source: trunk/libIGCM/libIGCM_sys/libIGCM_sys_curie.ksh @ 721

Last change on this file since 721 was 721, checked in by sdipsl, 12 years ago
  • curie : detect spurious warning from nrcat "corrupting" output file's time axis and try again. ncrcat: WARNING Intra-file non-monotonicity. #72
  • Property svn:keywords set to Revision Author Date
File size: 71.3 KB
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1#!/bin/ksh
2
3#**************************************************************
4# Author: Sebastien Denvil, Martial Mancip, Arnaud Caubel
5# Contact: Arnaud.Caubel__at__lsce.ipsl.fr
6# $Revision::                                          $ Revision of last commit
7# $Author::                                            $ Author of last commit
8# $Date::                                              $ Date of last commit
9# IPSL (2006)
10#  This software is governed by the CeCILL licence see libIGCM/libIGCM_CeCILL.LIC
11#
12#**************************************************************
13
14#=========================================================
15# The documentation of this file can be automatically generated
16# if you use the prefix #D- for comments to be extracted.
17# Extract with command: cat lib* | grep "^#D-" | cut -c "4-"
18#=========================================================
19
20#D-#==================================================
21#D-LibIGCM_sys for Curie
22#D-#==================================================
23#D-
24#D- This ksh library if a layer under some usefull
25#D-environment variables and shell commands.
26#D-All those definitions depend on host particularities.
27#D-It manages a stack mechanism and test validity of operations.
28#D-All function described bellow must be prefixed by IGCM_sys.
29
30#====================================================
31# libIGCM_sys PARAMETERS
32#====================================================
33
34#====================================================
35# set DEBUG_sys to true to output calls of function
36typeset -r DEBUG_sys=${DEBUG_sys:=true}
37
38#====================================================
39# Turn in dry run mode ? (sys_Put_Rest, sys_Put_Out, sys_Get)
40typeset -r DRYRUN=${DRYRUN:=0}
41
42# YOU MUST COMPILE YOUR EXE FILES FOR DRYRUN MODE !
43# -------------------------------------------------------------------------------------
44# | DRYRUN=  |  Date computations, | sys_Get    |  Exe    | sys_Put_Out; sys_Put_Rest |
45# |          |  Cp/Exe param files |            |  Chmod  |                           |
46# |          |      Qsub           |            |         |                           |
47# -------------------------------------------------------------------------------------
48# |    0     |       yes           |    yes     |  yes    |      yes                  |
49# -------------------------------------------------------------------------------------
50# |    1     |       yes           |    yes     |  yes    |      no                   |
51# -------------------------------------------------------------------------------------
52# |    2     |       yes           |    yes     |  no     |      no                   |
53# -------------------------------------------------------------------------------------
54# |    3     |       yes           |    no      |  no     |      no                   |
55# -------------------------------------------------------------------------------------
56
57#=====================================================
58# Global Variables :
59#=====================================================
60# Language : "fr" or "en"
61typeset -r MYLANG="fr"
62
63#=====================================================
64# Host and user names
65# $hostname ou hostname
66typeset  HOST=${HOST:=$( hostname )}
67# $username ou whoami
68typeset  LOGIN=${LOGIN:=$( whoami )}
69# $hostname of the MASTER job
70typeset MASTER=curie
71
72#D-
73#D-#==================================================
74#D-Program used in libIGCM
75#D-#==================================================
76
77# rsync with path
78typeset -r RSYNC=/usr/bin/rsync
79# RSYNC_opt args to rsync
80typeset -r RSYNC_opt="-va"
81# ie storage filesystem
82typeset -r STOREHOST=${MASTER}
83
84#====================================================
85# Source default environment
86#====================================================
87##. /etc/profile
88
89#====================================================
90# Set environment tools (ferret, nco, cdo)
91#====================================================
92if [ X${TaskType} = Xcomputing ] ; then
93  . /ccc/cont003/home/dsm/p86ipsl/.atlas_env_calcul_curie_ksh
94else
95  . /ccc/cont003/home/dsm/p86ipsl/.atlas_env_post_curie_ksh
96fi
97
98#====================================================
99# Specific for ocean additionnal diagnostic
100export FER_GO="$FER_GO /home/cont003/p86denv/IGCM_POST_UTIL/JNL /home/cont003/p86denv/GRAF /home/cont003/p86denv/GRAF/GO"
101export FER_PALETTE="$FER_PALETTE /home/cont003/p86denv/GRAF/PALET"
102
103#====================================================
104# Host specific DIRECTORIES
105#====================================================
106
107# ============ CESIUM START ============ #
108
109#====================================================
110#- Mirror libIGCM from titane to cesium if needed
111#ROOTSYS=$( echo ${libIGCM} | gawk -F"/" '{print $3}' )
112#if [ ! ${ROOTSYS} = "home" ] ; then
113#  typeset -r MirrorlibIGCM=${MirrorlibIGCM:=true}
114#else
115#  typeset -r MirrorlibIGCM=${MirrorlibIGCM:=false}
116#fi
117
118#====================================================
119#- libIGCM_POST
120#if ( ${MirrorlibIGCM} ) ; then
121#  PATHlibIGCM=$( echo ${libIGCM} | gawk -F"${LOGIN}/" '{print $2}' | sed -e "s&/libIGCM&&" )
122#  typeset -r libIGCM_POST=${HOME}/MIRROR/${PATHlibIGCM}/libIGCM
123#else
124#  typeset -r libIGCM_POST=${libIGCM}
125#fi
126
127# ============ CESIUM  END  ============ #
128
129#====================================================
130#- MirrorlibIGCM for frontend
131typeset -r MirrorlibIGCM=${MirrorlibIGCM:=false}
132
133#====================================================
134#- libIGCM_POST for frontend
135typeset -r libIGCM_POST=${libIGCM}
136
137#====================================================
138#- R_EXE   (==> BIN_DIR = ${MODIPSL}/bin )
139typeset -r R_EXE="${MODIPSL}/bin"
140
141#====================================================
142#- SUBMIT_DIR : submission dir
143typeset SUBMIT_DIR=${SUBMIT_DIR:=${BRIDGE_MSUB_PWD}}
144
145#====================================================
146#- ARCHIVE (dedicated to large files)
147typeset -r ARCHIVE=${CCCSTOREDIR}
148
149#- ARCHIVE (dedicated to small/medium files)
150typeset -r STORAGE=${CCCWORKDIR}
151
152#====================================================
153#- IN
154typeset -r R_IN=${R_IN:=/ccc/work/cont003/dsm/p86ipsl/IGCM}
155typeset -r R_IN_ECMWF=${R_IN_ECMWF:=/ccc/work/cont003/dsm/p24data}
156
157#====================================================
158#- R_OUT
159typeset -r R_OUT=${ARCHIVE}/IGCM_OUT
160
161#====================================================
162#- R_FIG (hosting figures : monitoring and atlas, and/or small files)
163typeset -r R_FIG=${STORAGE}/IGCM_OUT
164
165#====================================================
166#- R_BUF (ONLY FOR double copy an scratch)
167typeset -r R_BUF=${SCRATCHDIR}/IGCM_OUT
168
169#====================================================
170#- BIG_DIR : BIG_DIR to store files waiting for rebuild
171typeset -r BIG_DIR=${BIG_DIR:=${SCRATCHDIR}/REBUILD}
172
173#====================================================
174#- OUT_POST
175typeset -r R_OUT_POST=${SCRATCHDIR}/IGCM_OUT
176
177#====================================================
178#- RUN_DIR_PATH : Temporary working directory (=> TMP)
179if [ X${TaskType} = Xcomputing ] ; then
180  typeset -r RUN_DIR_PATH=${RUN_DIR_PATH:=${SCRATCHDIR}/RUN_DIR/${BRIDGE_MSUB_JOBID}}
181else
182  typeset -r RUN_DIR_PATH=${RUN_DIR_PATH:=${SCRATCHDIR}/TMPDIR_IGCM/${BRIDGE_MSUB_JOBID}}
183fi
184
185#====================================================
186#- HOST_MPIRUN_COMMAND
187typeset -r HOST_MPIRUN_COMMAND=${HOST_MPIRUN_COMMAND:="/usr/bin/time ccc_mprun"}
188
189#====================================================
190#- Max number of arguments passed to nco operator or demigration command
191UNIX_MAX_LIMIT=360
192
193#====================================================
194#- set PackDefault true on curie
195PackDefault=true
196
197#====================================================
198#- Number of core per node (max number of OpenMP task)
199NUM_COREPERNODE=8
200
201#====================================================
202#- Default number of MPI task for IPSL coupled model
203#- required for backward compatibility
204#-
205DEFAULT_NUM_PROC_OCE=5
206DEFAULT_NUM_PROC_CPL=1
207(( DEFAULT_NUM_PROC_ATM = BATCH_NUM_PROC_TOT - DEFAULT_NUM_PROC_OCE - DEFAULT_NUM_PROC_CPL ))
208DEFAULT_NUM_PROC_TOTAL=${BATCH_NUM_PROC_TOT}
209
210
211#D-#==================================================
212#D-function IGCM_sys_RshMaster
213#D-* Purpose: Connection to frontend machine.
214#D-* Examples:
215#D-
216function IGCM_sys_RshMaster {
217  IGCM_debug_PushStack "IGCM_sys_RshMaster" $@
218  /bin/ksh <<-EOF
219    export libIGCM=${libIGCM}
220    export DEBUG_debug=${DEBUG_debug}
221    . ${libIGCM}/libIGCM_debug/libIGCM_debug.ksh
222    . ${libIGCM}/libIGCM_card/libIGCM_card.ksh
223    ${@}
224EOF
225  if [ $? -gt 0 ] ; then
226    echo "IGCM_sys_RshMaster : erreur."
227    IGCM_debug_Exit "IGCM_sys_RshMaster"
228  fi
229  IGCM_debug_PopStack "IGCM_sys_RshMaster"
230}
231
232#D-#==================================================
233#D-function IGCM_sys_RshArchive
234#D-* Purpose: Archive rsh command
235#D-* Examples:
236#D-
237function IGCM_sys_RshArchive {
238  IGCM_debug_PushStack "IGCM_sys_RshArchive" $@
239  /bin/ksh <<-EOF
240    ${@}
241EOF
242  if [ $? -gt 0 ] ; then
243    echo "IGCM_sys_RshArchive : erreur."
244    IGCM_debug_Exit "IGCM_sys_RshArchive"
245  fi
246  IGCM_debug_PopStack "IGCM_sys_RshArchive"
247}
248
249#D-#==================================================
250#D-function IGCM_sys_RshPost
251#D-* Purpose: Post-process rsh command
252#D-* Examples:
253#D-
254function IGCM_sys_RshPost {
255  IGCM_debug_PushStack "IGCM_sys_RshPost" $@
256  if ( $DEBUG_sys ) ; then
257    echo "IGCM_sys_RshPost :" $@
258  fi
259
260  #echo cat tmp_IGCM_sys_RshPost_$$ INITIAL
261  #cat tmp_IGCM_sys_RshPost_$$
262  # keep standard input (stdin) for the loop onto temporary file
263  cat >tmp_IGCM_sys_RshPost_$$
264
265# ============ FRONTEND START ============ #
266
267  /bin/ksh <tmp_IGCM_sys_RshPost_$$
268  if [ $? -gt 0 ] ; then
269    echo "IGCM_sys_RshPost : erreur."
270    IGCM_debug_Exit "IGCM_sys_RshPost"
271  fi
272  # delete temporary file
273  \rm tmp_IGCM_sys_RshPost_$$
274
275# ============ FRONTEND  END  ============ #
276
277# ============ CESIUM START ============ #
278#  typeset NB_ESSAI DELAI status i
279#  if [ "X$( grep rebuild_from tmp_IGCM_sys_RshPost_$$ )" != "X" ] ; then
280#    #little hack so that rebuild submission is done on titane not an cesium
281#
282#    libIGCM_POST_sed=$( echo $libIGCM_POST | sed 's/\//\\\//g' )
283#    POST_DIR_sed=$( echo ${POST_DIR} | sed 's/\//\\\//g' )
284#    sed "s/IGCM_sys_QsubPost/IGCM_sys_Qsub/g" tmp_IGCM_sys_RshPost_$$ > tmp.txt
285#    sed "s/ rebuild_fromWorkdir/ ${libIGCM_POST_sed}\/rebuild_fromWorkdir.job/g" tmp.txt > tmp_IGCM_sys_RshPost_$$
286#    sed "s/ rebuild_fromArchive/ ${libIGCM_POST_sed}\/rebuild_fromArchive.job/g" tmp_IGCM_sys_RshPost_$$ > tmp.txt
287#    sed "s/Script_Post_Output=/Script_Output=${POST_DIR_sed}\//g" tmp.txt > tmp_IGCM_sys_RshPost_$$
288#    \mv tmp.txt tmp_IGCM_sys_RshPost_$$
289#
290#    echo cat tmp_IGCM_sys_RshPost_$$ AFTER
291#    cat tmp_IGCM_sys_RshPost_$$
292#
293#    /bin/ksh <tmp_IGCM_sys_RshPost_$$
294#    if [ $? -gt 0 ] ; then
295#      echo "IGCM_sys_RshPost : erreur."
296#      IGCM_debug_Exit "IGCM_sys_RshPost"
297#    fi
298#    # delete temporary file
299#    \rm tmp_IGCM_sys_RshPost_$$
300#
301#  else
302#    # number of tentative
303#    NB_ESSAI=10
304#    # time delay between tentative
305#    DELAI=10
306#    i=0
307#    while [ $i -ne $NB_ESSAI ] ; do
308#      ssh -t titane996 ssh cesium /bin/ksh <tmp_IGCM_sys_RshPost_$$
309#      status=$?
310#      if [ ${status} -ne 0 ];
311#      then
312#       sleep $DELAI
313#      else
314#       break
315#      fi
316#      let i=$i+1
317#    done
318#    # delete temporary file
319#    \rm tmp_IGCM_sys_RshPost_$$
320#
321#    if [ ${status} -gt 0 ] ; then
322#      echo "IGCM_sys_RshPost : erreur."
323#      IGCM_debug_Exit "IGCM_sys_RshPost"
324#    fi
325#  fi
326
327# ============ CESIUM  END  ============ #
328
329  IGCM_debug_PopStack "IGCM_sys_RshPost"
330}
331
332#D-#==================================================
333#D-function IGCM_sys_SendMail
334#D-* Purpose: Send mail when simulation is over
335#D-* Examples:
336#D-
337function IGCM_sys_SendMail {
338  IGCM_debug_PushStack "IGCM_sys_SendMail" $@
339  if ( $DEBUG_sys ) ; then
340    echo "IGCM_sys_SendMail :" $@
341  fi
342
343  if ( ${ExitFlag} ) ; then
344    status=failed
345  else
346    status=completed
347  fi
348
349  cat  << END_MAIL > job_end.mail
350Dear ${LOGIN},
351
352  Simulation ${config_UserChoices_JobName} is ${status} on supercomputer `hostname`.
353  Job started : ${DateBegin}
354  Job ended   : ${DateEnd}
355  Output files are available in ${R_SAVE}
356  Files to be rebuild are temporarily available in ${REBUILD_DIR}
357  Pre-packed files are temporarily available in ${R_BUFR}
358  Script files, Script Outputs and Debug files (if necessary) are available in ${SUBMIT_DIR}
359END_MAIL
360
361    if [ ! -z ${config_UserChoices_MailName} ] ; then
362        mail -s "${config_UserChoices_JobName} ${status}" ${config_UserChoices_MailName} < job_end.mail
363    elif [ -f ~/.forward ] ; then
364        mail -s "${config_UserChoices_JobName} ${status}" $( cat ~/.forward ) < job_end.mail
365    fi
366    sleep 10
367    rm -f job_end.mail
368
369  if [ $? -gt 0 ] ; then
370    echo "IGCM_sys_SendMail : erreur."
371    IGCM_debug_Exit "IGCM_sys_SendMail"
372  fi
373  IGCM_debug_PopStack "IGCM_sys_SendMail"
374}
375
376#D-#==================================================
377#D-function IGCM_sys_Mkdir
378#D-* Purpose: Master locale mkdir command
379#D-* Examples:
380#D-
381function IGCM_sys_Mkdir {
382  IGCM_debug_PushStack "IGCM_sys_Mkdir" $@
383  if ( $DEBUG_sys ) ; then
384    echo "IGCM_sys_Mkdir :" $@
385  fi
386  if [ ! -d ${1} ]; then
387    \mkdir -p $1
388    if [ $? -gt 0 ] ; then
389      echo "IGCM_sys_Mkdir : erreur."
390      IGCM_debug_Exit "IGCM_sys_Mkdir"
391    fi
392  fi
393  # vérification :
394  if [ ! -d ${1} ] ; then
395    echo "IGCM_sys_Mkdir : erreur."
396    IGCM_debug_Exit "IGCM_sys_Mkdir"
397  fi
398  IGCM_debug_PopStack "IGCM_sys_Mkdir"
399}
400
401#D-#==================================================
402#D-function IGCM_sys_MkdirArchive
403#D-* Purpose: Mkdir on Archive
404#D-* Examples:
405#D-
406function IGCM_sys_MkdirArchive {
407  IGCM_debug_PushStack "IGCM_sys_MkdirArchive" $@
408  if ( $DEBUG_sys ) ; then
409    echo "IGCM_sys_MkdirArchive :" $@
410  fi
411  #- creation de repertoire sur le serveur fichier
412  if [ ! -d ${1} ]; then
413    \mkdir -p $1
414    if [ $? -gt 0 ] ; then
415      echo "IGCM_sys_MkdirArchive : erreur."
416      IGCM_debug_Exit "IGCM_sys_MkdirArchive"
417    fi
418  fi
419  IGCM_debug_PopStack "IGCM_sys_MkdirArchive"
420}
421
422#D-#==================================================
423#D-function IGCM_sys_MkdirWork
424#D-* Purpose: Mkdir on Work
425#D-* Examples:
426#D-
427function IGCM_sys_MkdirWork {
428  IGCM_debug_PushStack "IGCM_sys_MkdirWork" $@
429  if ( $DEBUG_sys ) ; then
430    echo "IGCM_sys_MkdirWork :" $@
431  fi
432  #- creation de repertoire sur le serveur fichier
433  if [ ! -d ${1} ]; then
434    \mkdir -p $1
435    if [ $? -gt 0 ] ; then
436      echo "IGCM_sys_MkdirWork : erreur."
437      IGCM_debug_Exit "IGCM_sys_MkdirWork"
438    fi
439  fi
440  IGCM_debug_PopStack "IGCM_sys_MkdirWork"
441}
442
443#D-#==================================================
444#D-function IGCM_sys_Cd
445#D-* Purpose: master cd command
446#D-* Examples:
447#D-
448function IGCM_sys_Cd {
449  IGCM_debug_PushStack "IGCM_sys_Cd" $@
450  if ( $DEBUG_sys ) ; then
451    echo "IGCM_sys_Cd :" $@
452  fi
453  \cd $1
454  if [ $? -gt 0 ] ; then
455    echo "IGCM_sys_Cd : erreur."
456    IGCM_debug_Exit "IGCM_sys_Cd"
457  fi
458  IGCM_debug_PopStack "IGCM_sys_Cd"
459}
460
461#D-#==================================================
462#D-function IGCM_sys_Chmod
463#D-* Purpose: Chmod
464#D-* Examples:
465#D-
466function IGCM_sys_Chmod {
467  IGCM_debug_PushStack "IGCM_sys_Chmod" -- $@
468  if ( $DEBUG_sys ) ; then
469    echo "IGCM_sys_Chmod :" $@
470  fi
471  if [ $DRYRUN -le 1 ]; then
472    \chmod $@
473    if [ $? -gt 0 ] ; then
474      echo "IGCM_sys_Chmod : erreur."
475      IGCM_debug_Exit "IGCM_sys_Chmod"
476    fi
477  else
478    ( ${DEBUG_debug} ) && echo "DRYRUN mode = " $DRYRUN >> stack
479  fi
480  IGCM_debug_PopStack "IGCM_sys_Chmod"
481}
482
483#D-#==================================================
484#D-function IGCM_sys_FileSize
485#D-* Purpose: Filesize
486#D-* Examples:
487#D-
488function IGCM_sys_FileSize {
489  IGCM_debug_PushStack "IGCM_sys_FileSize" $@
490
491  typeset sizeF
492  set +A sizeF -- $( ls -la ${1} )
493  if [ $? -gt 0 ] ; then
494    IGCM_debug_Exit "IGCM_sys_FileSize"
495  fi
496  eval ${2}=${sizeF[4]}
497
498  IGCM_debug_PopStack "IGCM_sys_FileSize"
499}
500
501#D-#==================================================
502#D-function IGCM_sys_TestDir
503#D-* Purpose: Test Directory that must exists
504#D-* Examples:
505#D-
506function IGCM_sys_TestDir {
507  IGCM_debug_PushStack "IGCM_sys_TestDir" $@
508  if ( $DEBUG_sys ) ; then
509    echo "IGCM_sys_TestDir :" $@
510  fi
511  typeset ExistFlag
512  ExistFlag=$( [ -d $1 ] && echo 0 || echo 1 )
513  IGCM_debug_PopStack "IGCM_sys_TestDir"
514
515  return ${ExistFlag}
516}
517
518#D-#==================================================
519#D-function IGCM_sys_TestDirArchive
520#D-* Purpose: Test Directory that must exists on Archive
521#D-* Examples:
522#D-
523function IGCM_sys_TestDirArchive {
524  IGCM_debug_PushStack "IGCM_sys_TestDirArchive" $@
525  if ( $DEBUG_sys ) ; then
526    echo "IGCM_sys_TestDirArchive :" $@
527  fi
528  typeset ExistFlag
529  ExistFlag=$( [ -d $1 ] && echo 0 || echo 1 )
530  IGCM_debug_PopStack "IGCM_sys_TestDirArchive"
531
532  return ${ExistFlag}
533}
534
535#D-#==================================================
536#D-function IGCM_sys_IsFileArchived
537#D-* Purpose: Test file that must NOT EXISTS on Archive
538#D-* Examples:
539#D-
540function IGCM_sys_IsFileArchived {
541  IGCM_debug_PushStack "IGCM_sys_IsFileArchived" $@
542  if ( $DEBUG_sys ) ; then
543    echo "IGCM_sys_IsFileArchived :" $@
544  fi
545  typeset IsArchivedFlag
546  IsArchivedFlag=$( [ X$( echo $1 | grep ^\/ccc\/store ) != X ] && echo 0 || echo 1 )
547  IGCM_debug_PopStack "IGCM_sys_IsFileArchived"
548
549  return ${IsArchivedFlag}
550}
551
552#D-#==================================================
553#D-function IGCM_sys_TestFileArchive
554#D-* Purpose: Test file that must NOT EXISTS on Archive
555#D-* Examples:
556#D-
557function IGCM_sys_TestFileArchive {
558  IGCM_debug_PushStack "IGCM_sys_TestFileArchive" $@
559  typeset ExistFlag
560  ExistFlag=$( [ -f $1 ] && echo 0 || echo 1 )
561  IGCM_debug_PopStack "IGCM_sys_TestFileArchive"
562
563  return ${ExistFlag}
564}
565
566#D-#==================================================
567#D-function IGCM_sys_TestFileBuffer
568#D-* Purpose: Test file that must NOT EXISTS on Buffer
569#D-* Examples:
570#D-
571function IGCM_sys_TestFileBuffer {
572  IGCM_debug_PushStack "IGCM_sys_TestFileBuffer" $@
573  typeset ExistFlag
574  ExistFlag=$( [ -f $1 ] && echo 0 || echo 1 )
575  IGCM_debug_PopStack "IGCM_sys_TestFileBuffer"
576
577  return ${ExistFlag}
578}
579
580#D-#==================================================
581#D-function IGCM_sys_CountFileArchive
582#D-* Purpose: Count files on Archive filesystem
583#D-* Examples:
584#D-
585function IGCM_sys_CountFileArchive {
586  IGCM_debug_PushStack "IGCM_sys_CountFileArchive" $@
587  ls ${@} 2>/dev/null | wc -l
588  if [ $? -gt 0 ] ; then
589    echo "IGCM_sys_CountFileArchive : erreur."
590  fi
591  IGCM_debug_PopStack "IGCM_sys_CountFileArchive"
592}
593
594#D-#==================================================
595#D-function IGCM_sys_CountFileBuffer
596#D-* Purpose: Count files on Scratch filesystem
597#D-* Examples:
598#D-
599function IGCM_sys_CountFileBuffer {
600  IGCM_debug_PushStack "IGCM_sys_CountFileBuffer" $@
601  ls ${@} 2>/dev/null | wc -l
602  if [ $? -gt 0 ] ; then
603    echo "IGCM_sys_CountFileBuffer : erreur."
604  fi
605  IGCM_debug_PopStack "IGCM_sys_CountFileBuffer"
606}
607
608#D-#==================================================
609#D-function IGCM_sys_Tree
610#D-* Purpose: Tree directories with files on ${ARCHIVE}
611#D-* Examples: IGCM_sys_Tree ${R_IN} ${R_OUT}
612#D-
613function IGCM_sys_Tree {
614  IGCM_debug_PushStack "IGCM_sys_Tree" $@
615  if ( $DEBUG_sys ) ; then
616    echo "IGCM_sys_Tree :" $@
617  fi
618
619  \ls -lR ${@}
620
621  IGCM_debug_PopStack "IGCM_sys_Tree"
622}
623
624#D-#==================================================
625#D-function IGCM_sys_Tar
626#D-* Purpose: master tar command
627#D-* Examples:
628#D-
629function IGCM_sys_Tar {
630  IGCM_debug_PushStack "IGCM_sys_Tar" $@
631  if ( $DEBUG_sys ) ; then
632    echo "IGCM_sys_Tar :" $@
633  fi
634  \tar cf $@
635  if [ $? -gt 0 ] ; then
636    echo "IGCM_sys_Tar : erreur."
637    IGCM_debug_Exit "IGCM_sys_Tar"
638  fi
639  IGCM_debug_PopStack "IGCM_sys_Tar"
640}
641
642#D-#==================================================
643#D-function IGCM_sys_UnTar
644#D-* Purpose: master un-tar command
645#D-* Examples:
646#D-
647function IGCM_sys_UnTar {
648  IGCM_debug_PushStack "IGCM_sys_UnTar" $@
649  if ( $DEBUG_sys ) ; then
650    echo "IGCM_sys_UnTar :" $@
651  fi
652  \tar xvf $1
653  if [ $? -gt 0 ] ; then
654    echo "IGCM_sys_UnTar : erreur."
655    IGCM_debug_Exit "IGCM_sys_UnTar"
656  fi
657  IGCM_debug_PopStack "IGCM_sys_UnTar"
658}
659
660#D-#==================================================
661#D-function IGCM_sys_Qsub
662#D-* Purpose: Qsub new job
663#D-* Examples:
664#D-
665function IGCM_sys_Qsub {
666  IGCM_debug_PushStack "IGCM_sys_Qsub" $@
667  if ( $DEBUG_sys ) ; then
668    echo "IGCM_sys_Qsub :" $@
669  fi
670  typeset options
671  if [ ${config_UserChoices_JobName}.${CumulPeriod} = "." ] ; then
672    options=" -o ${Script_Output} -e ${Script_Output}"
673  else
674    options=" -o ${Script_Output} -e ${Script_Output} -r ${config_UserChoices_JobName}.${CumulPeriod}"
675  fi
676
677  /usr/bin/ccc_msub ${options} < $1
678  if [ $? -gt 0 ] ; then
679    echo "IGCM_sys_Qsub : erreur ${options} $1"
680    IGCM_debug_Exit "IGCM_sys_Qsub"
681  fi
682  IGCM_debug_PopStack "IGCM_sys_Qsub"
683}
684
685#D-#==================================================
686#D-function IGCM_sys_QsubPost
687#D-* Purpose: Qsub new job on scalaire
688#D-* Examples:
689#D-
690function IGCM_sys_QsubPost {
691  IGCM_debug_PushStack "IGCM_sys_QsubPost" $@
692  if ( $DEBUG_sys ) ; then
693    echo "IGCM_sys_QsubPost :" $@
694  fi
695  /usr/bin/ccc_msub -Q normal -o ${POST_DIR}/${Script_Post_Output}.out -e ${POST_DIR}/${Script_Post_Output}.out ${libIGCM_POST}/$1.job
696  if [ $? -gt 0 ] ; then
697    echo "IGCM_sys_QsubPost : erreur " $@
698    IGCM_debug_Exit "IGCM_sys_QsubPost"
699  fi
700  IGCM_debug_PopStack "IGCM_sys_QsubPost"
701}
702
703#D-*************************
704#D- File transfer functions
705#D-*************************
706#D-
707
708#D-#==================================================
709#D-function IGCM_sys_Rsync_out
710#D-* Purpose: treat return val of rsync
711#D-* Examples: IGCM_sys_Rsync_out out_RET_rsync
712#D-  Error values and explanations can depend on your system version.
713function IGCM_sys_Rsync_out {
714  status=$1
715  if [ ! $status ] ; then
716    echo "rsync error !"
717  fi
718
719  if [ $MYLANG = "fr" ]; then
720    case $status in
721    0)  return ;;
722    1)  echo "Erreur de rsync ; RERR_SYNTAX : "
723      echo "Erreur de syntaxe ou d'utilisation."
724      return;;
725    2)  echo "Erreur de rsync ; RERR_PROTOCOL : "
726      echo "Incompatibilité de protocole."
727      return;;
728    3)  echo "Erreur de rsync ; RERR_FILESELECT 3"
729      echo "Erreurs  lors  de  la  sélection des fichiers d'entrée sortie et"
730      echo "répertoires"
731      return;;
732    4)  echo "Erreur de rsync ; RERR_UNSUPPORTED"
733      echo "Action demandée non supportée : une tentative de manipulation de"
734      echo "fichiers  64-bits  sur une plate-forme qui ne les supporte pas a"
735      echo "été faite ; ou une option qui est supportée par le  client  mais"
736      echo "pas par le serveur a été spécifiée."
737      return;;
738    10) echo "Erreur de rsync ; RERR_SOCKETIO"
739      echo "Erreur dans le socket d'entrée sortie"
740      return;;
741    11) echo "Erreur de rsync ; RERR_FILEIO"
742      echo "Erreur d'entrée sortie fichier"
743      return;;
744    12) echo "Erreur de rsync ; RERR_STREAMIO"
745      echo "Erreur dans flux de donnée du protocole rsync"
746      return;;
747    13) echo "Erreur de rsync ; RERR_MESSAGEIO"
748      echo "Erreur avec les diagnostics du programme"
749      return;;
750    14) echo "Erreur de rsync ; RERR_IPC"
751      echo "Erreur dans le code IPC"
752      return;;
753    20) echo "Erreur de rsync ; RERR_SIGNAL"
754      echo "SIGUSR1 ou SIGINT reçu"
755      return;;
756    21) echo "Erreur de rsync ; RERR_WAITCHILD"
757      echo "Une erreur retournée par waitpid()"
758      return;;
759    22) echo "Erreur de rsync ; RERR_MALLOC"
760      echo "Erreur lors de l'allocation des tampons de mémoire de coeur"
761      return;;
762    23) echo ""
763      echo "Erreur fichier inexistant"
764      return;;
765    30) echo "Erreur de rsync ; RERR_TIMEOUT"
766      echo "Temps d'attente écoulé dans l'envoi/réception de données"
767      return;;
768    *)  echo "Erreur de rsync : code de retour de rsync inconnu :" $status
769      return;;
770    esac
771  elif [ $MYLANG = "en" ] ; then
772    case $status in
773    0)  return;;
774    1)  echo "rsync error : Syntax or usage error "
775      return;;
776    2)  echo "rsync error : Protocol incompatibility "
777      return;;
778    3)  echo "rsync error : Errors selecting input/output files, dirs"
779      return;;
780    4)  echo "rsync error : Requested action not supported: an attempt"
781      echo "was made to manipulate 64-bit files on a platform that cannot support"
782      echo "them; or an option was specified that is supported by the client and"
783      echo "not by the server."
784      return;;
785    5)  echo "rsync error : Error starting client-server protocol"
786      return;;
787    10) echo "rsync error : Error in socket I/O "
788      return;;
789    11) echo "rsync error : Error in file I/O "
790      return;;
791    12) echo "rsync error : Error in rsync protocol data stream "
792      return;;
793    13) echo "rsync error : Errors with program diagnostics "
794      return;;
795    14) echo "rsync error : Error in IPC code "
796      return;;
797    20) echo "rsync error : Received SIGUSR1 or SIGINT "
798      return;;
799    21) echo "rsync error : Some error returned by waitpid() "
800      return;;
801    22) echo "rsync error : Error allocating core memory buffers "
802      return;;
803    23) echo "rsync error : Partial transfer due to error"
804      return;;
805    24) echo "rsync error : Partial transfer due to vanished source files"
806      return;;
807    30) echo "rsync error : Timeout in data send/receive "
808      return;;
809    *)  echo "rsync error : return code of rsync unknown :" $status
810      return;;
811    esac
812  else
813    echo "unknown language $MYLANG."
814    return
815  fi
816}
817
818#D-#==================================================
819#D-function IGCM_sys_Miror_libIGCM
820#D-* Purpose: Mirror libIGCM PATH and lib to cesium
821#D-* Examples:
822#D-
823function IGCM_sys_Mirror_libIGCM {
824  IGCM_debug_PushStack "IGCM_sys_Mirror_libIGCM"
825  if ( $DEBUG_sys ) ; then
826    echo "IGCM_sys_Mirror_libIGCM"
827  fi
828
829  typeset status DEST
830
831  mkdir -p ${HOME}/MIRROR/${PATHlibIGCM}
832
833  echo ${RSYNC} ${RSYNC_opt} ${libIGCM} ${HOME}/MIRROR/${PATHlibIGCM} > out_rsync 2>&1
834  ${RSYNC} ${RSYNC_opt} ${libIGCM} ${HOME}/MIRROR/${PATHlibIGCM} >> out_rsync 2>&1
835  status=$?
836
837  if [ ${status} -gt 0 ] ; then
838    echo "IGCM_sys_Mirror_libIGCM Warning : no libIGCM on cesium."
839    cat out_rsync
840  fi
841  IGCM_debug_PopStack "IGCM_sys_Mirror_libIGCM"
842}
843
844#D-#==================================================
845#D-function IGCM_sys_Cp
846#D-* Purpose: generic cp
847#D-* Examples:
848#D-
849function IGCM_sys_Cp {
850  IGCM_debug_PushStack "IGCM_sys_Cp" $@
851  if ( $DEBUG_sys ) ; then
852    echo "IGCM_sys_Cp :" $@
853  fi
854
855  typeset status
856
857  echo cp $@ > out_rsync 2>&1
858  \cp $@ >> out_rsync 2>&1
859  status=$?
860
861  if [ ${status} -gt 0 ] ; then
862    echo "IGCM_sys_Cp : error code ${status}"
863    cat out_rsync
864    IGCM_debug_Exit "IGCM_sys_Cp"
865  else
866    \rm out_rsync
867  fi
868  IGCM_debug_PopStack "IGCM_sys_Cp"
869}
870
871#D-#==================================================
872#D-function IGCM_sys_Rm
873#D-* Purpose: generic rm
874#D-* Examples:
875#D-
876function IGCM_sys_Rm {
877  IGCM_debug_PushStack "IGCM_sys_Rm" -- $@
878  if ( $DEBUG_sys ) ; then
879    echo "IGCM_sys_Rm :" $@
880  fi
881
882  typeset status
883
884  echo rm $@ > out_rsync 2>&1
885  \rm $@ >> out_rsync 2>&1
886  status=$?
887
888  if [ ${status} -gt 0 ] ; then
889    echo "IGCM_sys_Rm : error code ${status}"
890    cat out_rsync
891    IGCM_debug_Exit "IGCM_sys_Rm"
892  else
893    \rm out_rsync
894  fi
895  IGCM_debug_PopStack "IGCM_sys_Rm"
896}
897
898#D-#==================================================
899#D-function IGCM_sys_RmRunDir
900#D-* Purpose: rm tmpdir (dummy function most of the time batch
901#D-                      scheduler will do the job)
902#D-* Examples:
903#D-
904function IGCM_sys_RmRunDir {
905  IGCM_debug_PushStack "IGCM_sys_RmRunDir" -- $@
906  if ( $DEBUG_sys ) ; then
907    echo "IGCM_sys_RmRunDir :" $@
908  fi
909
910  typeset status
911
912  echo rm $@ > out_rsync 2>&1
913  \rm $@ >> out_rsync 2>&1
914  status=$?
915
916  if [ ${status} -gt 0 ] ; then
917    echo "IGCM_sys_RmRunDir : error code ${status}"
918    cat out_rsync
919    IGCM_debug_Exit "IGCM_sys_RmRunDir"
920  else
921    \rm out_rsync
922  fi
923  IGCM_debug_PopStack "IGCM_sys_RmRunDir"
924}
925
926#D-#==================================================
927#D-function IGCM_sys_Mv
928#D-* Purpose: generic move
929#D-* Examples:
930#D-
931function IGCM_sys_Mv {
932  IGCM_debug_PushStack "IGCM_sys_Mv" $@
933  if ( $DEBUG_sys ) ; then
934    echo "IGCM_sys_Mv :" $@
935  fi
936
937  if [ $DRYRUN = 0 ]; then
938
939    typeset status
940
941    echo mv $@ > out_rsync 2>&1
942    \mv $@ >> out_rsync 2>&1
943    status=$?
944
945    if [ ${status} -gt 0 ] ; then
946      echo "IGCM_sys_Mv : error code ${status}"
947      cat out_rsync
948      IGCM_debug_Exit "IGCM_sys_Mv"
949    else
950      \rm out_rsync
951    fi
952  else
953    ( ${DEBUG_debug} ) && echo "DRYRUN mode = " $DRYRUN >> stack
954  fi
955
956  IGCM_debug_PopStack "IGCM_sys_Mv"
957}
958
959#D-#==================================================
960#D-function IGCM_sys_Put_Dir
961#D-* Purpose: Copy a complete directory on $(ARCHIVE)
962#D-* Examples:
963#D-
964function IGCM_sys_Put_Dir {
965  IGCM_debug_PushStack "IGCM_sys_Put_Dir" $@
966  if ( $DEBUG_sys ) ; then
967    echo "IGCM_sys_Put_Dir :" $@
968  fi
969  if [ $DRYRUN = 0 ]; then
970    if [ ! -d ${1} ] ; then
971      echo "WARNING : IGCM_sys_Put_Dir ${1} DOES NOT EXIST ."
972      IGCM_debug_PopStack "IGCM_sys_Put_Dir"
973      return
974    fi
975
976    typeset status
977
978    # Only if we use rsync
979    #IGCM_sys_TestDirArchive $( dirname $2 )
980    #
981    #USUAL WAY
982    \cp -r $1 $2 > out_rsync 2>&1
983    status=$?
984
985    if [ ${status} -gt 0 ] ; then
986      echo "IGCM_sys_Put_Dir : error code ${status}"
987      cat out_rsync
988      IGCM_debug_Exit "IGCM_sys_Put_Dir"
989    else
990      \rm out_rsync
991    fi
992  else
993    ( ${DEBUG_debug} ) && echo "DRYRUN mode = " $DRYRUN >> stack
994  fi
995  IGCM_debug_PopStack "IGCM_sys_Put_Dir"
996}
997
998#D-#==================================================
999#D-function IGCM_sys_Get_Dir
1000#D-* Purpose: Copy a complete directory from ${ARCHIVE}
1001#D-* Examples:
1002#D-
1003function IGCM_sys_Get_Dir {
1004  IGCM_debug_PushStack "IGCM_sys_Get_Dir" $@
1005  if ( $DEBUG_sys ) ; then
1006    echo "IGCM_sys_Get_Dir :" $@
1007  fi
1008  if [ $DRYRUN = 0 ]; then
1009#    if [ ! -d ${1} ] ; then
1010#      echo "WARNING : IGCM_sys_Get_Dir ${1} DOES NOT EXIST ."
1011#      IGCM_debug_PopStack "IGCM_sys_Get_Dir"
1012#      return
1013#    fi
1014
1015    typeset NB_ESSAI DELAI status i
1016    # number of tentative
1017    NB_ESSAI=3
1018    # time delay between tentative
1019    DELAI=2
1020
1021    # Only if we use rsync
1022    #IGCM_sys_TestDirArchive $( dirname $2 )
1023    #
1024    # USUAL WAY
1025    # add 'ccc_hsm get' (to demigrate all offline files) to reduce time of this command :
1026    ccc_hsm get -r $1
1027
1028    i=0
1029    while [ $i -lt $NB_ESSAI ] ; do
1030      \cp -ur $1 $2 >> out_rsync 2>&1
1031      status=$?
1032      if [ ${status} -gt 0 ]; then
1033        IGCM_debug_Print 2 "IGCM_sys_Get_Dir : cp failed error code ${status} ${i}/${NB_ESSAI}"
1034        IGCM_debug_Print 2 "IGCM_sys_Get_Dir : sleep ${DELAI} seconds and try again."
1035        sleep $DELAI
1036      else
1037        break
1038      fi
1039      (( i = i + 1 ))
1040    done
1041
1042    if [ ${status} -gt 0 ] ; then
1043      echo "IGCM_sys_Get_Dir : error."
1044      cat out_rsync
1045      IGCM_debug_Exit "IGCM_sys_Get_Dir"
1046    else
1047      \rm out_rsync
1048    fi
1049  else
1050    ( ${DEBUG_debug} ) && echo "DRYRUN mode = " $DRYRUN >> stack
1051  fi
1052  IGCM_debug_PopStack "IGCM_sys_Get_Dir"
1053}
1054
1055#D-#==================================================
1056#D-function IGCM_sys_Get_Master
1057#D-* Purpose: Copy a complete directory from MASTER filesystem
1058#D-* Examples:
1059#D-
1060function IGCM_sys_Get_Master {
1061  IGCM_debug_PushStack "IGCM_sys_Get_Master" $@
1062  if ( $DEBUG_sys ) ; then
1063    echo "IGCM_sys_Get_Master :" $@
1064  fi
1065  if [ $DRYRUN = 0 ]; then
1066    if ( [ ! -d ${1} ] && [ ! -f ${1} ] ) ; then
1067      echo "WARNING : IGCM_sys_Get_Master ${1} DOES NOT EXIST ."
1068      IGCM_debug_PopStack "IGCM_sys_Get_Master"
1069      return
1070    fi
1071
1072    typeset NB_ESSAI DELAI status i
1073    # number of tentative
1074    NB_ESSAI=3
1075    # time delay between tentative
1076    DELAI=2
1077
1078    i=0
1079    while [ $i -lt $NB_ESSAI ] ; do
1080      \cp -urL $1 $2 > out_rsync 2>&1
1081      status=$?
1082      if [ ${status} -gt 0 ]; then
1083        IGCM_debug_Print 2 "IGCM_sys_Get_Master : cp failed error code ${status} ${i}/${NB_ESSAI}"
1084        IGCM_debug_Print 2 "IGCM_sys_Get_Master : sleep ${DELAI} seconds and try again."
1085        sleep $DELAI
1086      else
1087        break
1088      fi
1089      (( i = i + 1 ))
1090    done
1091
1092    if [ ${status} -gt 0 ] ; then
1093      echo "IGCM_sys_Get_Master : error."
1094      cat out_rsync
1095      IGCM_debug_Exit "IGCM_sys_Get_Master"
1096    else
1097      \rm out_rsync
1098    fi
1099  else
1100    ( ${DEBUG_debug} ) && echo "DRYRUN mode = " $DRYRUN >> stack
1101  fi
1102  IGCM_debug_PopStack "IGCM_sys_Get_Master"
1103}
1104
1105#====================================================
1106#- Call IGCM_sys_Mirror_libIGCM now !
1107if ( $MirrorlibIGCM ) ; then
1108  IGCM_sys_Mirror_libIGCM
1109fi
1110
1111#D-#==================================================
1112#D-function IGCM_sys_Put_Rest
1113#D-* Purpose: Put computied restarts on ${ARCHIVE}.
1114#D-           File and target directory must exist.
1115#D-* Examples:
1116#D-
1117function IGCM_sys_Put_Rest {
1118  IGCM_debug_PushStack "IGCM_sys_Put_Rest" $@
1119  if ( $DEBUG_sys ) ; then
1120    echo "IGCM_sys_Put_Rest :" $@
1121  fi
1122  if [ $DRYRUN = 0 ]; then
1123    if [ ! -f ${1} ] ; then
1124      echo "ERROR : IGCM_sys_Put_Rest ${1} DOES NOT EXIST ."
1125      IGCM_debug_Exit "IGCM_sys_Put_Rest"
1126    fi
1127
1128    typeset status
1129    #
1130    if [ X${JobType} = XRUN ] ; then
1131      IGCM_sys_Chmod 444 ${1}
1132    fi
1133
1134    #
1135    # USUAL WAY
1136    \cp $1 $2 > out_rsync 2>&1
1137    status=$?
1138
1139#       #RSYNC WITH NETWORK SSH CALL
1140#       echo ${RSYNC} ${RSYNC_opt} -e ssh ${RUN_DIR}/$1 ${STOREHOST}:${2} > out_rsync 2>&1
1141#       ${RSYNC} ${RSYNC_opt} -e ssh ${RUN_DIR}/$1 ${STOREHOST}:${2} >> out_rsync 2>&1
1142
1143#       #RSYNC WITH NFS USE
1144#       echo ${RSYNC} ${RSYNC_opt} ${RUN_DIR}/$1 ${2} > out_rsync 2>&1
1145#       ${RSYNC} ${RSYNC_opt} ${RUN_DIR}/$1 ${2} >> out_rsync 2>&1
1146
1147#       status=$?
1148#       IGCM_sys_Rsync_out $status
1149
1150#       ${libIGCM}/libIGCM_sys/IGCM_analyse_rsync_out.awk out_rsync
1151#       (( status=status+$? ))
1152
1153    if [ ${status} -gt 0 ] ; then
1154      echo "IGCM_sys_Put_Rest : cp failed error code ${status}"
1155      cat out_rsync
1156      IGCM_debug_Exit "IGCM_sys_Put_Rest"
1157    else
1158      \rm out_rsync
1159    fi
1160  else
1161    ( ${DEBUG_debug} ) && echo "DRYRUN mode = " $DRYRUN >> stack
1162  fi
1163  IGCM_debug_PopStack "IGCM_sys_Put_Rest"
1164}
1165
1166#D-#==================================================
1167#D-function IGCM_sys_PutBuffer_Rest
1168#D-* Purpose: Put computied restarts on ${SCRATCHDIR}.
1169#D-           File and target directory must exist.
1170#D-* Examples:
1171#D-
1172function IGCM_sys_PutBuffer_Rest {
1173  IGCM_debug_PushStack "IGCM_sys_PutBuffer_Rest" $@
1174  if ( $DEBUG_sys ) ; then
1175    echo "IGCM_sys_PutBuffer_Rest :" $@
1176  fi
1177  if [ $DRYRUN = 0 ]; then
1178    if [ ! -f ${1} ] ; then
1179      echo "ERROR : IGCM_sys_PutBuffer_Rest ${1} DOES NOT EXIST ."
1180      IGCM_debug_Exit "IGCM_sys_PutBuffer_Rest"
1181    fi
1182
1183    typeset status
1184    #
1185    if [ X${JobType} = XRUN ] ; then
1186      IGCM_sys_Chmod 444 ${1}
1187    fi
1188
1189    #
1190    # USUAL WAY
1191    \cp $1 $2 > out_rsync 2>&1
1192    status=$?
1193
1194    if [ ${status} -gt 0 ] ; then
1195      echo "IGCM_sys_PutBuffer_Rest : error code ${status}"
1196      cat out_rsync
1197      IGCM_debug_Exit "IGCM_sys_PutBuffer_Rest"
1198    else
1199      \rm out_rsync
1200    fi
1201  else
1202    ( ${DEBUG_debug} ) && echo "DRYRUN mode = " $DRYRUN >> stack
1203  fi
1204  IGCM_debug_PopStack "IGCM_sys_PutBuffer_Rest"
1205}
1206
1207#D-#==================================================
1208#D-function IGCM_sys_Put_Out
1209#D-* Purpose: Copy a file on ${ARCHIVE} after having chmod it in readonly
1210#D-* Examples:
1211#D-
1212function IGCM_sys_Put_Out {
1213  IGCM_debug_PushStack "IGCM_sys_Put_Out" $@
1214  if ( $DEBUG_sys ) ; then
1215    echo "IGCM_sys_Put_Out :" $@
1216  fi
1217
1218  typeset NB_ESSAI DELAI status i exist skip
1219
1220  # number of tentative
1221  NB_ESSAI=3
1222  # time delay between tentative
1223  DELAI=2
1224
1225  if [ $DRYRUN = 0 ]; then
1226    if [ ! -f ${1} ] ; then
1227      echo "WARNING : IGCM_sys_Put_Out ${1} DOES NOT EXIST ."
1228      IGCM_debug_PopStack "IGCM_sys_Put_Out"
1229      return 1
1230    fi
1231    #
1232    IGCM_sys_MkdirArchive $( dirname $2 )
1233    #
1234
1235    #=====================================================
1236    #         COMMENT OUT DOUBLE COPY ON SCRATCHDIR
1237    #=====================================================
1238
1239    #echo ${2} | grep "${R_OUT}" > /dev/null 2>&1
1240    #if [ $? -eq 0 ] ; then
1241    #    typeset WORKPATH FILEPATH
1242    #    WORKPATH=$( dirname $2 | sed -e "s|${R_OUT}|${R_BUF}|" )
1243    #    IGCM_sys_MkdirWork ${WORKPATH}
1244    #    FILEPATH=${WORKPATH}/$( basename $2 )
1245    #    #
1246    #    IGCM_sys_Cp ${1} ${FILEPATH}
1247    #fi
1248
1249    if [ X${JobType} = XRUN ] ; then
1250      if [ X${3} = X ] ; then
1251        IGCM_sys_Chmod 444 ${1}
1252      fi
1253    fi
1254    #
1255
1256    exist=false
1257    skip=false
1258    if [ -f $2 ] ; then
1259      IGCM_debug_Print 1 "$2 already exist"
1260      #dmget $2
1261      ccc_hsm get $2
1262      exist=true
1263      if [ "X$( diff $1 $2 )" = X ] ; then
1264        IGCM_debug_Print 2 "$1 and $2 are the same file, we skip the copy"
1265        skip=true
1266      else
1267        IGCM_debug_Print 2 "$1 and $2 are not the same file, we force the copy"
1268        skip=false
1269      fi
1270    fi
1271    #
1272    if ( [ X${exist} = Xtrue ] && [ X${skip} = Xfalse ] ) ; then
1273      IGCM_sys_Chmod u+w $2
1274    fi
1275
1276    if [ X${skip} = Xfalse ] ; then
1277      i=0
1278      while [ $i -lt $NB_ESSAI ] ; do
1279        # USUAL WAY
1280        \cp $1 $2 > out_rsync 2>&1
1281        status=$?
1282        if [ ${status} -gt 0 ]; then
1283          IGCM_debug_Print 2 "IGCM_sys_Put_Out : cp failed error code ${status} ${i}/${NB_ESSAI}"
1284          IGCM_debug_Print 2 "IGCM_sys_Put_Out : sleep ${DELAI} seconds and try again."
1285          sleep $DELAI
1286        else
1287          break
1288        fi
1289        (( i = i + 1 ))
1290      done
1291    fi
1292
1293#       #RSYNC WITH NETWORK SSH CALL
1294#       echo ${RSYNC} ${RSYNC_opt} -e ssh ${RUN_DIR}/$1 ${STOREHOST}:${2} > out_rsync 2>&1
1295#       ${RSYNC} ${RSYNC_opt} -e ssh ${RUN_DIR}/$1 ${STOREHOST}:${2} >> out_rsync 2>&1
1296
1297#       #RSYNC WITH NFS USE
1298#       echo ${RSYNC} ${RSYNC_opt} ${RUN_DIR}/$1 ${2} > out_rsync 2>&1
1299#       ${RSYNC} ${RSYNC_opt} ${RUN_DIR}/$1 ${2} >> out_rsync 2>&1
1300
1301#       status=$?
1302#       IGCM_sys_Rsync_out $status
1303
1304#       ${libIGCM}/libIGCM_sys/IGCM_analyse_rsync_out.awk out_rsync
1305#       (( status=status+$? ))
1306
1307    if [ ${status} -gt 0 ] ; then
1308      echo "IGCM_sys_Put_Out : error."
1309      cat out_rsync
1310      IGCM_debug_Exit "IGCM_sys_Put_Out"
1311    else
1312      \rm out_rsync
1313    fi
1314  else
1315    ( ${DEBUG_debug} ) && echo "DRYRUN mode = " $DRYRUN >> stack
1316  fi
1317  IGCM_debug_PopStack "IGCM_sys_Put_Out"
1318  return 0
1319}
1320
1321#D-#==================================================
1322#D-function IGCM_sys_PutBuffer_Out
1323#D-* Purpose: Copy a file on ${SCRATCHDIR} after having chmod it in readonly
1324#D-* Examples:
1325#D-
1326function IGCM_sys_PutBuffer_Out {
1327  IGCM_debug_PushStack "IGCM_sys_PutBuffer_Out" $@
1328  if ( $DEBUG_sys ) ; then
1329    echo "IGCM_sys_PutBuffer_Out :" $@
1330  fi
1331
1332  typeset NB_ESSAI DELAI status i exist skip
1333
1334  # number of tentative
1335  NB_ESSAI=3
1336  # time delay between tentative
1337  DELAI=2
1338
1339  if [ $DRYRUN = 0 ]; then
1340    if [ ! -f ${1} ] ; then
1341      echo "WARNING : IGCM_sys_PutBuffer_Out ${1} DOES NOT EXIST ."
1342      IGCM_debug_PopStack "IGCM_sys_PutBuffer_Out"
1343      return 1
1344    fi
1345    #
1346    IGCM_sys_Mkdir $( dirname $2 )
1347    #
1348
1349    if [ X${JobType} = XRUN ] ; then
1350      if [ X${3} = X ] ; then
1351        IGCM_sys_Chmod 444 ${1}
1352      fi
1353    fi
1354
1355    exist=false
1356    skip=false
1357    if [ -f $2 ] ; then
1358      IGCM_debug_Print 1 "$2 already exist"
1359      exist=true
1360      if [ "X$( diff $1 $2 )" = X ] ; then
1361        IGCM_debug_Print 2 "$1 and $2 are the same file, we skip the copy"
1362        skip=true
1363      else
1364        IGCM_debug_Print 2 "$1 and $2 are not the same file, we force the copy"
1365        skip=false
1366      fi
1367    fi
1368    #
1369    if ( [ X${exist} = Xtrue ] && [ X${skip} = Xfalse ] ) ; then
1370      IGCM_sys_Chmod u+w $2
1371    fi
1372
1373    if [ X${skip} = Xfalse ] ; then
1374      i=0
1375      while [ $i -lt $NB_ESSAI ] ; do
1376        # USUAL WAY
1377        \cp $1 $2 > out_rsync 2>&1
1378        status=$?
1379        if [ ${status} -gt 0 ]; then
1380          IGCM_debug_Print 2 "IGCM_sys_PutBuffer_Out : cp failed error code ${status} ${i}/${NB_ESSAI}"
1381          IGCM_debug_Print 2 "IGCM_sys_PutBuffer_Out : sleep ${DELAI} seconds and try again."
1382          sleep $DELAI
1383        else
1384          break
1385        fi
1386        (( i = i + 1 ))
1387      done
1388    fi
1389
1390    if [ ${status} -gt 0 ] ; then
1391      echo "IGCM_sys_PutBuffer_Out : error."
1392      cat out_rsync
1393      IGCM_debug_Exit "IGCM_sys_PutBuffer_Out"
1394    else
1395      \rm out_rsync
1396    fi
1397  else
1398    ( ${DEBUG_debug} ) && echo "DRYRUN mode = " $DRYRUN >> stack
1399  fi
1400  IGCM_debug_PopStack "IGCM_sys_PutBuffer_Out"
1401  return 0
1402}
1403
1404#D-#==================================================
1405#D-function IGCM_sys_Get
1406#D-* Purpose: Get a file from ${ARCHIVE}
1407#D-* Examples: IGCM_sys_Get myfile /destpath/myfile_with_PREFIX
1408#D-            IGCM_sys_Get /l Array_contain_myfiles /destpath/
1409function IGCM_sys_Get {
1410  IGCM_debug_PushStack "IGCM_sys_Get" $@
1411
1412  typeset DEST dm_liste ifile target file_work
1413  typeset NB_ESSAI DELAI status i
1414
1415  if ( $DEBUG_sys ) ; then
1416    echo "IGCM_sys_Get :" $@
1417  fi
1418
1419  # number of tentative
1420  NB_ESSAI=3
1421  # time delay between tentative
1422  DELAI=2
1423
1424  if [ $DRYRUN -le 2 ]; then
1425    if [ X${1} = X'/l' ] ; then
1426      # test if the first file is present in the old computation :
1427      eval set +A dm_liste \${${2}}
1428    else
1429      eval set +A dm_liste ${1}
1430    fi
1431    eval DEST=\${${#}}
1432
1433    #=====================================================
1434    #         COMMENT OUT DOUBLE COPY ON SCRATCHDIR
1435    #=====================================================
1436
1437    # Is it an R_OUT file (not R_IN) ?
1438    #echo ${dm_liste[0]} | grep "${R_OUT}" > /dev/null 2>&1
1439    #if [ $? -eq 0 ] ; then
1440    #    # Yes  ? then we try to get it in SCRATCHDIR
1441    #    set +A file_work $( echo ${dm_liste[*]} | sed -e "s|${R_OUT}|${R_BUF}|g" )
1442    #    if [ -f ${file_work[0]} ] ; then
1443    #   IGCM_sys_Cp ${file_work[*]} ${DEST}
1444    #   IGCM_debug_PopStack "IGCM_sys_Get"
1445    #   return
1446    #    fi
1447    #fi
1448
1449    ccc_hsm get ${dm_liste[*]} > out_rsync 2>&1
1450    status=$?
1451    if [ ${status} -gt 0 ] ; then
1452      echo "WARNING IGCM_sys_Get : error code ${status}"
1453      cat out_rsync
1454      echo "WARNING IGCM_sys_Get : will stop later if the cp fails."
1455    fi
1456
1457    #if [ ${status} -gt 0 ] ; then
1458    #    if [ ! "X$( grep "Lost dmusrcmd connection" out_rsync )" = "X" ] ; then
1459    #   cat out_rsync
1460    #   echo "WARNING IGCM_sys_Get : Lost dmusrcmd connection : "
1461    #   sleep 30
1462    #   echo "We try another time"
1463    ##  dmget ${dm_liste[*]} > out_rsync 2>&1
1464    #   ccc_hsm get ${dm_liste[*]} > out_rsync 2>&1
1465    #   status=$?
1466    #   if [ ${status} -gt 0 ] ; then
1467    #       echo "ERROR IGCM_sys_Get : again demigration error :"
1468    #       cat out_rsync
1469    #       IGCM_debug_Exit "IGCM_sys_Get"
1470    #   fi
1471    #    else
1472    #   echo "ERROR IGCM_sys_Get : demigration error :"
1473    #   cat out_rsync
1474    #   IGCM_debug_Exit "IGCM_sys_Get"
1475    #    fi
1476    #fi
1477
1478    #   #RSYNC WITH NETWORK SSH CALL
1479    #   echo ${RSYNC} ${RSYNC_opt} -e ssh ${STOREHOST}:"${dm_liste}" ${STOREHOST}:${RUN_DIR}/${DEST} > out_rsync 2>&1
1480    #   ${RSYNC} ${RSYNC_opt} -e ssh ${STOREHOST}:"${dm_liste}" ${STOREHOST}:${RUN_DIR}/${DEST} >> out_rsync 2>&1
1481
1482    #   #RSYNC WITH NFS USE
1483    #   echo ${RSYNC} ${RSYNC_opt} ${dm_liste} ${RUN_DIR}/${DEST} > out_rsync 2>&1
1484    #   ${RSYNC} ${RSYNC_opt} ${dm_liste} ${RUN_DIR}/${DEST} >> out_rsync 2>&1
1485
1486    #   status=$?
1487    #   IGCM_sys_Rsync_out $status
1488
1489    #   ${libIGCM}/libIGCM_sys/IGCM_analyse_rsync_out.awk out_rsync
1490    #   (( status=status+$? ))
1491
1492    #USUAL WAY
1493    if [ X${1} = X'/l' ] ; then
1494      for target in ${dm_liste[*]} ; do
1495        local_file=$( basename ${target} )
1496        # test if the target file is present before the loop
1497        IGCM_sys_TestFileArchive ${target}
1498        status=$?
1499        if [ ${status} -gt 0 ] ; then
1500          echo "IGCM_sys_Get, ERROR : regular file ${target} DOES NOT EXIST ."
1501          IGCM_debug_Exit "IGCM_sys_Get"
1502        else
1503          i=0
1504          while [ $i -lt $NB_ESSAI ] ; do
1505            \cp ${target} ${DEST}/${local_file} >> out_rsync 2>&1
1506            status=$?
1507            if [ ${status} -gt 0 ]; then
1508              IGCM_debug_Print 2 "IGCM_sys_Get : cp failed error code ${status} ${i}/${NB_ESSAI}"
1509              IGCM_debug_Print 2 "IGCM_sys_Get : sleep ${DELAI} seconds and try again."
1510              sleep $DELAI
1511            else
1512              break
1513            fi
1514            (( i = i + 1 ))
1515          done
1516          if [ ${status} -gt 0 ] ; then
1517            echo "IGCM_sys_Get : error"
1518            cat out_rsync
1519            \rm out_rsync
1520            IGCM_debug_Exit "IGCM_sys_Get"
1521          else
1522            \rm out_rsync
1523          fi
1524        fi
1525      done
1526    else
1527      i=0
1528      while [ $i -lt $NB_ESSAI ] ; do
1529        \cp ${dm_liste} ${DEST} >> out_rsync 2>&1
1530        status=$?
1531        if [ ${status} -gt 0 ]; then
1532          IGCM_debug_Print 2 "IGCM_sys_Get : cp failed error code ${status} ${i}/${NB_ESSAI}"
1533          IGCM_debug_Print 2 "IGCM_sys_Get : sleep ${DELAI} seconds and try again."
1534          sleep $DELAI
1535        else
1536          break
1537        fi
1538        (( i = i + 1 ))
1539      done
1540      if [ ${status} -gt 0 ] ; then
1541        echo "IGCM_sys_Get : error"
1542        cat out_rsync
1543        \rm out_rsync
1544        IGCM_debug_Exit "IGCM_sys_Get"
1545      else
1546        \rm out_rsync
1547      fi
1548    fi
1549  else
1550    ( ${DEBUG_debug} ) && echo "DRYRUN mode = " $DRYRUN >> stack
1551  fi
1552  IGCM_debug_PopStack "IGCM_sys_Get"
1553}
1554
1555#D-#==================================================
1556#D-function IGCM_sys_GetBuffer
1557#D-* Purpose: Get a file from ${SCRATCHDIR}
1558#D-* Examples: IGCM_sys_GetBuffer myfile /destpath/myfile_with_PREFIX
1559#D-            IGCM_sys_GetBuffer /l Array_contain_myfiles /destpath/
1560function IGCM_sys_GetBuffer {
1561  IGCM_debug_PushStack "IGCM_sys_GetBuffer" $@
1562
1563  typeset DEST buf_liste ifile target file_work
1564  typeset NB_ESSAI DELAI status i
1565
1566  if ( $DEBUG_sys ) ; then
1567    echo "IGCM_sys_GetBuffer :" $@
1568  fi
1569
1570  # number of tentative
1571  NB_ESSAI=3
1572  # time delay between tentative
1573  DELAI=2
1574
1575  if [ $DRYRUN -le 2 ]; then
1576    if [ X${1} = X'/l' ] ; then
1577      # test if the first file is present in the old computation :
1578      eval set +A buf_liste \${${2}}
1579    else
1580      eval set +A buf_liste ${1}
1581    fi
1582    eval DEST=\${${#}}
1583
1584    #USUAL WAY
1585    if [ X${1} = X'/l' ] ; then
1586      for target in ${buf_liste[*]} ; do
1587        local_file=$( basename ${target} )
1588        i=0
1589        while [ $i -lt $NB_ESSAI ] ; do
1590          \cp ${target} ${DEST}/${local_file} >> out_rsync 2>&1
1591          status=$?
1592          if [ ${status} -gt 0 ]; then
1593            IGCM_debug_Print 2 "IGCM_sys_GetBuffer : cp failed error code ${status} ${i}/${NB_ESSAI}"
1594            IGCM_debug_Print 2 "IGCM_sys_GetBuffer : sleep ${DELAI} seconds and try again."
1595            sleep $DELAI
1596          else
1597            break
1598          fi
1599          (( i = i + 1 ))
1600        done
1601        if [ ${status} -gt 0 ] ; then
1602          echo "IGCM_sys_Get : error"
1603          cat out_rsync
1604          \rm out_rsync
1605          IGCM_debug_Exit "IGCM_sys_GetBuffer"
1606        else
1607          \rm out_rsync
1608        fi
1609      done
1610    else
1611      i=0
1612      while [ $i -lt $NB_ESSAI ] ; do
1613        \cp ${buf_liste} ${DEST} >> out_rsync 2>&1
1614        status=$?
1615        if [ ${status} -gt 0 ]; then
1616          IGCM_debug_Print 2 "IGCM_sys_GetBuffer : cp failed error code ${status} ${i}/${NB_ESSAI}"
1617          IGCM_debug_Print 2 "IGCM_sys_GetBuffer : sleep ${DELAI} seconds and try again."
1618          sleep $DELAI
1619        else
1620          break
1621        fi
1622        (( i = i + 1 ))
1623      done
1624      if [ ${status} -gt 0 ] ; then
1625        echo "IGCM_sys_Get : error"
1626        cat out_rsync
1627        \rm out_rsync
1628        IGCM_debug_Exit "IGCM_sys_GetBuffer"
1629      else
1630        \rm out_rsync
1631      fi
1632    fi
1633  else
1634    ( ${DEBUG_debug} ) && echo "DRYRUN mode = " $DRYRUN >> stack
1635  fi
1636  IGCM_debug_PopStack "IGCM_sys_GetBuffer"
1637}
1638
1639#D-#==================================================
1640#D-function IGCM_sys_GetDate_FichWork
1641#D-* Purpose: donne la date filesys d'un fichier sur le filesystem WORK
1642#D-* Examples:
1643#D-
1644function IGCM_sys_GetDate_FichWork {
1645  IGCM_debug_PushStack "IGCM_sys_FichWork" $@
1646  if ( $DEBUG_sys ) ; then
1647    echo "IGCM_sys_GetDate_FichWork :" $@
1648  fi
1649  typeset dateF
1650  set +A dateF -- $( ls -l --full-time --time-style='+%Y%m%d%H%M%S' ${1} )
1651  eval ${2}=${dateF[5]}
1652
1653    # donne la date filesys d'un fichier sur la machine work
1654  IGCM_debug_PopStack "IGCM_sys_FichWork"
1655}
1656
1657#D-#==================================================
1658#D-function IGCM_sys_GetDate_FichArchive
1659#D-* Purpose: donne la date filesys d'un fichier sur le filesystem ARCHIVE
1660#D-* Examples:
1661#D-
1662function IGCM_sys_GetDate_FichArchive {
1663  IGCM_debug_PushStack "IGCM_sys_FichArchive" $@
1664  if ( $DEBUG_sys ) ; then
1665    echo "IGCM_sys_GetDate_FichArchive :" $@
1666  fi
1667  typeset dateF
1668  set +A dateF -- $( ls -l --full-time --time-style='+%Y%m%d%H%M%S' ${1} )
1669  eval ${2}=${dateF[5]}
1670
1671  IGCM_debug_PopStack "IGCM_sys_FichArchive"
1672}
1673
1674#D-#==================================================
1675#D-function IGCM_sys_Dods_Rm
1676#D-* Purpose: DO NOTHING ! Put ${ARCHIVE} files on DODS internet protocole.
1677#D-* Examples:
1678#D-
1679function IGCM_sys_Dods_Rm {
1680  if ( $DEBUG_sys ) ; then
1681    echo "IGCM_sys_Dods_Rm :" $@
1682  fi
1683  typeset status
1684  if [ $DRYRUN = 0 ]; then
1685
1686#    if [ ! -d /dmnfs/cont003/dods/public/${LOGIN}/${R_DODS}/${1} ] ; then
1687#      echo "WARNING : IGCM_sys_Dods_Rm /dmnfs/cont003/dods/public/${LOGIN}/${R_DODS}/${1} DOES NOT EXIST ."
1688#      echo "Nothing has been done."
1689#      return
1690#    fi
1691
1692    /ccc/cont003/home/dsm/p86ipsl/bin/dods_rm public/${LOGIN}/${R_DODS}/${1} # > out_dods_rm 2>&1
1693    status=$?
1694
1695#       if [ ${status} -gt 0 ] ; then
1696#           echo "IGCM_sys_Dods_Rm : error."
1697#           cat out_dods_rm
1698#           IGCM_debug_Exit "IGCM_sys_Dods_Rm"
1699#       else
1700#           rm out_dods_rm
1701#       fi
1702
1703  else
1704    ( ${DEBUG_debug} ) && echo "DRYRUN mode = " $DRYRUN >> stack
1705  fi
1706  return $status
1707}
1708
1709#D-#==================================================
1710#D-function IGCM_sys_Dods_Cp
1711#D-* Purpose: Copy $(ARCHIVE) files on DODS internet protocole.
1712#D-* Examples:
1713#D-
1714function IGCM_sys_Dods_Cp {
1715  if ( $DEBUG_sys ) ; then
1716    echo "IGCM_sys_Dods_Cp :" $@
1717  fi
1718  typeset status
1719  if [ $DRYRUN = 0 ]; then
1720
1721#    if [ ! -d ${R_SAVE}/${1} ] ; then
1722#      echo "WARNING : IGCM_sys_Dods_Cp ${R_SAVE}/${1} DOES NOT EXIST ."
1723#      echo "Nothing has been done."
1724#      return
1725#    fi
1726
1727    /ccc/cont003/home/dsm/p86ipsl/bin/dods_cp ${1} public/${LOGIN}/${R_DODS} # > out_dods_cp 2>&1
1728    status=$?
1729
1730#       if [ ${status} -gt 0 ] ; then
1731#           echo "IGCM_sys_Dods_Cp : error."
1732#           cat out_dods_cp
1733#           IGCM_debug_Exit "IGCM_sys_Dods_Cp"
1734#       else
1735#           rm out_dods_cp
1736#       fi
1737
1738  else
1739    ( ${DEBUG_debug} ) && echo "DRYRUN mode = " $DRYRUN >> stack
1740  fi
1741  return $status
1742}
1743
1744#D-#==================================================
1745#D-function IGCM_sys_Put_Dods
1746#D-* Purpose: Put $(ARCHIVE) files on DODS internet protocole.
1747#D-* Examples:
1748#D-
1749function IGCM_sys_Put_Dods {
1750  IGCM_debug_PushStack "IGCM_sys_Put_Dods" $@
1751  if ( $DEBUG_sys ) ; then
1752    echo "IGCM_sys_Put_Dods :" $@
1753  fi
1754  #set -vx
1755  typeset status
1756  if [ $DRYRUN = 0 ]; then
1757    if ( [ ! -d ${R_SAVE}/${1} ] && [ ! -d ${R_FIGR}/${1} ] ) ; then
1758      echo "WARNING IGCM_sys_Put_Dods : None of the following directories exist. Exactly one should."
1759      echo "WARNING IGCM_sys_Put_Dods : ${R_SAVE}/${1} DOES NOT EXIST."
1760      echo "WARNING IGCM_sys_Put_Dods : ${R_FIGR}/${1} DOES NOT EXIST."
1761      IGCM_debug_PopStack "IGCM_sys_Put_Dods"
1762      return
1763    fi
1764
1765    if ( [ -d ${R_SAVE}/${1} ] && [ -d ${R_FIGR}/${1} ] ) ; then
1766      echo "WARNING IGCM_sys_Put_Dods : Both of the following directories exist. Exactly one should."
1767      echo "WARNING IGCM_sys_Put_Dods : ${R_SAVE}/${1} EXISTS."
1768      echo "WARNING IGCM_sys_Put_Dods : ${R_FIGR}/${1} EXISTS."
1769      IGCM_debug_PopStack "IGCM_sys_Put_Dods"
1770      return
1771    fi
1772    #
1773    if [ -d ${R_SAVE}/${1} ] ; then
1774      cd ${R_SAVE}
1775    elif [ -d ${R_FIGR}/${1} ] ; then
1776      cd ${R_FIGR}
1777    fi
1778
1779    IGCM_sys_Dods_Rm ${1}
1780    IGCM_sys_Dods_Cp ${1}
1781    status=0
1782
1783    if [ ${status} -gt 0 ] ; then
1784      echo "IGCM_sys_Put_Dods : error."
1785      IGCM_debug_Exit "IGCM_sys_Put_Dods"
1786    fi
1787  else
1788    ( ${DEBUG_debug} ) && echo "DRYRUN mode = " $DRYRUN >> stack
1789  fi
1790  IGCM_debug_PopStack "IGCM_sys_Put_Dods"
1791}
1792
1793##############################################################
1794# REBUILD OPERATOR
1795
1796function IGCM_sys_rebuild {
1797  IGCM_debug_PushStack "IGCM_sys_rebuild" -- $@
1798  if ( $DEBUG_sys ) ; then
1799    echo "IGCM_sys_rebuild :" $@
1800  fi
1801
1802  typeset NB_ESSAI DELAI status i
1803  # number of tentative
1804  NB_ESSAI=3
1805  # time delay between tentative
1806  DELAI=2
1807
1808  i=0
1809  while [ $i -lt $NB_ESSAI ] ; do
1810    ~p86ipsl/CESIUM/bin/rebuild -f -o $@ > out_rsync 2>&1
1811    status=$?
1812    if [ ${status} -gt 0 ] ; then
1813      IGCM_debug_Print 2 "IGCM_sys_rebuild : error code ${status}"
1814      cat out_rsync
1815      \rm out_rsync
1816      IGCM_debug_Print 2 "IGCM_sys_rebuild : ${i}/${NB_ESSAI} sleep ${DELAI} seconds and try again."
1817    else
1818      \rm out_rsync
1819      break
1820    fi
1821    (( i = i + 1 ))
1822  done
1823
1824  if [ $? -gt 0 ] ; then
1825    echo "IGCM_sys_rebuild : rebuild error"
1826    IGCM_debug_Exit "rebuild"
1827  fi
1828
1829  IGCM_debug_PopStack "IGCM_sys_rebuild"
1830}
1831
1832function IGCM_sys_rebuild_station {
1833  IGCM_debug_PushStack "IGCM_sys_rebuild_station" -- $@
1834  typeset i list_opt file_in file_out prefix_invert list_invert
1835  if ( $DEBUG_sys ) ; then
1836    echo "IGCM_sys_rebuild_station :" $@
1837  fi
1838  list_opt=$@
1839
1840  # Invert Axis : t,x -> x,t
1841  #               t,pres,x -> x,t,pres
1842  # So that we can concatenate along x
1843  i=0
1844  for file_in in ${list_opt} ; do
1845    (( i = i + 1))
1846    [ ${i} = 1 ] && file_out=${file_in} && continue
1847    prefix_invert=$( basename ${file_in} .nc )
1848    IGCM_sys_ncpdq -a x,time_counter -a x,time_counter,presnivs ${file_in} ${prefix_invert}_xt.nc
1849    list_invert[${#list_invert[*]}]=${prefix_invert}_xt.nc
1850  done
1851
1852  # Concatenate
1853  IGCM_sys_ncrcat ${list_invert[*]} histstn_xt.nc
1854
1855  # Re-ivert file
1856  IGCM_sys_ncpdq -a time_counter,x -a time_counter,presnivs,x histstn_xt.nc ${file_out}
1857
1858  # Station re-ordering is too expansive to be run within libICGM
1859  # This is due to (ncpdq - nrcat - ncpdq) I/O sequence.
1860  # This re-ordering must be done "in memory" by the cmorization process
1861  # Anyway this is the best sequence using (ncpdq - nrcat - ncpdq)
1862  # BEGIN reordering
1863
1864  # Only LMDZ text output contains the exact ordering of the station.
1865  # We isolate this in the code below:
1866  #  0  38  -157.5000000000000  70.98591549295774
1867  #  0  54  27.49999999999999   67.18309859154928
1868  #  0  56  -62.50000000000001  82.39436619718309
1869  #  0  79  12.49999999999999   78.59154929577466
1870  #  0  116 -165.0000000000000  76.05633802816901
1871  #  0  117 130.0000000000000   70.98591549295774
1872  #  0  118 110.0000000000000   87.46478873239437
1873  #  1  40  4.999999999999995   51.97183098591550
1874#  typeset iStation iProc list_opt file_in file_out prefix_invert
1875#  typeset -Z4 j4
1876#  typeset -Z3 j3
1877
1878#  unset list_opt
1879#  set +A list_opt $@
1880
1881  # Filename after rebuild
1882#  file_out=${list_opt[0]}
1883  # Prefix of output files
1884#  prefix_invert=$( basename ${file_out} .nc )
1885  # Number of procs
1886#  num_proc=$( grep -i mpi_size ${PREFIX}_${Exe_Output} | wc -l )
1887
1888#  iProc=0
1889#  while [ ${iProc} -lt ${num_proc} ] ; do
1890    # Array containing Station as a number
1891#    unset proc_stn
1892#    set +A proc_stn $( grep "iophy_mpi rank ip lon lat  $iProc" ${PREFIX}_${Exe_Output} | sed -e "s/iophy_mpi rank ip lon lat //g" | awk ' {print $2}' )
1893    # Number of stations produced by processor proc
1894#    stationLast=${#proc_stn[*]}
1895    # Proc number on 4 digits
1896#    j4=${iProc}
1897    # Init
1898#    iStation=0
1899#    while [ ${iStation} -lt ${stationLast} ] ; do
1900      # Station number on 3 digits
1901#      j3=${proc_stn[${iStation}]}
1902      # Extract station
1903      # Invert Axis : t,x -> x,t
1904      #               t,pres,x -> x,t,pres
1905      # So that we can concatenate along x
1906#      IGCM_sys_ncpdq -a x,time_counter -a x,time_counter,presnivs -d x,$iStation,$iStation ${prefix_invert}_${j4}.nc ${prefix_invert}_stn_${j3}.nc
1907#      (( iStation = iStation + 1 ))
1908#    done
1909#    (( iProc = iProc + 1 ))
1910#  done
1911
1912  # Concatenate all station along x
1913#  IGCM_sys_ncrcat ${prefix_invert}_stn_???.nc ${prefix_invert}_xt.nc
1914
1915  # Re-invert file
1916#  IGCM_sys_ncpdq -a time_counter,x -a time_counter,presnivs,x ${prefix_invert}_xt.nc ${file_out}
1917
1918  # END reordering
1919
1920  IGCM_debug_PopStack "IGCM_sys_rebuild_station"
1921}
1922
1923############################################################
1924# Activate Running Environnment Variables
1925
1926function IGCM_sys_activ_variables {
1927  IGCM_debug_PushStack "IGCM_sys_activ_variables"
1928  if ( $DEBUG_sys ) ; then
1929    echo "IGCM_sys_activ_variables"
1930  fi
1931
1932  ulimit -s unlimited
1933
1934  IGCM_debug_PopStack "IGCM_sys_activ_variables"
1935}
1936
1937############################################################
1938# Desactivate Running Environnment Variables
1939
1940function IGCM_sys_desactiv_variables {
1941  IGCM_debug_PushStack "IGCM_sys_desactiv_variables"
1942  if ( $DEBUG_sys ) ; then
1943    echo "IGCM_sys_desactiv_variables"
1944  fi
1945  IGCM_debug_PopStack "IGCM_sys_desactiv_variables"
1946}
1947
1948############################################################
1949# Build MPI/OMP scripts run file (dummy function)
1950
1951function IGCM_sys_build_run_file {
1952
1953IGCM_debug_Print 3 " dummy function : IGCM_sys_build_run_file "
1954
1955}
1956
1957############################################################
1958# Build MPI/OMP scripts
1959function IGCM_sys_build_execution_scripts
1960{
1961  IGCM_debug_PushStack "IGCM_sys_build_execution_scripts" $@
1962  if ( $DEBUG_sys ) ; then
1963    echo "IGCM_sys_build_execution_scripts " $@
1964  fi
1965
1966    # Verification with MSUB parameter
1967  EXECUTION=${HOST_MPIRUN_COMMAND}
1968
1969  if ( ${OK_PARA_MPMD} ) ; then
1970
1971    if [ -f run_file ] ; then
1972      IGCM_sys_Rm -f run_file
1973    fi
1974    touch run_file
1975
1976# run_file construction
1977
1978# Then first loop on the components for the coupler ie oasis
1979
1980### the coupler ie oasis must be the first one
1981    for comp in ${config_ListOfComponents[*]} ; do
1982
1983      eval ExeNameIn=\${config_Executable_${comp}[0]}
1984      eval ExeNameOut=\${config_Executable_${comp}[1]}
1985
1986        # for CPL component only
1987      if [ "X${comp}" = "XCPL" ] ; then
1988
1989        eval comp_proc_mpi_loc=\${${comp}_PROC_MPI}
1990        eval comp_proc_omp_loc=\${${comp}_PROC_OMP}
1991        echo "${comp_proc_mpi_loc} ./${ExeNameOut}" >> run_file
1992      fi
1993    done
1994
1995# Then second loop on the components
1996
1997    for comp in ${config_ListOfComponents[*]} ; do
1998
1999      eval ExeNameIn=\${config_Executable_${comp}[0]}
2000      eval ExeNameOut=\${config_Executable_${comp}[1]}
2001
2002        # Only if we really have an executable for the component and not the coupler ie oasis:
2003      if ( [ "X${ExeNameOut}" != X\"\" ] && [ "X${comp}" != "XCPL" ] ) ; then
2004
2005        eval comp_proc_mpi_loc=\${${comp}_PROC_MPI}
2006        eval comp_proc_omp_loc=\${${comp}_PROC_OMP}
2007        echo "${comp_proc_mpi_loc} ./${ExeNameOut}" >> run_file
2008      fi
2009    done
2010
2011    EXECUTION="${HOST_MPIRUN_COMMAND} -f ./run_file"
2012
2013    IGCM_sys_Chmod u+x run_file
2014    if ( $DEBUG_sys ) ; then
2015      echo "run_file contains : "
2016      cat run_file
2017    fi
2018
2019  else # Only one executable. launch it.
2020
2021    #
2022    for comp in ${config_ListOfComponents[*]} ; do
2023
2024      # Only if we really have an executable for the component :
2025      eval ExeNameOut=\${config_Executable_${comp}[1]}
2026      if ( [ "X${ExeNameOut}" != X\"\" ] && [ "X${ExeNameOut}" != "Xinca.dat" ] ) ; then
2027
2028        echo "#!/bin/ksh" > script_${ExeNameOut}.ksh
2029        echo ""  >> script_${ExeNameOut}.ksh
2030        IGCM_sys_Chmod u+x script_${ExeNameOut}.ksh
2031
2032        if ( ${OK_PARA_OMP} ) ; then
2033          eval comp_proc_omp_loc=\${${comp}_PROC_OMP}
2034          echo ""  >> script_${ExeNameOut}.ksh
2035          echo "export KMP_STACKSIZE=3g"  >> script_${ExeNameOut}.ksh
2036          echo "export KMP_LIBRARY=turnaround"  >> script_${ExeNameOut}.ksh
2037          echo "export MKL_SERIAL=YES"  >> script_${ExeNameOut}.ksh
2038          echo "OMP_NUM_THREADS=${comp_proc_omp_loc}" >> script_${ExeNameOut}.ksh
2039        fi
2040
2041        if  ( ${OK_PARA_MPI} ) ; then
2042          eval comp_proc_mpi_loc=\${${comp}_PROC_MPI}
2043          # Default : ccc_mprun used if nb_proc gt 1
2044          # to have out/err per process on different files
2045          # echo "./${ExeNameOut} > out_${ExeNameOut}.out.\${SLURM_PROCID} 2>out_${ExeNameOut}.err.\${SLURM_PROCID}"  >> script_${ExeNameOut}.ksh
2046          echo "./${ExeNameOut}" >> script_${ExeNameOut}.ksh
2047          EXECUTION="${HOST_MPIRUN_COMMAND} -n ${comp_proc_mpi_loc} ./script_${ExeNameOut}.ksh"
2048        else
2049          # Default : ccc_mprun is NOT used if nb_proc eq 1
2050          # to have out/err per process on different files
2051          # echo "./${ExeNameOut} > out_${ExeNameOut}.out 2>out_${ExeNameOut}.err" >> script_${ExeNameOut}.ksh
2052          echo "./${ExeNameOut}" >> script_${ExeNameOut}.ksh
2053          EXECUTION="/usr/bin/time ./script_${ExeNameOut}.ksh"
2054        fi
2055
2056        IGCM_debug_Print 1 "sys Curie : script_${ExeNameOut}.ksh contains"
2057        cat script_${ExeNameOut}.ksh
2058
2059      fi
2060
2061    done
2062
2063  fi
2064
2065  IGCM_debug_Print 1 "sys Curie : execution command is "
2066  IGCM_debug_Print 1 "$EXECUTION"
2067
2068  IGCM_debug_PopStack "IGCM_sys_build_execution_scripts"
2069}
2070
2071############################################################
2072# Check of space available on temporary filesytems
2073function IGCM_sys_check_quota {
2074    IGCM_debug_PushStack "IGCM_sys_check_quota"
2075    if ( $DEBUG_sys ) ; then
2076        echo "IGCM_sys_check_quota"
2077    fi
2078    IGCM_debug_PopStack "IGCM_sys_check_quota"
2079}
2080
2081##############################################################
2082# NCO OPERATOR
2083
2084function IGCM_sys_ncap2 {
2085  IGCM_debug_PushStack "IGCM_sys_ncap2" -- $@
2086  if ( $DEBUG_sys ) ; then
2087    echo "IGCM_sys_ncap2 :" $@
2088  fi
2089
2090  typeset NB_ESSAI DELAI status i
2091  # number of tentative
2092  NB_ESSAI=3
2093  # time delay between tentative
2094  DELAI=2
2095
2096  i=0
2097  while [ $i -lt $NB_ESSAI ] ; do
2098    ncap2 "$@" > out_rsync 2>&1
2099    status=$?
2100    if [ ${status} -gt 0 ] ; then
2101      IGCM_debug_Print 2 "IGCM_sys_ncap2 : error code ${status}"
2102      cat out_rsync
2103      \rm out_rsync
2104      IGCM_debug_Print 2 "IGCM_sys_ncap2 : ${i}/${NB_ESSAI} sleep ${DELAI} seconds and try again."
2105    else
2106      \rm out_rsync
2107      break
2108    fi
2109    (( i = i + 1 ))
2110  done
2111
2112  if [ ${status} -gt 0 ] ; then
2113      echo "IGCM_sys_ncap2 : ncap2 error"
2114      IGCM_debug_Exit "ncap2"
2115  fi
2116
2117  IGCM_debug_PopStack "IGCM_sys_ncap2"
2118}
2119
2120function IGCM_sys_ncatted {
2121  IGCM_debug_PushStack "IGCM_sys_ncatted" -- $@
2122  if ( $DEBUG_sys ) ; then
2123    echo "IGCM_sys_ncatted :" $@
2124  fi
2125
2126  typeset NB_ESSAI DELAI status i
2127  # number of tentative
2128  NB_ESSAI=3
2129  # time delay between tentative
2130  DELAI=2
2131
2132  i=0
2133  while [ $i -lt $NB_ESSAI ] ; do
2134    ncatted "$@" > out_rsync 2>&1
2135    status=$?
2136    if [ ${status} -gt 0 ] ; then
2137      IGCM_debug_Print 2 "IGCM_sys_ncatted : error code ${status}"
2138      cat out_rsync
2139      \rm out_rsync
2140      IGCM_debug_Print 2 "IGCM_sys_ncatted : ${i}/${NB_ESSAI} sleep ${DELAI} seconds and try again."
2141    else
2142      \rm out_rsync
2143      break
2144    fi
2145    (( i = i + 1 ))
2146  done
2147
2148  if [ ${status} -gt 0 ] ; then
2149      echo "IGCM_sys_ncatted : ncatted error"
2150      IGCM_debug_Exit "ncatted"
2151  fi
2152
2153  IGCM_debug_PopStack "IGCM_sys_ncatted"
2154}
2155
2156function IGCM_sys_ncbo {
2157  IGCM_debug_PushStack "IGCM_sys_ncbo" -- $@
2158  if ( $DEBUG_sys ) ; then
2159    echo "IGCM_sys_ncbo :" $@
2160  fi
2161
2162  typeset NB_ESSAI DELAI status i
2163  # number of tentative
2164  NB_ESSAI=3
2165  # time delay between tentative
2166  DELAI=2
2167
2168  i=0
2169  while [ $i -lt $NB_ESSAI ] ; do
2170    ncbo $@ > out_rsync 2>&1
2171    status=$?
2172    if [ ${status} -gt 0 ] ; then
2173      IGCM_debug_Print 2 "IGCM_sys_ncbo : error code ${status}"
2174      cat out_rsync
2175      \rm out_rsync
2176      IGCM_debug_Print 2 "IGCM_sys_ncbo : ${i}/${NB_ESSAI} sleep ${DELAI} seconds and try again."
2177    else
2178      \rm out_rsync
2179      break
2180    fi
2181    (( i = i + 1 ))
2182  done
2183
2184  if [ ${status} -gt 0 ] ; then
2185      echo "IGCM_sys_ncbo : ncbo error"
2186      IGCM_debug_Exit "ncbo"
2187  fi
2188
2189  IGCM_debug_PopStack "IGCM_sys_ncbo"
2190}
2191
2192function IGCM_sys_ncdiff {
2193  IGCM_debug_PushStack "IGCM_sys_ncdiff" -- $@
2194  if ( $DEBUG_sys ) ; then
2195    echo "IGCM_sys_ncdiff :" $@
2196  fi
2197
2198  typeset NB_ESSAI DELAI status i
2199  # number of tentative
2200  NB_ESSAI=3
2201  # time delay between tentative
2202  DELAI=2
2203
2204  i=0
2205  while [ $i -lt $NB_ESSAI ] ; do
2206    ncdiff $@ > out_rsync 2>&1
2207    status=$?
2208    if [ ${status} -gt 0 ] ; then
2209      IGCM_debug_Print 2 "IGCM_sys_ncdiff : error code ${status}"
2210      cat out_rsync
2211      \rm out_rsync
2212      IGCM_debug_Print 2 "IGCM_sys_ncdiff : ${i}/${NB_ESSAI} sleep ${DELAI} seconds and try again."
2213    else
2214      \rm out_rsync
2215      break
2216    fi
2217    (( i = i + 1 ))
2218  done
2219
2220  if [ ${status} -gt 0 ] ; then
2221      echo "IGCM_sys_ncdiff : ncdiff error"
2222      IGCM_debug_Exit "ncdiff"
2223  fi
2224
2225  IGCM_debug_PopStack "IGCM_sys_ncdiff"
2226}
2227
2228function IGCM_sys_ncea {
2229  IGCM_debug_PushStack "IGCM_sys_ncea" -- $@
2230  if ( $DEBUG_sys ) ; then
2231    echo "IGCM_sys_ncea :" $@
2232  fi
2233
2234  typeset NB_ESSAI DELAI status i
2235  # number of tentative
2236  NB_ESSAI=3
2237  # time delay between tentative
2238  DELAI=2
2239
2240  i=0
2241  while [ $i -lt $NB_ESSAI ] ; do
2242    ncea $@ > out_rsync 2>&1
2243    status=$?
2244    if [ ${status} -gt 0 ] ; then
2245      IGCM_debug_Print 2 "IGCM_sys_ncea : error code ${status}"
2246      cat out_rsync
2247      \rm out_rsync
2248      IGCM_debug_Print 2 "IGCM_sys_ncea : ${i}/${NB_ESSAI} sleep ${DELAI} seconds and try again."
2249    else
2250      \rm out_rsync
2251      break
2252    fi
2253    (( i = i + 1 ))
2254  done
2255
2256  if [ ${status} -gt 0 ] ; then
2257      echo "IGCM_sys_ncea : ncea error"
2258      IGCM_debug_Exit "ncea"
2259  fi
2260
2261  IGCM_debug_PopStack "IGCM_sys_ncea"
2262}
2263
2264function IGCM_sys_ncecat {
2265  IGCM_debug_PushStack "IGCM_sys_ncecat" -- $@
2266  if ( $DEBUG_sys ) ; then
2267    echo "IGCM_sys_ncecat :" $@
2268  fi
2269
2270  typeset NB_ESSAI DELAI status i
2271  # number of tentative
2272  NB_ESSAI=3
2273  # time delay between tentative
2274  DELAI=2
2275
2276  i=0
2277  while [ $i -lt $NB_ESSAI ] ; do
2278    ncecat $@ > out_rsync 2>&1
2279    status=$?
2280    if [ ${status} -gt 0 ] ; then
2281      IGCM_debug_Print 2 "IGCM_sys_ncecat : error code ${status}"
2282      cat out_rsync
2283      \rm out_rsync
2284      IGCM_debug_Print 2 "IGCM_sys_ncecat : ${i}/${NB_ESSAI} sleep ${DELAI} seconds and try again."
2285    else
2286      \rm out_rsync
2287      break
2288    fi
2289    (( i = i + 1 ))
2290  done
2291
2292  if [ ${status} -gt 0 ] ; then
2293      echo "IGCM_sys_ncecat : ncecat error"
2294      IGCM_debug_Exit "ncecat"
2295  fi
2296
2297  IGCM_debug_PopStack "IGCM_sys_ncecat"
2298}
2299
2300function IGCM_sys_ncflint {
2301  IGCM_debug_PushStack "IGCM_sys_ncflint" -- $@
2302  if ( $DEBUG_sys ) ; then
2303    echo "IGCM_sys_ncflint :" $@
2304  fi
2305
2306  typeset NB_ESSAI DELAI status i
2307  # number of tentative
2308  NB_ESSAI=3
2309  # time delay between tentative
2310  DELAI=2
2311
2312  i=0
2313  while [ $i -lt $NB_ESSAI ] ; do
2314    ncflint $@ > out_rsync 2>&1
2315    status=$?
2316    if [ ${status} -gt 0 ] ; then
2317      IGCM_debug_Print 2 "IGCM_sys_ncflint : error code ${status}"
2318      cat out_rsync
2319      \rm out_rsync
2320      IGCM_debug_Print 2 "IGCM_sys_ncflint : ${i}/${NB_ESSAI} sleep ${DELAI} seconds and try again."
2321    else
2322      \rm out_rsync
2323      break
2324    fi
2325    (( i = i + 1 ))
2326  done
2327
2328  if [ ${status} -gt 0 ] ; then
2329      echo "IGCM_sys_ncflint : ncflint error"
2330      IGCM_debug_Exit "ncflint"
2331  fi
2332
2333  IGCM_debug_PopStack "IGCM_sys_ncflint"
2334}
2335
2336function IGCM_sys_ncks {
2337  IGCM_debug_PushStack "IGCM_sys_ncks" -- $@
2338  if ( $DEBUG_sys ) ; then
2339    echo "IGCM_sys_ncks :" $@
2340  fi
2341
2342  typeset NB_ESSAI DELAI status i
2343  # number of tentative
2344  NB_ESSAI=3
2345  # time delay between tentative
2346  DELAI=2
2347
2348  i=0
2349  while [ $i -lt $NB_ESSAI ] ; do
2350    ncks $@ > out_rsync 2>&1
2351    status=$?
2352    if [ ${status} -gt 0 ] ; then
2353      IGCM_debug_Print 2 "IGCM_sys_ncks : error code ${status}"
2354      cat out_rsync
2355      \rm out_rsync
2356      IGCM_debug_Print 2 "IGCM_sys_ncks : ${i}/${NB_ESSAI} sleep ${DELAI} seconds and try again."
2357    else
2358      \rm out_rsync
2359      break
2360    fi
2361    (( i = i + 1 ))
2362  done
2363
2364  if [ ${status} -gt 0 ] ; then
2365      echo "IGCM_sys_ncks : ncks error"
2366      IGCM_debug_Exit "ncks"
2367  fi
2368
2369  IGCM_debug_PopStack "IGCM_sys_ncks"
2370}
2371
2372function IGCM_sys_ncpdq {
2373  IGCM_debug_PushStack "IGCM_sys_ncpdq" -- $@
2374  if ( $DEBUG_sys ) ; then
2375    echo "IGCM_sys_ncpdq :" $@
2376  fi
2377
2378  typeset NB_ESSAI DELAI status i
2379  # number of tentative
2380  NB_ESSAI=3
2381  # time delay between tentative
2382  DELAI=2
2383
2384  i=0
2385  while [ $i -lt $NB_ESSAI ] ; do
2386    ncpdq $@ > out_rsync 2>&1
2387    status=$?
2388    if [ ${status} -gt 0 ] ; then
2389      IGCM_debug_Print 2 "IGCM_sys_ncpdq : error code ${status}"
2390      cat out_rsync
2391      \rm out_rsync
2392      IGCM_debug_Print 2 "IGCM_sys_ncpdq : ${i}/${NB_ESSAI} sleep ${DELAI} seconds and try again."
2393    else
2394      \rm out_rsync
2395      break
2396    fi
2397    (( i = i + 1 ))
2398  done
2399
2400  if [ ${status} -gt 0 ] ; then
2401      echo "IGCM_sys_ncpdq : ncpdq error"
2402      IGCM_debug_Exit "ncpdq"
2403  fi
2404
2405  IGCM_debug_PopStack "IGCM_sys_ncpdq"
2406}
2407
2408function IGCM_sys_ncra {
2409  IGCM_debug_PushStack "IGCM_sys_ncra" -- $@
2410  if ( $DEBUG_sys ) ; then
2411    echo "IGCM_sys_ncra :" $@
2412  fi
2413
2414  typeset NB_ESSAI DELAI status i
2415  # number of tentative
2416  NB_ESSAI=3
2417  # time delay between tentative
2418  DELAI=2
2419
2420  i=0
2421  while [ $i -lt $NB_ESSAI ] ; do
2422    ncra $@ > out_rsync 2>&1
2423    status=$?
2424    if [ ${status} -gt 0 ] ; then
2425      IGCM_debug_Print 2 "IGCM_sys_ncra : error code ${status}"
2426      cat out_rsync
2427      \rm out_rsync
2428      IGCM_debug_Print 2 "IGCM_sys_ncra : ${i}/${NB_ESSAI} sleep ${DELAI} seconds and try again."
2429    else
2430      \rm out_rsync
2431      break
2432    fi
2433    (( i = i + 1 ))
2434  done
2435
2436  if [ ${status} -gt 0 ] ; then
2437      echo "IGCM_sys_ncra : ncra error"
2438      IGCM_debug_Exit "ncra"
2439  fi
2440
2441  IGCM_debug_PopStack "IGCM_sys_ncra"
2442}
2443
2444function IGCM_sys_ncrcat {
2445  IGCM_debug_PushStack "IGCM_sys_ncrcat" -- $@
2446  if ( $DEBUG_sys ) ; then
2447    echo "IGCM_sys_ncrcat :" $@
2448  fi
2449
2450  typeset NB_ESSAI DELAI status i
2451  # number of tentative
2452  NB_ESSAI=3
2453  # time delay between tentative
2454  DELAI=2
2455
2456  i=0
2457  while [ $i -lt $NB_ESSAI ] ; do
2458    ncrcat $@ > out_rsync 2>&1
2459    status=$?
2460    if [ ${status} -gt 0 ] ; then
2461      IGCM_debug_Print 2 "IGCM_sys_ncrcat : error code ${status}"
2462      cat out_rsync
2463      \rm out_rsync
2464      IGCM_debug_Print 2 "IGCM_sys_ncrcat : ${i}/${NB_ESSAI} sleep ${DELAI} seconds and try again."
2465    elif [ ! "X$( grep "WARNING Intra-file non-monotonicity" out_rsync )" = "X" ] ; then
2466      IGCM_debug_Print 2 "IGCM_sys_ncrcat : WARNING Intra-file non-monotonicity"
2467      cat out_rsync
2468      # Hacky output parsing...
2469      toDelete=$( awk -F "output file " {'print $2'} out_rsync | awk -F " record" {'print $1'} )
2470      IGCM_debug_Print 2 "IGCM_sys_ncrcat : Delete ${toDelete}"
2471      \rm ${toDelete}
2472      \rm out_rsync
2473      IGCM_debug_Print 2 "IGCM_sys_ncrcat : ${i}/${NB_ESSAI} sleep ${DELAI} seconds and try again."
2474    else
2475      \rm out_rsync
2476      break
2477    fi
2478    (( i = i + 1 ))
2479  done
2480
2481  if [ ${status} -gt 0 ] ; then
2482      echo "IGCM_sys_ncrcat : ncrcat error"
2483      #IGCM_debug_Exit "ncrcat"
2484  fi
2485
2486  IGCM_debug_PopStack "IGCM_sys_ncrcat"
2487}
2488
2489function IGCM_sys_ncrename {
2490  IGCM_debug_PushStack "IGCM_sys_ncrename" -- $@
2491  if ( $DEBUG_sys ) ; then
2492    echo "IGCM_sys_ncrename :" $@
2493  fi
2494
2495  typeset NB_ESSAI DELAI status i
2496  # number of tentative
2497  NB_ESSAI=3
2498  # time delay between tentative
2499  DELAI=2
2500
2501  i=0
2502  while [ $i -lt $NB_ESSAI ] ; do
2503    ncrename $@ > out_rsync 2>&1
2504    status=$?
2505    if [ ${status} -gt 0 ] ; then
2506      IGCM_debug_Print 2 "IGCM_sys_ncrename : error code ${status}"
2507      cat out_rsync
2508      \rm out_rsync
2509      IGCM_debug_Print 2 "IGCM_sys_ncrename : ${i}/${NB_ESSAI} sleep ${DELAI} seconds and try again."
2510    else
2511      \rm out_rsync
2512      break
2513    fi
2514    (( i = i + 1 ))
2515  done
2516
2517  if [ ${status} -gt 0 ] ; then
2518      echo "IGCM_sys_ncrename : ncrename error"
2519      IGCM_debug_Exit "ncrename"
2520  fi
2521
2522  IGCM_debug_PopStack "IGCM_sys_ncrename"
2523}
2524
2525function IGCM_sys_ncwa {
2526  IGCM_debug_PushStack "IGCM_sys_ncwa" -- $@
2527  if ( $DEBUG_sys ) ; then
2528    echo "IGCM_sys_ncwa :" $@
2529  fi
2530
2531  typeset NB_ESSAI DELAI status i
2532  # number of tentative
2533  NB_ESSAI=3
2534  # time delay between tentative
2535  DELAI=2
2536
2537  i=0
2538  while [ $i -lt $NB_ESSAI ] ; do
2539    ncwa $@ > out_rsync 2>&1
2540    status=$?
2541    if [ ${status} -gt 0 ] ; then
2542      IGCM_debug_Print 2 "IGCM_sys_ncwa : error code ${status}"
2543      cat out_rsync
2544      \rm out_rsync
2545      IGCM_debug_Print 2 "IGCM_sys_ncwa : ${i}/${NB_ESSAI} sleep ${DELAI} seconds and try again."
2546    else
2547      \rm out_rsync
2548      break
2549    fi
2550    (( i = i + 1 ))
2551  done
2552
2553  if [ ${status} -gt 0 ] ; then
2554      echo "IGCM_sys_ncwa : ncwa error"
2555      IGCM_debug_Exit "ncwa"
2556  fi
2557
2558  IGCM_debug_PopStack "IGCM_sys_ncwa"
2559}
2560
2561##############################################################
2562# CDO OPERATOR
2563
2564function IGCM_sys_cdo {
2565  IGCM_debug_PushStack "IGCM_sys_cdo" -- $@
2566  if ( $DEBUG_sys ) ; then
2567    echo "IGCM_sys_cdo :" $@
2568  fi
2569
2570  typeset status
2571
2572  \cdo $@ > out_rsync 2>&1
2573  status=$?
2574  if [ ${status} -gt 0 ] ; then
2575    echo "IGCM_sys_cdo : error code ${status}"
2576    cat out_rsync
2577    \rm out_rsync
2578    IGCM_debug_PopStack "IGCM_sys_cdo"
2579    return 1
2580  else
2581    IGCM_debug_PopStack "IGCM_sys_cdo"
2582    return 0
2583  fi
2584
2585  IGCM_debug_PopStack "IGCM_sys_cdo"
2586}
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