================
503	#D-function IGCM_sys_FileSize
504	#D-* Purpose: Filesize
505	#D-* Examples:
506	#D-
507	function IGCM_sys_FileSize {
508	IGCM_debug_PushStack "IGCM_sys_FileSize" $@
509
510	typeset sizeF
511	set +A sizeF -- $( ls -la ${1} )
512	if [ $? -gt 0 ] ; then
513	IGCM_debug_Exit "IGCM_sys_FileSize"
514	fi
515	eval ${2}=${sizeF[4]}
516
517	IGCM_debug_PopStack "IGCM_sys_FileSize"
518	}
519
520	#D-#==================================================
521	#D-function IGCM_sys_TestDir
522	#D-* Purpose: Test Directory that must exists
523	#D-* Examples:
524	#D-
525	function IGCM_sys_TestDir {
526	IGCM_debug_PushStack "IGCM_sys_TestDir" $@
527	if ( $DEBUG_sys ) ; then
528	echo "IGCM_sys_TestDir :" $@
529	fi
530	typeset ExistFlag
531	ExistFlag=$( [ -d $1 ] && echo 0 \|\| echo 1 )
532	IGCM_debug_PopStack "IGCM_sys_TestDir"
533
534	return ${ExistFlag}
535	}
536
537	#D-#==================================================
538	#D-function IGCM_sys_TestDirArchive
539	#D-* Purpose: Test Directory that must exists on Archive
540	#D-* Examples:
541	#D-
542	function IGCM_sys_TestDirArchive {
543	IGCM_debug_PushStack "IGCM_sys_TestDirArchive" $@
544	if ( $DEBUG_sys ) ; then
545	echo "IGCM_sys_TestDirArchive :" $@
546	fi
547	typeset ExistFlag
548	ExistFlag=$( [ -d $1 ] && echo 0 \|\| echo 1 )
549	IGCM_debug_PopStack "IGCM_sys_TestDirArchive"
550	return ${ExistFlag}
551	}
552
553	#D-#==================================================
554	#D-function IGCM_sys_IsFileArchived
555	#D-* Purpose: Test file that must NOT EXISTS on Archive
556	#D-* Examples:
557	#D-
558	function IGCM_sys_IsFileArchived {
559	IGCM_debug_PushStack "IGCM_sys_IsFileArchived" $@
560	if ( $DEBUG_sys ) ; then
561	echo "IGCM_sys_IsFileArchived :" $@
562	fi
563	typeset IsArchivedFlag
564	IsArchivedFlag=$( [ X$( echo $@ \| grep ^\/ccc\/store ) != X ] && echo 0 \|\| echo 1 )
565	IGCM_debug_PopStack "IGCM_sys_IsFileArchived"
566
567	return ${IsArchivedFlag}
568	}
569
570	#D-#==================================================
571	#D-function IGCM_sys_TestFileArchive
572	#D-* Purpose: Test file that must NOT EXISTS on Archive
573	#D-* Examples:
574	#D-
575	function IGCM_sys_TestFileArchive {
576	IGCM_debug_PushStack "IGCM_sys_TestFileArchive" $@
577	typeset ExistFlag
578	ExistFlag=$( [ -f $1 ] && echo 0 \|\| echo 1 )
579	IGCM_debug_PopStack "IGCM_sys_TestFileArchive"
580
581	return ${ExistFlag}
582	}
583
584	#D-#==================================================
585	#D-function IGCM_sys_TestFileBuffer
586	#D-* Purpose: Test file that must NOT EXISTS on Buffer
587	#D-* Examples:
588	#D-
589	function IGCM_sys_TestFileBuffer {
590	IGCM_debug_PushStack "IGCM_sys_TestFileBuffer" $@
591	typeset ExistFlag
592	ExistFlag=$( [ -f $1 ] && echo 0 \|\| echo 1 )
593	IGCM_debug_PopStack "IGCM_sys_TestFileBuffer"
594
595	return ${ExistFlag}
596	}
597
598	#D-#==================================================
599	#D-function IGCM_sys_CountFileArchive
600	#D-* Purpose: Count files on Archive filesystem
601	#D-* Examples:
602	#D-
603	function IGCM_sys_CountFileArchive {
604	IGCM_debug_PushStack "IGCM_sys_CountFileArchive" $@
605	ls ${@} 2>/dev/null \| wc -l
606	if [ $? -gt 0 ] ; then
607	echo "IGCM_sys_CountFileArchive : erreur."
608	fi
609	IGCM_debug_PopStack "IGCM_sys_CountFileArchive"
610	}
611
612	#D-#==================================================
613	#D-function IGCM_sys_CountFileBuffer
614	#D-* Purpose: Count files on Scratch filesystem
615	#D-* Examples:
616	#D-
617	function IGCM_sys_CountFileBuffer {
618	IGCM_debug_PushStack "IGCM_sys_CountFileBuffer" $@
619	ls ${@} 2>/dev/null \| wc -l
620	if [ $? -gt 0 ] ; then
621	echo "IGCM_sys_CountFileBuffer : erreur."
622	fi
623	IGCM_debug_PopStack "IGCM_sys_CountFileBuffer"
624	}
625
626	#D-#==================================================
627	#D-function IGCM_sys_Tree
628	#D-* Purpose: Tree directories with files on ${ARCHIVE}
629	#D-* Examples: IGCM_sys_Tree ${R_IN} ${R_OUT}
630	#D-
631	function IGCM_sys_Tree {
632	IGCM_debug_PushStack "IGCM_sys_Tree" $@
633	if ( $DEBUG_sys ) ; then
634	echo "IGCM_sys_Tree :" $@
635	fi
636
637	\ls -lR ${@}
638
639	IGCM_debug_PopStack "IGCM_sys_Tree"
640	}
641
642	#D-#==================================================
643	#D-function IGCM_sys_Tar
644	#D-* Purpose: master tar command
645	#D-* Examples:
646	#D-
647	function IGCM_sys_Tar {
648	IGCM_debug_PushStack "IGCM_sys_Tar" $@
649	if ( $DEBUG_sys ) ; then
650	echo "IGCM_sys_Tar :" $@
651	fi
652	\tar cf $@
653	if [ $? -gt 0 ] ; then
654	echo "IGCM_sys_Tar : erreur."
655	IGCM_debug_Exit "IGCM_sys_Tar"
656	fi
657	IGCM_debug_PopStack "IGCM_sys_Tar"
658	}
659
660	#D-#==================================================
661	#D-function IGCM_sys_UnTar
662	#D-* Purpose: master un-tar command
663	#D-* Examples:
664	#D-
665	function IGCM_sys_UnTar {
666	IGCM_debug_PushStack "IGCM_sys_UnTar" $@
667	if ( $DEBUG_sys ) ; then
668	echo "IGCM_sys_UnTar :" $@
669	fi
670	\tar xvf $1
671	if [ $? -gt 0 ] ; then
672	echo "IGCM_sys_UnTar : erreur."
673	IGCM_debug_Exit "IGCM_sys_UnTar"
674	fi
675	IGCM_debug_PopStack "IGCM_sys_UnTar"
676	}
677
678	#D-#==================================================
679	#D-function IGCM_sys_Qsub
680	#D-* Purpose: Qsub new job
681	#D-* Examples:
682	#D-
683	function IGCM_sys_Qsub {
684	IGCM_debug_PushStack "IGCM_sys_Qsub" $@
685	if ( $DEBUG_sys ) ; then
686	echo "IGCM_sys_Qsub :" $@
687	fi
688	typeset options status
689	options="-o ${SUBMIT_DIR}/${Script_Output} -e ${SUBMIT_DIR}/${Script_Output}"
690
691	/usr/bin/ccc_msub ${options} $1 > /tmp/out_command.$$ 2>&1
692	status=$?
693
694	cat /tmp/out_command.$$
695	if [ ${status} -gt 0 ] ; then
696	IGCM_debug_Print 2 "IGCM_sys_Qsub ${options} $1 : error code ${status}"
697	IGCM_debug_Exit "IGCM_sys_Qsub"
698	else
699	JobID=$( gawk {'print $4'} /tmp/out_command.$$ )
700	fi
701	IGCM_debug_PopStack "IGCM_sys_Qsub"
702	}
703
704	#D-#==================================================
705	#D-function IGCM_sys_QsubPost
706	#D-* Purpose: Qsub new job on scalaire
707	#D-* Examples:
708	#D-
709	function IGCM_sys_QsubPost {
710	IGCM_debug_PushStack "IGCM_sys_QsubPost" $@
711	if ( $DEBUG_sys ) ; then
712	echo "IGCM_sys_QsubPost :" $@
713	fi
714	typeset options status
715	MY_PROJECT=$(echo ${BRIDGE_MSUB_PROJECT:=${DEFAULT_PROJECT}} \| cut -d@ -f1 )
716	options="-Q normal -A ${MY_PROJECT} -o ${POST_DIR}/${Script_Post_Output}.out -e ${POST_DIR}/${Script_Post_Output}.out"
717
718	/usr/bin/ccc_msub ${options} ${libIGCM_POST}/$1.job > /tmp/out_command.$$ 2>&1
719	status=$?
720
721	cat /tmp/out_command.$$
722	if [ ${status} -gt 0 ] ; then
723	IGCM_debug_Print 2 "IGCM_sys_QsubPost ${options} ${libIGCM_POST}/$1.job : error code ${status}"
724	IGCM_debug_Exit "IGCM_sys_QsubPost"
725	else
726	JobID=$( gawk {'print $4'} /tmp/out_command.$$ )
727	fi
728	IGCM_debug_PopStack "IGCM_sys_QsubPost"
729	}
730
731	#D-*************************
732	#D- File transfer functions
733	#D-*************************
734	#D-
735
736	#D-#==================================================
737	#D-function IGCM_sys_Rsync_out
738	#D-* Purpose: treat return val of rsync
739	#D-* Examples: IGCM_sys_Rsync_out out_RET_rsync
740	#D- Error values and explanations can depend on your system version.
741	function IGCM_sys_Rsync_out {
742	status=$1
743	if [ ! $status ] ; then
744	echo "rsync error !"
745	fi
746
747	if [ $MYLANG = "fr" ]; then
748	case $status in
749	0) return ;;
750	1) echo "Erreur de rsync ; RERR_SYNTAX : "
751	echo "Erreur de syntaxe ou d'utilisation."
752	return;;
753	2) echo "Erreur de rsync ; RERR_PROTOCOL : "
754	echo "Incompatibilité de protocole."
755	return;;
756	3) echo "Erreur de rsync ; RERR_FILESELECT 3"
757	echo "Erreurs lors de la sélection des fichiers d'entrée sortie et"
758	echo "répertoires"
759	return;;
760	4) echo "Erreur de rsync ; RERR_UNSUPPORTED"
761	echo "Action demandée non supportée : une tentative de manipulation de"
762	echo "fichiers 64-bits sur une plate-forme qui ne les supporte pas a"
763	echo "été faite ; ou une option qui est supportée par le client mais"
764	echo "pas par le serveur a été spécifiée."
765	return;;
766	10) echo "Erreur de rsync ; RERR_SOCKETIO"
767	echo "Erreur dans le socket d'entrée sortie"
768	return;;
769	11) echo "Erreur de rsync ; RERR_FILEIO"
770	echo "Erreur d'entrée sortie fichier"
771	return;;
772	12) echo "Erreur de rsync ; RERR_STREAMIO"
773	echo "Erreur dans flux de donnée du protocole rsync"
774	return;;
775	13) echo "Erreur de rsync ; RERR_MESSAGEIO"
776	echo "Erreur avec les diagnostics du programme"
777	return;;
778	14) echo "Erreur de rsync ; RERR_IPC"
779	echo "Erreur dans le code IPC"
780	return;;
781	20) echo "Erreur de rsync ; RERR_SIGNAL"
782	echo "SIGUSR1 ou SIGINT reçu"
783	return;;
784	21) echo "Erreur de rsync ; RERR_WAITCHILD"
785	echo "Une erreur retournée par waitpid()"
786	return;;
787	22) echo "Erreur de rsync ; RERR_MALLOC"
788	echo "Erreur lors de l'allocation des tampons de mémoire de coeur"
789	return;;
790	23) echo ""
791	echo "Erreur fichier inexistant"
792	return;;
793	30) echo "Erreur de rsync ; RERR_TIMEOUT"
794	echo "Temps d'attente écoulé dans l'envoi/réception de données"
795	return;;
796	*) echo "Erreur de rsync : code de retour de rsync inconnu :" $status
797	return;;
798	esac
799	elif [ $MYLANG = "en" ] ; then
800	case $status in
801	0) return;;
802	1) echo "rsync error : Syntax or usage error "
803	return;;
804	2) echo "rsync error : Protocol incompatibility "
805	return;;
806	3) echo "rsync error : Errors selecting input/output files, dirs"
807	return;;
808	4) echo "rsync error : Requested action not supported: an attempt"
809	echo "was made to manipulate 64-bit files on a platform that cannot support"
810	echo "them; or an option was specified that is supported by the client and"
811	echo "not by the server."
812	return;;
813	5) echo "rsync error : Error starting client-server protocol"
814	return;;
815	10) echo "rsync error : Error in socket I/O "
816	return;;
817	11) echo "rsync error : Error in file I/O "
818	return;;
819	12) echo "rsync error : Error in rsync protocol data stream "
820	return;;
821	13) echo "rsync error : Errors with program diagnostics "
822	return;;
823	14) echo "rsync error : Error in IPC code "
824	return;;
825	20) echo "rsync error : Received SIGUSR1 or SIGINT "
826	return;;
827	21) echo "rsync error : Some error returned by waitpid() "
828	return;;
829	22) echo "rsync error : Error allocating core memory buffers "
830	return;;
831	23) echo "rsync error : Partial transfer due to error"
832	return;;
833	24) echo "rsync error : Partial transfer due to vanished source files"
834	return;;
835	30) echo "rsync error : Timeout in data send/receive "
836	return;;
837	*) echo "rsync error : return code of rsync unknown :" $status
838	return;;
839	esac
840	else
841	echo "unknown language $MYLANG."
842	return
843	fi
844	}
845
846	#D-#==================================================
847	#D-function IGCM_sys_Miror_libIGCM
848	#D-* Purpose: Mirror libIGCM PATH and lib to frontend
849	#D-* Examples:
850	#D-
851	function IGCM_sys_Mirror_libIGCM {
852	IGCM_debug_PushStack "IGCM_sys_Mirror_libIGCM"
853	if ( $DEBUG_sys ) ; then
854	echo "IGCM_sys_Mirror_libIGCM"
855	fi
856
857	typeset status
858
859	mkdir -p ${HOME}/MIRROR/${PATHlibIGCM}
860
861	echo ${RSYNC} ${RSYNC_opt} ${libIGCM} ${HOME}/MIRROR/${PATHlibIGCM} > /tmp/out_command.$$ 2>&1
862	${RSYNC} ${RSYNC_opt} ${libIGCM} ${HOME}/MIRROR/${PATHlibIGCM} >> /tmp/out_command.$$ 2>&1
863	status=$?
864
865	if [ ${status} -gt 0 ] ; then
866	echo "IGCM_sys_Mirror_libIGCM Warning : no libIGCM on frontend."
867	cat /tmp/out_command.$$
868	fi
869	IGCM_debug_PopStack "IGCM_sys_Mirror_libIGCM"
870	}
871
872	#D-#==================================================
873	#D-function IGCM_sys_Cp
874	#D-* Purpose: generic cp
875	#D-* Examples:
876	#D-
877	function IGCM_sys_Cp {
878	IGCM_debug_PushStack "IGCM_sys_Cp" $@
879	if ( $DEBUG_sys ) ; then
880	echo "IGCM_sys_Cp :" $@
881	fi
882
883	typeset status
884
885	echo cp $@ > /tmp/out_command.$$ 2>&1
886	\cp $@ >> /tmp/out_command.$$ 2>&1
887	status=$?
888
889	if [ ${status} -gt 0 ] ; then
890	echo "IGCM_sys_Cp : error code ${status}"
891	cat /tmp/out_command.$$
892	IGCM_debug_Exit "IGCM_sys_Cp"
893	else
894	\rm /tmp/out_command.$$
895	fi
896	IGCM_debug_PopStack "IGCM_sys_Cp"
897	}
898
899	#D-#==================================================
900	#D-function IGCM_sys_Rm
901	#D-* Purpose: generic rm
902	#D-* Examples:
903	#D-
904	function IGCM_sys_Rm {
905	IGCM_debug_PushStack "IGCM_sys_Rm" -- $@
906	if ( $DEBUG_sys ) ; then
907	echo "IGCM_sys_Rm :" $@
908	fi
909
910	typeset status
911
912	echo rm $@ > /tmp/out_command.$$ 2>&1
913	\rm $@ >> /tmp/out_command.$$ 2>&1
914	status=$?
915
916	if [ ${status} -gt 0 ] ; then
917	echo "IGCM_sys_Rm : error code ${status}"
918	cat /tmp/out_command.$$
919	IGCM_debug_Exit "IGCM_sys_Rm"
920	else
921	\rm /tmp/out_command.$$
922	fi
923	IGCM_debug_PopStack "IGCM_sys_Rm"
924	}
925
926	#D-#==================================================
927	#D-function IGCM_sys_RmRunDir
928	#D-* Purpose: rm tmpdir (dummy function most of the time batch
929	#D- scheduler will do the job)
930	#D-* Examples:
931	#D-
932	function IGCM_sys_RmRunDir {
933	IGCM_debug_PushStack "IGCM_sys_RmRunDir" -- $@
934	if ( $DEBUG_sys ) ; then
935	echo "IGCM_sys_RmRunDir :" $@
936	fi
937
938	typeset status
939
940	echo rm $@ > /tmp/out_command.$$ 2>&1
941	\rm $@ >> /tmp/out_command.$$ 2>&1
942	status=$?
943
944	if [ ${status} -gt 0 ] ; then
945	echo "IGCM_sys_RmRunDir : rm error code is ${status}."
946	cat /tmp/out_command.$$
947	IGCM_debug_Exit "IGCM_sys_RmRunDir"
948	else
949	\rm /tmp/out_command.$$
950	fi
951	IGCM_debug_PopStack "IGCM_sys_RmRunDir"
952	}
953
954	#D-#==================================================
955	#D-function IGCM_sys_Mv
956	#D-* Purpose: generic move
957	#D-* Examples:
958	#D-
959	function IGCM_sys_Mv {
960	IGCM_debug_PushStack "IGCM_sys_Mv" $@
961	if ( $DEBUG_sys ) ; then
962	echo "IGCM_sys_Mv :" $@
963	fi
964
965	if [ $DRYRUN = 0 ]; then
966
967	typeset status
968
969	echo mv $@ > /tmp/out_command.$$ 2>&1
970	\mv $@ >> /tmp/out_command.$$ 2>&1
971	status=$?
972
973	if [ ${status} -gt 0 ] ; then
974	echo "IGCM_sys_Mv : error code ${status}"
975	cat /tmp/out_command.$$
976	IGCM_debug_Exit "IGCM_sys_Mv"
977	else
978	\rm /tmp/out_command.$$
979	fi
980	fi
981
982	IGCM_debug_PopStack "IGCM_sys_Mv"
983	}
984
985	#D-#==================================================
986	#D-function IGCM_sys_Put_Dir
987	#D-* Purpose: Copy a complete directory on $(ARCHIVE)
988	#D-* Examples:
989	#D-
990	function IGCM_sys_Put_Dir {
991	IGCM_debug_PushStack "IGCM_sys_Put_Dir" $@
992	if ( $DEBUG_sys ) ; then
993	echo "IGCM_sys_Put_Dir :" $@
994	fi
995	if [ $DRYRUN = 0 ]; then
996	if [ ! -d ${1} ] ; then
997	echo "WARNING : IGCM_sys_Put_Dir ${1} DOES NOT EXIST ."
998	IGCM_debug_PopStack "IGCM_sys_Put_Dir"
999	return
1000	fi
1001
1002	typeset status
1003
1004	# Only if we use rsync
1005	#IGCM_sys_TestDirArchive $( dirname $2 )
1006	#
1007	#USUAL WAY
1008	\cp -r $1 $2 > /tmp/out_command.$$ 2>&1
1009	status=$?
1010
1011	if [ ${status} -gt 0 ] ; then
1012	IGCM_debug_Print 2 "IGCM_sys_Put_Dir : cp failed error code ${status}"
1013	cat /tmp/out_command.$$
1014	IGCM_debug_Exit "IGCM_sys_Put_Dir"
1015	else
1016	\rm /tmp/out_command.$$
1017	fi
1018	fi
1019	IGCM_debug_PopStack "IGCM_sys_Put_Dir"
1020	}
1021
1022	#D-#==================================================
1023	#D-function IGCM_sys_Get_Dir
1024	#D-* Purpose: Copy a complete directory from ${ARCHIVE}
1025	#D-* Examples:
1026	#D-
1027	function IGCM_sys_Get_Dir {
1028	IGCM_debug_PushStack "IGCM_sys_Get_Dir" $@
1029	if ( $DEBUG_sys ) ; then
1030	echo "IGCM_sys_Get_Dir :" $@
1031	fi
1032	if [ $DRYRUN = 0 ]; then
1033	# if [ ! -d ${1} ] ; then
1034	# echo "WARNING : IGCM_sys_Get_Dir ${1} DOES NOT EXIST ."
1035	# IGCM_debug_PopStack "IGCM_sys_Get_Dir"
1036	# return
1037	# fi
1038
1039	typeset NB_ESSAI DELAI status i
1040	# number of tentative
1041	NB_ESSAI=3
1042	# time delay between tentative
1043	DELAI=2
1044
1045	# Only if we use rsync
1046	#IGCM_sys_TestDirArchive $( dirname $2 )
1047	#
1048	# USUAL WAY
1049	# add 'ccc_hsm get' (to demigrate all offline files) to reduce time of this command :
1050	ccc_hsm get -r $1
1051
1052	i=0
1053	while [ $i -lt $NB_ESSAI ] ; do
1054	\cp -ur $1 $2 >> /tmp/out_command.$$ 2>&1
1055	status=$?
1056	if [ ${status} -gt 0 ] ; then
1057	IGCM_debug_Print 2 "IGCM_sys_Get_Dir : cp failed error code ${status} ${i}/${NB_ESSAI}"
1058	IGCM_debug_Print 2 "IGCM_sys_Get_Dir : sleep ${DELAI} seconds and try again."
1059	sleep $DELAI
1060	else
1061	break
1062	fi
1063	(( i = i + 1 ))
1064	done
1065
1066	if [ ${status} -gt 0 ] ; then
1067	echo "IGCM_sys_Get_Dir : error."
1068	cat /tmp/out_command.$$
1069	IGCM_debug_Exit "IGCM_sys_Get_Dir"
1070	else
1071	\rm /tmp/out_command.$$
1072	fi
1073	fi
1074	IGCM_debug_PopStack "IGCM_sys_Get_Dir"
1075	}
1076
1077	#D-#==================================================
1078	#D-function IGCM_sys_Get_Master
1079	#D-* Purpose: Copy a complete directory from MASTER filesystem
1080	#D-* Examples:
1081	#D-
1082	function IGCM_sys_Get_Master {
1083	IGCM_debug_PushStack "IGCM_sys_Get_Master" $@
1084	if ( $DEBUG_sys ) ; then
1085	echo "IGCM_sys_Get_Master :" $@
1086	fi
1087	if [ $DRYRUN = 0 ]; then
1088	if ( [ ! -d ${1} ] && [ ! -f ${1} ] ) ; then
1089	echo "WARNING : IGCM_sys_Get_Master ${1} DOES NOT EXIST ."
1090	IGCM_debug_PopStack "IGCM_sys_Get_Master"
1091	return
1092	fi
1093
1094	typeset NB_ESSAI DELAI status i
1095	# number of tentative
1096	NB_ESSAI=3
1097	# time delay between tentative
1098	DELAI=2
1099
1100	i=0
1101	while [ $i -lt $NB_ESSAI ] ; do
1102	\cp -urL $1 $2 > /tmp/out_command.$$ 2>&1
1103	status=$?
1104	if [ ${status} -gt 0 ]; then
1105	IGCM_debug_Print 2 "IGCM_sys_Get_Master : cp failed error code ${status} ${i}/${NB_ESSAI}"
1106	IGCM_debug_Print 2 "IGCM_sys_Get_Master : sleep ${DELAI} seconds and try again."
1107	sleep $DELAI
1108	else
1109	break
1110	fi
1111	(( i = i + 1 ))
1112	done
1113
1114	if [ ${status} -gt 0 ] ; then
1115	echo "IGCM_sys_Get_Master : error."
1116	cat /tmp/out_command.$$
1117	IGCM_debug_Exit "IGCM_sys_Get_Master"
1118	else
1119	\rm /tmp/out_command.$$
1120	fi
1121	fi
1122	IGCM_debug_PopStack "IGCM_sys_Get_Master"
1123	}
1124
1125	#====================================================
1126	#- Call IGCM_sys_Mirror_libIGCM now !
1127	if ( $MirrorlibIGCM ) ; then
1128	IGCM_sys_Mirror_libIGCM
1129	fi
1130
1131	#D-#==================================================
1132	#D-function IGCM_sys_Put_Rest
1133	#D-* Purpose: Put computied restarts on ${ARCHIVE}.
1134	#D- File and target directory must exist.
1135	#D-* Examples:
1136	#D-
1137	function IGCM_sys_Put_Rest {
1138	IGCM_debug_PushStack "IGCM_sys_Put_Rest" $@
1139	if ( $DEBUG_sys ) ; then
1140	echo "IGCM_sys_Put_Rest :" $@
1141	fi
1142	if [ $DRYRUN = 0 ]; then
1143	if [ ! -f ${1} ] ; then
1144	echo "ERROR : IGCM_sys_Put_Rest ${1} DOES NOT EXIST ."
1145	IGCM_debug_Exit "IGCM_sys_Put_Rest"
1146	fi
1147
1148	typeset status
1149	#
1150	# USUAL WAY
1151	\cp $1 $2 > /tmp/out_command.$$ 2>&1
1152	status=$?
1153
1154	# #RSYNC WITH NETWORK SSH CALL
1155	# echo ${RSYNC} ${RSYNC_opt} -e ssh ${RUN_DIR}/$1 ${STOREHOST}:${2} > /tmp/out_command.$$ 2>&1
1156	# ${RSYNC} ${RSYNC_opt} -e ssh ${RUN_DIR}/$1 ${STOREHOST}:${2} >> /tmp/out_command.$$ 2>&1
1157
1158	# #RSYNC WITH NFS USE
1159	# echo ${RSYNC} ${RSYNC_opt} ${RUN_DIR}/$1 ${2} > /tmp/out_command.$$ 2>&1
1160	# ${RSYNC} ${RSYNC_opt} ${RUN_DIR}/$1 ${2} >> /tmp/out_command.$$ 2>&1
1161
1162	# status=$?
1163	# IGCM_sys_Rsync_out $status
1164
1165	# ${libIGCM}/libIGCM_sys/IGCM_analyse_rsync_out.awk /tmp/out_command.$$
1166	# (( status=status+$? ))
1167
1168	if [ ${status} -gt 0 ] ; then
1169	echo "IGCM_sys_Put_Rest : cp failed error code ${status}"
1170	[ -f ${1} ] && ls -l ${1}
1171	[ -f ${2} ] && ls -l ${2}
1172	[ -f ${2}/${1} ] && ls -l ${2}/${1}
1173	cat /tmp/out_command.$$
1174	IGCM_debug_Exit "IGCM_sys_Put_Rest"
1175	else
1176
1177	if [ X${JobType} = XRUN ] ; then
1178	[ -f ${2} ] && IGCM_sys_Chmod 444 ${2}
1179	[ -f ${2}/${1} ] && IGCM_sys_Chmod 444 ${2}/${1}
1180	fi
1181
1182	\rm /tmp/out_command.$$
1183	fi
1184	fi
1185	IGCM_debug_PopStack "IGCM_sys_Put_Rest"
1186	}
1187
1188	#D-#==================================================
1189	#D-function IGCM_sys_PutBuffer_Rest
1190	#D-* Purpose: Put computied restarts on ${SCRATCHDIR}.
1191	#D- File and target directory must exist.
1192	#D-* Examples:
1193	#D-
1194	function IGCM_sys_PutBuffer_Rest {
1195	IGCM_debug_PushStack "IGCM_sys_PutBuffer_Rest" $@
1196	if ( $DEBUG_sys ) ; then
1197	echo "IGCM_sys_PutBuffer_Rest :" $@
1198	fi
1199	if [ $DRYRUN = 0 ]; then
1200	if [ ! -f ${1} ] ; then
1201	echo "ERROR : IGCM_sys_PutBuffer_Rest ${1} DOES NOT EXIST ."
1202	IGCM_debug_Exit "IGCM_sys_PutBuffer_Rest"
1203	fi
1204
1205	typeset status
1206	#
1207	# USUAL WAY
1208	\cp $1 $2 > /tmp/out_command.$$ 2>&1
1209	status=$?
1210
1211	if [ ${status} -gt 0 ] ; then
1212	echo "IGCM_sys_PutBuffer_Rest : error code ${status}"
1213	[ -f ${2} ] && ls -l ${2}
1214	[ -f ${2}/${1} ] && ls -l ${2}/${1}
1215	cat /tmp/out_command.$$
1216	IGCM_debug_Exit "IGCM_sys_PutBuffer_Rest"
1217	else
1218
1219	if [ X${JobType} = XRUN ] ; then
1220	[ -f ${2} ] && IGCM_sys_Chmod 444 ${2}
1221	[ -f ${2}/${1} ] && IGCM_sys_Chmod 444 ${2}/${1}
1222	fi
1223
1224	\rm /tmp/out_command.$$
1225	fi
1226	fi
1227	IGCM_debug_PopStack "IGCM_sys_PutBuffer_Rest"
1228	}
1229
1230	#D-#==================================================
1231	#D-function IGCM_sys_PrepareTaredRestart
1232	#D-* Purpose: Prepare tared restart to be access by computing job. Identity here.
1233	#D-* Examples:
1234	#D-
1235	function IGCM_sys_PrepareTaredRestart {
1236	IGCM_debug_PushStack "IGCM_sys_PrepareTaredRestart" $@
1237	if [ $DRYRUN = 0 ]; then
1238	[ ! -f $( basename $1 ) ] && IGCM_sys_Get $1 .
1239	fi
1240	IGCM_debug_PopStack "IGCM_sys_PrepareTaredRestart"
1241	}
1242
1243	#D-#==================================================
1244	#D-function IGCM_sys_Put_Out
1245	#D-* Purpose: Copy a file on ${ARCHIVE} after having chmod it in readonly
1246	#D-* Examples:
1247	#D-
1248	function IGCM_sys_Put_Out {
1249	IGCM_debug_PushStack "IGCM_sys_Put_Out" $@
1250	if ( $DEBUG_sys ) ; then
1251	echo "IGCM_sys_Put_Out :" $@
1252	fi
1253
1254	typeset NB_ESSAI DELAI status i exist skip
1255
1256	# number of tentative
1257	NB_ESSAI=3
1258	# time delay between tentative
1259	DELAI=2
1260
1261	if [ $DRYRUN = 0 ]; then
1262	if [ ! -f ${1} ] ; then
1263	echo "WARNING : IGCM_sys_Put_Out ${1} DOES NOT EXIST ."
1264	IGCM_debug_PopStack "IGCM_sys_Put_Out"
1265	return 1
1266	fi
1267	#
1268	IGCM_sys_MkdirArchive $( dirname $2 )
1269	#
1270
1271	#=====================================================
1272	# COMMENT OUT DOUBLE COPY ON SCRATCHDIR
1273	#=====================================================
1274
1275	#echo ${2} \| grep "${R_OUT}" > /dev/null 2>&1
1276	#if [ $? -eq 0 ] ; then
1277	# typeset WORKPATH FILEPATH
1278	# WORKPATH=$( dirname $2 \| sed -e "s\|${R_OUT}\|${R_BUF}\|" )
1279	# IGCM_sys_MkdirWork ${WORKPATH}
1280	# FILEPATH=${WORKPATH}/$( basename $2 )
1281	# #
1282	# IGCM_sys_Cp ${1} ${FILEPATH}
1283	#fi
1284
1285	exist=false
1286	skip=false
1287	if [ -f $2 ] ; then
1288	IGCM_debug_Print 1 "$2 already exist"
1289	#dmget $2
1290	ccc_hsm get $2
1291	exist=true
1292	if [ "X$( diff $1 $2 )" = X ] ; then
1293	IGCM_debug_Print 2 "$1 and $2 are the same file, we skip the copy"
1294	skip=true
1295	else
1296	IGCM_debug_Print 2 "$1 and $2 are not the same file, we force the copy"
1297	skip=false
1298	fi
1299	fi
1300	#
1301	if ( [ X${exist} = Xtrue ] && [ X${skip} = Xfalse ] ) ; then
1302	IGCM_sys_Chmod u+w $2
1303	fi
1304
1305	if [ X${skip} = Xfalse ] ; then
1306	i=0
1307	while [ $i -lt $NB_ESSAI ] ; do
1308	# USUAL WAY
1309	\cp $1 $2 > /tmp/out_command.$$ 2>&1
1310	status=$?
1311	if [ ${status} -gt 0 ]; then
1312	IGCM_debug_Print 2 "IGCM_sys_Put_Out : cp failed error code ${status} ${i}/${NB_ESSAI}"
1313	IGCM_debug_Print 2 "IGCM_sys_Put_Out : sleep ${DELAI} seconds and try again."
1314	[ -f ${1} ] && ls -l ${1}
1315	[ -f ${2} ] && ls -l ${2}
1316	[ -f ${2}/${1} ] && ls -l ${2}/${1}
1317	sleep $DELAI
1318	else
1319	break
1320	fi
1321	(( i = i + 1 ))
1322	done
1323	fi
1324
1325	# #RSYNC WITH NETWORK SSH CALL
1326	# echo ${RSYNC} ${RSYNC_opt} -e ssh ${RUN_DIR}/$1 ${STOREHOST}:${2} > /tmp/out_command.$$ 2>&1
1327	# ${RSYNC} ${RSYNC_opt} -e ssh ${RUN_DIR}/$1 ${STOREHOST}:${2} >> /tmp/out_command.$$ 2>&1
1328
1329	# #RSYNC WITH NFS USE
1330	# echo ${RSYNC} ${RSYNC_opt} ${RUN_DIR}/$1 ${2} > /tmp/out_command.$$ 2>&1
1331	# ${RSYNC} ${RSYNC_opt} ${RUN_DIR}/$1 ${2} >> /tmp/out_command.$$ 2>&1
1332
1333	# status=$?
1334	# IGCM_sys_Rsync_out $status
1335
1336	# ${libIGCM}/libIGCM_sys/IGCM_analyse_rsync_out.awk /tmp/out_command.$$
1337	# (( status=status+$? ))
1338
1339	if [ ${status} -gt 0 ] ; then
1340	echo "IGCM_sys_Put_Out : error."
1341	[ -f ${1} ] && ls -l ${1}
1342	[ -f ${2} ] && ls -l ${2}
1343	[ -f ${2}/${1} ] && ls -l ${2}/${1}
1344	cat /tmp/out_command.$$
1345	IGCM_debug_Exit "IGCM_sys_Put_Out"
1346	else
1347
1348	if [ X${JobType} = XRUN ] ; then
1349	if [ X${3} = X ] ; then
1350	[ -f ${2} ] && IGCM_sys_Chmod 444 ${2}
1351	[ -f ${2}/${1} ] && IGCM_sys_Chmod 444 ${2}/${1}
1352	fi
1353	fi
1354
1355	\rm /tmp/out_command.$$
1356	fi
1357	fi
1358	IGCM_debug_PopStack "IGCM_sys_Put_Out"
1359	return 0
1360	}
1361
1362	#D-#==================================================
1363	#D-function IGCM_sys_PutBuffer_Out
1364	#D-* Purpose: Copy a file on ${SCRATCHDIR} after having chmod it in readonly
1365	#D-* Examples:
1366	#D-
1367	function IGCM_sys_PutBuffer_Out {
1368	IGCM_debug_PushStack "IGCM_sys_PutBuffer_Out" $@
1369	if ( $DEBUG_sys ) ; then
1370	echo "IGCM_sys_PutBuffer_Out :" $@
1371	fi
1372
1373	typeset NB_ESSAI DELAI status i exist skip
1374
1375	# number of tentative
1376	NB_ESSAI=3
1377	# time delay between tentative
1378	DELAI=2
1379
1380	if [ $DRYRUN = 0 ]; then
1381	if [ ! -f ${1} ] ; then
1382	echo "WARNING : IGCM_sys_PutBuffer_Out ${1} DOES NOT EXIST ."
1383	IGCM_debug_PopStack "IGCM_sys_PutBuffer_Out"
1384	return 1
1385	fi
1386	#
1387	IGCM_sys_Mkdir $( dirname $2 )
1388	#
1389
1390	exist=false
1391	skip=false
1392	if [ -f $2 ] ; then
1393	IGCM_debug_Print 1 "$2 already exist"
1394	exist=true
1395	if [ "X$( diff $1 $2 )" = X ] ; then
1396	IGCM_debug_Print 2 "$1 and $2 are the same file, we skip the copy"
1397	status=0
1398	skip=true
1399	else
1400	IGCM_debug_Print 2 "$1 and $2 are not the same file, we force the copy"
1401	skip=false
1402	fi
1403	fi
1404	#
1405	if ( [ X${exist} = Xtrue ] && [ X${skip} = Xfalse ] ) ; then
1406	IGCM_sys_Chmod u+w $2
1407	fi
1408
1409	if [ X${skip} = Xfalse ] ; then
1410	i=0
1411	while [ $i -lt $NB_ESSAI ] ; do
1412	# USUAL WAY
1413	\cp $1 $2 > /tmp/out_command.$$ 2>&1
1414	status=$?
1415	if [ ${status} -gt 0 ]; then
1416	IGCM_debug_Print 2 "IGCM_sys_PutBuffer_Out : cp failed error code ${status} ${i}/${NB_ESSAI}"
1417	IGCM_debug_Print 2 "IGCM_sys_PutBuffer_Out : sleep ${DELAI} seconds and try again."
1418	[ -f ${2} ] && ls -l ${2}
1419	[ -f ${2}/${1} ] && ls -l ${2}/${1}
1420	sleep $DELAI
1421	else
1422	break
1423	fi
1424	(( i = i + 1 ))
1425	done
1426	fi
1427
1428	if [ ${status} -gt 0 ] ; then
1429	echo "IGCM_sys_PutBuffer_Out : error."
1430	[ -f ${2} ] && ls -l ${2}
1431	[ -f ${2}/${1} ] && ls -l ${2}/${1}
1432	cat /tmp/out_command.$$
1433	IGCM_debug_Exit "IGCM_sys_PutBuffer_Out"
1434	else
1435
1436	if [ X${JobType} = XRUN ] ; then
1437	if [ X${3} = X ] ; then
1438	[ -f ${2} ] && IGCM_sys_Chmod 444 ${2}
1439	[ -f ${2}/${1} ] && IGCM_sys_Chmod 444 ${2}/${1}
1440	fi
1441	fi
1442
1443	\rm /tmp/out_command.$$
1444	fi
1445	fi
1446	IGCM_debug_PopStack "IGCM_sys_PutBuffer_Out"
1447	return 0
1448	}
1449
1450	#D-#==================================================
1451	#D-function IGCM_sys_Get
1452	#D-* Purpose: Get a file from ${ARCHIVE}
1453	#D-* Examples: IGCM_sys_Get myfile /destpath/myfile_with_PREFIX
1454	#D- IGCM_sys_Get /l Array_contain_myfiles /destpath/
1455	function IGCM_sys_Get {
1456	IGCM_debug_PushStack "IGCM_sys_Get" $@
1457
1458	typeset DEST dm_liste target file_work
1459	typeset NB_ESSAI DELAI status i
1460
1461	if ( $DEBUG_sys ) ; then
1462	echo "IGCM_sys_Get :" $@
1463	fi
1464
1465	# number of tentative
1466	NB_ESSAI=3
1467	# time delay between tentative
1468	DELAI=2
1469
1470	if [ $DRYRUN -le 2 ]; then
1471	if [ X${1} = X'/l' ] ; then
1472	eval set +A dm_liste \${${2}}
1473	else
1474	eval set +A dm_liste ${1}
1475	fi
1476	eval DEST=\${${#}}
1477
1478	#=====================================================
1479	# COMMENT OUT DOUBLE COPY ON SCRATCHDIR
1480	#=====================================================
1481
1482	# Is it an R_OUT file (not R_IN) ?
1483	#echo ${dm_liste[0]} \| grep "${R_OUT}" > /dev/null 2>&1
1484	#if [ $? -eq 0 ] ; then
1485	# # Yes ? then we try to get it in SCRATCHDIR
1486	# set +A file_work $( echo ${dm_liste[*]} \| sed -e "s\|${R_OUT}\|${R_BUF}\|g" )
1487	# if [ -f ${file_work[0]} ] ; then
1488	# IGCM_sys_Cp ${file_work[*]} ${DEST}
1489	# IGCM_debug_PopStack "IGCM_sys_Get"
1490	# return
1491	# fi
1492	#fi
1493
1494	ccc_hsm get ${dm_liste[*]} > /tmp/out_command.$$ 2>&1
1495	status=$?
1496	if [ ${status} -gt 0 ] ; then
1497	echo "WARNING IGCM_sys_Get : error code ${status}"
1498	cat /tmp/out_command.$$
1499	echo "WARNING IGCM_sys_Get : will stop later if the cp fails."
1500	fi
1501
1502	#if [ ${status} -gt 0 ] ; then
1503	# if [ ! "X$( grep "Lost dmusrcmd connection" /tmp/out_command.$$ )" = "X" ] ; then
1504	# cat /tmp/out_command.$$
1505	# echo "WARNING IGCM_sys_Get : Lost dmusrcmd connection : "
1506	# sleep 30
1507	# echo "We try another time"
1508	## dmget ${dm_liste[*]} > /tmp/out_command.$$ 2>&1
1509	# ccc_hsm get ${dm_liste[*]} > /tmp/out_command.$$ 2>&1
1510	# status=$?
1511	# if [ ${status} -gt 0 ] ; then
1512	# echo "ERROR IGCM_sys_Get : again demigration error :"
1513	# cat /tmp/out_command.$$
1514	# IGCM_debug_Exit "IGCM_sys_Get"
1515	# fi
1516	# else
1517	# echo "ERROR IGCM_sys_Get : demigration error :"
1518	# cat /tmp/out_command.$$
1519	# IGCM_debug_Exit "IGCM_sys_Get"
1520	# fi
1521	#fi
1522
1523	# #RSYNC WITH NETWORK SSH CALL
1524	# echo ${RSYNC} ${RSYNC_opt} -e ssh ${STOREHOST}:"${dm_liste}" ${STOREHOST}:${RUN_DIR}/${DEST} > /tmp/out_command.$$ 2>&1
1525	# ${RSYNC} ${RSYNC_opt} -e ssh ${STOREHOST}:"${dm_liste}" ${STOREHOST}:${RUN_DIR}/${DEST} >> /tmp/out_command.$$ 2>&1
1526
1527	# #RSYNC WITH NFS USE
1528	# echo ${RSYNC} ${RSYNC_opt} ${dm_liste} ${RUN_DIR}/${DEST} > /tmp/out_command.$$ 2>&1
1529	# ${RSYNC} ${RSYNC_opt} ${dm_liste} ${RUN_DIR}/${DEST} >> /tmp/out_command.$$ 2>&1
1530
1531	# status=$?
1532	# IGCM_sys_Rsync_out $status
1533
1534	# ${libIGCM}/libIGCM_sys/IGCM_analyse_rsync_out.awk /tmp/out_command.$$
1535	# (( status=status+$? ))
1536
1537	#USUAL WAY
1538	if [ X${1} = X'/l' ] ; then
1539	for target in ${dm_liste[*]} ; do
1540	local_file=$( basename ${target} )
1541	# test if the target file is present before the loop
1542	IGCM_sys_TestFileArchive ${target}
1543	status=$?
1544	if [ ${status} -gt 0 ] ; then
1545	echo "IGCM_sys_Get, ERROR : regular file ${target} DOES NOT EXIST ."
1546	IGCM_debug_Exit "IGCM_sys_Get"
1547	else
1548	i=0
1549	while [ $i -lt $NB_ESSAI ] ; do
1550	\cp ${target} ${DEST}/${local_file} >> /tmp/out_command.$$ 2>&1
1551	status=$?
1552	if [ ${status} -gt 0 ]; then
1553	IGCM_debug_Print 2 "IGCM_sys_Get : cp failed error code ${status} ${i}/${NB_ESSAI}"
1554	IGCM_debug_Print 2 "IGCM_sys_Get : sleep ${DELAI} seconds and try again."
1555	sleep $DELAI
1556	else
1557	break
1558	fi
1559	(( i = i + 1 ))
1560	done
1561	if [ ${status} -gt 0 ] ; then
1562	echo "IGCM_sys_Get : error"
1563	cat /tmp/out_command.$$
1564	\rm /tmp/out_command.$$
1565	IGCM_debug_Exit "IGCM_sys_Get"
1566	else
1567	\rm /tmp/out_command.$$
1568	fi
1569	fi
1570	done
1571	else
1572	i=0
1573	while [ $i -lt $NB_ESSAI ] ; do
1574	\cp ${dm_liste} ${DEST} >> /tmp/out_command.$$ 2>&1
1575	status=$?
1576	if [ ${status} -gt 0 ]; then
1577	IGCM_debug_Print 2 "IGCM_sys_Get : cp failed error code ${status} ${i}/${NB_ESSAI}"
1578	IGCM_debug_Print 2 "IGCM_sys_Get : sleep ${DELAI} seconds and try again."
1579	sleep $DELAI
1580	else
1581	break
1582	fi
1583	(( i = i + 1 ))
1584	done
1585	if [ ${status} -gt 0 ] ; then
1586	echo "IGCM_sys_Get : error"
1587	cat /tmp/out_command.$$
1588	\rm /tmp/out_command.$$
1589	IGCM_debug_Exit "IGCM_sys_Get"
1590	else
1591	\rm /tmp/out_command.$$
1592	fi
1593	fi
1594	fi
1595	IGCM_debug_PopStack "IGCM_sys_Get"
1596	}
1597
1598	#D-#==================================================
1599	#D-function IGCM_sys_GetBuffer
1600	#D-* Purpose: Get a file from ${SCRATCHDIR}
1601	#D-* Examples: IGCM_sys_GetBuffer myfile /destpath/myfile_with_PREFIX
1602	#D- IGCM_sys_GetBuffer /l Array_contain_myfiles /destpath/
1603	function IGCM_sys_GetBuffer {
1604	IGCM_debug_PushStack "IGCM_sys_GetBuffer" $@
1605
1606	typeset DEST buf_liste target file_work
1607	typeset NB_ESSAI DELAI status i
1608
1609	if ( $DEBUG_sys ) ; then
1610	echo "IGCM_sys_GetBuffer :" $@
1611	fi
1612
1613	# number of tentative
1614	NB_ESSAI=3
1615	# time delay between tentative
1616	DELAI=2
1617
1618	if [ $DRYRUN -le 2 ]; then
1619	if [ X${1} = X'/l' ] ; then
1620	eval set +A buf_liste \${${2}}
1621	else
1622	eval set +A buf_liste ${1}
1623	fi
1624	eval DEST=\${${#}}
1625
1626	#USUAL WAY
1627	if [ X${1} = X'/l' ] ; then
1628	for target in ${buf_liste[*]} ; do
1629	local_file=$( basename ${target} )
1630	i=0
1631	while [ $i -lt $NB_ESSAI ] ; do
1632	\cp ${target} ${DEST}/${local_file} >> /tmp/out_command.$$ 2>&1
1633	status=$?
1634	if [ ${status} -gt 0 ]; then
1635	IGCM_debug_Print 2 "IGCM_sys_GetBuffer : cp failed error code ${status} ${i}/${NB_ESSAI}"
1636	IGCM_debug_Print 2 "IGCM_sys_GetBuffer : sleep ${DELAI} seconds and try again."
1637	sleep $DELAI
1638	else
1639	break
1640	fi
1641	(( i = i + 1 ))
1642	done
1643	if [ ${status} -gt 0 ] ; then
1644	echo "IGCM_sys_Get : error"
1645	cat /tmp/out_command.$$
1646	\rm /tmp/out_command.$$
1647	IGCM_debug_Exit "IGCM_sys_GetBuffer"
1648	else
1649	\rm /tmp/out_command.$$
1650	fi
1651	done
1652	else
1653	i=0
1654	while [ $i -lt $NB_ESSAI ] ; do
1655	\cp ${buf_liste} ${DEST} >> /tmp/out_command.$$ 2>&1
1656	status=$?
1657	if [ ${status} -gt 0 ]; then
1658	IGCM_debug_Print 2 "IGCM_sys_GetBuffer : cp failed error code ${status} ${i}/${NB_ESSAI}"
1659	IGCM_debug_Print 2 "IGCM_sys_GetBuffer : sleep ${DELAI} seconds and try again."
1660	sleep $DELAI
1661	else
1662	break
1663	fi
1664	(( i = i + 1 ))
1665	done
1666	if [ ${status} -gt 0 ] ; then
1667	echo "IGCM_sys_Get : error"
1668	cat /tmp/out_command.$$
1669	\rm /tmp/out_command.$$
1670	IGCM_debug_Exit "IGCM_sys_GetBuffer"
1671	else
1672	\rm /tmp/out_command.$$
1673	fi
1674	fi
1675	fi
1676	IGCM_debug_PopStack "IGCM_sys_GetBuffer"
1677	}
1678
1679	#D-#==================================================
1680	#D-function IGCM_sys_GetDate_FichWork
1681	#D-* Purpose: donne la date filesys d'un fichier sur le filesystem WORK
1682	#D-* Examples:
1683	#D-
1684	function IGCM_sys_GetDate_FichWork {
1685	IGCM_debug_PushStack "IGCM_sys_FichWork" $@
1686	if ( $DEBUG_sys ) ; then
1687	echo "IGCM_sys_GetDate_FichWork :" $@
1688	fi
1689
1690	if [ $# -ge 3 ] ; then
1691	mode=$3
1692	TimeStyle=$4
1693	else
1694	mode="default"
1695	TimeStyle="%Y%m%d%H%M%S"
1696	fi
1697
1698	typeset dateF
1699	set +A dateF -- $( ls -l --full-time --time-style=+"${TimeStyle}" ${1} )
1700
1701	case $mode in
1702	"default")
1703	eval ${2}=${dateF[5]}
1704	;;
1705	"SplitFields")
1706	eval ${2}="${dateF[5]}\ ${dateF[6]}"
1707	;;
1708	esac
1709
1710
1711	# donne la date filesys d'un fichier sur la machine work
1712	IGCM_debug_PopStack "IGCM_sys_FichWork"
1713	}
1714
1715	#D-#==================================================
1716	#D-function IGCM_sys_GetDate_FichArchive
1717	#D-* Purpose: donne la date filesys d'un fichier sur le filesystem ARCHIVE
1718	#D-* Examples:
1719	#D-
1720	function IGCM_sys_GetDate_FichArchive {
1721	IGCM_debug_PushStack "IGCM_sys_FichArchive" $@
1722	if ( $DEBUG_sys ) ; then
1723	echo "IGCM_sys_GetDate_FichArchive :" $@
1724	fi
1725	typeset dateF
1726	set +A dateF -- $( ls -l --full-time --time-style='+%Y%m%d%H%M%S' ${1} )
1727	eval ${2}=${dateF[5]}
1728
1729	IGCM_debug_PopStack "IGCM_sys_FichArchive"
1730	}
1731
1732	#D-#==================================================
1733	#D-function IGCM_sys_GetDate_Monitoring
1734	#D-* Purpose: get the last year for which the monitoring has been computed
1735	#D-* Examples:
1736	#D-
1737	function IGCM_sys_GetDate_Monitoring {
1738	IGCM_debug_PushStack "IGCM_sys_GetDate_Monitoring" $@
1739	if ( $DEBUG_sys ) ; then
1740	echo "IGCM_sys_GetDate_Monitoring :" $@
1741	fi
1742
1743	eval ${2}=$( cdo showyear ${1} 2> /dev/null \| gawk '{ print $NF }' )
1744
1745	IGCM_debug_PopStack "IGCM_sys_GetDate_Monitoring"
1746	}
1747
1748	#D-#==================================================
1749	#D-function IGCM_sys_Dods_Rm
1750	#D-* Purpose: DO NOTHING ! Put ${ARCHIVE} files on DODS internet protocole.
1751	#D-* Examples:
1752	#D-
1753	function IGCM_sys_Dods_Rm {
1754	if ( $DEBUG_sys ) ; then
1755	echo "IGCM_sys_Dods_Rm :" $@
1756	fi
1757	typeset status
1758	if [ $DRYRUN = 0 ]; then
1759
1760	# if [ ! -d /dmnfs/cont003/dods/public/${LOGIN}/${R_DODS}/${1} ] ; then
1761	# echo "WARNING : IGCM_sys_Dods_Rm /dmnfs/cont003/dods/public/${LOGIN}/${R_DODS}/${1} DOES NOT EXIST ."
1762	# echo "Nothing has been done."
1763	# return
1764	# fi
1765
1766	/ccc/cont003/home/dsm/p86ipsl/bin/dods_rm public/${LOGIN}/${R_DODS}/${1} # > out_dods_rm 2>&1
1767	status=$?
1768
1769	# if [ ${status} -gt 0 ] ; then
1770	# echo "IGCM_sys_Dods_Rm : error."
1771	# cat out_dods_rm
1772	# IGCM_debug_Exit "IGCM_sys_Dods_Rm"
1773	# else
1774	# rm out_dods_rm
1775	# fi
1776
1777	fi
1778	return $status
1779	}
1780
1781	#D-#==================================================
1782	#D-function IGCM_sys_Dods_Cp
1783	#D-* Purpose: Copy $(ARCHIVE) files on DODS internet protocole.
1784	#D-* Examples:
1785	#D-
1786	function IGCM_sys_Dods_Cp {
1787	if ( $DEBUG_sys ) ; then
1788	echo "IGCM_sys_Dods_Cp :" $@
1789	fi
1790	typeset status
1791	if [ $DRYRUN = 0 ]; then
1792
1793	# if [ ! -d ${R_SAVE}/${1} ] ; then
1794	# echo "WARNING : IGCM_sys_Dods_Cp ${R_SAVE}/${1} DOES NOT EXIST ."
1795	# echo "Nothing has been done."
1796	# return
1797	# fi
1798
1799	/ccc/cont003/home/dsm/p86ipsl/bin/dods_cp ${1} public/${LOGIN}/${R_DODS} # > out_dods_cp 2>&1
1800	status=$?
1801
1802	# if [ ${status} -gt 0 ] ; then
1803	# echo "IGCM_sys_Dods_Cp : error."
1804	# cat out_dods_cp
1805	# IGCM_debug_Exit "IGCM_sys_Dods_Cp"
1806	# else
1807	# rm out_dods_cp
1808	# fi
1809
1810	fi
1811	return $status
1812	}
1813
1814	#D-#==================================================
1815	#D-function IGCM_sys_Put_Dods
1816	#D-* Purpose: Put $(ARCHIVE) files on DODS internet protocole.
1817	#D-* Examples:
1818	#D-
1819	function IGCM_sys_Put_Dods {
1820	IGCM_debug_PushStack "IGCM_sys_Put_Dods" $@
1821	if ( $DEBUG_sys ) ; then
1822	echo "IGCM_sys_Put_Dods :" $@
1823	fi
1824	#set -vx
1825	typeset status
1826	if [ $DRYRUN = 0 ]; then
1827	if ( [ ! -d ${R_SAVE}/${1} ] && [ ! -d ${R_FIGR}/${1} ] ) ; then
1828	echo "WARNING IGCM_sys_Put_Dods : None of the following directories exist. Exactly one should."
1829	echo "WARNING IGCM_sys_Put_Dods : ${R_SAVE}/${1} DOES NOT EXIST."
1830	echo "WARNING IGCM_sys_Put_Dods : ${R_FIGR}/${1} DOES NOT EXIST."
1831	IGCM_debug_PopStack "IGCM_sys_Put_Dods"
1832	return
1833	fi
1834
1835	if ( [ -d ${R_SAVE}/${1} ] && [ -d ${R_FIGR}/${1} ] ) ; then
1836	echo "WARNING IGCM_sys_Put_Dods : Both of the following directories exist. Exactly one should."
1837	echo "WARNING IGCM_sys_Put_Dods : ${R_SAVE}/${1} EXISTS."
1838	echo "WARNING IGCM_sys_Put_Dods : ${R_FIGR}/${1} EXISTS."
1839	IGCM_debug_PopStack "IGCM_sys_Put_Dods"
1840	return
1841	fi
1842	#
1843	if [ -d ${R_SAVE}/${1} ] ; then
1844	cd ${R_SAVE}
1845	elif [ -d ${R_FIGR}/${1} ] ; then
1846	cd ${R_FIGR}
1847	fi
1848
1849	IGCM_sys_Dods_Rm ${1}
1850	IGCM_sys_Dods_Cp ${1}
1851	status=0
1852
1853	if [ ${status} -gt 0 ] ; then
1854	echo "IGCM_sys_Put_Dods : error."
1855	IGCM_debug_Exit "IGCM_sys_Put_Dods"
1856	fi
1857	fi
1858	IGCM_debug_PopStack "IGCM_sys_Put_Dods"
1859	}
1860
1861	##############################################################
1862	# REBUILD OPERATOR
1863
1864	#D-#==================================================
1865	#D-function IGCM_sys_rebuild
1866	#D-* Purpose: rebuild parallel files
1867	#D-* Examples:
1868	#D-
1869	function IGCM_sys_rebuild {
1870	IGCM_debug_PushStack "IGCM_sys_rebuild" -- $@
1871	if ( $DEBUG_sys ) ; then
1872	echo "IGCM_sys_rebuild :" $@
1873	fi
1874
1875	typeset NB_ESSAI DELAI status i firstArg
1876	# number of tentative
1877	NB_ESSAI=3
1878	# time delay between tentative
1879	DELAI=2
1880
1881	i=0
1882	while [ $i -lt $NB_ESSAI ] ; do
1883	~p86ipsl/rebuild/src_X64_CURIE/modipsl_v2_2_2_netcdf4.2/bin/rebuild -f -o $@ > /tmp/out_command.$$ 2>&1
1884	status=$?
1885	if [ ${status} -gt 0 ] ; then
1886	IGCM_debug_Print 2 "IGCM_sys_rebuild : error code ${status}"
1887	cat /tmp/out_command.$$
1888	\rm /tmp/out_command.$$
1889	IGCM_debug_Print 2 "IGCM_sys_rebuild : ${i}/${NB_ESSAI} sleep ${DELAI} seconds and try again."
1890	firstArg=${1}
1891	\rm ${firstArg}
1892	sleep $DELAI
1893	else
1894	\rm /tmp/out_command.$$
1895	break
1896	fi
1897	(( i = i + 1 ))
1898	done
1899
1900	if [ ${status} -gt 0 ] ; then
1901	echo "IGCM_sys_rebuild : rebuild error code is ${status}"
1902	IGCM_debug_Exit "rebuild"
1903	fi
1904
1905	IGCM_debug_PopStack "IGCM_sys_rebuild"
1906	}
1907
1908	#D-#==================================================
1909	#D-function IGCM_sys_rebuild_station
1910	#D-* Purpose: rebuild parallel files describing station
1911	#D-* Examples:
1912	#D-
1913	function IGCM_sys_rebuild_station {
1914	IGCM_debug_PushStack "IGCM_sys_rebuild_station" -- $@
1915	typeset i list_opt file_in file_out prefix_invert list_invert
1916	if ( $DEBUG_sys ) ; then
1917	echo "IGCM_sys_rebuild_station :" $@
1918	fi
1919	list_opt=$@
1920
1921	# Invert Axis : t,x -> x,t
1922	# t,pres,x -> x,t,pres
1923	# So that we can concatenate along x
1924	i=0
1925	for file_in in ${list_opt} ; do
1926	(( i = i + 1))
1927	[ ${i} = 1 ] && file_out=${file_in} && continue
1928	prefix_invert=$( basename ${file_in} .nc )
1929	IGCM_sys_ncpdq -a x,time_counter -a x,time_counter,presnivs ${file_in} ${prefix_invert}_xt.nc
1930	list_invert[${#list_invert[*]}]=${prefix_invert}_xt.nc
1931	done
1932
1933	# Concatenate
1934	IGCM_sys_ncrcat ${list_invert[*]} histstn_xt.nc
1935
1936	# Re-ivert file
1937	IGCM_sys_ncpdq -a time_counter,x -a time_counter,presnivs,x histstn_xt.nc ${file_out}
1938
1939	# Station re-ordering is too expansive to be run within libIGCM
1940	# This is due to (ncpdq - nrcat - ncpdq) I/O sequence.
1941	# This re-ordering must be done "in memory" by the cmorization process
1942	# Anyway this is the best sequence using (ncpdq - nrcat - ncpdq)
1943	# BEGIN reordering
1944
1945	# Only LMDZ text output contains the exact ordering of the station.
1946	# We isolate this in the code below:
1947	# 0 38 -157.5000000000000 70.98591549295774
1948	# 0 54 27.49999999999999 67.18309859154928
1949	# 0 56 -62.50000000000001 82.39436619718309
1950	# 0 79 12.49999999999999 78.59154929577466
1951	# 0 116 -165.0000000000000 76.05633802816901
1952	# 0 117 130.0000000000000 70.98591549295774
1953	# 0 118 110.0000000000000 87.46478873239437
1954	# 1 40 4.999999999999995 51.97183098591550
1955	# typeset iStation iProc list_opt file_in file_out prefix_invert
1956	# typeset -Z4 j4
1957	# typeset -Z3 j3
1958
1959	# unset list_opt
1960	# set +A list_opt $@
1961
1962	# Filename after rebuild
1963	# file_out=${list_opt[0]}
1964	# Prefix of output files
1965	# prefix_invert=$( basename ${file_out} .nc )
1966	# Number of procs
1967	# num_proc=$( grep -i mpi_size ${PREFIX}_${Exe_Output} \| wc -l )
1968
1969	# iProc=0
1970	# while [ ${iProc} -lt ${num_proc} ] ; do
1971	# Array containing Station as a number
1972	# unset proc_stn
1973	# set +A proc_stn $( grep "iophy_mpi rank ip lon lat $iProc" ${PREFIX}_${Exe_Output} \| sed -e "s/iophy_mpi rank ip lon lat //g" \| gawk ' {print $2}' )
1974	# Number of stations produced by processor proc
1975	# stationLast=${#proc_stn[*]}
1976	# Proc number on 4 digits
1977	# j4=${iProc}
1978	# Init
1979	# iStation=0
1980	# while [ ${iStation} -lt ${stationLast} ] ; do
1981	# Station number on 3 digits
1982	# j3=${proc_stn[${iStation}]}
1983	# Extract station
1984	# Invert Axis : t,x -> x,t
1985	# t,pres,x -> x,t,pres
1986	# So that we can concatenate along x
1987	# IGCM_sys_ncpdq -a x,time_counter -a x,time_counter,presnivs -d x,$iStation,$iStation ${prefix_invert}_${j4}.nc ${prefix_invert}_stn_${j3}.nc
1988	# (( iStation = iStation + 1 ))
1989	# done
1990	# (( iProc = iProc + 1 ))
1991	# done
1992
1993	# Concatenate all station along x
1994	# IGCM_sys_ncrcat ${prefix_invert}_stn_???.nc ${prefix_invert}_xt.nc
1995
1996	# Re-invert file
1997	# IGCM_sys_ncpdq -a time_counter,x -a time_counter,presnivs,x ${prefix_invert}_xt.nc ${file_out}
1998
1999	# END reordering
2000
2001	IGCM_debug_PopStack "IGCM_sys_rebuild_station"
2002	}
2003
2004	############################################################
2005	# Activate Running Environnment Variables
2006
2007	#D-#==================================================
2008	#D-function IGCM_sys_desactiv_variables
2009	#D-* Purpose: set environement variables prior to execution
2010	#D-* Examples:
2011	#D-
2012	function IGCM_sys_activ_variables {
2013	IGCM_debug_PushStack "IGCM_sys_activ_variables"
2014	if ( $DEBUG_sys ) ; then
2015	echo "IGCM_sys_activ_variables"
2016	fi
2017
2018	# --------------------------------------------------------------------
2019	#D- MPI specifications
2020	# --------------------------------------------------------------------
2021
2022	# --------------------------------------------------------------------
2023	#D- Other specifications
2024	# --------------------------------------------------------------------
2025
2026	ulimit -s unlimited
2027
2028	IGCM_debug_PopStack "IGCM_sys_activ_variables"
2029	}
2030
2031	############################################################
2032	# Desactivate Running Environnment Variables
2033
2034	#D-#==================================================
2035	#D-function IGCM_sys_desactiv_variables
2036	#D-* Purpose: unset environement variables after execution
2037	#D-* Examples:
2038	#D-
2039	function IGCM_sys_desactiv_variables {
2040	IGCM_debug_PushStack "IGCM_sys_desactiv_variables"
2041	if ( $DEBUG_sys ) ; then
2042	echo "IGCM_sys_desactiv_variables"
2043	fi
2044	# --------------------------------------------------------------------
2045	#D- MPI specifications
2046	# --------------------------------------------------------------------
2047
2048	# --------------------------------------------------------------------
2049	#D- Other specifications
2050	# --------------------------------------------------------------------
2051
2052	IGCM_debug_PopStack "IGCM_sys_desactiv_variables"
2053	}
2054
2055	############################################################
2056	# Build MPI/OMP scripts run file (dummy function)
2057
2058	#D-#==================================================
2059	#D-function IGCM_sys_build_run_file
2060	#D-* Purpose: build run file (deprecated)
2061	#D-* Examples:
2062	#D-
2063	function IGCM_sys_build_run_file {
2064
2065	IGCM_debug_Print 3 " dummy function : IGCM_sys_build_run_file "
2066
2067	}
2068
2069	############################################################
2070	# Build MPI/OMP scripts
2071
2072	#D-#==================================================
2073	#D-function IGCM_sys_build_execution_scripts
2074	#D-* Purpose: build execution scripts to be launch by ${HOST_MPIRUN_COMMAND}
2075	#D-* Examples:
2076	#D-
2077	function IGCM_sys_build_execution_scripts
2078	{
2079	IGCM_debug_PushStack "IGCM_sys_build_execution_scripts" $@
2080	if ( $DEBUG_sys ) ; then
2081	echo "IGCM_sys_build_execution_scripts " $@
2082	fi
2083
2084	EXECUTION=${HOST_MPIRUN_COMMAND}
2085
2086	# MPMD mode
2087
2088	if ( ${OK_PARA_MPMD} ) ; then
2089
2090	# Only MPI (MPMD)
2091	if ( ! ${OK_PARA_OMP} ) ; then
2092
2093	if [ -f run_file ] ; then
2094	IGCM_sys_Rm -f run_file
2095	fi
2096	touch run_file
2097
2098	# Build run_file
2099
2100	# First loop on the components for the coupler ie oasis (only if oasis3)
2101
2102	## the coupler ie oasis3 must be the first one
2103	for comp in ${config_ListOfComponents[*]} ; do
2104
2105	eval ExeNameIn=\${config_Executable_${comp}[0]}
2106	eval ExeNameOut=\${config_Executable_${comp}[1]}
2107
2108	# for CPL component only
2109	if [ "X${comp}" = "XCPL" ] && [ "X${ExeNameOut}" != X\"\" ] ; then
2110
2111	eval comp_proc_mpi_loc=\${${comp}_PROC_MPI}
2112	eval comp_proc_omp_loc=\${${comp}_PROC_OMP}
2113	echo "${comp_proc_mpi_loc} ./${ExeNameOut}" >> run_file
2114	fi
2115	done
2116
2117	# Then second loop on the components
2118
2119	for comp in ${config_ListOfComponents[*]} ; do
2120
2121	eval ExeNameIn=\${config_Executable_${comp}[0]}
2122	eval ExeNameOut=\${config_Executable_${comp}[1]}
2123
2124	# Only if we really have an executable for the component and not the coupler ie oasis:
2125	if ( [ "X${ExeNameOut}" != X\"\" ] && [ "X${comp}" != "XCPL" ] ) ; then
2126
2127	eval comp_proc_mpi_loc=\${${comp}_PROC_MPI}
2128	eval comp_proc_omp_loc=\${${comp}_PROC_OMP}
2129	echo "${comp_proc_mpi_loc} ./${ExeNameOut}" >> run_file
2130	fi
2131	done
2132
2133	EXECUTION="${HOST_MPIRUN_COMMAND} -f ./run_file"
2134
2135	IGCM_sys_Chmod u+x run_file
2136	if ( $DEBUG_sys ) ; then
2137	echo "run_file contains : "
2138	cat run_file
2139	fi
2140
2141	# MPI-OpenMP (MPMD)
2142	else
2143
2144	# Use of mpirun instead of ccc_mprun
2145	EXECUTION="time mpirun"
2146
2147	# Hosts treatment
2148	${EXECUTION} hostname \| sort \| uniq > hosts.tmp
2149
2150	i=0
2151	rm -f hosts rankfile
2152	IGCM_debug_Print 1 "sys Curie, Hosts available :"
2153	for nodes in `cat hosts.tmp`
2154	do
2155	host[$i]=$nodes
2156	echo "${host[$i]}" >> hosts
2157	IGCM_debug_Print 1 ${host[$i]}
2158	i=$((i+1))
2159	done
2160	rm -f hosts.tmp
2161
2162	listnodes=${host[*]}
2163
2164	EXECUTION="${EXECUTION} -hostfile hosts -rankfile rankfile"
2165
2166	# Initialisation
2167	rank=0
2168	current_core=0
2169	core_per_node=16
2170	init_exec=n
2171
2172	# Loop on the components
2173	for comp in ${config_ListOfComponents[*]} ; do
2174
2175	eval ExeNameIn=\${config_Executable_${comp}[0]}
2176	eval ExeNameOut=\${config_Executable_${comp}[1]}
2177
2178	# Not possible if oasis has an executable (i.e old version of oasis3)
2179	if ( [ "X${ExeNameOut}" != X\"\" ] && [ "X${comp}" = "XCPL" ] ) ; then
2180	IGCM_debug_Exit "ERROR MPMD with hybrid MPI-OpenMP is not available with oasis3 version"
2181	IGCM_debug_Print 2 "Only available with oasis3-MCT version coupler"
2182	IGCM_debug_Verif_Exit
2183	fi
2184
2185	# Only if we really have an executable for the component :
2186	if [ "X${ExeNameOut}" != X\"\" ] ; then
2187
2188	eval comp_proc_mpi_loc=\${${comp}_PROC_MPI}
2189	eval comp_proc_omp_loc=\${${comp}_PROC_OMP}
2190
2191	echo "#!/bin/ksh" > script_${ExeNameOut}.ksh
2192	echo "" >> script_${ExeNameOut}.ksh
2193	if [ ${comp_proc_omp_loc} -gt 1 ] ; then
2194
2195	# Check if the number of threads is correct
2196	case ${comp_proc_omp_loc} in
2197	2\|4\|8\|16)
2198	IGCM_debug_Print 1 "You run ${ExeNameOut} on ${comp_proc_omp_loc} OMP threads"
2199	;;
2200	*)
2201	IGCM_debug_Exit "ERROR with OMP parameters !"
2202	IGCM_debug_Print 2 "${comp_proc_omp_loc} is not possible as number of OMP threads"
2203	IGCM_debug_Print 2 "Only 2,4,8,16 as number of OMP threads are possible "
2204	IGCM_debug_Verif_Exit
2205	;;
2206	esac
2207	echo "export KMP_STACKSIZE=3g" >> script_${ExeNameOut}.ksh
2208	echo "export KMP_LIBRARY=turnaround" >> script_${ExeNameOut}.ksh
2209	echo "export MKL_SERIAL=YES" >> script_${ExeNameOut}.ksh
2210	echo "OMP_NUM_THREADS=${comp_proc_omp_loc}" >> script_${ExeNameOut}.ksh
2211	fi
2212	# echo "(( MYMPIRANK = OMPI_COMM_WORLD_RANK - ${start_num})) " >> script_${ExeNameOut}.ksh
2213	# echo "./${ExeNameOut} > out_${ExeNameOut}.out.\${MYMPIRANK} 2>out_${ExeNameOut}.err.\${MYMPIRANK}" >> script_${ExeNameOut}.ksh
2214	echo "./${ExeNameOut}" >> script_${ExeNameOut}.ksh
2215	IGCM_sys_Chmod u+x script_${ExeNameOut}.ksh
2216
2217	if [ ${init_exec} = y ] ; then
2218	EXECUTION="${EXECUTION} : -np ${comp_proc_mpi_loc} ./script_${ExeNameOut}.ksh"
2219	else
2220	EXECUTION="${EXECUTION} -np ${comp_proc_mpi_loc} ./script_${ExeNameOut}.ksh"
2221	init_exec=y
2222	fi
2223
2224	# Build rankfile : method used to assign cores and nodes for the MPI process
2225	# Ex :
2226	#rank 0=curie5296 slot=0,1,2,3
2227	#rank 1=curie5296 slot=4,5,6,7
2228	# Example of final command :
2229	# mpirun -hostfile hosts -rankfile rankfile -np 27 ./script_lmdz.x.ksh : -np 5 ./script_opa.xx.ksh
2230	# with script_lmdz.x.ksh :
2231	# #!/bin/ksh
2232	#export KMP_STACKSIZE=3g
2233	#export KMP_LIBRARY=turnaround
2234	#export MKL_SERIAL=YES
2235	#OMP_NUM_THREADS=4
2236	#./lmdz.x
2237	#
2238
2239	for nb_proc_mpi in `seq 0 $(($comp_proc_mpi_loc-1))`; do
2240	(( index_host = current_core / core_per_node ))
2241	host_value=${host[${index_host}]}
2242	(( slot = current_core % core_per_node ))
2243	virg=","
2244	string_final=""
2245	for index in `seq $slot $(($slot+$comp_proc_omp_loc-1))`; do
2246	string=$index$virg
2247	string_final=$string_final$string
2248	done
2249	string_final=$( echo $string_final \| sed "s/.$//" )
2250	echo "rank $rank=$host_value slot=$string_final" >> rankfile
2251	(( rank = rank + 1 ))
2252	(( current_core = current_core + comp_proc_omp_loc ))
2253	done
2254	fi
2255
2256	done
2257	fi
2258
2259	# Only one executable (SPMD mode).
2260	else
2261
2262	for comp in ${config_ListOfComponents[*]} ; do
2263
2264	# Only if we really have an executable for the component :
2265	eval ExeNameOut=\${config_Executable_${comp}[1]}
2266	if ( [ "X${ExeNameOut}" != X\"\" ] && [ "X${ExeNameOut}" != "Xinca.dat" ] ) ; then
2267
2268	echo "#!/bin/ksh" > script_${ExeNameOut}.ksh
2269	echo "" >> script_${ExeNameOut}.ksh
2270	IGCM_sys_Chmod u+x script_${ExeNameOut}.ksh
2271
2272	if ( ${OK_PARA_OMP} ) ; then
2273	eval comp_proc_omp_loc=\${${comp}_PROC_OMP}
2274	echo "" >> script_${ExeNameOut}.ksh
2275	echo "export KMP_STACKSIZE=3g" >> script_${ExeNameOut}.ksh
2276	echo "export KMP_LIBRARY=turnaround" >> script_${ExeNameOut}.ksh
2277	echo "export MKL_SERIAL=YES" >> script_${ExeNameOut}.ksh
2278	echo "OMP_NUM_THREADS=${comp_proc_omp_loc}" >> script_${ExeNameOut}.ksh
2279	fi
2280
2281	if ( ${OK_PARA_MPI} ) ; then
2282	eval comp_proc_mpi_loc=\${${comp}_PROC_MPI}
2283	# Default : ccc_mprun used if nb_proc gt 1
2284	# to have out/err per process on different files
2285	# echo "./${ExeNameOut} > out_${ExeNameOut}.out.\${SLURM_PROCID} 2>out_${ExeNameOut}.err.\${SLURM_PROCID}" >> script_${ExeNameOut}.ksh
2286	echo "./${ExeNameOut}" >> script_${ExeNameOut}.ksh
2287	EXECUTION="${HOST_MPIRUN_COMMAND} -n ${comp_proc_mpi_loc} ./script_${ExeNameOut}.ksh"
2288	else
2289	# Default : ccc_mprun is NOT used if nb_proc eq 1
2290	# to have out/err per process on different files
2291	# echo "./${ExeNameOut} > out_${ExeNameOut}.out 2>out_${ExeNameOut}.err" >> script_${ExeNameOut}.ksh
2292	echo "./${ExeNameOut}" >> script_${ExeNameOut}.ksh
2293	EXECUTION="/usr/bin/time ./script_${ExeNameOut}.ksh"
2294	fi
2295
2296	IGCM_debug_Print 1 "sys Curie : script_${ExeNameOut}.ksh contains"
2297	cat script_${ExeNameOut}.ksh
2298
2299	fi
2300
2301	done
2302
2303	fi
2304
2305	IGCM_debug_Print 1 "sys Curie : execution command is "
2306	IGCM_debug_Print 1 "$EXECUTION"
2307
2308	IGCM_debug_PopStack "IGCM_sys_build_execution_scripts"
2309	}
2310
2311	#D-#==================================================
2312	#D-function IGCM_sys_check_path
2313	#D-* Purpose: check that RUN_DIR_PATH that will be removed on some machine
2314	#D-* do not point to an important use directory. Stop immediately in that case.
2315	#D-* Examples:
2316	#D-
2317	function IGCM_sys_check_path {
2318	IGCM_debug_PushStack "IGCM_sys_check_path"
2319	if ( $DEBUG_sys ) ; then
2320	echo "IGCM_sys_check_path"
2321	fi
2322
2323	if ( [ X${RUN_DIR_PATH} = X${HOME} ] \|\| [ X${RUN_DIR_PATH} = X${WORKDIR} ] \|\| [ X${RUN_DIR_PATH} = X${SCRATCHDIR} ] \|\| [ X${RUN_DIR_PATH} = X${CCCWORKDIR} ] \|\| [ X${RUN_DIR_PATH} = X${CCCSTOREDIR} ] ) ; then
2324	IGCM_debug_Print 1 "Variable RUN_DIR_PATH is pointing to an important directory : ${RUN_DIR_PATH}"
2325	IGCM_debug_Print 1 "Please check the RUN_DIR_PATH definition in your Job : Job_${config_UserChoices_JobName}"
2326	IGCM_debug_Exit "This will stop the job"
2327	fi
2328	IGCM_debug_PopStack "IGCM_sys_check_path"
2329	}
2330
2331	#D-#==================================================
2332	#D-function IGCM_sys_check_quota
2333	#D-* Purpose: check user quota. Stop the simulation if quota above 90%
2334	#D-* Examples:
2335	#D-
2336	function IGCM_sys_check_quota {
2337	IGCM_debug_PushStack "IGCM_sys_check_quota"
2338	if ( $DEBUG_sys ) ; then
2339	echo "IGCM_sys_check_quota"
2340	fi
2341	# Limit of quota (in %)
2342	limit_quota=90
2343
2344	# Check of the volume
2345	volume_quota=$(ccc_quota \| grep ' scratch' \| gawk '{print $2}')
2346	volume_avail=$(ccc_quota \| grep ' scratch' \| gawk '{print $3}')
2347
2348	if ( [ ! X${volume_quota} = X ] && [ ! ${volume_quota} = "-" ] ) ; then
2349
2350	unit_avail=${volume_avail: -1}
2351	unit_quota=${volume_quota: -1}
2352
2353	if [ "${unit_quota}" = "*" ] ; then
2354	IGCM_debug_Print 1 "Please, check your quota of volume on scratch"
2355	IGCM_debug_Print 1 "More than 100% of your quota is used"
2356	IGCM_debug_Print 1 "Use the ccc_quota command to check"
2357	IGCM_debug_Print 1 "You must have more than 10% available to run"
2358	IGCM_debug_Exit "Not enough space to run ! STOP HERE"
2359	IGCM_debug_Verif_Exit
2360	fi
2361
2362	temp_avail=${volume_avail%%${volume_avail: -1}*}
2363	temp_quota=${volume_quota%%${volume_quota: -1}*}
2364
2365	if [ ! ${unit_avail} = ${unit_quota} ] ; then
2366
2367	# Convertion
2368	if [ ${volume_avail: -1} = "T" ] ; then
2369	(( temp_avail = temp_avail * 1000000000000 ))
2370	elif [ ${volume_avail: -1} = "G" ] ; then
2371	(( temp_avail = temp_avail * 1000000000 ))
2372	elif [ ${volume_avail: -1} = "M" ] ; then
2373	(( temp_avail = temp_avail * 1000000 ))
2374	elif [ ${volume_avail: -1} = "k" ] ; then
2375	(( temp_avail = temp_avail * 1000 ))
2376	else
2377	(( temp_avail = volume_avail ))
2378	fi
2379	if [ ${volume_quota: -1} = "T" ] ; then
2380	(( temp_quota = temp_quota * 1000000000000 ))
2381	elif [ ${volume_quota: -1} = "G" ] ; then
2382	(( temp_quota = temp_quota * 1000000000 ))
2383	elif [ ${volume_quota: -1} = "M" ] ; then
2384	(( temp_quota = temp_quota * 1000000 ))
2385	elif [ ${volume_quota: -1} = "k" ] ; then
2386	(( temp_quota = temp_quota * 1000 ))
2387	else
2388	(( temp_quota = volume_quota ))
2389	fi
2390	fi
2391
2392	quota_volume=$(echo "scale=2 ; $temp_quota/$temp_avail*100" \| bc)
2393	# echo "volume ratio is " $quota_volume
2394
2395	if [ ${quota_volume} -ge ${limit_quota} ] ; then
2396	IGCM_debug_Print 1 "Please, check your quota of volume on scratch"
2397	IGCM_debug_Print 1 "${quota_volume}% of your quota is used"
2398	IGCM_debug_Print 1 "Use the ccc_quota command to check"
2399	IGCM_debug_Print 1 "You must have more than 10% available to run"
2400	IGCM_debug_Exit "Not enough space to run ! STOP HERE"
2401	IGCM_debug_Verif_Exit
2402	fi
2403
2404	fi
2405
2406	# Check of the number of inodes
2407
2408	inode_quota=$(ccc_quota \| grep ' scratch' \| gawk '{print $6}')
2409	inode_avail=$(ccc_quota \| grep ' scratch' \| gawk '{print $7}')
2410
2411	if ( [ ! X${inode_quota} = X ] && [ ! ${inode_quota} = "-" ] ) ; then
2412
2413	unit_avail=${inode_avail: -1}
2414	unit_quota=${inode_quota: -1}
2415
2416	if [ "${unit_quota}" = "*" ] ; then
2417	IGCM_debug_Print 1 "Please, check your quota of inode on scratch"
2418	IGCM_debug_Print 1 "More than 100% of your quota is used"
2419	IGCM_debug_Print 1 "Use the ccc_quota command to check"
2420	IGCM_debug_Print 1 "You must have more than 10% available to run"
2421	IGCM_debug_Exit "Not enough space to run ! STOP HERE"
2422	IGCM_debug_Verif_Exit
2423	fi
2424
2425	temp_avail=${inode_avail%%${inode_avail: -1}*}
2426	temp_quota=${inode_quota%%${inode_quota: -1}*}
2427
2428	if [ ! ${unit_avail} = ${unit_quota} ] ; then
2429
2430	# Convertion
2431	if [ ${inode_avail: -1} = "T" ] ; then
2432	(( temp_avail = temp_avail * 1000000000000 ))
2433	elif [ ${inode_avail: -1} = "G" ] ; then
2434	(( temp_avail = temp_avail * 1000000000 ))
2435	elif [ ${inode_avail: -1} = "M" ] ; then
2436	(( temp_avail = temp_avail * 1000000 ))
2437	elif [ ${inode_avail: -1} = "k" ] ; then
2438	(( temp_avail = temp_avail * 1000 ))
2439	else
2440	(( temp_avail = inode_avail ))
2441	fi
2442
2443	if [ ${inode_quota: -1} = "T" ] ; then
2444	(( temp_quota = temp_quota * 1000000000000 ))
2445	elif [ ${inode_quota: -1} = "G" ] ; then
2446	(( temp_quota = temp_quota * 1000000000 ))
2447	elif [ ${inode_quota: -1} = "M" ] ; then
2448	(( temp_quota = temp_quota * 1000000 ))
2449	elif [ ${inode_quota: -1} = "k" ] ; then
2450	(( temp_quota = temp_quota * 1000 ))
2451	else
2452	(( temp_quota = inode_quota ))
2453	fi
2454	fi
2455	quota_inode=$(echo "scale=2 ; $temp_quota/$temp_avail*100" \| bc)
2456	# echo "inode ratio is " $quota_inode
2457
2458	if [ ${quota_inode} -ge ${limit_quota} ] ; then
2459	IGCM_debug_Print 1 "Please, check your quota of inode on scratch"
2460	IGCM_debug_Print 1 "${quota_inode}% of your quota is used"
2461	IGCM_debug_Print 1 "Use the ccc_quota command to check"
2462	IGCM_debug_Print 1 "You must have more than 10% available to run"
2463	IGCM_debug_Exit "Not enough space to run ! STOP HERE"
2464	IGCM_debug_Verif_Exit
2465	fi
2466	fi
2467	IGCM_debug_PopStack "IGCM_sys_check_quota"
2468	}
2469
2470	#D-#==================================================
2471	#D-function IGCM_sys_GetJobID
2472	#D-* Purpose: Check if job_name is currently
2473	#D- running or in queue
2474	#D-* Examples: IGCM_sys_GetJobID ${JobName} ${TargetUsr} JobID
2475	#D-
2476	function IGCM_sys_GetJobID {
2477	IGCM_debug_PushStack "IGCM_sys_GetJobID"
2478	if ( $DEBUG_sys ) ; then
2479	echo "IGCM_sys_GetJobID"
2480	fi
2481
2482	# With -f option, the full job name is given in the last column
2483	ID=$( ccc_mstat -f -u $2 \| \
2484	gawk -v JobName=$1 '( $NF ~ JobName ) { print $1 }' )
2485
2486	eval ${3}=${ID}
2487
2488	IGCM_debug_PopStack "IGCM_sys_GetJobID"
2489	}
2490
2491	#D-#==================================================
2492	#D-function IGCM_sys_CountJobInQueue
2493	#D-* Purpose: Check if job_name is currently
2494	#D- running or in queue
2495	#D-* Examples: IGCM_sys_CountJobInQueue ${JobName} NbRun
2496	#D-
2497	function IGCM_sys_CountJobInQueue {
2498	IGCM_debug_PushStack "IGCM_sys_CountJobInQueue"
2499	if ( $DEBUG_sys ) ; then
2500	echo "IGCM_sys_CountJobInQueue"
2501	fi
2502
2503	#NbRun=$( ccc_mstat -f \| grep -c ${JobName} )
2504
2505	# With -f option, the full job name is given in the last column
2506	NbRun=$( ccc_mstat -f \| gawk -v JobName=$1 'BEGIN { x=0 } ( $NF ~ JobName ) { x=x+1 } END { print x }' )
2507
2508	eval ${2}=${NbRun}
2509
2510	IGCM_debug_PopStack "IGCM_sys_CountJobInQueue"
2511	}
2512
2513	#D-#==================================================
2514	#D-function IGCM_sys_ListJobInQueue
2515	#D-* Purpose: Check if job_name is currently
2516	#D- running or in queue
2517	#D-* Examples: IGCM_sys_ListJobInQueue ${User} JobNameList
2518	#D-
2519	function IGCM_sys_ListJobInQueue {
2520	IGCM_debug_PushStack "IGCM_sys_ListJobInQueue"
2521	if ( $DEBUG_sys ) ; then
2522	echo "IGCM_sys_ListJobInQueue"
2523	fi
2524
2525	# With -f option, the full job name is given in the last column
2526	set -A JobList $( ccc_mstat -f \| gawk -v User=$1 \
2527	'( $2 == User && \
2528	$NF != /TS/ && \
2529	$NF !~ /PACK/ && \
2530	$NF !~ /REBUILD/ && \
2531	$NF !~ /pack/ ) \
2532	{ print $NF }' \| sed -e "s/\(.\)\.[0-9]/\1/" )
2533
2534	eval set -A ${2} ${JobList[*]}
2535
2536	IGCM_debug_PopStack "IGCM_sys_ListJobInQueue"
2537	}
2538
2539	##############################################################
2540	# NCO OPERATOR
2541
2542	#D-#==================================================
2543	#D-function IGCM_sys_ncap2
2544	#D-* Purpose: encapsulate ncap2 call so as to manage error code and retry
2545	#D-* Examples:
2546	#D-
2547	function IGCM_sys_ncap2 {
2548	IGCM_debug_PushStack "IGCM_sys_ncap2" -- $@
2549	if ( $DEBUG_sys ) ; then
2550	echo "IGCM_sys_ncap2 :" $@
2551	fi
2552
2553	typeset NB_ESSAI DELAI status i
2554	# number of tentative
2555	NB_ESSAI=3
2556	# time delay between tentative
2557	DELAI=2
2558
2559	i=0
2560	while [ $i -lt $NB_ESSAI ] ; do
2561	ncap2 "$@" > /tmp/out_command.$$ 2>&1
2562	status=$?
2563	if [ ${status} -gt 0 ] ; then
2564	IGCM_debug_Print 2 "IGCM_sys_ncap2 : error code ${status}"
2565	cat /tmp/out_command.$$
2566	\rm /tmp/out_command.$$
2567	IGCM_debug_Print 2 "IGCM_sys_ncap2 : ${i}/${NB_ESSAI} sleep ${DELAI} seconds and try again."
2568	sleep $DELAI
2569	else
2570	\rm /tmp/out_command.$$
2571	break
2572	fi
2573	(( i = i + 1 ))
2574	done
2575
2576	if [ ${status} -gt 0 ] ; then
2577	echo "IGCM_sys_ncap2 : ncap2 error"
2578	IGCM_debug_Exit "ncap2"
2579	fi
2580
2581	IGCM_debug_PopStack "IGCM_sys_ncap2"
2582	}
2583
2584	#D-#==================================================
2585	#D-function IGCM_sys_ncatted
2586	#D-* Purpose: encapsulate ncatted call so as to manage error code and retry
2587	#D-* Examples:
2588	#D-
2589	function IGCM_sys_ncatted {
2590	IGCM_debug_PushStack "IGCM_sys_ncatted" -- $@
2591	if ( $DEBUG_sys ) ; then
2592	echo "IGCM_sys_ncatted :" $@
2593	fi
2594
2595	typeset NB_ESSAI DELAI status i
2596	# number of tentative
2597	NB_ESSAI=3
2598	# time delay between tentative
2599	DELAI=2
2600
2601	i=0
2602	while [ $i -lt $NB_ESSAI ] ; do
2603	ncatted "$@" > /tmp/out_command.$$ 2>&1
2604	status=$?
2605	if [ ${status} -gt 0 ] ; then
2606	IGCM_debug_Print 2 "IGCM_sys_ncatted : error code ${status}"
2607	cat /tmp/out_command.$$
2608	\rm /tmp/out_command.$$
2609	IGCM_debug_Print 2 "IGCM_sys_ncatted : ${i}/${NB_ESSAI} sleep ${DELAI} seconds and try again."
2610	sleep $DELAI
2611	else
2612	\rm /tmp/out_command.$$
2613	break
2614	fi
2615	(( i = i + 1 ))
2616	done
2617
2618	if [ ${status} -gt 0 ] ; then
2619	echo "IGCM_sys_ncatted : ncatted error"
2620	IGCM_debug_Exit "ncatted"
2621	fi
2622
2623	IGCM_debug_PopStack "IGCM_sys_ncatted"
2624	}
2625
2626	#D-#==================================================
2627	#D-function IGCM_sys_ncbo
2628	#D-* Purpose: encapsulate ncbo call so as to manage error code and retry
2629	#D-* Examples:
2630	#D-
2631	function IGCM_sys_ncbo {
2632	IGCM_debug_PushStack "IGCM_sys_ncbo" -- $@
2633	if ( $DEBUG_sys ) ; then
2634	echo "IGCM_sys_ncbo :" $@
2635	fi
2636
2637	typeset NB_ESSAI DELAI status i
2638	# number of tentative
2639	NB_ESSAI=3
2640	# time delay between tentative
2641	DELAI=2
2642
2643	i=0
2644	while [ $i -lt $NB_ESSAI ] ; do
2645	ncbo $@ > /tmp/out_command.$$ 2>&1
2646	status=$?
2647	if [ ${status} -gt 0 ] ; then
2648	IGCM_debug_Print 2 "IGCM_sys_ncbo : error code ${status}"
2649	cat /tmp/out_command.$$
2650	\rm /tmp/out_command.$$
2651	IGCM_debug_Print 2 "IGCM_sys_ncbo : ${i}/${NB_ESSAI} sleep ${DELAI} seconds and try again."
2652	sleep $DELAI
2653	else
2654	\rm /tmp/out_command.$$
2655	break
2656	fi
2657	(( i = i + 1 ))
2658	done
2659
2660	if [ ${status} -gt 0 ] ; then
2661	echo "IGCM_sys_ncbo : ncbo error"
2662	IGCM_debug_Exit "ncbo"
2663	fi
2664
2665	IGCM_debug_PopStack "IGCM_sys_ncbo"
2666	}
2667
2668	#D-#==================================================
2669	#D-function IGCM_sys_ncdif
2670	#D-* Purpose: encapsulate ncdiff call so as to manage error code and retry
2671	#D-* Examples:
2672	#D-
2673	function IGCM_sys_ncdiff {
2674	IGCM_debug_PushStack "IGCM_sys_ncdiff" -- $@
2675	if ( $DEBUG_sys ) ; then
2676	echo "IGCM_sys_ncdiff :" $@
2677	fi
2678
2679	typeset NB_ESSAI DELAI status i
2680	# number of tentative
2681	NB_ESSAI=3
2682	# time delay between tentative
2683	DELAI=2
2684
2685	i=0
2686	while [ $i -lt $NB_ESSAI ] ; do
2687	ncdiff $@ > /tmp/out_command.$$ 2>&1
2688	status=$?
2689	if [ ${status} -gt 0 ] ; then
2690	IGCM_debug_Print 2 "IGCM_sys_ncdiff : error code ${status}"
2691	cat /tmp/out_command.$$
2692	\rm /tmp/out_command.$$
2693	IGCM_debug_Print 2 "IGCM_sys_ncdiff : ${i}/${NB_ESSAI} sleep ${DELAI} seconds and try again."
2694	sleep $DELAI
2695	else
2696	\rm /tmp/out_command.$$
2697	break
2698	fi
2699	(( i = i + 1 ))
2700	done
2701
2702	if [ ${status} -gt 0 ] ; then
2703	echo "IGCM_sys_ncdiff : ncdiff error"
2704	IGCM_debug_Exit "ncdiff"
2705	fi
2706
2707	IGCM_debug_PopStack "IGCM_sys_ncdiff"
2708	}
2709
2710	#D-#==================================================
2711	#D-function IGCM_sys_ncea
2712	#D-* Purpose: encapsulate ncea call so as to manage error code and retry
2713	#D-* Examples:
2714	#D-
2715	function IGCM_sys_ncea {
2716	IGCM_debug_PushStack "IGCM_sys_ncea" -- $@
2717	if ( $DEBUG_sys ) ; then
2718	echo "IGCM_sys_ncea :" $@
2719	fi
2720
2721	typeset NB_ESSAI DELAI status i
2722	# number of tentative
2723	NB_ESSAI=3
2724	# time delay between tentative
2725	DELAI=2
2726
2727	i=0
2728	while [ $i -lt $NB_ESSAI ] ; do
2729	ncea $@ > /tmp/out_command.$$ 2>&1
2730	status=$?
2731	if [ ${status} -gt 0 ] ; then
2732	IGCM_debug_Print 2 "IGCM_sys_ncea : error code ${status}"
2733	cat /tmp/out_command.$$
2734	\rm /tmp/out_command.$$
2735	IGCM_debug_Print 2 "IGCM_sys_ncea : ${i}/${NB_ESSAI} sleep ${DELAI} seconds and try again."
2736	sleep $DELAI
2737	else
2738	\rm /tmp/out_command.$$
2739	break
2740	fi
2741	(( i = i + 1 ))
2742	done
2743
2744	if [ ${status} -gt 0 ] ; then
2745	echo "IGCM_sys_ncea : ncea error"
2746	IGCM_debug_Exit "ncea"
2747	fi
2748
2749	IGCM_debug_PopStack "IGCM_sys_ncea"
2750	}
2751
2752	#D-#==================================================
2753	#D-function IGCM_sys_ncecat
2754	#D-* Purpose: encapsulate ncecat call so as to manage error code and retry
2755	#D-* Examples:
2756	#D-
2757	function IGCM_sys_ncecat {
2758	IGCM_debug_PushStack "IGCM_sys_ncecat" -- $@
2759	if ( $DEBUG_sys ) ; then
2760	echo "IGCM_sys_ncecat :" $@
2761	fi
2762
2763	typeset NB_ESSAI DELAI status i
2764	# number of tentative
2765	NB_ESSAI=3
2766	# time delay between tentative
2767	DELAI=2
2768
2769	i=0
2770	while [ $i -lt $NB_ESSAI ] ; do
2771	ncecat $@ > /tmp/out_command.$$ 2>&1
2772	status=$?
2773	if [ ${status} -gt 0 ] ; then
2774	IGCM_debug_Print 2 "IGCM_sys_ncecat : error code ${status}"
2775	cat /tmp/out_command.$$
2776	\rm /tmp/out_command.$$
2777	IGCM_debug_Print 2 "IGCM_sys_ncecat : ${i}/${NB_ESSAI} sleep ${DELAI} seconds and try again."
2778	sleep $DELAI
2779	else
2780	\rm /tmp/out_command.$$
2781	break
2782	fi
2783	(( i = i + 1 ))
2784	done
2785
2786	if [ ${status} -gt 0 ] ; then
2787	echo "IGCM_sys_ncecat : ncecat error"
2788	IGCM_debug_Exit "ncecat"
2789	fi
2790
2791	IGCM_debug_PopStack "IGCM_sys_ncecat"
2792	}
2793
2794	#D-#==================================================
2795	#D-function IGCM_sys_ncflint
2796	#D-* Purpose: encapsulate ncflint call so as to manage error code and retry
2797	#D-* Examples:
2798	#D-
2799	function IGCM_sys_ncflint {
2800	IGCM_debug_PushStack "IGCM_sys_ncflint" -- $@
2801	if ( $DEBUG_sys ) ; then
2802	echo "IGCM_sys_ncflint :" $@
2803	fi
2804
2805	typeset NB_ESSAI DELAI status i
2806	# number of tentative
2807	NB_ESSAI=3
2808	# time delay between tentative
2809	DELAI=2
2810
2811	i=0
2812	while [ $i -lt $NB_ESSAI ] ; do
2813	ncflint $@ > /tmp/out_command.$$ 2>&1
2814	status=$?
2815	if [ ${status} -gt 0 ] ; then
2816	IGCM_debug_Print 2 "IGCM_sys_ncflint : error code ${status}"
2817	cat /tmp/out_command.$$
2818	\rm /tmp/out_command.$$
2819	IGCM_debug_Print 2 "IGCM_sys_ncflint : ${i}/${NB_ESSAI} sleep ${DELAI} seconds and try again."
2820	sleep $DELAI
2821	else
2822	\rm /tmp/out_command.$$
2823	break
2824	fi
2825	(( i = i + 1 ))
2826	done
2827
2828	if [ ${status} -gt 0 ] ; then
2829	echo "IGCM_sys_ncflint : ncflint error"
2830	IGCM_debug_Exit "ncflint"
2831	fi
2832
2833	IGCM_debug_PopStack "IGCM_sys_ncflint"
2834	}
2835
2836	#D-#==================================================
2837	#D-function IGCM_sys_ncks
2838	#D-* Purpose: encapsulate ncks call so as to manage error code and retry
2839	#D-* Examples:
2840	#D-
2841	function IGCM_sys_ncks {
2842	IGCM_debug_PushStack "IGCM_sys_ncks" -- $@
2843	if ( $DEBUG_sys ) ; then
2844	echo "IGCM_sys_ncks :" $@
2845	fi
2846
2847	typeset NB_ESSAI DELAI status i
2848	# number of tentative
2849	NB_ESSAI=3
2850	# time delay between tentative
2851	DELAI=2
2852
2853	i=0
2854	while [ $i -lt $NB_ESSAI ] ; do
2855	ncks $@ > /tmp/out_command.$$ 2>&1
2856	status=$?
2857	if [ ${status} -gt 0 ] ; then
2858	IGCM_debug_Print 2 "IGCM_sys_ncks : error code ${status}"
2859	cat /tmp/out_command.$$
2860	\rm /tmp/out_command.$$
2861	IGCM_debug_Print 2 "IGCM_sys_ncks : ${i}/${NB_ESSAI} sleep ${DELAI} seconds and try again."
2862	sleep $DELAI
2863	else
2864	\rm /tmp/out_command.$$
2865	break
2866	fi
2867	(( i = i + 1 ))
2868	done
2869
2870	if [ ${status} -gt 0 ] ; then
2871	echo "IGCM_sys_ncks : ncks error"
2872	IGCM_debug_Exit "ncks"
2873	fi
2874
2875	IGCM_debug_PopStack "IGCM_sys_ncks"
2876	}
2877
2878	#D-#==================================================
2879	#D-function IGCM_sys_ncpdq
2880	#D-* Purpose: encapsulate ncpdq call so as to manage error code and retry
2881	#D-* Examples:
2882	#D-
2883	function IGCM_sys_ncpdq {
2884	IGCM_debug_PushStack "IGCM_sys_ncpdq" -- $@
2885	if ( $DEBUG_sys ) ; then
2886	echo "IGCM_sys_ncpdq :" $@
2887	fi
2888
2889	typeset NB_ESSAI DELAI status i
2890	# number of tentative
2891	NB_ESSAI=3
2892	# time delay between tentative
2893	DELAI=2
2894
2895	i=0
2896	while [ $i -lt $NB_ESSAI ] ; do
2897	ncpdq $@ > /tmp/out_command.$$ 2>&1
2898	status=$?
2899	if [ ${status} -gt 0 ] ; then
2900	IGCM_debug_Print 2 "IGCM_sys_ncpdq : error code ${status}"
2901	cat /tmp/out_command.$$
2902	\rm /tmp/out_command.$$
2903	IGCM_debug_Print 2 "IGCM_sys_ncpdq : ${i}/${NB_ESSAI} sleep ${DELAI} seconds and try again."
2904	sleep $DELAI
2905	else
2906	\rm /tmp/out_command.$$
2907	break
2908	fi
2909	(( i = i + 1 ))
2910	done
2911
2912	if [ ${status} -gt 0 ] ; then
2913	echo "IGCM_sys_ncpdq : ncpdq error"
2914	IGCM_debug_Exit "ncpdq"
2915	fi
2916
2917	IGCM_debug_PopStack "IGCM_sys_ncpdq"
2918	}
2919
2920	#D-#==================================================
2921	#D-function IGCM_sys_ncra
2922	#D-* Purpose: encapsulate ncra call so as to manage error code and retry
2923	#D-* Examples:
2924	#D-
2925	function IGCM_sys_ncra {
2926	IGCM_debug_PushStack "IGCM_sys_ncra" -- $@
2927	if ( $DEBUG_sys ) ; then
2928	echo "IGCM_sys_ncra :" $@
2929	fi
2930
2931	typeset NB_ESSAI DELAI status i
2932	# number of tentative
2933	NB_ESSAI=3
2934	# time delay between tentative
2935	DELAI=2
2936
2937	i=0
2938	while [ $i -lt $NB_ESSAI ] ; do
2939	ncra $@ > /tmp/out_command.$$ 2>&1
2940	status=$?
2941	if [ ${status} -gt 0 ] ; then
2942	IGCM_debug_Print 2 "IGCM_sys_ncra : error code ${status}"
2943	cat /tmp/out_command.$$
2944	\rm /tmp/out_command.$$
2945	IGCM_debug_Print 2 "IGCM_sys_ncra : ${i}/${NB_ESSAI} sleep ${DELAI} seconds and try again."
2946	sleep $DELAI
2947	else
2948	\rm /tmp/out_command.$$
2949	break
2950	fi
2951	(( i = i + 1 ))
2952	done
2953
2954	if [ ${status} -gt 0 ] ; then
2955	echo "IGCM_sys_ncra : ncra error"
2956	IGCM_debug_Exit "ncra"
2957	fi
2958
2959	IGCM_debug_PopStack "IGCM_sys_ncra"
2960	}
2961
2962	#D-#==================================================
2963	#D-function IGCM_sys_ncrcat
2964	#D-* Purpose: encapsulate ncrcat call so as to manage error code and retry
2965	#D-* Examples:
2966	#D-
2967	function IGCM_sys_ncrcat {
2968	IGCM_debug_PushStack "IGCM_sys_ncrcat" -- $@
2969	if ( $DEBUG_sys ) ; then
2970	echo "IGCM_sys_ncrcat :" $@
2971	fi
2972
2973	typeset NB_ESSAI DELAI status i lastArg
2974	# number of tentative
2975	NB_ESSAI=3
2976	# time delay between tentative
2977	DELAI=2
2978
2979	i=0
2980	while [ $i -lt $NB_ESSAI ] ; do
2981	ncrcat $@ > /tmp/out_command.$$ 2>&1
2982	status=$?
2983	if [ ${status} -gt 0 ] ; then
2984	IGCM_debug_Print 2 "IGCM_sys_ncrcat : error code ${status}"
2985	cat /tmp/out_command.$$
2986	\rm /tmp/out_command.$$
2987	IGCM_debug_Print 2 "IGCM_sys_ncrcat : ${i}/${NB_ESSAI} sleep ${DELAI} seconds and try again."
2988	sleep $DELAI
2989	elif [ ! "X$( grep "WARNING Intra-file non-monotonicity" /tmp/out_command.$$ )" = "X" ] ; then
2990	IGCM_debug_Print 2 "IGCM_sys_ncrcat : WARNING Intra-file non-monotonicity"
2991	cat /tmp/out_command.$$
2992	# remove files having corrupted time axis
2993	eval lastArg=\${$#}
2994	IGCM_debug_Print 2 "IGCM_sys_ncrcat : Delete ${lastArg}"
2995	\rm ${lastArg}
2996	\rm /tmp/out_command.$$
2997	IGCM_debug_Print 2 "IGCM_sys_ncrcat : ${i}/${NB_ESSAI} sleep ${DELAI} seconds and try again."
2998	sleep $DELAI
2999	else
3000	\rm /tmp/out_command.$$
3001	break
3002	fi
3003	(( i = i + 1 ))
3004	done
3005
3006	if [ ${status} -gt 0 ] ; then
3007	echo "IGCM_sys_ncrcat : ncrcat error"
3008	#IGCM_debug_Exit "ncrcat"
3009	fi
3010
3011	IGCM_debug_PopStack "IGCM_sys_ncrcat"
3012	}
3013
3014	#D-#==================================================
3015	#D-function IGCM_sys_ncrename
3016	#D-* Purpose: encapsulate ncrename call so as to manage error code and retry
3017	#D-* Examples:
3018	#D-
3019	function IGCM_sys_ncrename {
3020	IGCM_debug_PushStack "IGCM_sys_ncrename" -- $@
3021	if ( $DEBUG_sys ) ; then
3022	echo "IGCM_sys_ncrename :" $@
3023	fi
3024
3025	typeset NB_ESSAI DELAI status i
3026	# number of tentative
3027	NB_ESSAI=3
3028	# time delay between tentative
3029	DELAI=2
3030
3031	i=0
3032	while [ $i -lt $NB_ESSAI ] ; do
3033	ncrename $@ > /tmp/out_command.$$ 2>&1
3034	status=$?
3035	if [ ${status} -gt 0 ] ; then
3036	IGCM_debug_Print 2 "IGCM_sys_ncrename : error code ${status}"
3037	cat /tmp/out_command.$$
3038	\rm /tmp/out_command.$$
3039	IGCM_debug_Print 2 "IGCM_sys_ncrename : ${i}/${NB_ESSAI} sleep ${DELAI} seconds and try again."
3040	sleep $DELAI
3041	else
3042	\rm /tmp/out_command.$$
3043	break
3044	fi
3045	(( i = i + 1 ))
3046	done
3047
3048	if [ ${status} -gt 0 ] ; then
3049	echo "IGCM_sys_ncrename : ncrename error"
3050	IGCM_debug_Exit "ncrename"
3051	fi
3052
3053	IGCM_debug_PopStack "IGCM_sys_ncrename"
3054	}
3055
3056	#D-#==================================================
3057	#D-function IGCM_sys_ncwa
3058	#D-* Purpose: encapsulate ncwa call so as to manage error code and retry
3059	#D-* Examples:
3060	#D-
3061	function IGCM_sys_ncwa {
3062	IGCM_debug_PushStack "IGCM_sys_ncwa" -- $@
3063	if ( $DEBUG_sys ) ; then
3064	echo "IGCM_sys_ncwa :" $@
3065	fi
3066
3067	typeset NB_ESSAI DELAI status i
3068	# number of tentative
3069	NB_ESSAI=3
3070	# time delay between tentative
3071	DELAI=2
3072
3073	i=0
3074	while [ $i -lt $NB_ESSAI ] ; do
3075	ncwa $@ > /tmp/out_command.$$ 2>&1
3076	status=$?
3077	if [ ${status} -gt 0 ] ; then
3078	IGCM_debug_Print 2 "IGCM_sys_ncwa : error code ${status}"
3079	cat /tmp/out_command.$$
3080	\rm /tmp/out_command.$$
3081	IGCM_debug_Print 2 "IGCM_sys_ncwa : ${i}/${NB_ESSAI} sleep ${DELAI} seconds and try again."
3082	sleep $DELAI
3083	else
3084	\rm /tmp/out_command.$$
3085	break
3086	fi
3087	(( i = i + 1 ))
3088	done
3089
3090	if [ ${status} -gt 0 ] ; then
3091	echo "IGCM_sys_ncwa : ncwa error"
3092	IGCM_debug_Exit "ncwa"
3093	fi
3094
3095	IGCM_debug_PopStack "IGCM_sys_ncwa"
3096	}
3097
3098	##############################################################
3099	# CDO OPERATOR
3100
3101	#D-#==================================================
3102	#D-function IGCM_sys_cdo
3103	#D-* Purpose: encapsulate cdo call so as to manage error code and retry
3104	#D-* Examples:
3105	#D-
3106	function IGCM_sys_cdo {
3107	IGCM_debug_PushStack "IGCM_sys_cdo" -- $@
3108	if ( $DEBUG_sys ) ; then
3109	echo "IGCM_sys_cdo :" $@
3110	fi
3111
3112	typeset status
3113
3114	\cdo $@ > /tmp/out_command.$$ 2>&1
3115	status=$?
3116	if [ ${status} -gt 0 ] ; then
3117	echo "IGCM_sys_cdo : error code ${status}"
3118	cat /tmp/out_command.$$
3119	\rm /tmp/out_command.$$
3120	IGCM_debug_PopStack "IGCM_sys_cdo"
3121	return 1
3122	else
3123	IGCM_debug_PopStack "IGCM_sys_cdo"
3124	return 0
3125	fi
3126
3127	IGCM_debug_PopStack "IGCM_sys_cdo"
3128	}

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