source: trunk/libIGCM/libIGCM_sys/libIGCM_sys_curie.ksh @ 740

Last change on this file since 740 was 739, checked in by sdipsl, 12 years ago
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1#!/bin/ksh
2
3#**************************************************************
4# Author: Sebastien Denvil, Martial Mancip, Arnaud Caubel
5# Contact: Arnaud.Caubel__at__lsce.ipsl.fr
6# $Revision::                                          $ Revision of last commit
7# $Author::                                            $ Author of last commit
8# $Date::                                              $ Date of last commit
9# IPSL (2006)
10#  This software is governed by the CeCILL licence see libIGCM/libIGCM_CeCILL.LIC
11#
12#**************************************************************
13
14#=========================================================
15# The documentation of this file can be automatically generated
16# if you use the prefix #D- for comments to be extracted.
17# Extract with command: cat lib* | grep "^#D-" | cut -c "4-"
18#=========================================================
19
20#D-#==================================================
21#D-LibIGCM_sys for Curie
22#D-#==================================================
23#D-
24#D- This ksh library if a layer under some usefull
25#D-environment variables and shell commands.
26#D-All those definitions depend on host particularities.
27#D-It manages a stack mechanism and test validity of operations.
28#D-All function described bellow must be prefixed by IGCM_sys.
29
30#====================================================
31# libIGCM_sys PARAMETERS
32#====================================================
33
34#====================================================
35# set DEBUG_sys to true to output calls of function
36typeset -r DEBUG_sys=${DEBUG_sys:=true}
37
38#====================================================
39# Turn in dry run mode ? (sys_Put_Rest, sys_Put_Out, sys_Get)
40typeset -r DRYRUN=${DRYRUN:=0}
41
42# YOU MUST COMPILE YOUR EXE FILES FOR DRYRUN MODE !
43# -------------------------------------------------------------------------------------
44# | DRYRUN=  |  Date computations, | sys_Get    |  Exe    | sys_Put_Out; sys_Put_Rest |
45# |          |  Cp/Exe param files |            |  Chmod  |                           |
46# |          |      Qsub           |            |         |                           |
47# -------------------------------------------------------------------------------------
48# |    0     |       yes           |    yes     |  yes    |      yes                  |
49# -------------------------------------------------------------------------------------
50# |    1     |       yes           |    yes     |  yes    |      no                   |
51# -------------------------------------------------------------------------------------
52# |    2     |       yes           |    yes     |  no     |      no                   |
53# -------------------------------------------------------------------------------------
54# |    3     |       yes           |    no      |  no     |      no                   |
55# -------------------------------------------------------------------------------------
56
57#=====================================================
58# Global Variables :
59#=====================================================
60# Language : "fr" or "en"
61typeset -r MYLANG="fr"
62
63#=====================================================
64# Host and user names
65# $hostname ou hostname
66typeset  HOST=${HOST:=$( hostname )}
67# $username ou whoami
68typeset  LOGIN=${LOGIN:=$( whoami )}
69# $hostname of the MASTER job
70typeset MASTER=curie
71
72#D-
73#D-#==================================================
74#D-Program used in libIGCM
75#D-#==================================================
76
77# rsync with path
78typeset -r RSYNC=/usr/bin/rsync
79# RSYNC_opt args to rsync
80typeset -r RSYNC_opt="-va"
81# ie storage filesystem
82typeset -r STOREHOST=${MASTER}
83
84#====================================================
85# Source default environment
86#====================================================
87##. /etc/profile
88
89#====================================================
90# Set environment tools (ferret, nco, cdo)
91#====================================================
92if [ X${TaskType} = Xcomputing ] ; then
93  . /ccc/cont003/home/dsm/p86ipsl/.atlas_env_calcul_curie_ksh
94  export PATH=${PATH}:/ccc/cont003/home/dsm/p86ipsl/AddNoise/src_X64/bin
95else
96  . /ccc/cont003/home/dsm/p86ipsl/.atlas_env_post_curie_ksh
97fi
98
99#====================================================
100# Specific for ocean additionnal diagnostic
101export FER_GO="$FER_GO /home/cont003/p86denv/IGCM_POST_UTIL/JNL /home/cont003/p86denv/GRAF /home/cont003/p86denv/GRAF/GO"
102export FER_PALETTE="$FER_PALETTE /home/cont003/p86denv/GRAF/PALET"
103
104#====================================================
105# Host specific DIRECTORIES
106#====================================================
107
108# ============ CESIUM START ============ #
109
110#====================================================
111#- Mirror libIGCM from titane to cesium if needed
112#ROOTSYS=$( echo ${libIGCM} | gawk -F"/" '{print $3}' )
113#if [ ! ${ROOTSYS} = "home" ] ; then
114#  typeset -r MirrorlibIGCM=${MirrorlibIGCM:=true}
115#else
116#  typeset -r MirrorlibIGCM=${MirrorlibIGCM:=false}
117#fi
118
119#====================================================
120#- libIGCM_POST
121#if ( ${MirrorlibIGCM} ) ; then
122#  PATHlibIGCM=$( echo ${libIGCM} | gawk -F"${LOGIN}/" '{print $2}' | sed -e "s&/libIGCM&&" )
123#  typeset -r libIGCM_POST=${HOME}/MIRROR/${PATHlibIGCM}/libIGCM
124#else
125#  typeset -r libIGCM_POST=${libIGCM}
126#fi
127
128# ============ CESIUM  END  ============ #
129
130#====================================================
131#- MirrorlibIGCM for frontend
132typeset -r MirrorlibIGCM=${MirrorlibIGCM:=false}
133
134#====================================================
135#- libIGCM_POST for frontend
136typeset -r libIGCM_POST=${libIGCM}
137
138#====================================================
139#- R_EXE   (==> BIN_DIR = ${MODIPSL}/bin )
140typeset -r R_EXE="${MODIPSL}/bin"
141
142#====================================================
143#- SUBMIT_DIR : submission dir
144typeset SUBMIT_DIR=${SUBMIT_DIR:=${BRIDGE_MSUB_PWD}}
145
146#====================================================
147#- IN
148typeset -r R_IN=${R_IN:=/ccc/work/cont003/dsm/p86ipsl/IGCM}
149typeset -r R_IN_ECMWF=${R_IN_ECMWF:=/ccc/work/cont003/dsm/p24data}
150
151#====================================================
152#- ARCHIVE (dedicated to large files)
153typeset ARCHIVE=${CCCSTOREDIR}
154
155#====================================================
156#- STORAGE (dedicated to small/medium files)
157typeset STORAGE=${CCCWORKDIR}
158
159#====================================================
160#- R_OUT
161typeset R_OUT=${ARCHIVE}/IGCM_OUT
162
163#====================================================
164#- R_FIG (hosting figures : monitoring and atlas, and/or small files)
165typeset R_FIG=${STORAGE}/IGCM_OUT
166
167#====================================================
168#- R_BUF (ONLY FOR double copy an scratch)
169typeset -r R_BUF=${SCRATCHDIR}/IGCM_OUT
170
171#====================================================
172#- BIG_DIR : BIG_DIR to store files waiting for rebuild
173typeset -r BIG_DIR=${BIG_DIR:=${SCRATCHDIR}/REBUILD}
174
175#====================================================
176#- OUT_POST
177typeset -r R_OUT_POST=${SCRATCHDIR}/IGCM_OUT
178
179#====================================================
180#- RUN_DIR_PATH : Temporary working directory (=> TMP)
181if [ X${TaskType} = Xcomputing ] ; then
182  typeset -r RUN_DIR_PATH=${RUN_DIR_PATH:=${SCRATCHDIR}/RUN_DIR/${BRIDGE_MSUB_JOBID}}
183else
184  typeset -r RUN_DIR_PATH=${RUN_DIR_PATH:=${SCRATCHDIR}/TMPDIR_IGCM/${BRIDGE_MSUB_JOBID}}
185fi
186
187#====================================================
188#- HOST_MPIRUN_COMMAND
189typeset -r HOST_MPIRUN_COMMAND=${HOST_MPIRUN_COMMAND:="/usr/bin/time ccc_mprun"}
190
191#====================================================
192#- Max number of arguments passed to nco operator or demigration command
193UNIX_MAX_LIMIT=360
194
195#====================================================
196#- set PackDefault true on curie
197PackDefault=true
198
199#====================================================
200#- Number of core per node (max number of OpenMP task)
201NUM_COREPERNODE=8
202
203#====================================================
204#- Default number of MPI task for IPSL coupled model
205#- required for backward compatibility
206#-
207DEFAULT_NUM_PROC_OCE=5
208DEFAULT_NUM_PROC_CPL=1
209(( DEFAULT_NUM_PROC_ATM = BATCH_NUM_PROC_TOT - DEFAULT_NUM_PROC_OCE - DEFAULT_NUM_PROC_CPL ))
210DEFAULT_NUM_PROC_TOTAL=${BATCH_NUM_PROC_TOT}
211
212#D-#==================================================
213#D-function IGCM_sys_ChangeArchive
214#D-* Purpose: if SpaceName=TEST everything is stored on SCRATCHDIR
215#D-* Examples:
216#D-
217function IGCM_sys_ChangeArchive {
218  IGCM_debug_PushStack "IGCM_sys_ChangeArchive"
219
220  ARCHIVE=${SCRATCHDIR}
221  STORAGE=${SCRATCHDIR}
222  R_OUT=${ARCHIVE}/IGCM_OUT
223  R_FIG=${STORAGE}/IGCM_OUT
224
225  IGCM_debug_Print 1 "ARCHIVE has been redefined = ${ARCHIVE}"
226  IGCM_debug_Print 1 "STORAGE has been redefined = ${STORAGE}"
227  IGCM_debug_Print 1 "R_OUT   has been redefined = ${R_OUT}"
228  IGCM_debug_Print 1 "R_FIG   has been redefined = ${R_FIG}"
229
230  IGCM_debug_PopStack "IGCM_sys_ChangeArchive"
231}
232
233#D-#==================================================
234#D-function IGCM_sys_RshMaster
235#D-* Purpose: Connection to frontend machine.
236#D-* Examples:
237#D-
238function IGCM_sys_RshMaster {
239  IGCM_debug_PushStack "IGCM_sys_RshMaster" $@
240  /bin/ksh <<-EOF
241    export libIGCM=${libIGCM}
242    export DEBUG_debug=${DEBUG_debug}
243    . ${libIGCM}/libIGCM_debug/libIGCM_debug.ksh
244    . ${libIGCM}/libIGCM_card/libIGCM_card.ksh
245    ${@}
246EOF
247  if [ $? -gt 0 ] ; then
248    echo "IGCM_sys_RshMaster : erreur."
249    IGCM_debug_Exit "IGCM_sys_RshMaster"
250  fi
251  IGCM_debug_PopStack "IGCM_sys_RshMaster"
252}
253
254#D-#==================================================
255#D-function IGCM_sys_RshArchive
256#D-* Purpose: Archive rsh command
257#D-* Examples:
258#D-
259function IGCM_sys_RshArchive {
260  IGCM_debug_PushStack "IGCM_sys_RshArchive" $@
261  /bin/ksh <<-EOF
262    ${@}
263EOF
264  if [ $? -gt 0 ] ; then
265    echo "IGCM_sys_RshArchive : erreur."
266    IGCM_debug_Exit "IGCM_sys_RshArchive"
267  fi
268  IGCM_debug_PopStack "IGCM_sys_RshArchive"
269}
270
271#D-#==================================================
272#D-function IGCM_sys_RshPost
273#D-* Purpose: Post-process rsh command
274#D-* Examples:
275#D-
276function IGCM_sys_RshPost {
277  IGCM_debug_PushStack "IGCM_sys_RshPost" $@
278  if ( $DEBUG_sys ) ; then
279    echo "IGCM_sys_RshPost :" $@
280  fi
281
282  #echo cat tmp_IGCM_sys_RshPost_$$ INITIAL
283  #cat tmp_IGCM_sys_RshPost_$$
284  # keep standard input (stdin) for the loop onto temporary file
285  cat >tmp_IGCM_sys_RshPost_$$
286
287# ============ FRONTEND START ============ #
288
289  /bin/ksh <tmp_IGCM_sys_RshPost_$$
290  if [ $? -gt 0 ] ; then
291    echo "IGCM_sys_RshPost : erreur."
292    IGCM_debug_Exit "IGCM_sys_RshPost"
293  fi
294  # delete temporary file
295  \rm tmp_IGCM_sys_RshPost_$$
296
297# ============ FRONTEND  END  ============ #
298
299# ============ CESIUM START ============ #
300#  typeset NB_ESSAI DELAI status i
301#  if [ "X$( grep rebuild_from tmp_IGCM_sys_RshPost_$$ )" != "X" ] ; then
302#    #little hack so that rebuild submission is done on titane not an cesium
303#
304#    libIGCM_POST_sed=$( echo $libIGCM_POST | sed 's/\//\\\//g' )
305#    POST_DIR_sed=$( echo ${POST_DIR} | sed 's/\//\\\//g' )
306#    sed "s/IGCM_sys_QsubPost/IGCM_sys_Qsub/g" tmp_IGCM_sys_RshPost_$$ > tmp.txt
307#    sed "s/ rebuild_fromWorkdir/ ${libIGCM_POST_sed}\/rebuild_fromWorkdir.job/g" tmp.txt > tmp_IGCM_sys_RshPost_$$
308#    sed "s/ rebuild_fromArchive/ ${libIGCM_POST_sed}\/rebuild_fromArchive.job/g" tmp_IGCM_sys_RshPost_$$ > tmp.txt
309#    sed "s/Script_Post_Output=/Script_Output=${POST_DIR_sed}\//g" tmp.txt > tmp_IGCM_sys_RshPost_$$
310#    \mv tmp.txt tmp_IGCM_sys_RshPost_$$
311#
312#    echo cat tmp_IGCM_sys_RshPost_$$ AFTER
313#    cat tmp_IGCM_sys_RshPost_$$
314#
315#    /bin/ksh <tmp_IGCM_sys_RshPost_$$
316#    if [ $? -gt 0 ] ; then
317#      echo "IGCM_sys_RshPost : erreur."
318#      IGCM_debug_Exit "IGCM_sys_RshPost"
319#    fi
320#    # delete temporary file
321#    \rm tmp_IGCM_sys_RshPost_$$
322#
323#  else
324#    # number of tentative
325#    NB_ESSAI=10
326#    # time delay between tentative
327#    DELAI=10
328#    i=0
329#    while [ $i -ne $NB_ESSAI ] ; do
330#      ssh -t titane996 ssh cesium /bin/ksh <tmp_IGCM_sys_RshPost_$$
331#      status=$?
332#      if [ ${status} -ne 0 ];
333#      then
334#       sleep $DELAI
335#      else
336#       break
337#      fi
338#      let i=$i+1
339#    done
340#    # delete temporary file
341#    \rm tmp_IGCM_sys_RshPost_$$
342#
343#    if [ ${status} -gt 0 ] ; then
344#      echo "IGCM_sys_RshPost : erreur."
345#      IGCM_debug_Exit "IGCM_sys_RshPost"
346#    fi
347#  fi
348
349# ============ CESIUM  END  ============ #
350
351  IGCM_debug_PopStack "IGCM_sys_RshPost"
352}
353
354#D-#==================================================
355#D-function IGCM_sys_SendMail
356#D-* Purpose: Send mail when simulation is over
357#D-* Examples:
358#D-
359function IGCM_sys_SendMail {
360  IGCM_debug_PushStack "IGCM_sys_SendMail" $@
361  if ( $DEBUG_sys ) ; then
362    echo "IGCM_sys_SendMail :" $@
363  fi
364
365  if ( ${ExitFlag} ) ; then
366    status=failed
367  else
368    status=completed
369  fi
370
371  cat  << END_MAIL > job_end.mail
372Dear ${LOGIN},
373
374  Simulation ${config_UserChoices_JobName} is ${status} on supercomputer `hostname`.
375  Job started : ${DateBegin}
376  Job ended   : ${DateEnd}
377  Output files are available in ${R_SAVE}
378  Files to be rebuild are temporarily available in ${REBUILD_DIR}
379  Pre-packed files are temporarily available in ${R_BUFR}
380  Script files, Script Outputs and Debug files (if necessary) are available in ${SUBMIT_DIR}
381END_MAIL
382
383    if [ ! -z ${config_UserChoices_MailName} ] ; then
384        mail -s "${config_UserChoices_JobName} ${status}" ${config_UserChoices_MailName} < job_end.mail
385    elif [ -f ~/.forward ] ; then
386        mail -s "${config_UserChoices_JobName} ${status}" $( cat ~/.forward ) < job_end.mail
387    fi
388    sleep 10
389    rm -f job_end.mail
390
391  if [ $? -gt 0 ] ; then
392    echo "IGCM_sys_SendMail : erreur."
393    IGCM_debug_Exit "IGCM_sys_SendMail"
394  fi
395  IGCM_debug_PopStack "IGCM_sys_SendMail"
396}
397
398#D-#==================================================
399#D-function IGCM_sys_Mkdir
400#D-* Purpose: Master locale mkdir command
401#D-* Examples:
402#D-
403function IGCM_sys_Mkdir {
404  IGCM_debug_PushStack "IGCM_sys_Mkdir" $@
405  if ( $DEBUG_sys ) ; then
406    echo "IGCM_sys_Mkdir :" $@
407  fi
408  if [ ! -d ${1} ]; then
409    \mkdir -p $1
410    if [ $? -gt 0 ] ; then
411      echo "IGCM_sys_Mkdir : erreur."
412      IGCM_debug_Exit "IGCM_sys_Mkdir"
413    fi
414  fi
415  # vérification :
416  if [ ! -d ${1} ] ; then
417    echo "IGCM_sys_Mkdir : erreur."
418    IGCM_debug_Exit "IGCM_sys_Mkdir"
419  fi
420  IGCM_debug_PopStack "IGCM_sys_Mkdir"
421}
422
423#D-#==================================================
424#D-function IGCM_sys_MkdirArchive
425#D-* Purpose: Mkdir on Archive
426#D-* Examples:
427#D-
428function IGCM_sys_MkdirArchive {
429  IGCM_debug_PushStack "IGCM_sys_MkdirArchive" $@
430  if ( $DEBUG_sys ) ; then
431    echo "IGCM_sys_MkdirArchive :" $@
432  fi
433  #- creation de repertoire sur le serveur fichier
434  if [ ! -d ${1} ]; then
435    \mkdir -p $1
436    if [ $? -gt 0 ] ; then
437      echo "IGCM_sys_MkdirArchive : erreur."
438      IGCM_debug_Exit "IGCM_sys_MkdirArchive"
439    fi
440  fi
441  IGCM_debug_PopStack "IGCM_sys_MkdirArchive"
442}
443
444#D-#==================================================
445#D-function IGCM_sys_MkdirWork
446#D-* Purpose: Mkdir on Work
447#D-* Examples:
448#D-
449function IGCM_sys_MkdirWork {
450  IGCM_debug_PushStack "IGCM_sys_MkdirWork" $@
451  if ( $DEBUG_sys ) ; then
452    echo "IGCM_sys_MkdirWork :" $@
453  fi
454  #- creation de repertoire sur le serveur fichier
455  if [ ! -d ${1} ]; then
456    \mkdir -p $1
457    if [ $? -gt 0 ] ; then
458      echo "IGCM_sys_MkdirWork : erreur."
459      IGCM_debug_Exit "IGCM_sys_MkdirWork"
460    fi
461  fi
462  IGCM_debug_PopStack "IGCM_sys_MkdirWork"
463}
464
465#D-#==================================================
466#D-function IGCM_sys_Cd
467#D-* Purpose: master cd command
468#D-* Examples:
469#D-
470function IGCM_sys_Cd {
471  IGCM_debug_PushStack "IGCM_sys_Cd" $@
472  if ( $DEBUG_sys ) ; then
473    echo "IGCM_sys_Cd :" $@
474  fi
475  \cd $1
476  if [ $? -gt 0 ] ; then
477    echo "IGCM_sys_Cd : erreur."
478    IGCM_debug_Exit "IGCM_sys_Cd"
479  fi
480  IGCM_debug_PopStack "IGCM_sys_Cd"
481}
482
483#D-#==================================================
484#D-function IGCM_sys_Chmod
485#D-* Purpose: Chmod
486#D-* Examples:
487#D-
488function IGCM_sys_Chmod {
489  IGCM_debug_PushStack "IGCM_sys_Chmod" -- $@
490  if ( $DEBUG_sys ) ; then
491    echo "IGCM_sys_Chmod :" $@
492  fi
493  if [ $DRYRUN -le 1 ]; then
494    \chmod $@
495    if [ $? -gt 0 ] ; then
496      echo "IGCM_sys_Chmod : erreur."
497      IGCM_debug_Exit "IGCM_sys_Chmod"
498    fi
499  else
500    ( ${DEBUG_debug} ) && echo "DRYRUN mode = " $DRYRUN >> stack
501  fi
502  IGCM_debug_PopStack "IGCM_sys_Chmod"
503}
504
505#D-#==================================================
506#D-function IGCM_sys_FileSize
507#D-* Purpose: Filesize
508#D-* Examples:
509#D-
510function IGCM_sys_FileSize {
511  IGCM_debug_PushStack "IGCM_sys_FileSize" $@
512
513  typeset sizeF
514  set +A sizeF -- $( ls -la ${1} )
515  if [ $? -gt 0 ] ; then
516    IGCM_debug_Exit "IGCM_sys_FileSize"
517  fi
518  eval ${2}=${sizeF[4]}
519
520  IGCM_debug_PopStack "IGCM_sys_FileSize"
521}
522
523#D-#==================================================
524#D-function IGCM_sys_TestDir
525#D-* Purpose: Test Directory that must exists
526#D-* Examples:
527#D-
528function IGCM_sys_TestDir {
529  IGCM_debug_PushStack "IGCM_sys_TestDir" $@
530  if ( $DEBUG_sys ) ; then
531    echo "IGCM_sys_TestDir :" $@
532  fi
533  typeset ExistFlag
534  ExistFlag=$( [ -d $1 ] && echo 0 || echo 1 )
535  IGCM_debug_PopStack "IGCM_sys_TestDir"
536
537  return ${ExistFlag}
538}
539
540#D-#==================================================
541#D-function IGCM_sys_TestDirArchive
542#D-* Purpose: Test Directory that must exists on Archive
543#D-* Examples:
544#D-
545function IGCM_sys_TestDirArchive {
546  IGCM_debug_PushStack "IGCM_sys_TestDirArchive" $@
547  if ( $DEBUG_sys ) ; then
548    echo "IGCM_sys_TestDirArchive :" $@
549  fi
550  typeset ExistFlag
551  ExistFlag=$( [ -d $1 ] && echo 0 || echo 1 )
552  IGCM_debug_PopStack "IGCM_sys_TestDirArchive"
553
554  return ${ExistFlag}
555}
556
557#D-#==================================================
558#D-function IGCM_sys_IsFileArchived
559#D-* Purpose: Test file that must NOT EXISTS on Archive
560#D-* Examples:
561#D-
562function IGCM_sys_IsFileArchived {
563  IGCM_debug_PushStack "IGCM_sys_IsFileArchived" $@
564  if ( $DEBUG_sys ) ; then
565    echo "IGCM_sys_IsFileArchived :" $@
566  fi
567  typeset IsArchivedFlag
568  IsArchivedFlag=$( [ X$( echo $1 | grep ^\/ccc\/store ) != X ] && echo 0 || echo 1 )
569  IGCM_debug_PopStack "IGCM_sys_IsFileArchived"
570
571  return ${IsArchivedFlag}
572}
573
574#D-#==================================================
575#D-function IGCM_sys_TestFileArchive
576#D-* Purpose: Test file that must NOT EXISTS on Archive
577#D-* Examples:
578#D-
579function IGCM_sys_TestFileArchive {
580  IGCM_debug_PushStack "IGCM_sys_TestFileArchive" $@
581  typeset ExistFlag
582  ExistFlag=$( [ -f $1 ] && echo 0 || echo 1 )
583  IGCM_debug_PopStack "IGCM_sys_TestFileArchive"
584
585  return ${ExistFlag}
586}
587
588#D-#==================================================
589#D-function IGCM_sys_TestFileBuffer
590#D-* Purpose: Test file that must NOT EXISTS on Buffer
591#D-* Examples:
592#D-
593function IGCM_sys_TestFileBuffer {
594  IGCM_debug_PushStack "IGCM_sys_TestFileBuffer" $@
595  typeset ExistFlag
596  ExistFlag=$( [ -f $1 ] && echo 0 || echo 1 )
597  IGCM_debug_PopStack "IGCM_sys_TestFileBuffer"
598
599  return ${ExistFlag}
600}
601
602#D-#==================================================
603#D-function IGCM_sys_CountFileArchive
604#D-* Purpose: Count files on Archive filesystem
605#D-* Examples:
606#D-
607function IGCM_sys_CountFileArchive {
608  IGCM_debug_PushStack "IGCM_sys_CountFileArchive" $@
609  ls ${@} 2>/dev/null | wc -l
610  if [ $? -gt 0 ] ; then
611    echo "IGCM_sys_CountFileArchive : erreur."
612  fi
613  IGCM_debug_PopStack "IGCM_sys_CountFileArchive"
614}
615
616#D-#==================================================
617#D-function IGCM_sys_CountFileBuffer
618#D-* Purpose: Count files on Scratch filesystem
619#D-* Examples:
620#D-
621function IGCM_sys_CountFileBuffer {
622  IGCM_debug_PushStack "IGCM_sys_CountFileBuffer" $@
623  ls ${@} 2>/dev/null | wc -l
624  if [ $? -gt 0 ] ; then
625    echo "IGCM_sys_CountFileBuffer : erreur."
626  fi
627  IGCM_debug_PopStack "IGCM_sys_CountFileBuffer"
628}
629
630#D-#==================================================
631#D-function IGCM_sys_Tree
632#D-* Purpose: Tree directories with files on ${ARCHIVE}
633#D-* Examples: IGCM_sys_Tree ${R_IN} ${R_OUT}
634#D-
635function IGCM_sys_Tree {
636  IGCM_debug_PushStack "IGCM_sys_Tree" $@
637  if ( $DEBUG_sys ) ; then
638    echo "IGCM_sys_Tree :" $@
639  fi
640
641  \ls -lR ${@}
642
643  IGCM_debug_PopStack "IGCM_sys_Tree"
644}
645
646#D-#==================================================
647#D-function IGCM_sys_Tar
648#D-* Purpose: master tar command
649#D-* Examples:
650#D-
651function IGCM_sys_Tar {
652  IGCM_debug_PushStack "IGCM_sys_Tar" $@
653  if ( $DEBUG_sys ) ; then
654    echo "IGCM_sys_Tar :" $@
655  fi
656  \tar cf $@
657  if [ $? -gt 0 ] ; then
658    echo "IGCM_sys_Tar : erreur."
659    IGCM_debug_Exit "IGCM_sys_Tar"
660  fi
661  IGCM_debug_PopStack "IGCM_sys_Tar"
662}
663
664#D-#==================================================
665#D-function IGCM_sys_UnTar
666#D-* Purpose: master un-tar command
667#D-* Examples:
668#D-
669function IGCM_sys_UnTar {
670  IGCM_debug_PushStack "IGCM_sys_UnTar" $@
671  if ( $DEBUG_sys ) ; then
672    echo "IGCM_sys_UnTar :" $@
673  fi
674  \tar xvf $1
675  if [ $? -gt 0 ] ; then
676    echo "IGCM_sys_UnTar : erreur."
677    IGCM_debug_Exit "IGCM_sys_UnTar"
678  fi
679  IGCM_debug_PopStack "IGCM_sys_UnTar"
680}
681
682#D-#==================================================
683#D-function IGCM_sys_Qsub
684#D-* Purpose: Qsub new job
685#D-* Examples:
686#D-
687function IGCM_sys_Qsub {
688  IGCM_debug_PushStack "IGCM_sys_Qsub" $@
689  if ( $DEBUG_sys ) ; then
690    echo "IGCM_sys_Qsub :" $@
691  fi
692  typeset options
693  if [ ${config_UserChoices_JobName}.${CumulPeriod} = "." ] ; then
694    options=" -o ${Script_Output} -e ${Script_Output}"
695  else
696    options=" -o ${Script_Output} -e ${Script_Output} -r ${config_UserChoices_JobName}.${CumulPeriod}"
697  fi
698
699  /usr/bin/ccc_msub ${options} < $1
700  if [ $? -gt 0 ] ; then
701    echo "IGCM_sys_Qsub : erreur ${options} $1"
702    IGCM_debug_Exit "IGCM_sys_Qsub"
703  fi
704  IGCM_debug_PopStack "IGCM_sys_Qsub"
705}
706
707#D-#==================================================
708#D-function IGCM_sys_QsubPost
709#D-* Purpose: Qsub new job on scalaire
710#D-* Examples:
711#D-
712function IGCM_sys_QsubPost {
713  IGCM_debug_PushStack "IGCM_sys_QsubPost" $@
714  if ( $DEBUG_sys ) ; then
715    echo "IGCM_sys_QsubPost :" $@
716  fi
717  /usr/bin/ccc_msub -Q normal -o ${POST_DIR}/${Script_Post_Output}.out -e ${POST_DIR}/${Script_Post_Output}.out ${libIGCM_POST}/$1.job
718  if [ $? -gt 0 ] ; then
719    echo "IGCM_sys_QsubPost : erreur " $@
720    IGCM_debug_Exit "IGCM_sys_QsubPost"
721  fi
722  IGCM_debug_PopStack "IGCM_sys_QsubPost"
723}
724
725#D-*************************
726#D- File transfer functions
727#D-*************************
728#D-
729
730#D-#==================================================
731#D-function IGCM_sys_Rsync_out
732#D-* Purpose: treat return val of rsync
733#D-* Examples: IGCM_sys_Rsync_out out_RET_rsync
734#D-  Error values and explanations can depend on your system version.
735function IGCM_sys_Rsync_out {
736  status=$1
737  if [ ! $status ] ; then
738    echo "rsync error !"
739  fi
740
741  if [ $MYLANG = "fr" ]; then
742    case $status in
743    0)  return ;;
744    1)  echo "Erreur de rsync ; RERR_SYNTAX : "
745      echo "Erreur de syntaxe ou d'utilisation."
746      return;;
747    2)  echo "Erreur de rsync ; RERR_PROTOCOL : "
748      echo "Incompatibilité de protocole."
749      return;;
750    3)  echo "Erreur de rsync ; RERR_FILESELECT 3"
751      echo "Erreurs  lors  de  la  sélection des fichiers d'entrée sortie et"
752      echo "répertoires"
753      return;;
754    4)  echo "Erreur de rsync ; RERR_UNSUPPORTED"
755      echo "Action demandée non supportée : une tentative de manipulation de"
756      echo "fichiers  64-bits  sur une plate-forme qui ne les supporte pas a"
757      echo "été faite ; ou une option qui est supportée par le  client  mais"
758      echo "pas par le serveur a été spécifiée."
759      return;;
760    10) echo "Erreur de rsync ; RERR_SOCKETIO"
761      echo "Erreur dans le socket d'entrée sortie"
762      return;;
763    11) echo "Erreur de rsync ; RERR_FILEIO"
764      echo "Erreur d'entrée sortie fichier"
765      return;;
766    12) echo "Erreur de rsync ; RERR_STREAMIO"
767      echo "Erreur dans flux de donnée du protocole rsync"
768      return;;
769    13) echo "Erreur de rsync ; RERR_MESSAGEIO"
770      echo "Erreur avec les diagnostics du programme"
771      return;;
772    14) echo "Erreur de rsync ; RERR_IPC"
773      echo "Erreur dans le code IPC"
774      return;;
775    20) echo "Erreur de rsync ; RERR_SIGNAL"
776      echo "SIGUSR1 ou SIGINT reçu"
777      return;;
778    21) echo "Erreur de rsync ; RERR_WAITCHILD"
779      echo "Une erreur retournée par waitpid()"
780      return;;
781    22) echo "Erreur de rsync ; RERR_MALLOC"
782      echo "Erreur lors de l'allocation des tampons de mémoire de coeur"
783      return;;
784    23) echo ""
785      echo "Erreur fichier inexistant"
786      return;;
787    30) echo "Erreur de rsync ; RERR_TIMEOUT"
788      echo "Temps d'attente écoulé dans l'envoi/réception de données"
789      return;;
790    *)  echo "Erreur de rsync : code de retour de rsync inconnu :" $status
791      return;;
792    esac
793  elif [ $MYLANG = "en" ] ; then
794    case $status in
795    0)  return;;
796    1)  echo "rsync error : Syntax or usage error "
797      return;;
798    2)  echo "rsync error : Protocol incompatibility "
799      return;;
800    3)  echo "rsync error : Errors selecting input/output files, dirs"
801      return;;
802    4)  echo "rsync error : Requested action not supported: an attempt"
803      echo "was made to manipulate 64-bit files on a platform that cannot support"
804      echo "them; or an option was specified that is supported by the client and"
805      echo "not by the server."
806      return;;
807    5)  echo "rsync error : Error starting client-server protocol"
808      return;;
809    10) echo "rsync error : Error in socket I/O "
810      return;;
811    11) echo "rsync error : Error in file I/O "
812      return;;
813    12) echo "rsync error : Error in rsync protocol data stream "
814      return;;
815    13) echo "rsync error : Errors with program diagnostics "
816      return;;
817    14) echo "rsync error : Error in IPC code "
818      return;;
819    20) echo "rsync error : Received SIGUSR1 or SIGINT "
820      return;;
821    21) echo "rsync error : Some error returned by waitpid() "
822      return;;
823    22) echo "rsync error : Error allocating core memory buffers "
824      return;;
825    23) echo "rsync error : Partial transfer due to error"
826      return;;
827    24) echo "rsync error : Partial transfer due to vanished source files"
828      return;;
829    30) echo "rsync error : Timeout in data send/receive "
830      return;;
831    *)  echo "rsync error : return code of rsync unknown :" $status
832      return;;
833    esac
834  else
835    echo "unknown language $MYLANG."
836    return
837  fi
838}
839
840#D-#==================================================
841#D-function IGCM_sys_Miror_libIGCM
842#D-* Purpose: Mirror libIGCM PATH and lib to cesium
843#D-* Examples:
844#D-
845function IGCM_sys_Mirror_libIGCM {
846  IGCM_debug_PushStack "IGCM_sys_Mirror_libIGCM"
847  if ( $DEBUG_sys ) ; then
848    echo "IGCM_sys_Mirror_libIGCM"
849  fi
850
851  typeset status DEST
852
853  mkdir -p ${HOME}/MIRROR/${PATHlibIGCM}
854
855  echo ${RSYNC} ${RSYNC_opt} ${libIGCM} ${HOME}/MIRROR/${PATHlibIGCM} > out_rsync 2>&1
856  ${RSYNC} ${RSYNC_opt} ${libIGCM} ${HOME}/MIRROR/${PATHlibIGCM} >> out_rsync 2>&1
857  status=$?
858
859  if [ ${status} -gt 0 ] ; then
860    echo "IGCM_sys_Mirror_libIGCM Warning : no libIGCM on cesium."
861    cat out_rsync
862  fi
863  IGCM_debug_PopStack "IGCM_sys_Mirror_libIGCM"
864}
865
866#D-#==================================================
867#D-function IGCM_sys_Cp
868#D-* Purpose: generic cp
869#D-* Examples:
870#D-
871function IGCM_sys_Cp {
872  IGCM_debug_PushStack "IGCM_sys_Cp" $@
873  if ( $DEBUG_sys ) ; then
874    echo "IGCM_sys_Cp :" $@
875  fi
876
877  typeset status
878
879  echo cp $@ > out_rsync 2>&1
880  \cp $@ >> out_rsync 2>&1
881  status=$?
882
883  if [ ${status} -gt 0 ] ; then
884    echo "IGCM_sys_Cp : error code ${status}"
885    cat out_rsync
886    IGCM_debug_Exit "IGCM_sys_Cp"
887  else
888    \rm out_rsync
889  fi
890  IGCM_debug_PopStack "IGCM_sys_Cp"
891}
892
893#D-#==================================================
894#D-function IGCM_sys_Rm
895#D-* Purpose: generic rm
896#D-* Examples:
897#D-
898function IGCM_sys_Rm {
899  IGCM_debug_PushStack "IGCM_sys_Rm" -- $@
900  if ( $DEBUG_sys ) ; then
901    echo "IGCM_sys_Rm :" $@
902  fi
903
904  typeset status
905
906  echo rm $@ > out_rsync 2>&1
907  \rm $@ >> out_rsync 2>&1
908  status=$?
909
910  if [ ${status} -gt 0 ] ; then
911    echo "IGCM_sys_Rm : error code ${status}"
912    cat out_rsync
913    IGCM_debug_Exit "IGCM_sys_Rm"
914  else
915    \rm out_rsync
916  fi
917  IGCM_debug_PopStack "IGCM_sys_Rm"
918}
919
920#D-#==================================================
921#D-function IGCM_sys_RmRunDir
922#D-* Purpose: rm tmpdir (dummy function most of the time batch
923#D-                      scheduler will do the job)
924#D-* Examples:
925#D-
926function IGCM_sys_RmRunDir {
927  IGCM_debug_PushStack "IGCM_sys_RmRunDir" -- $@
928  if ( $DEBUG_sys ) ; then
929    echo "IGCM_sys_RmRunDir :" $@
930  fi
931
932  typeset status
933
934  echo rm $@ > out_rsync 2>&1
935  \rm $@ >> out_rsync 2>&1
936  status=$?
937
938  if [ ${status} -gt 0 ] ; then
939    echo "IGCM_sys_RmRunDir : error code ${status}"
940    cat out_rsync
941    IGCM_debug_Exit "IGCM_sys_RmRunDir"
942  else
943    \rm out_rsync
944  fi
945  IGCM_debug_PopStack "IGCM_sys_RmRunDir"
946}
947
948#D-#==================================================
949#D-function IGCM_sys_Mv
950#D-* Purpose: generic move
951#D-* Examples:
952#D-
953function IGCM_sys_Mv {
954  IGCM_debug_PushStack "IGCM_sys_Mv" $@
955  if ( $DEBUG_sys ) ; then
956    echo "IGCM_sys_Mv :" $@
957  fi
958
959  if [ $DRYRUN = 0 ]; then
960
961    typeset status
962
963    echo mv $@ > out_rsync 2>&1
964    \mv $@ >> out_rsync 2>&1
965    status=$?
966
967    if [ ${status} -gt 0 ] ; then
968      echo "IGCM_sys_Mv : error code ${status}"
969      cat out_rsync
970      IGCM_debug_Exit "IGCM_sys_Mv"
971    else
972      \rm out_rsync
973    fi
974  else
975    ( ${DEBUG_debug} ) && echo "DRYRUN mode = " $DRYRUN >> stack
976  fi
977
978  IGCM_debug_PopStack "IGCM_sys_Mv"
979}
980
981#D-#==================================================
982#D-function IGCM_sys_Put_Dir
983#D-* Purpose: Copy a complete directory on $(ARCHIVE)
984#D-* Examples:
985#D-
986function IGCM_sys_Put_Dir {
987  IGCM_debug_PushStack "IGCM_sys_Put_Dir" $@
988  if ( $DEBUG_sys ) ; then
989    echo "IGCM_sys_Put_Dir :" $@
990  fi
991  if [ $DRYRUN = 0 ]; then
992    if [ ! -d ${1} ] ; then
993      echo "WARNING : IGCM_sys_Put_Dir ${1} DOES NOT EXIST ."
994      IGCM_debug_PopStack "IGCM_sys_Put_Dir"
995      return
996    fi
997
998    typeset status
999
1000    # Only if we use rsync
1001    #IGCM_sys_TestDirArchive $( dirname $2 )
1002    #
1003    #USUAL WAY
1004    \cp -r $1 $2 > out_rsync 2>&1
1005    status=$?
1006
1007    if [ ${status} -gt 0 ] ; then
1008      echo "IGCM_sys_Put_Dir : error code ${status}"
1009      cat out_rsync
1010      IGCM_debug_Exit "IGCM_sys_Put_Dir"
1011    else
1012      \rm out_rsync
1013    fi
1014  else
1015    ( ${DEBUG_debug} ) && echo "DRYRUN mode = " $DRYRUN >> stack
1016  fi
1017  IGCM_debug_PopStack "IGCM_sys_Put_Dir"
1018}
1019
1020#D-#==================================================
1021#D-function IGCM_sys_Get_Dir
1022#D-* Purpose: Copy a complete directory from ${ARCHIVE}
1023#D-* Examples:
1024#D-
1025function IGCM_sys_Get_Dir {
1026  IGCM_debug_PushStack "IGCM_sys_Get_Dir" $@
1027  if ( $DEBUG_sys ) ; then
1028    echo "IGCM_sys_Get_Dir :" $@
1029  fi
1030  if [ $DRYRUN = 0 ]; then
1031#    if [ ! -d ${1} ] ; then
1032#      echo "WARNING : IGCM_sys_Get_Dir ${1} DOES NOT EXIST ."
1033#      IGCM_debug_PopStack "IGCM_sys_Get_Dir"
1034#      return
1035#    fi
1036
1037    typeset NB_ESSAI DELAI status i
1038    # number of tentative
1039    NB_ESSAI=3
1040    # time delay between tentative
1041    DELAI=2
1042
1043    # Only if we use rsync
1044    #IGCM_sys_TestDirArchive $( dirname $2 )
1045    #
1046    # USUAL WAY
1047    # add 'ccc_hsm get' (to demigrate all offline files) to reduce time of this command :
1048    ccc_hsm get -r $1
1049
1050    i=0
1051    while [ $i -lt $NB_ESSAI ] ; do
1052      \cp -ur $1 $2 >> out_rsync 2>&1
1053      status=$?
1054      if [ ${status} -gt 0 ]; then
1055        IGCM_debug_Print 2 "IGCM_sys_Get_Dir : cp failed error code ${status} ${i}/${NB_ESSAI}"
1056        IGCM_debug_Print 2 "IGCM_sys_Get_Dir : sleep ${DELAI} seconds and try again."
1057        sleep $DELAI
1058      else
1059        break
1060      fi
1061      (( i = i + 1 ))
1062    done
1063
1064    if [ ${status} -gt 0 ] ; then
1065      echo "IGCM_sys_Get_Dir : error."
1066      cat out_rsync
1067      IGCM_debug_Exit "IGCM_sys_Get_Dir"
1068    else
1069      \rm out_rsync
1070    fi
1071  else
1072    ( ${DEBUG_debug} ) && echo "DRYRUN mode = " $DRYRUN >> stack
1073  fi
1074  IGCM_debug_PopStack "IGCM_sys_Get_Dir"
1075}
1076
1077#D-#==================================================
1078#D-function IGCM_sys_Get_Master
1079#D-* Purpose: Copy a complete directory from MASTER filesystem
1080#D-* Examples:
1081#D-
1082function IGCM_sys_Get_Master {
1083  IGCM_debug_PushStack "IGCM_sys_Get_Master" $@
1084  if ( $DEBUG_sys ) ; then
1085    echo "IGCM_sys_Get_Master :" $@
1086  fi
1087  if [ $DRYRUN = 0 ]; then
1088    if ( [ ! -d ${1} ] && [ ! -f ${1} ] ) ; then
1089      echo "WARNING : IGCM_sys_Get_Master ${1} DOES NOT EXIST ."
1090      IGCM_debug_PopStack "IGCM_sys_Get_Master"
1091      return
1092    fi
1093
1094    typeset NB_ESSAI DELAI status i
1095    # number of tentative
1096    NB_ESSAI=3
1097    # time delay between tentative
1098    DELAI=2
1099
1100    i=0
1101    while [ $i -lt $NB_ESSAI ] ; do
1102      \cp -urL $1 $2 > out_rsync 2>&1
1103      status=$?
1104      if [ ${status} -gt 0 ]; then
1105        IGCM_debug_Print 2 "IGCM_sys_Get_Master : cp failed error code ${status} ${i}/${NB_ESSAI}"
1106        IGCM_debug_Print 2 "IGCM_sys_Get_Master : sleep ${DELAI} seconds and try again."
1107        sleep $DELAI
1108      else
1109        break
1110      fi
1111      (( i = i + 1 ))
1112    done
1113
1114    if [ ${status} -gt 0 ] ; then
1115      echo "IGCM_sys_Get_Master : error."
1116      cat out_rsync
1117      IGCM_debug_Exit "IGCM_sys_Get_Master"
1118    else
1119      \rm out_rsync
1120    fi
1121  else
1122    ( ${DEBUG_debug} ) && echo "DRYRUN mode = " $DRYRUN >> stack
1123  fi
1124  IGCM_debug_PopStack "IGCM_sys_Get_Master"
1125}
1126
1127#====================================================
1128#- Call IGCM_sys_Mirror_libIGCM now !
1129if ( $MirrorlibIGCM ) ; then
1130  IGCM_sys_Mirror_libIGCM
1131fi
1132
1133#D-#==================================================
1134#D-function IGCM_sys_Put_Rest
1135#D-* Purpose: Put computied restarts on ${ARCHIVE}.
1136#D-           File and target directory must exist.
1137#D-* Examples:
1138#D-
1139function IGCM_sys_Put_Rest {
1140  IGCM_debug_PushStack "IGCM_sys_Put_Rest" $@
1141  if ( $DEBUG_sys ) ; then
1142    echo "IGCM_sys_Put_Rest :" $@
1143  fi
1144  if [ $DRYRUN = 0 ]; then
1145    if [ ! -f ${1} ] ; then
1146      echo "ERROR : IGCM_sys_Put_Rest ${1} DOES NOT EXIST ."
1147      IGCM_debug_Exit "IGCM_sys_Put_Rest"
1148    fi
1149
1150    typeset status
1151    #
1152    if [ X${JobType} = XRUN ] ; then
1153      IGCM_sys_Chmod 444 ${1}
1154    fi
1155
1156    #
1157    # USUAL WAY
1158    \cp $1 $2 > out_rsync 2>&1
1159    status=$?
1160
1161#       #RSYNC WITH NETWORK SSH CALL
1162#       echo ${RSYNC} ${RSYNC_opt} -e ssh ${RUN_DIR}/$1 ${STOREHOST}:${2} > out_rsync 2>&1
1163#       ${RSYNC} ${RSYNC_opt} -e ssh ${RUN_DIR}/$1 ${STOREHOST}:${2} >> out_rsync 2>&1
1164
1165#       #RSYNC WITH NFS USE
1166#       echo ${RSYNC} ${RSYNC_opt} ${RUN_DIR}/$1 ${2} > out_rsync 2>&1
1167#       ${RSYNC} ${RSYNC_opt} ${RUN_DIR}/$1 ${2} >> out_rsync 2>&1
1168
1169#       status=$?
1170#       IGCM_sys_Rsync_out $status
1171
1172#       ${libIGCM}/libIGCM_sys/IGCM_analyse_rsync_out.awk out_rsync
1173#       (( status=status+$? ))
1174
1175    if [ ${status} -gt 0 ] ; then
1176      echo "IGCM_sys_Put_Rest : cp failed error code ${status}"
1177      cat out_rsync
1178      IGCM_debug_Exit "IGCM_sys_Put_Rest"
1179    else
1180      \rm out_rsync
1181    fi
1182  else
1183    ( ${DEBUG_debug} ) && echo "DRYRUN mode = " $DRYRUN >> stack
1184  fi
1185  IGCM_debug_PopStack "IGCM_sys_Put_Rest"
1186}
1187
1188#D-#==================================================
1189#D-function IGCM_sys_PutBuffer_Rest
1190#D-* Purpose: Put computied restarts on ${SCRATCHDIR}.
1191#D-           File and target directory must exist.
1192#D-* Examples:
1193#D-
1194function IGCM_sys_PutBuffer_Rest {
1195  IGCM_debug_PushStack "IGCM_sys_PutBuffer_Rest" $@
1196  if ( $DEBUG_sys ) ; then
1197    echo "IGCM_sys_PutBuffer_Rest :" $@
1198  fi
1199  if [ $DRYRUN = 0 ]; then
1200    if [ ! -f ${1} ] ; then
1201      echo "ERROR : IGCM_sys_PutBuffer_Rest ${1} DOES NOT EXIST ."
1202      IGCM_debug_Exit "IGCM_sys_PutBuffer_Rest"
1203    fi
1204
1205    typeset status
1206    #
1207    if [ X${JobType} = XRUN ] ; then
1208      IGCM_sys_Chmod 444 ${1}
1209    fi
1210
1211    #
1212    # USUAL WAY
1213    \cp $1 $2 > out_rsync 2>&1
1214    status=$?
1215
1216    if [ ${status} -gt 0 ] ; then
1217      echo "IGCM_sys_PutBuffer_Rest : error code ${status}"
1218      cat out_rsync
1219      IGCM_debug_Exit "IGCM_sys_PutBuffer_Rest"
1220    else
1221      \rm out_rsync
1222    fi
1223  else
1224    ( ${DEBUG_debug} ) && echo "DRYRUN mode = " $DRYRUN >> stack
1225  fi
1226  IGCM_debug_PopStack "IGCM_sys_PutBuffer_Rest"
1227}
1228
1229#D-#==================================================
1230#D-function IGCM_sys_Put_Out
1231#D-* Purpose: Copy a file on ${ARCHIVE} after having chmod it in readonly
1232#D-* Examples:
1233#D-
1234function IGCM_sys_Put_Out {
1235  IGCM_debug_PushStack "IGCM_sys_Put_Out" $@
1236  if ( $DEBUG_sys ) ; then
1237    echo "IGCM_sys_Put_Out :" $@
1238  fi
1239
1240  typeset NB_ESSAI DELAI status i exist skip
1241
1242  # number of tentative
1243  NB_ESSAI=3
1244  # time delay between tentative
1245  DELAI=2
1246
1247  if [ $DRYRUN = 0 ]; then
1248    if [ ! -f ${1} ] ; then
1249      echo "WARNING : IGCM_sys_Put_Out ${1} DOES NOT EXIST ."
1250      IGCM_debug_PopStack "IGCM_sys_Put_Out"
1251      return 1
1252    fi
1253    #
1254    IGCM_sys_MkdirArchive $( dirname $2 )
1255    #
1256
1257    #=====================================================
1258    #         COMMENT OUT DOUBLE COPY ON SCRATCHDIR
1259    #=====================================================
1260
1261    #echo ${2} | grep "${R_OUT}" > /dev/null 2>&1
1262    #if [ $? -eq 0 ] ; then
1263    #    typeset WORKPATH FILEPATH
1264    #    WORKPATH=$( dirname $2 | sed -e "s|${R_OUT}|${R_BUF}|" )
1265    #    IGCM_sys_MkdirWork ${WORKPATH}
1266    #    FILEPATH=${WORKPATH}/$( basename $2 )
1267    #    #
1268    #    IGCM_sys_Cp ${1} ${FILEPATH}
1269    #fi
1270
1271    if [ X${JobType} = XRUN ] ; then
1272      if [ X${3} = X ] ; then
1273        IGCM_sys_Chmod 444 ${1}
1274      fi
1275    fi
1276    #
1277
1278    exist=false
1279    skip=false
1280    if [ -f $2 ] ; then
1281      IGCM_debug_Print 1 "$2 already exist"
1282      #dmget $2
1283      ccc_hsm get $2
1284      exist=true
1285      if [ "X$( diff $1 $2 )" = X ] ; then
1286        IGCM_debug_Print 2 "$1 and $2 are the same file, we skip the copy"
1287        skip=true
1288      else
1289        IGCM_debug_Print 2 "$1 and $2 are not the same file, we force the copy"
1290        skip=false
1291      fi
1292    fi
1293    #
1294    if ( [ X${exist} = Xtrue ] && [ X${skip} = Xfalse ] ) ; then
1295      IGCM_sys_Chmod u+w $2
1296    fi
1297
1298    if [ X${skip} = Xfalse ] ; then
1299      i=0
1300      while [ $i -lt $NB_ESSAI ] ; do
1301        # USUAL WAY
1302        \cp $1 $2 > out_rsync 2>&1
1303        status=$?
1304        if [ ${status} -gt 0 ]; then
1305          IGCM_debug_Print 2 "IGCM_sys_Put_Out : cp failed error code ${status} ${i}/${NB_ESSAI}"
1306          IGCM_debug_Print 2 "IGCM_sys_Put_Out : sleep ${DELAI} seconds and try again."
1307          sleep $DELAI
1308        else
1309          break
1310        fi
1311        (( i = i + 1 ))
1312      done
1313    fi
1314
1315#       #RSYNC WITH NETWORK SSH CALL
1316#       echo ${RSYNC} ${RSYNC_opt} -e ssh ${RUN_DIR}/$1 ${STOREHOST}:${2} > out_rsync 2>&1
1317#       ${RSYNC} ${RSYNC_opt} -e ssh ${RUN_DIR}/$1 ${STOREHOST}:${2} >> out_rsync 2>&1
1318
1319#       #RSYNC WITH NFS USE
1320#       echo ${RSYNC} ${RSYNC_opt} ${RUN_DIR}/$1 ${2} > out_rsync 2>&1
1321#       ${RSYNC} ${RSYNC_opt} ${RUN_DIR}/$1 ${2} >> out_rsync 2>&1
1322
1323#       status=$?
1324#       IGCM_sys_Rsync_out $status
1325
1326#       ${libIGCM}/libIGCM_sys/IGCM_analyse_rsync_out.awk out_rsync
1327#       (( status=status+$? ))
1328
1329    if [ ${status} -gt 0 ] ; then
1330      echo "IGCM_sys_Put_Out : error."
1331      cat out_rsync
1332      IGCM_debug_Exit "IGCM_sys_Put_Out"
1333    else
1334      \rm out_rsync
1335    fi
1336  else
1337    ( ${DEBUG_debug} ) && echo "DRYRUN mode = " $DRYRUN >> stack
1338  fi
1339  IGCM_debug_PopStack "IGCM_sys_Put_Out"
1340  return 0
1341}
1342
1343#D-#==================================================
1344#D-function IGCM_sys_PutBuffer_Out
1345#D-* Purpose: Copy a file on ${SCRATCHDIR} after having chmod it in readonly
1346#D-* Examples:
1347#D-
1348function IGCM_sys_PutBuffer_Out {
1349  IGCM_debug_PushStack "IGCM_sys_PutBuffer_Out" $@
1350  if ( $DEBUG_sys ) ; then
1351    echo "IGCM_sys_PutBuffer_Out :" $@
1352  fi
1353
1354  typeset NB_ESSAI DELAI status i exist skip
1355
1356  # number of tentative
1357  NB_ESSAI=3
1358  # time delay between tentative
1359  DELAI=2
1360
1361  if [ $DRYRUN = 0 ]; then
1362    if [ ! -f ${1} ] ; then
1363      echo "WARNING : IGCM_sys_PutBuffer_Out ${1} DOES NOT EXIST ."
1364      IGCM_debug_PopStack "IGCM_sys_PutBuffer_Out"
1365      return 1
1366    fi
1367    #
1368    IGCM_sys_Mkdir $( dirname $2 )
1369    #
1370
1371    if [ X${JobType} = XRUN ] ; then
1372      if [ X${3} = X ] ; then
1373        IGCM_sys_Chmod 444 ${1}
1374      fi
1375    fi
1376
1377    exist=false
1378    skip=false
1379    if [ -f $2 ] ; then
1380      IGCM_debug_Print 1 "$2 already exist"
1381      exist=true
1382      if [ "X$( diff $1 $2 )" = X ] ; then
1383        IGCM_debug_Print 2 "$1 and $2 are the same file, we skip the copy"
1384        skip=true
1385      else
1386        IGCM_debug_Print 2 "$1 and $2 are not the same file, we force the copy"
1387        skip=false
1388      fi
1389    fi
1390    #
1391    if ( [ X${exist} = Xtrue ] && [ X${skip} = Xfalse ] ) ; then
1392      IGCM_sys_Chmod u+w $2
1393    fi
1394
1395    if [ X${skip} = Xfalse ] ; then
1396      i=0
1397      while [ $i -lt $NB_ESSAI ] ; do
1398        # USUAL WAY
1399        \cp $1 $2 > out_rsync 2>&1
1400        status=$?
1401        if [ ${status} -gt 0 ]; then
1402          IGCM_debug_Print 2 "IGCM_sys_PutBuffer_Out : cp failed error code ${status} ${i}/${NB_ESSAI}"
1403          IGCM_debug_Print 2 "IGCM_sys_PutBuffer_Out : sleep ${DELAI} seconds and try again."
1404          sleep $DELAI
1405        else
1406          break
1407        fi
1408        (( i = i + 1 ))
1409      done
1410    fi
1411
1412    if [ ${status} -gt 0 ] ; then
1413      echo "IGCM_sys_PutBuffer_Out : error."
1414      cat out_rsync
1415      IGCM_debug_Exit "IGCM_sys_PutBuffer_Out"
1416    else
1417      \rm out_rsync
1418    fi
1419  else
1420    ( ${DEBUG_debug} ) && echo "DRYRUN mode = " $DRYRUN >> stack
1421  fi
1422  IGCM_debug_PopStack "IGCM_sys_PutBuffer_Out"
1423  return 0
1424}
1425
1426#D-#==================================================
1427#D-function IGCM_sys_Get
1428#D-* Purpose: Get a file from ${ARCHIVE}
1429#D-* Examples: IGCM_sys_Get myfile /destpath/myfile_with_PREFIX
1430#D-            IGCM_sys_Get /l Array_contain_myfiles /destpath/
1431function IGCM_sys_Get {
1432  IGCM_debug_PushStack "IGCM_sys_Get" $@
1433
1434  typeset DEST dm_liste ifile target file_work
1435  typeset NB_ESSAI DELAI status i
1436
1437  if ( $DEBUG_sys ) ; then
1438    echo "IGCM_sys_Get :" $@
1439  fi
1440
1441  # number of tentative
1442  NB_ESSAI=3
1443  # time delay between tentative
1444  DELAI=2
1445
1446  if [ $DRYRUN -le 2 ]; then
1447    if [ X${1} = X'/l' ] ; then
1448      # test if the first file is present in the old computation :
1449      eval set +A dm_liste \${${2}}
1450    else
1451      eval set +A dm_liste ${1}
1452    fi
1453    eval DEST=\${${#}}
1454
1455    #=====================================================
1456    #         COMMENT OUT DOUBLE COPY ON SCRATCHDIR
1457    #=====================================================
1458
1459    # Is it an R_OUT file (not R_IN) ?
1460    #echo ${dm_liste[0]} | grep "${R_OUT}" > /dev/null 2>&1
1461    #if [ $? -eq 0 ] ; then
1462    #    # Yes  ? then we try to get it in SCRATCHDIR
1463    #    set +A file_work $( echo ${dm_liste[*]} | sed -e "s|${R_OUT}|${R_BUF}|g" )
1464    #    if [ -f ${file_work[0]} ] ; then
1465    #   IGCM_sys_Cp ${file_work[*]} ${DEST}
1466    #   IGCM_debug_PopStack "IGCM_sys_Get"
1467    #   return
1468    #    fi
1469    #fi
1470
1471    ccc_hsm get ${dm_liste[*]} > out_rsync 2>&1
1472    status=$?
1473    if [ ${status} -gt 0 ] ; then
1474      echo "WARNING IGCM_sys_Get : error code ${status}"
1475      cat out_rsync
1476      echo "WARNING IGCM_sys_Get : will stop later if the cp fails."
1477    fi
1478
1479    #if [ ${status} -gt 0 ] ; then
1480    #    if [ ! "X$( grep "Lost dmusrcmd connection" out_rsync )" = "X" ] ; then
1481    #   cat out_rsync
1482    #   echo "WARNING IGCM_sys_Get : Lost dmusrcmd connection : "
1483    #   sleep 30
1484    #   echo "We try another time"
1485    ##  dmget ${dm_liste[*]} > out_rsync 2>&1
1486    #   ccc_hsm get ${dm_liste[*]} > out_rsync 2>&1
1487    #   status=$?
1488    #   if [ ${status} -gt 0 ] ; then
1489    #       echo "ERROR IGCM_sys_Get : again demigration error :"
1490    #       cat out_rsync
1491    #       IGCM_debug_Exit "IGCM_sys_Get"
1492    #   fi
1493    #    else
1494    #   echo "ERROR IGCM_sys_Get : demigration error :"
1495    #   cat out_rsync
1496    #   IGCM_debug_Exit "IGCM_sys_Get"
1497    #    fi
1498    #fi
1499
1500    #   #RSYNC WITH NETWORK SSH CALL
1501    #   echo ${RSYNC} ${RSYNC_opt} -e ssh ${STOREHOST}:"${dm_liste}" ${STOREHOST}:${RUN_DIR}/${DEST} > out_rsync 2>&1
1502    #   ${RSYNC} ${RSYNC_opt} -e ssh ${STOREHOST}:"${dm_liste}" ${STOREHOST}:${RUN_DIR}/${DEST} >> out_rsync 2>&1
1503
1504    #   #RSYNC WITH NFS USE
1505    #   echo ${RSYNC} ${RSYNC_opt} ${dm_liste} ${RUN_DIR}/${DEST} > out_rsync 2>&1
1506    #   ${RSYNC} ${RSYNC_opt} ${dm_liste} ${RUN_DIR}/${DEST} >> out_rsync 2>&1
1507
1508    #   status=$?
1509    #   IGCM_sys_Rsync_out $status
1510
1511    #   ${libIGCM}/libIGCM_sys/IGCM_analyse_rsync_out.awk out_rsync
1512    #   (( status=status+$? ))
1513
1514    #USUAL WAY
1515    if [ X${1} = X'/l' ] ; then
1516      for target in ${dm_liste[*]} ; do
1517        local_file=$( basename ${target} )
1518        # test if the target file is present before the loop
1519        IGCM_sys_TestFileArchive ${target}
1520        status=$?
1521        if [ ${status} -gt 0 ] ; then
1522          echo "IGCM_sys_Get, ERROR : regular file ${target} DOES NOT EXIST ."
1523          IGCM_debug_Exit "IGCM_sys_Get"
1524        else
1525          i=0
1526          while [ $i -lt $NB_ESSAI ] ; do
1527            \cp ${target} ${DEST}/${local_file} >> out_rsync 2>&1
1528            status=$?
1529            if [ ${status} -gt 0 ]; then
1530              IGCM_debug_Print 2 "IGCM_sys_Get : cp failed error code ${status} ${i}/${NB_ESSAI}"
1531              IGCM_debug_Print 2 "IGCM_sys_Get : sleep ${DELAI} seconds and try again."
1532              sleep $DELAI
1533            else
1534              break
1535            fi
1536            (( i = i + 1 ))
1537          done
1538          if [ ${status} -gt 0 ] ; then
1539            echo "IGCM_sys_Get : error"
1540            cat out_rsync
1541            \rm out_rsync
1542            IGCM_debug_Exit "IGCM_sys_Get"
1543          else
1544            \rm out_rsync
1545          fi
1546        fi
1547      done
1548    else
1549      i=0
1550      while [ $i -lt $NB_ESSAI ] ; do
1551        \cp ${dm_liste} ${DEST} >> out_rsync 2>&1
1552        status=$?
1553        if [ ${status} -gt 0 ]; then
1554          IGCM_debug_Print 2 "IGCM_sys_Get : cp failed error code ${status} ${i}/${NB_ESSAI}"
1555          IGCM_debug_Print 2 "IGCM_sys_Get : sleep ${DELAI} seconds and try again."
1556          sleep $DELAI
1557        else
1558          break
1559        fi
1560        (( i = i + 1 ))
1561      done
1562      if [ ${status} -gt 0 ] ; then
1563        echo "IGCM_sys_Get : error"
1564        cat out_rsync
1565        \rm out_rsync
1566        IGCM_debug_Exit "IGCM_sys_Get"
1567      else
1568        \rm out_rsync
1569      fi
1570    fi
1571  else
1572    ( ${DEBUG_debug} ) && echo "DRYRUN mode = " $DRYRUN >> stack
1573  fi
1574  IGCM_debug_PopStack "IGCM_sys_Get"
1575}
1576
1577#D-#==================================================
1578#D-function IGCM_sys_GetBuffer
1579#D-* Purpose: Get a file from ${SCRATCHDIR}
1580#D-* Examples: IGCM_sys_GetBuffer myfile /destpath/myfile_with_PREFIX
1581#D-            IGCM_sys_GetBuffer /l Array_contain_myfiles /destpath/
1582function IGCM_sys_GetBuffer {
1583  IGCM_debug_PushStack "IGCM_sys_GetBuffer" $@
1584
1585  typeset DEST buf_liste ifile target file_work
1586  typeset NB_ESSAI DELAI status i
1587
1588  if ( $DEBUG_sys ) ; then
1589    echo "IGCM_sys_GetBuffer :" $@
1590  fi
1591
1592  # number of tentative
1593  NB_ESSAI=3
1594  # time delay between tentative
1595  DELAI=2
1596
1597  if [ $DRYRUN -le 2 ]; then
1598    if [ X${1} = X'/l' ] ; then
1599      # test if the first file is present in the old computation :
1600      eval set +A buf_liste \${${2}}
1601    else
1602      eval set +A buf_liste ${1}
1603    fi
1604    eval DEST=\${${#}}
1605
1606    #USUAL WAY
1607    if [ X${1} = X'/l' ] ; then
1608      for target in ${buf_liste[*]} ; do
1609        local_file=$( basename ${target} )
1610        i=0
1611        while [ $i -lt $NB_ESSAI ] ; do
1612          \cp ${target} ${DEST}/${local_file} >> out_rsync 2>&1
1613          status=$?
1614          if [ ${status} -gt 0 ]; then
1615            IGCM_debug_Print 2 "IGCM_sys_GetBuffer : cp failed error code ${status} ${i}/${NB_ESSAI}"
1616            IGCM_debug_Print 2 "IGCM_sys_GetBuffer : sleep ${DELAI} seconds and try again."
1617            sleep $DELAI
1618          else
1619            break
1620          fi
1621          (( i = i + 1 ))
1622        done
1623        if [ ${status} -gt 0 ] ; then
1624          echo "IGCM_sys_Get : error"
1625          cat out_rsync
1626          \rm out_rsync
1627          IGCM_debug_Exit "IGCM_sys_GetBuffer"
1628        else
1629          \rm out_rsync
1630        fi
1631      done
1632    else
1633      i=0
1634      while [ $i -lt $NB_ESSAI ] ; do
1635        \cp ${buf_liste} ${DEST} >> out_rsync 2>&1
1636        status=$?
1637        if [ ${status} -gt 0 ]; then
1638          IGCM_debug_Print 2 "IGCM_sys_GetBuffer : cp failed error code ${status} ${i}/${NB_ESSAI}"
1639          IGCM_debug_Print 2 "IGCM_sys_GetBuffer : sleep ${DELAI} seconds and try again."
1640          sleep $DELAI
1641        else
1642          break
1643        fi
1644        (( i = i + 1 ))
1645      done
1646      if [ ${status} -gt 0 ] ; then
1647        echo "IGCM_sys_Get : error"
1648        cat out_rsync
1649        \rm out_rsync
1650        IGCM_debug_Exit "IGCM_sys_GetBuffer"
1651      else
1652        \rm out_rsync
1653      fi
1654    fi
1655  else
1656    ( ${DEBUG_debug} ) && echo "DRYRUN mode = " $DRYRUN >> stack
1657  fi
1658  IGCM_debug_PopStack "IGCM_sys_GetBuffer"
1659}
1660
1661#D-#==================================================
1662#D-function IGCM_sys_GetDate_FichWork
1663#D-* Purpose: donne la date filesys d'un fichier sur le filesystem WORK
1664#D-* Examples:
1665#D-
1666function IGCM_sys_GetDate_FichWork {
1667  IGCM_debug_PushStack "IGCM_sys_FichWork" $@
1668  if ( $DEBUG_sys ) ; then
1669    echo "IGCM_sys_GetDate_FichWork :" $@
1670  fi
1671  typeset dateF
1672  set +A dateF -- $( ls -l --full-time --time-style='+%Y%m%d%H%M%S' ${1} )
1673  eval ${2}=${dateF[5]}
1674
1675    # donne la date filesys d'un fichier sur la machine work
1676  IGCM_debug_PopStack "IGCM_sys_FichWork"
1677}
1678
1679#D-#==================================================
1680#D-function IGCM_sys_GetDate_FichArchive
1681#D-* Purpose: donne la date filesys d'un fichier sur le filesystem ARCHIVE
1682#D-* Examples:
1683#D-
1684function IGCM_sys_GetDate_FichArchive {
1685  IGCM_debug_PushStack "IGCM_sys_FichArchive" $@
1686  if ( $DEBUG_sys ) ; then
1687    echo "IGCM_sys_GetDate_FichArchive :" $@
1688  fi
1689  typeset dateF
1690  set +A dateF -- $( ls -l --full-time --time-style='+%Y%m%d%H%M%S' ${1} )
1691  eval ${2}=${dateF[5]}
1692
1693  IGCM_debug_PopStack "IGCM_sys_FichArchive"
1694}
1695
1696#D-#==================================================
1697#D-function IGCM_sys_Dods_Rm
1698#D-* Purpose: DO NOTHING ! Put ${ARCHIVE} files on DODS internet protocole.
1699#D-* Examples:
1700#D-
1701function IGCM_sys_Dods_Rm {
1702  if ( $DEBUG_sys ) ; then
1703    echo "IGCM_sys_Dods_Rm :" $@
1704  fi
1705  typeset status
1706  if [ $DRYRUN = 0 ]; then
1707
1708#    if [ ! -d /dmnfs/cont003/dods/public/${LOGIN}/${R_DODS}/${1} ] ; then
1709#      echo "WARNING : IGCM_sys_Dods_Rm /dmnfs/cont003/dods/public/${LOGIN}/${R_DODS}/${1} DOES NOT EXIST ."
1710#      echo "Nothing has been done."
1711#      return
1712#    fi
1713
1714    /ccc/cont003/home/dsm/p86ipsl/bin/dods_rm public/${LOGIN}/${R_DODS}/${1} # > out_dods_rm 2>&1
1715    status=$?
1716
1717#       if [ ${status} -gt 0 ] ; then
1718#           echo "IGCM_sys_Dods_Rm : error."
1719#           cat out_dods_rm
1720#           IGCM_debug_Exit "IGCM_sys_Dods_Rm"
1721#       else
1722#           rm out_dods_rm
1723#       fi
1724
1725  else
1726    ( ${DEBUG_debug} ) && echo "DRYRUN mode = " $DRYRUN >> stack
1727  fi
1728  return $status
1729}
1730
1731#D-#==================================================
1732#D-function IGCM_sys_Dods_Cp
1733#D-* Purpose: Copy $(ARCHIVE) files on DODS internet protocole.
1734#D-* Examples:
1735#D-
1736function IGCM_sys_Dods_Cp {
1737  if ( $DEBUG_sys ) ; then
1738    echo "IGCM_sys_Dods_Cp :" $@
1739  fi
1740  typeset status
1741  if [ $DRYRUN = 0 ]; then
1742
1743#    if [ ! -d ${R_SAVE}/${1} ] ; then
1744#      echo "WARNING : IGCM_sys_Dods_Cp ${R_SAVE}/${1} DOES NOT EXIST ."
1745#      echo "Nothing has been done."
1746#      return
1747#    fi
1748
1749    /ccc/cont003/home/dsm/p86ipsl/bin/dods_cp ${1} public/${LOGIN}/${R_DODS} # > out_dods_cp 2>&1
1750    status=$?
1751
1752#       if [ ${status} -gt 0 ] ; then
1753#           echo "IGCM_sys_Dods_Cp : error."
1754#           cat out_dods_cp
1755#           IGCM_debug_Exit "IGCM_sys_Dods_Cp"
1756#       else
1757#           rm out_dods_cp
1758#       fi
1759
1760  else
1761    ( ${DEBUG_debug} ) && echo "DRYRUN mode = " $DRYRUN >> stack
1762  fi
1763  return $status
1764}
1765
1766#D-#==================================================
1767#D-function IGCM_sys_Put_Dods
1768#D-* Purpose: Put $(ARCHIVE) files on DODS internet protocole.
1769#D-* Examples:
1770#D-
1771function IGCM_sys_Put_Dods {
1772  IGCM_debug_PushStack "IGCM_sys_Put_Dods" $@
1773  if ( $DEBUG_sys ) ; then
1774    echo "IGCM_sys_Put_Dods :" $@
1775  fi
1776  #set -vx
1777  typeset status
1778  if [ $DRYRUN = 0 ]; then
1779    if ( [ ! -d ${R_SAVE}/${1} ] && [ ! -d ${R_FIGR}/${1} ] ) ; then
1780      echo "WARNING IGCM_sys_Put_Dods : None of the following directories exist. Exactly one should."
1781      echo "WARNING IGCM_sys_Put_Dods : ${R_SAVE}/${1} DOES NOT EXIST."
1782      echo "WARNING IGCM_sys_Put_Dods : ${R_FIGR}/${1} DOES NOT EXIST."
1783      IGCM_debug_PopStack "IGCM_sys_Put_Dods"
1784      return
1785    fi
1786
1787    if ( [ -d ${R_SAVE}/${1} ] && [ -d ${R_FIGR}/${1} ] ) ; then
1788      echo "WARNING IGCM_sys_Put_Dods : Both of the following directories exist. Exactly one should."
1789      echo "WARNING IGCM_sys_Put_Dods : ${R_SAVE}/${1} EXISTS."
1790      echo "WARNING IGCM_sys_Put_Dods : ${R_FIGR}/${1} EXISTS."
1791      IGCM_debug_PopStack "IGCM_sys_Put_Dods"
1792      return
1793    fi
1794    #
1795    if [ -d ${R_SAVE}/${1} ] ; then
1796      cd ${R_SAVE}
1797    elif [ -d ${R_FIGR}/${1} ] ; then
1798      cd ${R_FIGR}
1799    fi
1800
1801    IGCM_sys_Dods_Rm ${1}
1802    IGCM_sys_Dods_Cp ${1}
1803    status=0
1804
1805    if [ ${status} -gt 0 ] ; then
1806      echo "IGCM_sys_Put_Dods : error."
1807      IGCM_debug_Exit "IGCM_sys_Put_Dods"
1808    fi
1809  else
1810    ( ${DEBUG_debug} ) && echo "DRYRUN mode = " $DRYRUN >> stack
1811  fi
1812  IGCM_debug_PopStack "IGCM_sys_Put_Dods"
1813}
1814
1815##############################################################
1816# REBUILD OPERATOR
1817
1818function IGCM_sys_rebuild {
1819  IGCM_debug_PushStack "IGCM_sys_rebuild" -- $@
1820  if ( $DEBUG_sys ) ; then
1821    echo "IGCM_sys_rebuild :" $@
1822  fi
1823
1824  typeset NB_ESSAI DELAI status i firstArg
1825  # number of tentative
1826  NB_ESSAI=3
1827  # time delay between tentative
1828  DELAI=2
1829
1830  i=0
1831  while [ $i -lt $NB_ESSAI ] ; do
1832    ~p86ipsl/CESIUM/bin/rebuild -f -o $@ > out_rsync 2>&1
1833    status=$?
1834    if [ ${status} -gt 0 ] ; then
1835      IGCM_debug_Print 2 "IGCM_sys_rebuild : error code ${status}"
1836      cat out_rsync
1837      \rm out_rsync
1838      IGCM_debug_Print 2 "IGCM_sys_rebuild : ${i}/${NB_ESSAI} sleep ${DELAI} seconds and try again."
1839      firstArg=${1}
1840      \rm ${firstArg}
1841      sleep $DELAI
1842    else
1843      \rm out_rsync
1844      break
1845    fi
1846    (( i = i + 1 ))
1847  done
1848
1849  if [ ${status} -gt 0 ] ; then
1850    echo "IGCM_sys_rebuild : rebuild error"
1851    IGCM_debug_Exit "rebuild"
1852  fi
1853
1854  IGCM_debug_PopStack "IGCM_sys_rebuild"
1855}
1856
1857function IGCM_sys_rebuild_station {
1858  IGCM_debug_PushStack "IGCM_sys_rebuild_station" -- $@
1859  typeset i list_opt file_in file_out prefix_invert list_invert
1860  if ( $DEBUG_sys ) ; then
1861    echo "IGCM_sys_rebuild_station :" $@
1862  fi
1863  list_opt=$@
1864
1865  # Invert Axis : t,x -> x,t
1866  #               t,pres,x -> x,t,pres
1867  # So that we can concatenate along x
1868  i=0
1869  for file_in in ${list_opt} ; do
1870    (( i = i + 1))
1871    [ ${i} = 1 ] && file_out=${file_in} && continue
1872    prefix_invert=$( basename ${file_in} .nc )
1873    IGCM_sys_ncpdq -a x,time_counter -a x,time_counter,presnivs ${file_in} ${prefix_invert}_xt.nc
1874    list_invert[${#list_invert[*]}]=${prefix_invert}_xt.nc
1875  done
1876
1877  # Concatenate
1878  IGCM_sys_ncrcat ${list_invert[*]} histstn_xt.nc
1879
1880  # Re-ivert file
1881  IGCM_sys_ncpdq -a time_counter,x -a time_counter,presnivs,x histstn_xt.nc ${file_out}
1882
1883  # Station re-ordering is too expansive to be run within libICGM
1884  # This is due to (ncpdq - nrcat - ncpdq) I/O sequence.
1885  # This re-ordering must be done "in memory" by the cmorization process
1886  # Anyway this is the best sequence using (ncpdq - nrcat - ncpdq)
1887  # BEGIN reordering
1888
1889  # Only LMDZ text output contains the exact ordering of the station.
1890  # We isolate this in the code below:
1891  #  0  38  -157.5000000000000  70.98591549295774
1892  #  0  54  27.49999999999999   67.18309859154928
1893  #  0  56  -62.50000000000001  82.39436619718309
1894  #  0  79  12.49999999999999   78.59154929577466
1895  #  0  116 -165.0000000000000  76.05633802816901
1896  #  0  117 130.0000000000000   70.98591549295774
1897  #  0  118 110.0000000000000   87.46478873239437
1898  #  1  40  4.999999999999995   51.97183098591550
1899#  typeset iStation iProc list_opt file_in file_out prefix_invert
1900#  typeset -Z4 j4
1901#  typeset -Z3 j3
1902
1903#  unset list_opt
1904#  set +A list_opt $@
1905
1906  # Filename after rebuild
1907#  file_out=${list_opt[0]}
1908  # Prefix of output files
1909#  prefix_invert=$( basename ${file_out} .nc )
1910  # Number of procs
1911#  num_proc=$( grep -i mpi_size ${PREFIX}_${Exe_Output} | wc -l )
1912
1913#  iProc=0
1914#  while [ ${iProc} -lt ${num_proc} ] ; do
1915    # Array containing Station as a number
1916#    unset proc_stn
1917#    set +A proc_stn $( grep "iophy_mpi rank ip lon lat  $iProc" ${PREFIX}_${Exe_Output} | sed -e "s/iophy_mpi rank ip lon lat //g" | awk ' {print $2}' )
1918    # Number of stations produced by processor proc
1919#    stationLast=${#proc_stn[*]}
1920    # Proc number on 4 digits
1921#    j4=${iProc}
1922    # Init
1923#    iStation=0
1924#    while [ ${iStation} -lt ${stationLast} ] ; do
1925      # Station number on 3 digits
1926#      j3=${proc_stn[${iStation}]}
1927      # Extract station
1928      # Invert Axis : t,x -> x,t
1929      #               t,pres,x -> x,t,pres
1930      # So that we can concatenate along x
1931#      IGCM_sys_ncpdq -a x,time_counter -a x,time_counter,presnivs -d x,$iStation,$iStation ${prefix_invert}_${j4}.nc ${prefix_invert}_stn_${j3}.nc
1932#      (( iStation = iStation + 1 ))
1933#    done
1934#    (( iProc = iProc + 1 ))
1935#  done
1936
1937  # Concatenate all station along x
1938#  IGCM_sys_ncrcat ${prefix_invert}_stn_???.nc ${prefix_invert}_xt.nc
1939
1940  # Re-invert file
1941#  IGCM_sys_ncpdq -a time_counter,x -a time_counter,presnivs,x ${prefix_invert}_xt.nc ${file_out}
1942
1943  # END reordering
1944
1945  IGCM_debug_PopStack "IGCM_sys_rebuild_station"
1946}
1947
1948############################################################
1949# Activate Running Environnment Variables
1950
1951function IGCM_sys_activ_variables {
1952  IGCM_debug_PushStack "IGCM_sys_activ_variables"
1953  if ( $DEBUG_sys ) ; then
1954    echo "IGCM_sys_activ_variables"
1955  fi
1956
1957  ulimit -s unlimited
1958
1959  IGCM_debug_PopStack "IGCM_sys_activ_variables"
1960}
1961
1962############################################################
1963# Desactivate Running Environnment Variables
1964
1965function IGCM_sys_desactiv_variables {
1966  IGCM_debug_PushStack "IGCM_sys_desactiv_variables"
1967  if ( $DEBUG_sys ) ; then
1968    echo "IGCM_sys_desactiv_variables"
1969  fi
1970  IGCM_debug_PopStack "IGCM_sys_desactiv_variables"
1971}
1972
1973############################################################
1974# Build MPI/OMP scripts run file (dummy function)
1975
1976function IGCM_sys_build_run_file {
1977
1978IGCM_debug_Print 3 " dummy function : IGCM_sys_build_run_file "
1979
1980}
1981
1982############################################################
1983# Build MPI/OMP scripts
1984function IGCM_sys_build_execution_scripts
1985{
1986  IGCM_debug_PushStack "IGCM_sys_build_execution_scripts" $@
1987  if ( $DEBUG_sys ) ; then
1988    echo "IGCM_sys_build_execution_scripts " $@
1989  fi
1990
1991    # Verification with MSUB parameter
1992  EXECUTION=${HOST_MPIRUN_COMMAND}
1993
1994  if ( ${OK_PARA_MPMD} ) ; then
1995
1996    if [ -f run_file ] ; then
1997      IGCM_sys_Rm -f run_file
1998    fi
1999    touch run_file
2000
2001# run_file construction
2002
2003# Then first loop on the components for the coupler ie oasis
2004
2005### the coupler ie oasis must be the first one
2006    for comp in ${config_ListOfComponents[*]} ; do
2007
2008      eval ExeNameIn=\${config_Executable_${comp}[0]}
2009      eval ExeNameOut=\${config_Executable_${comp}[1]}
2010
2011        # for CPL component only
2012      if [ "X${comp}" = "XCPL" ] ; then
2013
2014        eval comp_proc_mpi_loc=\${${comp}_PROC_MPI}
2015        eval comp_proc_omp_loc=\${${comp}_PROC_OMP}
2016        echo "${comp_proc_mpi_loc} ./${ExeNameOut}" >> run_file
2017      fi
2018    done
2019
2020# Then second loop on the components
2021
2022    for comp in ${config_ListOfComponents[*]} ; do
2023
2024      eval ExeNameIn=\${config_Executable_${comp}[0]}
2025      eval ExeNameOut=\${config_Executable_${comp}[1]}
2026
2027        # Only if we really have an executable for the component and not the coupler ie oasis:
2028      if ( [ "X${ExeNameOut}" != X\"\" ] && [ "X${comp}" != "XCPL" ] ) ; then
2029
2030        eval comp_proc_mpi_loc=\${${comp}_PROC_MPI}
2031        eval comp_proc_omp_loc=\${${comp}_PROC_OMP}
2032        echo "${comp_proc_mpi_loc} ./${ExeNameOut}" >> run_file
2033      fi
2034    done
2035
2036    EXECUTION="${HOST_MPIRUN_COMMAND} -f ./run_file"
2037
2038    IGCM_sys_Chmod u+x run_file
2039    if ( $DEBUG_sys ) ; then
2040      echo "run_file contains : "
2041      cat run_file
2042    fi
2043
2044  else # Only one executable. launch it.
2045
2046    #
2047    for comp in ${config_ListOfComponents[*]} ; do
2048
2049      # Only if we really have an executable for the component :
2050      eval ExeNameOut=\${config_Executable_${comp}[1]}
2051      if ( [ "X${ExeNameOut}" != X\"\" ] && [ "X${ExeNameOut}" != "Xinca.dat" ] ) ; then
2052
2053        echo "#!/bin/ksh" > script_${ExeNameOut}.ksh
2054        echo ""  >> script_${ExeNameOut}.ksh
2055        IGCM_sys_Chmod u+x script_${ExeNameOut}.ksh
2056
2057        if ( ${OK_PARA_OMP} ) ; then
2058          eval comp_proc_omp_loc=\${${comp}_PROC_OMP}
2059          echo ""  >> script_${ExeNameOut}.ksh
2060          echo "export KMP_STACKSIZE=3g"  >> script_${ExeNameOut}.ksh
2061          echo "export KMP_LIBRARY=turnaround"  >> script_${ExeNameOut}.ksh
2062          echo "export MKL_SERIAL=YES"  >> script_${ExeNameOut}.ksh
2063          echo "OMP_NUM_THREADS=${comp_proc_omp_loc}" >> script_${ExeNameOut}.ksh
2064        fi
2065
2066        if  ( ${OK_PARA_MPI} ) ; then
2067          eval comp_proc_mpi_loc=\${${comp}_PROC_MPI}
2068          # Default : ccc_mprun used if nb_proc gt 1
2069          # to have out/err per process on different files
2070          # echo "./${ExeNameOut} > out_${ExeNameOut}.out.\${SLURM_PROCID} 2>out_${ExeNameOut}.err.\${SLURM_PROCID}"  >> script_${ExeNameOut}.ksh
2071          echo "./${ExeNameOut}" >> script_${ExeNameOut}.ksh
2072          EXECUTION="${HOST_MPIRUN_COMMAND} -n ${comp_proc_mpi_loc} ./script_${ExeNameOut}.ksh"
2073        else
2074          # Default : ccc_mprun is NOT used if nb_proc eq 1
2075          # to have out/err per process on different files
2076          # echo "./${ExeNameOut} > out_${ExeNameOut}.out 2>out_${ExeNameOut}.err" >> script_${ExeNameOut}.ksh
2077          echo "./${ExeNameOut}" >> script_${ExeNameOut}.ksh
2078          EXECUTION="/usr/bin/time ./script_${ExeNameOut}.ksh"
2079        fi
2080
2081        IGCM_debug_Print 1 "sys Curie : script_${ExeNameOut}.ksh contains"
2082        cat script_${ExeNameOut}.ksh
2083
2084      fi
2085
2086    done
2087
2088  fi
2089
2090  IGCM_debug_Print 1 "sys Curie : execution command is "
2091  IGCM_debug_Print 1 "$EXECUTION"
2092
2093  IGCM_debug_PopStack "IGCM_sys_build_execution_scripts"
2094}
2095
2096############################################################
2097# Check of space available on temporary filesytems
2098function IGCM_sys_check_quota {
2099    IGCM_debug_PushStack "IGCM_sys_check_quota"
2100    if ( $DEBUG_sys ) ; then
2101        echo "IGCM_sys_check_quota"
2102    fi
2103    IGCM_debug_PopStack "IGCM_sys_check_quota"
2104}
2105
2106##############################################################
2107# NCO OPERATOR
2108
2109function IGCM_sys_ncap2 {
2110  IGCM_debug_PushStack "IGCM_sys_ncap2" -- $@
2111  if ( $DEBUG_sys ) ; then
2112    echo "IGCM_sys_ncap2 :" $@
2113  fi
2114
2115  typeset NB_ESSAI DELAI status i
2116  # number of tentative
2117  NB_ESSAI=3
2118  # time delay between tentative
2119  DELAI=2
2120
2121  i=0
2122  while [ $i -lt $NB_ESSAI ] ; do
2123    ncap2 "$@" > out_rsync 2>&1
2124    status=$?
2125    if [ ${status} -gt 0 ] ; then
2126      IGCM_debug_Print 2 "IGCM_sys_ncap2 : error code ${status}"
2127      cat out_rsync
2128      \rm out_rsync
2129      IGCM_debug_Print 2 "IGCM_sys_ncap2 : ${i}/${NB_ESSAI} sleep ${DELAI} seconds and try again."
2130      sleep $DELAI
2131    else
2132      \rm out_rsync
2133      break
2134    fi
2135    (( i = i + 1 ))
2136  done
2137
2138  if [ ${status} -gt 0 ] ; then
2139      echo "IGCM_sys_ncap2 : ncap2 error"
2140      IGCM_debug_Exit "ncap2"
2141  fi
2142
2143  IGCM_debug_PopStack "IGCM_sys_ncap2"
2144}
2145
2146function IGCM_sys_ncatted {
2147  IGCM_debug_PushStack "IGCM_sys_ncatted" -- $@
2148  if ( $DEBUG_sys ) ; then
2149    echo "IGCM_sys_ncatted :" $@
2150  fi
2151
2152  typeset NB_ESSAI DELAI status i
2153  # number of tentative
2154  NB_ESSAI=3
2155  # time delay between tentative
2156  DELAI=2
2157
2158  i=0
2159  while [ $i -lt $NB_ESSAI ] ; do
2160    ncatted "$@" > out_rsync 2>&1
2161    status=$?
2162    if [ ${status} -gt 0 ] ; then
2163      IGCM_debug_Print 2 "IGCM_sys_ncatted : error code ${status}"
2164      cat out_rsync
2165      \rm out_rsync
2166      IGCM_debug_Print 2 "IGCM_sys_ncatted : ${i}/${NB_ESSAI} sleep ${DELAI} seconds and try again."
2167      sleep $DELAI
2168    else
2169      \rm out_rsync
2170      break
2171    fi
2172    (( i = i + 1 ))
2173  done
2174
2175  if [ ${status} -gt 0 ] ; then
2176      echo "IGCM_sys_ncatted : ncatted error"
2177      IGCM_debug_Exit "ncatted"
2178  fi
2179
2180  IGCM_debug_PopStack "IGCM_sys_ncatted"
2181}
2182
2183function IGCM_sys_ncbo {
2184  IGCM_debug_PushStack "IGCM_sys_ncbo" -- $@
2185  if ( $DEBUG_sys ) ; then
2186    echo "IGCM_sys_ncbo :" $@
2187  fi
2188
2189  typeset NB_ESSAI DELAI status i
2190  # number of tentative
2191  NB_ESSAI=3
2192  # time delay between tentative
2193  DELAI=2
2194
2195  i=0
2196  while [ $i -lt $NB_ESSAI ] ; do
2197    ncbo $@ > out_rsync 2>&1
2198    status=$?
2199    if [ ${status} -gt 0 ] ; then
2200      IGCM_debug_Print 2 "IGCM_sys_ncbo : error code ${status}"
2201      cat out_rsync
2202      \rm out_rsync
2203      IGCM_debug_Print 2 "IGCM_sys_ncbo : ${i}/${NB_ESSAI} sleep ${DELAI} seconds and try again."
2204      sleep $DELAI
2205    else
2206      \rm out_rsync
2207      break
2208    fi
2209    (( i = i + 1 ))
2210  done
2211
2212  if [ ${status} -gt 0 ] ; then
2213      echo "IGCM_sys_ncbo : ncbo error"
2214      IGCM_debug_Exit "ncbo"
2215  fi
2216
2217  IGCM_debug_PopStack "IGCM_sys_ncbo"
2218}
2219
2220function IGCM_sys_ncdiff {
2221  IGCM_debug_PushStack "IGCM_sys_ncdiff" -- $@
2222  if ( $DEBUG_sys ) ; then
2223    echo "IGCM_sys_ncdiff :" $@
2224  fi
2225
2226  typeset NB_ESSAI DELAI status i
2227  # number of tentative
2228  NB_ESSAI=3
2229  # time delay between tentative
2230  DELAI=2
2231
2232  i=0
2233  while [ $i -lt $NB_ESSAI ] ; do
2234    ncdiff $@ > out_rsync 2>&1
2235    status=$?
2236    if [ ${status} -gt 0 ] ; then
2237      IGCM_debug_Print 2 "IGCM_sys_ncdiff : error code ${status}"
2238      cat out_rsync
2239      \rm out_rsync
2240      IGCM_debug_Print 2 "IGCM_sys_ncdiff : ${i}/${NB_ESSAI} sleep ${DELAI} seconds and try again."
2241      sleep $DELAI
2242    else
2243      \rm out_rsync
2244      break
2245    fi
2246    (( i = i + 1 ))
2247  done
2248
2249  if [ ${status} -gt 0 ] ; then
2250      echo "IGCM_sys_ncdiff : ncdiff error"
2251      IGCM_debug_Exit "ncdiff"
2252  fi
2253
2254  IGCM_debug_PopStack "IGCM_sys_ncdiff"
2255}
2256
2257function IGCM_sys_ncea {
2258  IGCM_debug_PushStack "IGCM_sys_ncea" -- $@
2259  if ( $DEBUG_sys ) ; then
2260    echo "IGCM_sys_ncea :" $@
2261  fi
2262
2263  typeset NB_ESSAI DELAI status i
2264  # number of tentative
2265  NB_ESSAI=3
2266  # time delay between tentative
2267  DELAI=2
2268
2269  i=0
2270  while [ $i -lt $NB_ESSAI ] ; do
2271    ncea $@ > out_rsync 2>&1
2272    status=$?
2273    if [ ${status} -gt 0 ] ; then
2274      IGCM_debug_Print 2 "IGCM_sys_ncea : error code ${status}"
2275      cat out_rsync
2276      \rm out_rsync
2277      IGCM_debug_Print 2 "IGCM_sys_ncea : ${i}/${NB_ESSAI} sleep ${DELAI} seconds and try again."
2278      sleep $DELAI
2279    else
2280      \rm out_rsync
2281      break
2282    fi
2283    (( i = i + 1 ))
2284  done
2285
2286  if [ ${status} -gt 0 ] ; then
2287      echo "IGCM_sys_ncea : ncea error"
2288      IGCM_debug_Exit "ncea"
2289  fi
2290
2291  IGCM_debug_PopStack "IGCM_sys_ncea"
2292}
2293
2294function IGCM_sys_ncecat {
2295  IGCM_debug_PushStack "IGCM_sys_ncecat" -- $@
2296  if ( $DEBUG_sys ) ; then
2297    echo "IGCM_sys_ncecat :" $@
2298  fi
2299
2300  typeset NB_ESSAI DELAI status i
2301  # number of tentative
2302  NB_ESSAI=3
2303  # time delay between tentative
2304  DELAI=2
2305
2306  i=0
2307  while [ $i -lt $NB_ESSAI ] ; do
2308    ncecat $@ > out_rsync 2>&1
2309    status=$?
2310    if [ ${status} -gt 0 ] ; then
2311      IGCM_debug_Print 2 "IGCM_sys_ncecat : error code ${status}"
2312      cat out_rsync
2313      \rm out_rsync
2314      IGCM_debug_Print 2 "IGCM_sys_ncecat : ${i}/${NB_ESSAI} sleep ${DELAI} seconds and try again."
2315      sleep $DELAI
2316    else
2317      \rm out_rsync
2318      break
2319    fi
2320    (( i = i + 1 ))
2321  done
2322
2323  if [ ${status} -gt 0 ] ; then
2324      echo "IGCM_sys_ncecat : ncecat error"
2325      IGCM_debug_Exit "ncecat"
2326  fi
2327
2328  IGCM_debug_PopStack "IGCM_sys_ncecat"
2329}
2330
2331function IGCM_sys_ncflint {
2332  IGCM_debug_PushStack "IGCM_sys_ncflint" -- $@
2333  if ( $DEBUG_sys ) ; then
2334    echo "IGCM_sys_ncflint :" $@
2335  fi
2336
2337  typeset NB_ESSAI DELAI status i
2338  # number of tentative
2339  NB_ESSAI=3
2340  # time delay between tentative
2341  DELAI=2
2342
2343  i=0
2344  while [ $i -lt $NB_ESSAI ] ; do
2345    ncflint $@ > out_rsync 2>&1
2346    status=$?
2347    if [ ${status} -gt 0 ] ; then
2348      IGCM_debug_Print 2 "IGCM_sys_ncflint : error code ${status}"
2349      cat out_rsync
2350      \rm out_rsync
2351      IGCM_debug_Print 2 "IGCM_sys_ncflint : ${i}/${NB_ESSAI} sleep ${DELAI} seconds and try again."
2352      sleep $DELAI
2353    else
2354      \rm out_rsync
2355      break
2356    fi
2357    (( i = i + 1 ))
2358  done
2359
2360  if [ ${status} -gt 0 ] ; then
2361      echo "IGCM_sys_ncflint : ncflint error"
2362      IGCM_debug_Exit "ncflint"
2363  fi
2364
2365  IGCM_debug_PopStack "IGCM_sys_ncflint"
2366}
2367
2368function IGCM_sys_ncks {
2369  IGCM_debug_PushStack "IGCM_sys_ncks" -- $@
2370  if ( $DEBUG_sys ) ; then
2371    echo "IGCM_sys_ncks :" $@
2372  fi
2373
2374  typeset NB_ESSAI DELAI status i
2375  # number of tentative
2376  NB_ESSAI=3
2377  # time delay between tentative
2378  DELAI=2
2379
2380  i=0
2381  while [ $i -lt $NB_ESSAI ] ; do
2382    ncks $@ > out_rsync 2>&1
2383    status=$?
2384    if [ ${status} -gt 0 ] ; then
2385      IGCM_debug_Print 2 "IGCM_sys_ncks : error code ${status}"
2386      cat out_rsync
2387      \rm out_rsync
2388      IGCM_debug_Print 2 "IGCM_sys_ncks : ${i}/${NB_ESSAI} sleep ${DELAI} seconds and try again."
2389      sleep $DELAI
2390    else
2391      \rm out_rsync
2392      break
2393    fi
2394    (( i = i + 1 ))
2395  done
2396
2397  if [ ${status} -gt 0 ] ; then
2398      echo "IGCM_sys_ncks : ncks error"
2399      IGCM_debug_Exit "ncks"
2400  fi
2401
2402  IGCM_debug_PopStack "IGCM_sys_ncks"
2403}
2404
2405function IGCM_sys_ncpdq {
2406  IGCM_debug_PushStack "IGCM_sys_ncpdq" -- $@
2407  if ( $DEBUG_sys ) ; then
2408    echo "IGCM_sys_ncpdq :" $@
2409  fi
2410
2411  typeset NB_ESSAI DELAI status i
2412  # number of tentative
2413  NB_ESSAI=3
2414  # time delay between tentative
2415  DELAI=2
2416
2417  i=0
2418  while [ $i -lt $NB_ESSAI ] ; do
2419    ncpdq $@ > out_rsync 2>&1
2420    status=$?
2421    if [ ${status} -gt 0 ] ; then
2422      IGCM_debug_Print 2 "IGCM_sys_ncpdq : error code ${status}"
2423      cat out_rsync
2424      \rm out_rsync
2425      IGCM_debug_Print 2 "IGCM_sys_ncpdq : ${i}/${NB_ESSAI} sleep ${DELAI} seconds and try again."
2426      sleep $DELAI
2427    else
2428      \rm out_rsync
2429      break
2430    fi
2431    (( i = i + 1 ))
2432  done
2433
2434  if [ ${status} -gt 0 ] ; then
2435      echo "IGCM_sys_ncpdq : ncpdq error"
2436      IGCM_debug_Exit "ncpdq"
2437  fi
2438
2439  IGCM_debug_PopStack "IGCM_sys_ncpdq"
2440}
2441
2442function IGCM_sys_ncra {
2443  IGCM_debug_PushStack "IGCM_sys_ncra" -- $@
2444  if ( $DEBUG_sys ) ; then
2445    echo "IGCM_sys_ncra :" $@
2446  fi
2447
2448  typeset NB_ESSAI DELAI status i
2449  # number of tentative
2450  NB_ESSAI=3
2451  # time delay between tentative
2452  DELAI=2
2453
2454  i=0
2455  while [ $i -lt $NB_ESSAI ] ; do
2456    ncra $@ > out_rsync 2>&1
2457    status=$?
2458    if [ ${status} -gt 0 ] ; then
2459      IGCM_debug_Print 2 "IGCM_sys_ncra : error code ${status}"
2460      cat out_rsync
2461      \rm out_rsync
2462      IGCM_debug_Print 2 "IGCM_sys_ncra : ${i}/${NB_ESSAI} sleep ${DELAI} seconds and try again."
2463      sleep $DELAI
2464    else
2465      \rm out_rsync
2466      break
2467    fi
2468    (( i = i + 1 ))
2469  done
2470
2471  if [ ${status} -gt 0 ] ; then
2472      echo "IGCM_sys_ncra : ncra error"
2473      IGCM_debug_Exit "ncra"
2474  fi
2475
2476  IGCM_debug_PopStack "IGCM_sys_ncra"
2477}
2478
2479function IGCM_sys_ncrcat {
2480  IGCM_debug_PushStack "IGCM_sys_ncrcat" -- $@
2481  if ( $DEBUG_sys ) ; then
2482    echo "IGCM_sys_ncrcat :" $@
2483  fi
2484
2485  typeset NB_ESSAI DELAI status i lastArg
2486  # number of tentative
2487  NB_ESSAI=3
2488  # time delay between tentative
2489  DELAI=2
2490
2491  i=0
2492  while [ $i -lt $NB_ESSAI ] ; do
2493    ncrcat $@ > out_rsync 2>&1
2494    status=$?
2495    if [ ${status} -gt 0 ] ; then
2496      IGCM_debug_Print 2 "IGCM_sys_ncrcat : error code ${status}"
2497      cat out_rsync
2498      \rm out_rsync
2499      IGCM_debug_Print 2 "IGCM_sys_ncrcat : ${i}/${NB_ESSAI} sleep ${DELAI} seconds and try again."
2500      sleep $DELAI
2501    elif [ ! "X$( grep "WARNING Intra-file non-monotonicity" out_rsync )" = "X" ] ; then
2502      IGCM_debug_Print 2 "IGCM_sys_ncrcat : WARNING Intra-file non-monotonicity"
2503      cat out_rsync
2504      # remove files having corrupted time axis
2505      eval lastArg=\${$#}
2506      IGCM_debug_Print 2 "IGCM_sys_ncrcat : Delete ${lastArg}"
2507      \rm ${lastArg}
2508      \rm out_rsync
2509      IGCM_debug_Print 2 "IGCM_sys_ncrcat : ${i}/${NB_ESSAI} sleep ${DELAI} seconds and try again."
2510      sleep $DELAI
2511    else
2512      \rm out_rsync
2513      break
2514    fi
2515    (( i = i + 1 ))
2516  done
2517
2518  if [ ${status} -gt 0 ] ; then
2519      echo "IGCM_sys_ncrcat : ncrcat error"
2520      #IGCM_debug_Exit "ncrcat"
2521  fi
2522
2523  IGCM_debug_PopStack "IGCM_sys_ncrcat"
2524}
2525
2526function IGCM_sys_ncrename {
2527  IGCM_debug_PushStack "IGCM_sys_ncrename" -- $@
2528  if ( $DEBUG_sys ) ; then
2529    echo "IGCM_sys_ncrename :" $@
2530  fi
2531
2532  typeset NB_ESSAI DELAI status i
2533  # number of tentative
2534  NB_ESSAI=3
2535  # time delay between tentative
2536  DELAI=2
2537
2538  i=0
2539  while [ $i -lt $NB_ESSAI ] ; do
2540    ncrename $@ > out_rsync 2>&1
2541    status=$?
2542    if [ ${status} -gt 0 ] ; then
2543      IGCM_debug_Print 2 "IGCM_sys_ncrename : error code ${status}"
2544      cat out_rsync
2545      \rm out_rsync
2546      IGCM_debug_Print 2 "IGCM_sys_ncrename : ${i}/${NB_ESSAI} sleep ${DELAI} seconds and try again."
2547      sleep $DELAI
2548    else
2549      \rm out_rsync
2550      break
2551    fi
2552    (( i = i + 1 ))
2553  done
2554
2555  if [ ${status} -gt 0 ] ; then
2556      echo "IGCM_sys_ncrename : ncrename error"
2557      IGCM_debug_Exit "ncrename"
2558  fi
2559
2560  IGCM_debug_PopStack "IGCM_sys_ncrename"
2561}
2562
2563function IGCM_sys_ncwa {
2564  IGCM_debug_PushStack "IGCM_sys_ncwa" -- $@
2565  if ( $DEBUG_sys ) ; then
2566    echo "IGCM_sys_ncwa :" $@
2567  fi
2568
2569  typeset NB_ESSAI DELAI status i
2570  # number of tentative
2571  NB_ESSAI=3
2572  # time delay between tentative
2573  DELAI=2
2574
2575  i=0
2576  while [ $i -lt $NB_ESSAI ] ; do
2577    ncwa $@ > out_rsync 2>&1
2578    status=$?
2579    if [ ${status} -gt 0 ] ; then
2580      IGCM_debug_Print 2 "IGCM_sys_ncwa : error code ${status}"
2581      cat out_rsync
2582      \rm out_rsync
2583      IGCM_debug_Print 2 "IGCM_sys_ncwa : ${i}/${NB_ESSAI} sleep ${DELAI} seconds and try again."
2584      sleep $DELAI
2585    else
2586      \rm out_rsync
2587      break
2588    fi
2589    (( i = i + 1 ))
2590  done
2591
2592  if [ ${status} -gt 0 ] ; then
2593      echo "IGCM_sys_ncwa : ncwa error"
2594      IGCM_debug_Exit "ncwa"
2595  fi
2596
2597  IGCM_debug_PopStack "IGCM_sys_ncwa"
2598}
2599
2600##############################################################
2601# CDO OPERATOR
2602
2603function IGCM_sys_cdo {
2604  IGCM_debug_PushStack "IGCM_sys_cdo" -- $@
2605  if ( $DEBUG_sys ) ; then
2606    echo "IGCM_sys_cdo :" $@
2607  fi
2608
2609  typeset status
2610
2611  \cdo $@ > out_rsync 2>&1
2612  status=$?
2613  if [ ${status} -gt 0 ] ; then
2614    echo "IGCM_sys_cdo : error code ${status}"
2615    cat out_rsync
2616    \rm out_rsync
2617    IGCM_debug_PopStack "IGCM_sys_cdo"
2618    return 1
2619  else
2620    IGCM_debug_PopStack "IGCM_sys_cdo"
2621    return 0
2622  fi
2623
2624  IGCM_debug_PopStack "IGCM_sys_cdo"
2625}
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