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source: trunk/libIGCM/libIGCM_sys/libIGCM_sys_curie.ksh @ 782

Last change on this file since 782 was 782, checked in by labetoulle, 11 years ago
Move REBUILD_DIR initialization into IGCM_config_CommonConfiguration function ; Delete not used variable R_OUT_POST.
Property svn:keywords set to `Revision Author Date`
File size: 78.3 KB

Line
1	#!/bin/ksh
2
3	#**************************************************************
4	# Author: Sebastien Denvil, Martial Mancip, Arnaud Caubel
5	# Contact: Arnaud.Caubel__at__lsce.ipsl.fr
6	# $Revision:: $ Revision of last commit
7	# $Author:: $ Author of last commit
8	# $Date:: $ Date of last commit
9	# IPSL (2006)
10	# This software is governed by the CeCILL licence see libIGCM/libIGCM_CeCILL.LIC
11	#
12	#**************************************************************
13
14	#=========================================================
15	# The documentation of this file can be automatically generated
16	# if you use the prefix #D- for comments to be extracted.
17	# Extract with command: cat lib* \| grep "^#D-" \| cut -c "4-"
18	#=========================================================
19
20	#D-#==================================================
21	#D-LibIGCM_sys for Curie
22	#D-#==================================================
23	#D-
24	#D- This ksh library if a layer under some usefull
25	#D-environment variables and shell commands.
26	#D-All those definitions depend on host particularities.
27	#D-It manages a stack mechanism and test validity of operations.
28	#D-All function described bellow must be prefixed by IGCM_sys.
29
30	#====================================================
31	# libIGCM_sys PARAMETERS
32	#====================================================
33
34	#====================================================
35	# set DEBUG_sys to true to output calls of function
36	typeset -r DEBUG_sys=${DEBUG_sys:=true}
37
38	#====================================================
39	# Turn in dry run mode ? (sys_Put_Rest, sys_Put_Out, sys_Get)
40	typeset -r DRYRUN=${DRYRUN:=0}
41
42	# YOU MUST COMPILE YOUR EXE FILES FOR DRYRUN MODE !
43	# -------------------------------------------------------------------------------------
44	# \| DRYRUN= \| Date computations, \| sys_Get \| Exe \| sys_Put_Out; sys_Put_Rest \|
45	# \| \| Cp/Exe param files \| \| Chmod \| \|
46	# \| \| Qsub \| \| \| \|
47	# -------------------------------------------------------------------------------------
48	# \| 0 \| yes \| yes \| yes \| yes \|
49	# -------------------------------------------------------------------------------------
50	# \| 1 \| yes \| yes \| yes \| no \|
51	# -------------------------------------------------------------------------------------
52	# \| 2 \| yes \| yes \| no \| no \|
53	# -------------------------------------------------------------------------------------
54	# \| 3 \| yes \| no \| no \| no \|
55	# -------------------------------------------------------------------------------------
56
57	#=====================================================
58	# Global Variables :
59	#=====================================================
60	# Language : "fr" or "en"
61	typeset -r MYLANG="fr"
62
63	#=====================================================
64	# Host and user names
65	# $hostname ou hostname
66	typeset HOST=${HOST:=$( hostname )}
67	# $username ou whoami
68	typeset LOGIN=${LOGIN:=$( whoami )}
69	# $hostname of the MASTER job
70	typeset MASTER=curie
71
72	#D-
73	#D-#==================================================
74	#D-Program used in libIGCM
75	#D-#==================================================
76
77	# Submit command
78	typeset SUBMIT=${SUBMIT:=ccc_msub}
79	# rsync with path
80	typeset -r RSYNC=/usr/bin/rsync
81	# RSYNC_opt args to rsync
82	typeset -r RSYNC_opt="-va"
83	# ie storage filesystem
84	typeset -r STOREHOST=${MASTER}
85
86	#====================================================
87	# Source default environment
88	#====================================================
89	##. /etc/profile
90
91	#====================================================
92	# Set environment tools (ferret, nco, cdo)
93	#====================================================
94	if [ X${TaskType} = Xcomputing ] ; then
95	. /ccc/cont003/home/dsm/p86ipsl/.atlas_env_calcul_curie_ksh
96	export PATH=${PATH}:/ccc/cont003/home/dsm/p86ipsl/AddNoise/src_X64/bin
97	else
98	. /ccc/cont003/home/dsm/p86ipsl/.atlas_env_post_curie_ksh
99	fi
100
101	#====================================================
102	# Specific for ocean additionnal diagnostic
103	export FER_GO="$FER_GO /home/cont003/p86denv/IGCM_POST_UTIL/JNL /home/cont003/p86denv/GRAF /home/cont003/p86denv/GRAF/GO"
104	export FER_PALETTE="$FER_PALETTE /home/cont003/p86denv/GRAF/PALET"
105
106	#====================================================
107	# Host specific DIRECTORIES
108	#====================================================
109
110	# ============ CESIUM START ============ #
111
112	#====================================================
113	#- Mirror libIGCM from titane to cesium if needed
114	#ROOTSYS=$( echo ${libIGCM} \| gawk -F"/" '{print $3}' )
115	#if [ ! ${ROOTSYS} = "home" ] ; then
116	# typeset -r MirrorlibIGCM=${MirrorlibIGCM:=true}
117	#else
118	# typeset -r MirrorlibIGCM=${MirrorlibIGCM:=false}
119	#fi
120
121	#====================================================
122	#- libIGCM_POST
123	#if ( ${MirrorlibIGCM} ) ; then
124	# PATHlibIGCM=$( echo ${libIGCM} \| gawk -F"${LOGIN}/" '{print $2}' \| sed -e "s&/libIGCM&&" )
125	# typeset -r libIGCM_POST=${HOME}/MIRROR/${PATHlibIGCM}/libIGCM
126	#else
127	# typeset -r libIGCM_POST=${libIGCM}
128	#fi
129
130	# ============ CESIUM END ============ #
131
132	#====================================================
133	#- MirrorlibIGCM for frontend
134	typeset -r MirrorlibIGCM=${MirrorlibIGCM:=false}
135
136	#====================================================
137	#- libIGCM_POST for frontend
138	typeset -r libIGCM_POST=${libIGCM}
139
140	#====================================================
141	#- R_EXE (==> BIN_DIR = ${MODIPSL}/bin )
142	typeset -r R_EXE="${MODIPSL}/bin"
143
144	#====================================================
145	#- SUBMIT_DIR : submission dir
146	typeset SUBMIT_DIR=${SUBMIT_DIR:=${BRIDGE_MSUB_PWD}}
147
148	#====================================================
149	#- IN
150	typeset -r R_IN=${R_IN:=/ccc/work/cont003/dsm/p86ipsl/IGCM}
151	typeset -r R_IN_ECMWF=${R_IN_ECMWF:=/ccc/work/cont003/dsm/p24data}
152
153	#====================================================
154	#- ARCHIVE (dedicated to large files)
155	typeset ARCHIVE=${CCCSTOREDIR}
156
157	#====================================================
158	#- STORAGE (dedicated to small/medium files)
159	typeset STORAGE=${CCCWORKDIR}
160
161	#====================================================
162	#- R_OUT
163	typeset R_OUT=${ARCHIVE}/IGCM_OUT
164
165	#====================================================
166	#- R_FIG (hosting figures : monitoring and atlas, and/or small files)
167	typeset R_FIG=${STORAGE}/IGCM_OUT
168
169	#====================================================
170	#- R_BUF (ONLY FOR double copy an scratch)
171	typeset -r R_BUF=${SCRATCHDIR}/IGCM_OUT
172
173	#====================================================
174	#- BIG_DIR : BIG_DIR to store files waiting for rebuild
175	typeset -r BIG_DIR=${BIG_DIR:=${SCRATCHDIR}/REBUILD}
176
177	#====================================================
178	#- RUN_DIR_PATH : Temporary working directory (=> TMP)
179	if [ X${TaskType} = Xcomputing ] ; then
180	typeset -r RUN_DIR_PATH=${RUN_DIR_PATH:=${SCRATCHDIR}/RUN_DIR/${BRIDGE_MSUB_JOBID}}
181	else
182	typeset -r RUN_DIR_PATH=${RUN_DIR_PATH:=${SCRATCHDIR}/TMPDIR_IGCM/${BRIDGE_MSUB_JOBID}}
183	fi
184
185	#====================================================
186	#- HOST_MPIRUN_COMMAND
187	typeset -r HOST_MPIRUN_COMMAND=${HOST_MPIRUN_COMMAND:="/usr/bin/time ccc_mprun"}
188
189	#====================================================
190	#- Max number of arguments passed to nco operator or demigration command
191	UNIX_MAX_LIMIT=360
192
193	#====================================================
194	#- set PackDefault true on curie
195	PackDefault=true
196
197	#====================================================
198	#- Number of core per node (max number of OpenMP task)
199	NUM_COREPERNODE=8
200
201	#====================================================
202	#- Default number of MPI task for IPSL coupled model
203	#- required for backward compatibility
204	#-
205	DEFAULT_NUM_PROC_OCE=5
206	DEFAULT_NUM_PROC_CPL=1
207	(( DEFAULT_NUM_PROC_ATM = BATCH_NUM_PROC_TOT - DEFAULT_NUM_PROC_OCE - DEFAULT_NUM_PROC_CPL ))
208	DEFAULT_NUM_PROC_TOTAL=${BATCH_NUM_PROC_TOT}
209
210	#D-#==================================================
211	#D-function IGCM_sys_ChangeArchive
212	#D-* Purpose: if SpaceName=TEST everything is stored on SCRATCHDIR
213	#D-* Examples:
214	#D-
215	function IGCM_sys_ChangeArchive {
216	IGCM_debug_PushStack "IGCM_sys_ChangeArchive"
217
218	R_OUT=${SCRATCHDIR}/IGCM_OUT
219	R_FIG=${SCRATCHDIR}/IGCM_OUT
220
221	IGCM_debug_Print 1 "R_OUT has been redefined = ${R_OUT}"
222	IGCM_debug_Print 1 "R_FIG has been redefined = ${R_FIG}"
223
224	IGCM_debug_PopStack "IGCM_sys_ChangeArchive"
225	}
226
227	#D-#==================================================
228	#D-function IGCM_sys_RshMaster
229	#D-* Purpose: Connection to frontend machine.
230	#D-* Examples:
231	#D-
232	function IGCM_sys_RshMaster {
233	IGCM_debug_PushStack "IGCM_sys_RshMaster" $@
234	/bin/ksh <<-EOF
235	export libIGCM=${libIGCM}
236	export DEBUG_debug=${DEBUG_debug}
237	. ${libIGCM}/libIGCM_debug/libIGCM_debug.ksh
238	. ${libIGCM}/libIGCM_card/libIGCM_card.ksh
239	${@}
240	EOF
241	if [ $? -gt 0 ] ; then
242	echo "IGCM_sys_RshMaster : erreur."
243	IGCM_debug_Exit "IGCM_sys_RshMaster"
244	fi
245	IGCM_debug_PopStack "IGCM_sys_RshMaster"
246	}
247
248	#D-#==================================================
249	#D-function IGCM_sys_RshArchive
250	#D-* Purpose: Archive rsh command
251	#D-* Examples:
252	#D-
253	function IGCM_sys_RshArchive {
254	IGCM_debug_PushStack "IGCM_sys_RshArchive" $@
255	/bin/ksh <<-EOF
256	${@}
257	EOF
258	if [ $? -gt 0 ] ; then
259	echo "IGCM_sys_RshArchive : erreur."
260	IGCM_debug_Exit "IGCM_sys_RshArchive"
261	fi
262	IGCM_debug_PopStack "IGCM_sys_RshArchive"
263	}
264
265	#D-#==================================================
266	#D-function IGCM_sys_RshPost
267	#D-* Purpose: Post-process rsh command
268	#D-* Examples:
269	#D-
270	function IGCM_sys_RshPost {
271	IGCM_debug_PushStack "IGCM_sys_RshPost" $@
272	if ( $DEBUG_sys ) ; then
273	echo "IGCM_sys_RshPost :" $@
274	fi
275
276	#echo cat tmp_IGCM_sys_RshPost_$$ INITIAL
277	#cat tmp_IGCM_sys_RshPost_$$
278	# keep standard input (stdin) for the loop onto temporary file
279	cat >tmp_IGCM_sys_RshPost_$$
280
281	# ============ FRONTEND START ============ #
282
283	/bin/ksh <tmp_IGCM_sys_RshPost_$$
284	if [ $? -gt 0 ] ; then
285	echo "IGCM_sys_RshPost : erreur."
286	IGCM_debug_Exit "IGCM_sys_RshPost"
287	fi
288	# delete temporary file
289	\rm tmp_IGCM_sys_RshPost_$$
290
291	# ============ FRONTEND END ============ #
292
293	# ============ CESIUM START ============ #
294	# typeset NB_ESSAI DELAI status i
295	# if [ "X$( grep rebuild_from tmp_IGCM_sys_RshPost_$$ )" != "X" ] ; then
296	# #little hack so that rebuild submission is done on titane not an cesium
297	#
298	# libIGCM_POST_sed=$( echo $libIGCM_POST \| sed 's/\//\\\//g' )
299	# POST_DIR_sed=$( echo ${POST_DIR} \| sed 's/\//\\\//g' )
300	# sed "s/IGCM_sys_QsubPost/IGCM_sys_Qsub/g" tmp_IGCM_sys_RshPost_$$ > tmp.txt
301	# sed "s/ rebuild_fromWorkdir/ ${libIGCM_POST_sed}\/rebuild_fromWorkdir.job/g" tmp.txt > tmp_IGCM_sys_RshPost_$$
302	# sed "s/ rebuild_fromArchive/ ${libIGCM_POST_sed}\/rebuild_fromArchive.job/g" tmp_IGCM_sys_RshPost_$$ > tmp.txt
303	# sed "s/Script_Post_Output=/Script_Output=${POST_DIR_sed}\//g" tmp.txt > tmp_IGCM_sys_RshPost_$$
304	# \mv tmp.txt tmp_IGCM_sys_RshPost_$$
305	#
306	# echo cat tmp_IGCM_sys_RshPost_$$ AFTER
307	# cat tmp_IGCM_sys_RshPost_$$
308	#
309	# /bin/ksh <tmp_IGCM_sys_RshPost_$$
310	# if [ $? -gt 0 ] ; then
311	# echo "IGCM_sys_RshPost : erreur."
312	# IGCM_debug_Exit "IGCM_sys_RshPost"
313	# fi
314	# # delete temporary file
315	# \rm tmp_IGCM_sys_RshPost_$$
316	#
317	# else
318	# # number of tentative
319	# NB_ESSAI=10
320	# # time delay between tentative
321	# DELAI=10
322	# i=0
323	# while [ $i -ne $NB_ESSAI ] ; do
324	# ssh -t titane996 ssh cesium /bin/ksh <tmp_IGCM_sys_RshPost_$$
325	# status=$?
326	# if [ ${status} -ne 0 ];
327	# then
328	# sleep $DELAI
329	# else
330	# break
331	# fi
332	# let i=$i+1
333	# done
334	# # delete temporary file
335	# \rm tmp_IGCM_sys_RshPost_$$
336	#
337	# if [ ${status} -gt 0 ] ; then
338	# echo "IGCM_sys_RshPost : erreur."
339	# IGCM_debug_Exit "IGCM_sys_RshPost"
340	# fi
341	# fi
342
343	# ============ CESIUM END ============ #
344
345	IGCM_debug_PopStack "IGCM_sys_RshPost"
346	}
347
348	#D-#==================================================
349	#D-function IGCM_sys_SendMail
350	#D-* Purpose: Send mail when simulation is over
351	#D-* Examples:
352	#D-
353	function IGCM_sys_SendMail {
354	IGCM_debug_PushStack "IGCM_sys_SendMail" $@
355	if ( $DEBUG_sys ) ; then
356	echo "IGCM_sys_SendMail :" $@
357	fi
358
359	if ( ${ExitFlag} ) ; then
360	status=failed
361	else
362	status=completed
363	fi
364
365	cat << END_MAIL > job_end.mail
366	Dear ${LOGIN},
367
368	Simulation ${config_UserChoices_JobName} is ${status} on supercomputer `hostname`.
369	Job started : ${DateBegin}
370	Job ended : ${DateEnd}
371	Output files are available in ${R_SAVE}
372	Files to be rebuild are temporarily available in ${REBUILD_DIR}
373	Pre-packed files are temporarily available in ${R_BUFR}
374	Script files, Script Outputs and Debug files (if necessary) are available in ${SUBMIT_DIR}
375	END_MAIL
376
377	if [ ! -z ${config_UserChoices_MailName} ] ; then
378	mail -s "${config_UserChoices_JobName} ${status}" ${config_UserChoices_MailName} < job_end.mail
379	elif [ -f ~/.forward ] ; then
380	mail -s "${config_UserChoices_JobName} ${status}" $( cat ~/.forward ) < job_end.mail
381	fi
382	sleep 10
383	rm -f job_end.mail
384
385	if [ $? -gt 0 ] ; then
386	echo "IGCM_sys_SendMail : erreur."
387	IGCM_debug_Exit "IGCM_sys_SendMail"
388	fi
389	IGCM_debug_PopStack "IGCM_sys_SendMail"
390	}
391
392	#D-#==================================================
393	#D-function IGCM_sys_Mkdir
394	#D-* Purpose: Master locale mkdir command
395	#D-* Examples:
396	#D-
397	function IGCM_sys_Mkdir {
398	IGCM_debug_PushStack "IGCM_sys_Mkdir" $@
399	if ( $DEBUG_sys ) ; then
400	echo "IGCM_sys_Mkdir :" $@
401	fi
402	if [ ! -d ${1} ]; then
403	\mkdir -p $1
404	if [ $? -gt 0 ] ; then
405	echo "IGCM_sys_Mkdir : erreur."
406	IGCM_debug_Exit "IGCM_sys_Mkdir"
407	fi
408	fi
409	# vérification :
410	if [ ! -d ${1} ] ; then
411	echo "IGCM_sys_Mkdir : erreur."
412	IGCM_debug_Exit "IGCM_sys_Mkdir"
413	fi
414	IGCM_debug_PopStack "IGCM_sys_Mkdir"
415	}
416
417	#D-#==================================================
418	#D-function IGCM_sys_MkdirArchive
419	#D-* Purpose: Mkdir on Archive
420	#D-* Examples:
421	#D-
422	function IGCM_sys_MkdirArchive {
423	IGCM_debug_PushStack "IGCM_sys_MkdirArchive" $@
424	if ( $DEBUG_sys ) ; then
425	echo "IGCM_sys_MkdirArchive :" $@
426	fi
427	#- creation de repertoire sur le serveur fichier
428	if [ ! -d ${1} ]; then
429	\mkdir -p $1
430	if [ $? -gt 0 ] ; then
431	echo "IGCM_sys_MkdirArchive : erreur."
432	IGCM_debug_Exit "IGCM_sys_MkdirArchive"
433	fi
434	fi
435	IGCM_debug_PopStack "IGCM_sys_MkdirArchive"
436	}
437
438	#D-#==================================================
439	#D-function IGCM_sys_MkdirWork
440	#D-* Purpose: Mkdir on Work
441	#D-* Examples:
442	#D-
443	function IGCM_sys_MkdirWork {
444	IGCM_debug_PushStack "IGCM_sys_MkdirWork" $@
445	if ( $DEBUG_sys ) ; then
446	echo "IGCM_sys_MkdirWork :" $@
447	fi
448	#- creation de repertoire sur le serveur fichier
449	if [ ! -d ${1} ]; then
450	\mkdir -p $1
451	if [ $? -gt 0 ] ; then
452	echo "IGCM_sys_MkdirWork : erreur."
453	IGCM_debug_Exit "IGCM_sys_MkdirWork"
454	fi
455	fi
456	IGCM_debug_PopStack "IGCM_sys_MkdirWork"
457	}
458
459	#D-#==================================================
460	#D-function IGCM_sys_Cd
461	#D-* Purpose: master cd command
462	#D-* Examples:
463	#D-
464	function IGCM_sys_Cd {
465	IGCM_debug_PushStack "IGCM_sys_Cd" $@
466	if ( $DEBUG_sys ) ; then
467	echo "IGCM_sys_Cd :" $@
468	fi
469	\cd $1
470	if [ $? -gt 0 ] ; then
471	echo "IGCM_sys_Cd : erreur."
472	IGCM_debug_Exit "IGCM_sys_Cd"
473	fi
474	IGCM_debug_PopStack "IGCM_sys_Cd"
475	}
476
477	#D-#==================================================
478	#D-function IGCM_sys_Chmod
479	#D-* Purpose: Chmod
480	#D-* Examples:
481	#D-
482	function IGCM_sys_Chmod {
483	IGCM_debug_PushStack "IGCM_sys_Chmod" -- $@
484	if ( $DEBUG_sys ) ; then
485	echo "IGCM_sys_Chmod :" $@
486	fi
487	if [ $DRYRUN -le 1 ]; then
488	\chmod $@
489	if [ $? -gt 0 ] ; then
490	echo "IGCM_sys_Chmod : erreur."
491	IGCM_debug_Exit "IGCM_sys_Chmod"
492	fi
493	else
494	( ${DEBUG_debug} ) && echo "DRYRUN mode = " $DRYRUN >> stack
495	fi
496	IGCM_debug_PopStack "IGCM_sys_Chmod"
497	}
498
499	#D-#==================================================
500	#D-function IGCM_sys_FileSize
501	#D-* Purpose: Filesize
502	#D-* Examples:
503	#D-
504	function IGCM_sys_FileSize {
505	IGCM_debug_PushStack "IGCM_sys_FileSize" $@
506
507	typeset sizeF
508	set +A sizeF -- $( ls -la ${1} )
509	if [ $? -gt 0 ] ; then
510	IGCM_debug_Exit "IGCM_sys_FileSize"
511	fi
512	eval ${2}=${sizeF[4]}
513
514	IGCM_debug_PopStack "IGCM_sys_FileSize"
515	}
516
517	#D-#==================================================
518	#D-function IGCM_sys_TestDir
519	#D-* Purpose: Test Directory that must exists
520	#D-* Examples:
521	#D-
522	function IGCM_sys_TestDir {
523	IGCM_debug_PushStack "IGCM_sys_TestDir" $@
524	if ( $DEBUG_sys ) ; then
525	echo "IGCM_sys_TestDir :" $@
526	fi
527	typeset ExistFlag
528	ExistFlag=$( [ -d $1 ] && echo 0 \|\| echo 1 )
529	IGCM_debug_PopStack "IGCM_sys_TestDir"
530
531	return ${ExistFlag}
532	}
533
534	#D-#==================================================
535	#D-function IGCM_sys_TestDirArchive
536	#D-* Purpose: Test Directory that must exists on Archive
537	#D-* Examples:
538	#D-
539	function IGCM_sys_TestDirArchive {
540	IGCM_debug_PushStack "IGCM_sys_TestDirArchive" $@
541	if ( $DEBUG_sys ) ; then
542	echo "IGCM_sys_TestDirArchive :" $@
543	fi
544	typeset ExistFlag
545	ExistFlag=$( [ -d $1 ] && echo 0 \|\| echo 1 )
546	IGCM_debug_PopStack "IGCM_sys_TestDirArchive"
547
548	return ${ExistFlag}
549	}
550
551	#D-#==================================================
552	#D-function IGCM_sys_IsFileArchived
553	#D-* Purpose: Test file that must NOT EXISTS on Archive
554	#D-* Examples:
555	#D-
556	function IGCM_sys_IsFileArchived {
557	IGCM_debug_PushStack "IGCM_sys_IsFileArchived" $@
558	if ( $DEBUG_sys ) ; then
559	echo "IGCM_sys_IsFileArchived :" $@
560	fi
561	typeset IsArchivedFlag
562	IsArchivedFlag=$( [ X$( echo $1 \| grep ^\/ccc\/store ) != X ] && echo 0 \|\| echo 1 )
563	IGCM_debug_PopStack "IGCM_sys_IsFileArchived"
564
565	return ${IsArchivedFlag}
566	}
567
568	#D-#==================================================
569	#D-function IGCM_sys_TestFileArchive
570	#D-* Purpose: Test file that must NOT EXISTS on Archive
571	#D-* Examples:
572	#D-
573	function IGCM_sys_TestFileArchive {
574	IGCM_debug_PushStack "IGCM_sys_TestFileArchive" $@
575	typeset ExistFlag
576	ExistFlag=$( [ -f $1 ] && echo 0 \|\| echo 1 )
577	IGCM_debug_PopStack "IGCM_sys_TestFileArchive"
578
579	return ${ExistFlag}
580	}
581
582	#D-#==================================================
583	#D-function IGCM_sys_TestFileBuffer
584	#D-* Purpose: Test file that must NOT EXISTS on Buffer
585	#D-* Examples:
586	#D-
587	function IGCM_sys_TestFileBuffer {
588	IGCM_debug_PushStack "IGCM_sys_TestFileBuffer" $@
589	typeset ExistFlag
590	ExistFlag=$( [ -f $1 ] && echo 0 \|\| echo 1 )
591	IGCM_debug_PopStack "IGCM_sys_TestFileBuffer"
592
593	return ${ExistFlag}
594	}
595
596	#D-#==================================================
597	#D-function IGCM_sys_CountFileArchive
598	#D-* Purpose: Count files on Archive filesystem
599	#D-* Examples:
600	#D-
601	function IGCM_sys_CountFileArchive {
602	IGCM_debug_PushStack "IGCM_sys_CountFileArchive" $@
603	ls ${@} 2>/dev/null \| wc -l
604	if [ $? -gt 0 ] ; then
605	echo "IGCM_sys_CountFileArchive : erreur."
606	fi
607	IGCM_debug_PopStack "IGCM_sys_CountFileArchive"
608	}
609
610	#D-#==================================================
611	#D-function IGCM_sys_CountFileBuffer
612	#D-* Purpose: Count files on Scratch filesystem
613	#D-* Examples:
614	#D-
615	function IGCM_sys_CountFileBuffer {
616	IGCM_debug_PushStack "IGCM_sys_CountFileBuffer" $@
617	ls ${@} 2>/dev/null \| wc -l
618	if [ $? -gt 0 ] ; then
619	echo "IGCM_sys_CountFileBuffer : erreur."
620	fi
621	IGCM_debug_PopStack "IGCM_sys_CountFileBuffer"
622	}
623
624	#D-#==================================================
625	#D-function IGCM_sys_Tree
626	#D-* Purpose: Tree directories with files on ${ARCHIVE}
627	#D-* Examples: IGCM_sys_Tree ${R_IN} ${R_OUT}
628	#D-
629	function IGCM_sys_Tree {
630	IGCM_debug_PushStack "IGCM_sys_Tree" $@
631	if ( $DEBUG_sys ) ; then
632	echo "IGCM_sys_Tree :" $@
633	fi
634
635	\ls -lR ${@}
636
637	IGCM_debug_PopStack "IGCM_sys_Tree"
638	}
639
640	#D-#==================================================
641	#D-function IGCM_sys_Tar
642	#D-* Purpose: master tar command
643	#D-* Examples:
644	#D-
645	function IGCM_sys_Tar {
646	IGCM_debug_PushStack "IGCM_sys_Tar" $@
647	if ( $DEBUG_sys ) ; then
648	echo "IGCM_sys_Tar :" $@
649	fi
650	\tar cf $@
651	if [ $? -gt 0 ] ; then
652	echo "IGCM_sys_Tar : erreur."
653	IGCM_debug_Exit "IGCM_sys_Tar"
654	fi
655	IGCM_debug_PopStack "IGCM_sys_Tar"
656	}
657
658	#D-#==================================================
659	#D-function IGCM_sys_UnTar
660	#D-* Purpose: master un-tar command
661	#D-* Examples:
662	#D-
663	function IGCM_sys_UnTar {
664	IGCM_debug_PushStack "IGCM_sys_UnTar" $@
665	if ( $DEBUG_sys ) ; then
666	echo "IGCM_sys_UnTar :" $@
667	fi
668	\tar xvf $1
669	if [ $? -gt 0 ] ; then
670	echo "IGCM_sys_UnTar : erreur."
671	IGCM_debug_Exit "IGCM_sys_UnTar"
672	fi
673	IGCM_debug_PopStack "IGCM_sys_UnTar"
674	}
675
676	#D-#==================================================
677	#D-function IGCM_sys_Qsub
678	#D-* Purpose: Qsub new job
679	#D-* Examples:
680	#D-
681	function IGCM_sys_Qsub {
682	IGCM_debug_PushStack "IGCM_sys_Qsub" $@
683	if ( $DEBUG_sys ) ; then
684	echo "IGCM_sys_Qsub :" $@
685	fi
686	typeset options
687	if [ ${config_UserChoices_JobName}.${CumulPeriod} = "." ] ; then
688	options=" -o ${Script_Output} -e ${Script_Output}"
689	else
690	options=" -o ${Script_Output} -e ${Script_Output} -r ${config_UserChoices_JobName}.${CumulPeriod}"
691	fi
692
693	/usr/bin/ccc_msub ${options} < $1
694	if [ $? -gt 0 ] ; then
695	echo "IGCM_sys_Qsub : erreur ${options} $1"
696	IGCM_debug_Exit "IGCM_sys_Qsub"
697	fi
698	IGCM_debug_PopStack "IGCM_sys_Qsub"
699	}
700
701	#D-#==================================================
702	#D-function IGCM_sys_QsubPost
703	#D-* Purpose: Qsub new job on scalaire
704	#D-* Examples:
705	#D-
706	function IGCM_sys_QsubPost {
707	IGCM_debug_PushStack "IGCM_sys_QsubPost" $@
708	if ( $DEBUG_sys ) ; then
709	echo "IGCM_sys_QsubPost :" $@
710	fi
711	MY_PROJECT=$(echo ${BRIDGE_MSUB_PROJECT} \| cut -d@ -f1 )
712	/usr/bin/ccc_msub -Q normal -A ${MY_PROJECT} -o ${POST_DIR}/${Script_Post_Output}.out -e ${POST_DIR}/${Script_Post_Output}.out ${libIGCM_POST}/$1.job
713	if [ $? -gt 0 ] ; then
714	echo "IGCM_sys_QsubPost : erreur " $@
715	IGCM_debug_Exit "IGCM_sys_QsubPost"
716	fi
717	IGCM_debug_PopStack "IGCM_sys_QsubPost"
718	}
719
720	#D-*************************
721	#D- File transfer functions
722	#D-*************************
723	#D-
724
725	#D-#==================================================
726	#D-function IGCM_sys_Rsync_out
727	#D-* Purpose: treat return val of rsync
728	#D-* Examples: IGCM_sys_Rsync_out out_RET_rsync
729	#D- Error values and explanations can depend on your system version.
730	function IGCM_sys_Rsync_out {
731	status=$1
732	if [ ! $status ] ; then
733	echo "rsync error !"
734	fi
735
736	if [ $MYLANG = "fr" ]; then
737	case $status in
738	0) return ;;
739	1) echo "Erreur de rsync ; RERR_SYNTAX : "
740	echo "Erreur de syntaxe ou d'utilisation."
741	return;;
742	2) echo "Erreur de rsync ; RERR_PROTOCOL : "
743	echo "Incompatibilité de protocole."
744	return;;
745	3) echo "Erreur de rsync ; RERR_FILESELECT 3"
746	echo "Erreurs lors de la sélection des fichiers d'entrée sortie et"
747	echo "répertoires"
748	return;;
749	4) echo "Erreur de rsync ; RERR_UNSUPPORTED"
750	echo "Action demandée non supportée : une tentative de manipulation de"
751	echo "fichiers 64-bits sur une plate-forme qui ne les supporte pas a"
752	echo "été faite ; ou une option qui est supportée par le client mais"
753	echo "pas par le serveur a été spécifiée."
754	return;;
755	10) echo "Erreur de rsync ; RERR_SOCKETIO"
756	echo "Erreur dans le socket d'entrée sortie"
757	return;;
758	11) echo "Erreur de rsync ; RERR_FILEIO"
759	echo "Erreur d'entrée sortie fichier"
760	return;;
761	12) echo "Erreur de rsync ; RERR_STREAMIO"
762	echo "Erreur dans flux de donnée du protocole rsync"
763	return;;
764	13) echo "Erreur de rsync ; RERR_MESSAGEIO"
765	echo "Erreur avec les diagnostics du programme"
766	return;;
767	14) echo "Erreur de rsync ; RERR_IPC"
768	echo "Erreur dans le code IPC"
769	return;;
770	20) echo "Erreur de rsync ; RERR_SIGNAL"
771	echo "SIGUSR1 ou SIGINT reçu"
772	return;;
773	21) echo "Erreur de rsync ; RERR_WAITCHILD"
774	echo "Une erreur retournée par waitpid()"
775	return;;
776	22) echo "Erreur de rsync ; RERR_MALLOC"
777	echo "Erreur lors de l'allocation des tampons de mémoire de coeur"
778	return;;
779	23) echo ""
780	echo "Erreur fichier inexistant"
781	return;;
782	30) echo "Erreur de rsync ; RERR_TIMEOUT"
783	echo "Temps d'attente écoulé dans l'envoi/réception de données"
784	return;;
785	*) echo "Erreur de rsync : code de retour de rsync inconnu :" $status
786	return;;
787	esac
788	elif [ $MYLANG = "en" ] ; then
789	case $status in
790	0) return;;
791	1) echo "rsync error : Syntax or usage error "
792	return;;
793	2) echo "rsync error : Protocol incompatibility "
794	return;;
795	3) echo "rsync error : Errors selecting input/output files, dirs"
796	return;;
797	4) echo "rsync error : Requested action not supported: an attempt"
798	echo "was made to manipulate 64-bit files on a platform that cannot support"
799	echo "them; or an option was specified that is supported by the client and"
800	echo "not by the server."
801	return;;
802	5) echo "rsync error : Error starting client-server protocol"
803	return;;
804	10) echo "rsync error : Error in socket I/O "
805	return;;
806	11) echo "rsync error : Error in file I/O "
807	return;;
808	12) echo "rsync error : Error in rsync protocol data stream "
809	return;;
810	13) echo "rsync error : Errors with program diagnostics "
811	return;;
812	14) echo "rsync error : Error in IPC code "
813	return;;
814	20) echo "rsync error : Received SIGUSR1 or SIGINT "
815	return;;
816	21) echo "rsync error : Some error returned by waitpid() "
817	return;;
818	22) echo "rsync error : Error allocating core memory buffers "
819	return;;
820	23) echo "rsync error : Partial transfer due to error"
821	return;;
822	24) echo "rsync error : Partial transfer due to vanished source files"
823	return;;
824	30) echo "rsync error : Timeout in data send/receive "
825	return;;
826	*) echo "rsync error : return code of rsync unknown :" $status
827	return;;
828	esac
829	else
830	echo "unknown language $MYLANG."
831	return
832	fi
833	}
834
835	#D-#==================================================
836	#D-function IGCM_sys_Miror_libIGCM
837	#D-* Purpose: Mirror libIGCM PATH and lib to cesium
838	#D-* Examples:
839	#D-
840	function IGCM_sys_Mirror_libIGCM {
841	IGCM_debug_PushStack "IGCM_sys_Mirror_libIGCM"
842	if ( $DEBUG_sys ) ; then
843	echo "IGCM_sys_Mirror_libIGCM"
844	fi
845
846	typeset status
847
848	mkdir -p ${HOME}/MIRROR/${PATHlibIGCM}
849
850	echo ${RSYNC} ${RSYNC_opt} ${libIGCM} ${HOME}/MIRROR/${PATHlibIGCM} > out_rsync 2>&1
851	${RSYNC} ${RSYNC_opt} ${libIGCM} ${HOME}/MIRROR/${PATHlibIGCM} >> out_rsync 2>&1
852	status=$?
853
854	if [ ${status} -gt 0 ] ; then
855	echo "IGCM_sys_Mirror_libIGCM Warning : no libIGCM on cesium."
856	cat out_rsync
857	fi
858	IGCM_debug_PopStack "IGCM_sys_Mirror_libIGCM"
859	}
860
861	#D-#==================================================
862	#D-function IGCM_sys_Cp
863	#D-* Purpose: generic cp
864	#D-* Examples:
865	#D-
866	function IGCM_sys_Cp {
867	IGCM_debug_PushStack "IGCM_sys_Cp" $@
868	if ( $DEBUG_sys ) ; then
869	echo "IGCM_sys_Cp :" $@
870	fi
871
872	typeset status
873
874	echo cp $@ > out_rsync 2>&1
875	\cp $@ >> out_rsync 2>&1
876	status=$?
877
878	if [ ${status} -gt 0 ] ; then
879	echo "IGCM_sys_Cp : error code ${status}"
880	cat out_rsync
881	IGCM_debug_Exit "IGCM_sys_Cp"
882	else
883	\rm out_rsync
884	fi
885	IGCM_debug_PopStack "IGCM_sys_Cp"
886	}
887
888	#D-#==================================================
889	#D-function IGCM_sys_Rm
890	#D-* Purpose: generic rm
891	#D-* Examples:
892	#D-
893	function IGCM_sys_Rm {
894	IGCM_debug_PushStack "IGCM_sys_Rm" -- $@
895	if ( $DEBUG_sys ) ; then
896	echo "IGCM_sys_Rm :" $@
897	fi
898
899	typeset status
900
901	echo rm $@ > out_rsync 2>&1
902	\rm $@ >> out_rsync 2>&1
903	status=$?
904
905	if [ ${status} -gt 0 ] ; then
906	echo "IGCM_sys_Rm : error code ${status}"
907	cat out_rsync
908	IGCM_debug_Exit "IGCM_sys_Rm"
909	else
910	\rm out_rsync
911	fi
912	IGCM_debug_PopStack "IGCM_sys_Rm"
913	}
914
915	#D-#==================================================
916	#D-function IGCM_sys_RmRunDir
917	#D-* Purpose: rm tmpdir (dummy function most of the time batch
918	#D- scheduler will do the job)
919	#D-* Examples:
920	#D-
921	function IGCM_sys_RmRunDir {
922	IGCM_debug_PushStack "IGCM_sys_RmRunDir" -- $@
923	if ( $DEBUG_sys ) ; then
924	echo "IGCM_sys_RmRunDir :" $@
925	fi
926
927	typeset status
928
929	echo rm $@ > out_rsync 2>&1
930	\rm $@ >> out_rsync 2>&1
931	status=$?
932
933	if [ ${status} -gt 0 ] ; then
934	echo "IGCM_sys_RmRunDir : error code ${status}"
935	cat out_rsync
936	IGCM_debug_Exit "IGCM_sys_RmRunDir"
937	else
938	\rm out_rsync
939	fi
940	IGCM_debug_PopStack "IGCM_sys_RmRunDir"
941	}
942
943	#D-#==================================================
944	#D-function IGCM_sys_Mv
945	#D-* Purpose: generic move
946	#D-* Examples:
947	#D-
948	function IGCM_sys_Mv {
949	IGCM_debug_PushStack "IGCM_sys_Mv" $@
950	if ( $DEBUG_sys ) ; then
951	echo "IGCM_sys_Mv :" $@
952	fi
953
954	if [ $DRYRUN = 0 ]; then
955
956	typeset status
957
958	echo mv $@ > out_rsync 2>&1
959	\mv $@ >> out_rsync 2>&1
960	status=$?
961
962	if [ ${status} -gt 0 ] ; then
963	echo "IGCM_sys_Mv : error code ${status}"
964	cat out_rsync
965	IGCM_debug_Exit "IGCM_sys_Mv"
966	else
967	\rm out_rsync
968	fi
969	else
970	( ${DEBUG_debug} ) && echo "DRYRUN mode = " $DRYRUN >> stack
971	fi
972
973	IGCM_debug_PopStack "IGCM_sys_Mv"
974	}
975
976	#D-#==================================================
977	#D-function IGCM_sys_Put_Dir
978	#D-* Purpose: Copy a complete directory on $(ARCHIVE)
979	#D-* Examples:
980	#D-
981	function IGCM_sys_Put_Dir {
982	IGCM_debug_PushStack "IGCM_sys_Put_Dir" $@
983	if ( $DEBUG_sys ) ; then
984	echo "IGCM_sys_Put_Dir :" $@
985	fi
986	if [ $DRYRUN = 0 ]; then
987	if [ ! -d ${1} ] ; then
988	echo "WARNING : IGCM_sys_Put_Dir ${1} DOES NOT EXIST ."
989	IGCM_debug_PopStack "IGCM_sys_Put_Dir"
990	return
991	fi
992
993	typeset status
994
995	# Only if we use rsync
996	#IGCM_sys_TestDirArchive $( dirname $2 )
997	#
998	#USUAL WAY
999	\cp -r $1 $2 > out_rsync 2>&1
1000	status=$?
1001
1002	if [ ${status} -gt 0 ] ; then
1003	echo "IGCM_sys_Put_Dir : error code ${status}"
1004	cat out_rsync
1005	IGCM_debug_Exit "IGCM_sys_Put_Dir"
1006	else
1007	\rm out_rsync
1008	fi
1009	else
1010	( ${DEBUG_debug} ) && echo "DRYRUN mode = " $DRYRUN >> stack
1011	fi
1012	IGCM_debug_PopStack "IGCM_sys_Put_Dir"
1013	}
1014
1015	#D-#==================================================
1016	#D-function IGCM_sys_Get_Dir
1017	#D-* Purpose: Copy a complete directory from ${ARCHIVE}
1018	#D-* Examples:
1019	#D-
1020	function IGCM_sys_Get_Dir {
1021	IGCM_debug_PushStack "IGCM_sys_Get_Dir" $@
1022	if ( $DEBUG_sys ) ; then
1023	echo "IGCM_sys_Get_Dir :" $@
1024	fi
1025	if [ $DRYRUN = 0 ]; then
1026	# if [ ! -d ${1} ] ; then
1027	# echo "WARNING : IGCM_sys_Get_Dir ${1} DOES NOT EXIST ."
1028	# IGCM_debug_PopStack "IGCM_sys_Get_Dir"
1029	# return
1030	# fi
1031
1032	typeset NB_ESSAI DELAI status i
1033	# number of tentative
1034	NB_ESSAI=3
1035	# time delay between tentative
1036	DELAI=2
1037
1038	# Only if we use rsync
1039	#IGCM_sys_TestDirArchive $( dirname $2 )
1040	#
1041	# USUAL WAY
1042	# add 'ccc_hsm get' (to demigrate all offline files) to reduce time of this command :
1043	ccc_hsm get -r $1
1044
1045	i=0
1046	while [ $i -lt $NB_ESSAI ] ; do
1047	\cp -ur $1 $2 >> out_rsync 2>&1
1048	status=$?
1049	if [ ${status} -gt 0 ]; then
1050	IGCM_debug_Print 2 "IGCM_sys_Get_Dir : cp failed error code ${status} ${i}/${NB_ESSAI}"
1051	IGCM_debug_Print 2 "IGCM_sys_Get_Dir : sleep ${DELAI} seconds and try again."
1052	sleep $DELAI
1053	else
1054	break
1055	fi
1056	(( i = i + 1 ))
1057	done
1058
1059	if [ ${status} -gt 0 ] ; then
1060	echo "IGCM_sys_Get_Dir : error."
1061	cat out_rsync
1062	IGCM_debug_Exit "IGCM_sys_Get_Dir"
1063	else
1064	\rm out_rsync
1065	fi
1066	else
1067	( ${DEBUG_debug} ) && echo "DRYRUN mode = " $DRYRUN >> stack
1068	fi
1069	IGCM_debug_PopStack "IGCM_sys_Get_Dir"
1070	}
1071
1072	#D-#==================================================
1073	#D-function IGCM_sys_Get_Master
1074	#D-* Purpose: Copy a complete directory from MASTER filesystem
1075	#D-* Examples:
1076	#D-
1077	function IGCM_sys_Get_Master {
1078	IGCM_debug_PushStack "IGCM_sys_Get_Master" $@
1079	if ( $DEBUG_sys ) ; then
1080	echo "IGCM_sys_Get_Master :" $@
1081	fi
1082	if [ $DRYRUN = 0 ]; then
1083	if ( [ ! -d ${1} ] && [ ! -f ${1} ] ) ; then
1084	echo "WARNING : IGCM_sys_Get_Master ${1} DOES NOT EXIST ."
1085	IGCM_debug_PopStack "IGCM_sys_Get_Master"
1086	return
1087	fi
1088
1089	typeset NB_ESSAI DELAI status i
1090	# number of tentative
1091	NB_ESSAI=3
1092	# time delay between tentative
1093	DELAI=2
1094
1095	i=0
1096	while [ $i -lt $NB_ESSAI ] ; do
1097	\cp -urL $1 $2 > out_rsync 2>&1
1098	status=$?
1099	if [ ${status} -gt 0 ]; then
1100	IGCM_debug_Print 2 "IGCM_sys_Get_Master : cp failed error code ${status} ${i}/${NB_ESSAI}"
1101	IGCM_debug_Print 2 "IGCM_sys_Get_Master : sleep ${DELAI} seconds and try again."
1102	sleep $DELAI
1103	else
1104	break
1105	fi
1106	(( i = i + 1 ))
1107	done
1108
1109	if [ ${status} -gt 0 ] ; then
1110	echo "IGCM_sys_Get_Master : error."
1111	cat out_rsync
1112	IGCM_debug_Exit "IGCM_sys_Get_Master"
1113	else
1114	\rm out_rsync
1115	fi
1116	else
1117	( ${DEBUG_debug} ) && echo "DRYRUN mode = " $DRYRUN >> stack
1118	fi
1119	IGCM_debug_PopStack "IGCM_sys_Get_Master"
1120	}
1121
1122	#====================================================
1123	#- Call IGCM_sys_Mirror_libIGCM now !
1124	if ( $MirrorlibIGCM ) ; then
1125	IGCM_sys_Mirror_libIGCM
1126	fi
1127
1128	#D-#==================================================
1129	#D-function IGCM_sys_Put_Rest
1130	#D-* Purpose: Put computied restarts on ${ARCHIVE}.
1131	#D- File and target directory must exist.
1132	#D-* Examples:
1133	#D-
1134	function IGCM_sys_Put_Rest {
1135	IGCM_debug_PushStack "IGCM_sys_Put_Rest" $@
1136	if ( $DEBUG_sys ) ; then
1137	echo "IGCM_sys_Put_Rest :" $@
1138	fi
1139	if [ $DRYRUN = 0 ]; then
1140	if [ ! -f ${1} ] ; then
1141	echo "ERROR : IGCM_sys_Put_Rest ${1} DOES NOT EXIST ."
1142	IGCM_debug_Exit "IGCM_sys_Put_Rest"
1143	fi
1144
1145	typeset status
1146	#
1147	# USUAL WAY
1148	\cp $1 $2 > out_rsync 2>&1
1149	status=$?
1150
1151	# #RSYNC WITH NETWORK SSH CALL
1152	# echo ${RSYNC} ${RSYNC_opt} -e ssh ${RUN_DIR}/$1 ${STOREHOST}:${2} > out_rsync 2>&1
1153	# ${RSYNC} ${RSYNC_opt} -e ssh ${RUN_DIR}/$1 ${STOREHOST}:${2} >> out_rsync 2>&1
1154
1155	# #RSYNC WITH NFS USE
1156	# echo ${RSYNC} ${RSYNC_opt} ${RUN_DIR}/$1 ${2} > out_rsync 2>&1
1157	# ${RSYNC} ${RSYNC_opt} ${RUN_DIR}/$1 ${2} >> out_rsync 2>&1
1158
1159	# status=$?
1160	# IGCM_sys_Rsync_out $status
1161
1162	# ${libIGCM}/libIGCM_sys/IGCM_analyse_rsync_out.awk out_rsync
1163	# (( status=status+$? ))
1164
1165	if [ ${status} -gt 0 ] ; then
1166	echo "IGCM_sys_Put_Rest : cp failed error code ${status}"
1167	[ -f ${1} ] && ls -l ${1}
1168	[ -f ${2} ] && ls -l ${2}
1169	[ -f ${2}/${1} ] && ls -l ${2}/${1}
1170	cat out_rsync
1171	IGCM_debug_Exit "IGCM_sys_Put_Rest"
1172	else
1173
1174	if [ X${JobType} = XRUN ] ; then
1175	[ -f ${2} ] && IGCM_sys_Chmod 444 ${2}
1176	[ -f ${2}/${1} ] && IGCM_sys_Chmod 444 ${2}/${1}
1177	fi
1178
1179	\rm out_rsync
1180	fi
1181	else
1182	( ${DEBUG_debug} ) && echo "DRYRUN mode = " $DRYRUN >> stack
1183	fi
1184	IGCM_debug_PopStack "IGCM_sys_Put_Rest"
1185	}
1186
1187	#D-#==================================================
1188	#D-function IGCM_sys_PutBuffer_Rest
1189	#D-* Purpose: Put computied restarts on ${SCRATCHDIR}.
1190	#D- File and target directory must exist.
1191	#D-* Examples:
1192	#D-
1193	function IGCM_sys_PutBuffer_Rest {
1194	IGCM_debug_PushStack "IGCM_sys_PutBuffer_Rest" $@
1195	if ( $DEBUG_sys ) ; then
1196	echo "IGCM_sys_PutBuffer_Rest :" $@
1197	fi
1198	if [ $DRYRUN = 0 ]; then
1199	if [ ! -f ${1} ] ; then
1200	echo "ERROR : IGCM_sys_PutBuffer_Rest ${1} DOES NOT EXIST ."
1201	IGCM_debug_Exit "IGCM_sys_PutBuffer_Rest"
1202	fi
1203
1204	typeset status
1205	#
1206	# USUAL WAY
1207	\cp $1 $2 > out_rsync 2>&1
1208	status=$?
1209
1210	if [ ${status} -gt 0 ] ; then
1211	echo "IGCM_sys_PutBuffer_Rest : error code ${status}"
1212	[ -f ${2} ] && ls -l ${2}
1213	[ -f ${2}/${1} ] && ls -l ${2}/${1}
1214	cat out_rsync
1215	IGCM_debug_Exit "IGCM_sys_PutBuffer_Rest"
1216	else
1217
1218	if [ X${JobType} = XRUN ] ; then
1219	[ -f ${2} ] && IGCM_sys_Chmod 444 ${2}
1220	[ -f ${2}/${1} ] && IGCM_sys_Chmod 444 ${2}/${1}
1221	fi
1222
1223	\rm out_rsync
1224	fi
1225	else
1226	( ${DEBUG_debug} ) && echo "DRYRUN mode = " $DRYRUN >> stack
1227	fi
1228	IGCM_debug_PopStack "IGCM_sys_PutBuffer_Rest"
1229	}
1230
1231	#D-#==================================================
1232	#D-function IGCM_sys_Put_Out
1233	#D-* Purpose: Copy a file on ${ARCHIVE} after having chmod it in readonly
1234	#D-* Examples:
1235	#D-
1236	function IGCM_sys_Put_Out {
1237	IGCM_debug_PushStack "IGCM_sys_Put_Out" $@
1238	if ( $DEBUG_sys ) ; then
1239	echo "IGCM_sys_Put_Out :" $@
1240	fi
1241
1242	typeset NB_ESSAI DELAI status i exist skip
1243
1244	# number of tentative
1245	NB_ESSAI=3
1246	# time delay between tentative
1247	DELAI=2
1248
1249	if [ $DRYRUN = 0 ]; then
1250	if [ ! -f ${1} ] ; then
1251	echo "WARNING : IGCM_sys_Put_Out ${1} DOES NOT EXIST ."
1252	IGCM_debug_PopStack "IGCM_sys_Put_Out"
1253	return 1
1254	fi
1255	#
1256	IGCM_sys_MkdirArchive $( dirname $2 )
1257	#
1258
1259	#=====================================================
1260	# COMMENT OUT DOUBLE COPY ON SCRATCHDIR
1261	#=====================================================
1262
1263	#echo ${2} \| grep "${R_OUT}" > /dev/null 2>&1
1264	#if [ $? -eq 0 ] ; then
1265	# typeset WORKPATH FILEPATH
1266	# WORKPATH=$( dirname $2 \| sed -e "s\|${R_OUT}\|${R_BUF}\|" )
1267	# IGCM_sys_MkdirWork ${WORKPATH}
1268	# FILEPATH=${WORKPATH}/$( basename $2 )
1269	# #
1270	# IGCM_sys_Cp ${1} ${FILEPATH}
1271	#fi
1272
1273	exist=false
1274	skip=false
1275	if [ -f $2 ] ; then
1276	IGCM_debug_Print 1 "$2 already exist"
1277	#dmget $2
1278	ccc_hsm get $2
1279	exist=true
1280	if [ "X$( diff $1 $2 )" = X ] ; then
1281	IGCM_debug_Print 2 "$1 and $2 are the same file, we skip the copy"
1282	skip=true
1283	else
1284	IGCM_debug_Print 2 "$1 and $2 are not the same file, we force the copy"
1285	skip=false
1286	fi
1287	fi
1288	#
1289	if ( [ X${exist} = Xtrue ] && [ X${skip} = Xfalse ] ) ; then
1290	IGCM_sys_Chmod u+w $2
1291	fi
1292
1293	if [ X${skip} = Xfalse ] ; then
1294	i=0
1295	while [ $i -lt $NB_ESSAI ] ; do
1296	# USUAL WAY
1297	\cp $1 $2 > out_rsync 2>&1
1298	status=$?
1299	if [ ${status} -gt 0 ]; then
1300	IGCM_debug_Print 2 "IGCM_sys_Put_Out : cp failed error code ${status} ${i}/${NB_ESSAI}"
1301	IGCM_debug_Print 2 "IGCM_sys_Put_Out : sleep ${DELAI} seconds and try again."
1302	[ -f ${1} ] && ls -l ${1}
1303	[ -f ${2} ] && ls -l ${2}
1304	[ -f ${2}/${1} ] && ls -l ${2}/${1}
1305	sleep $DELAI
1306	else
1307	break
1308	fi
1309	(( i = i + 1 ))
1310	done
1311	fi
1312
1313	# #RSYNC WITH NETWORK SSH CALL
1314	# echo ${RSYNC} ${RSYNC_opt} -e ssh ${RUN_DIR}/$1 ${STOREHOST}:${2} > out_rsync 2>&1
1315	# ${RSYNC} ${RSYNC_opt} -e ssh ${RUN_DIR}/$1 ${STOREHOST}:${2} >> out_rsync 2>&1
1316
1317	# #RSYNC WITH NFS USE
1318	# echo ${RSYNC} ${RSYNC_opt} ${RUN_DIR}/$1 ${2} > out_rsync 2>&1
1319	# ${RSYNC} ${RSYNC_opt} ${RUN_DIR}/$1 ${2} >> out_rsync 2>&1
1320
1321	# status=$?
1322	# IGCM_sys_Rsync_out $status
1323
1324	# ${libIGCM}/libIGCM_sys/IGCM_analyse_rsync_out.awk out_rsync
1325	# (( status=status+$? ))
1326
1327	if [ ${status} -gt 0 ] ; then
1328	echo "IGCM_sys_Put_Out : error."
1329	[ -f ${1} ] && ls -l ${1}
1330	[ -f ${2} ] && ls -l ${2}
1331	[ -f ${2}/${1} ] && ls -l ${2}/${1}
1332	cat out_rsync
1333	IGCM_debug_Exit "IGCM_sys_Put_Out"
1334	else
1335
1336	if [ X${JobType} = XRUN ] ; then
1337	if [ X${3} = X ] ; then
1338	[ -f ${2} ] && IGCM_sys_Chmod 444 ${2}
1339	[ -f ${2}/${1} ] && IGCM_sys_Chmod 444 ${2}/${1}
1340	fi
1341	fi
1342
1343	\rm out_rsync
1344	fi
1345	else
1346	( ${DEBUG_debug} ) && echo "DRYRUN mode = " $DRYRUN >> stack
1347	fi
1348	IGCM_debug_PopStack "IGCM_sys_Put_Out"
1349	return 0
1350	}
1351
1352	#D-#==================================================
1353	#D-function IGCM_sys_PutBuffer_Out
1354	#D-* Purpose: Copy a file on ${SCRATCHDIR} after having chmod it in readonly
1355	#D-* Examples:
1356	#D-
1357	function IGCM_sys_PutBuffer_Out {
1358	IGCM_debug_PushStack "IGCM_sys_PutBuffer_Out" $@
1359	if ( $DEBUG_sys ) ; then
1360	echo "IGCM_sys_PutBuffer_Out :" $@
1361	fi
1362
1363	typeset NB_ESSAI DELAI status i exist skip
1364
1365	# number of tentative
1366	NB_ESSAI=3
1367	# time delay between tentative
1368	DELAI=2
1369
1370	if [ $DRYRUN = 0 ]; then
1371	if [ ! -f ${1} ] ; then
1372	echo "WARNING : IGCM_sys_PutBuffer_Out ${1} DOES NOT EXIST ."
1373	IGCM_debug_PopStack "IGCM_sys_PutBuffer_Out"
1374	return 1
1375	fi
1376	#
1377	IGCM_sys_Mkdir $( dirname $2 )
1378	#
1379
1380	exist=false
1381	skip=false
1382	if [ -f $2 ] ; then
1383	IGCM_debug_Print 1 "$2 already exist"
1384	exist=true
1385	if [ "X$( diff $1 $2 )" = X ] ; then
1386	IGCM_debug_Print 2 "$1 and $2 are the same file, we skip the copy"
1387	skip=true
1388	else
1389	IGCM_debug_Print 2 "$1 and $2 are not the same file, we force the copy"
1390	skip=false
1391	fi
1392	fi
1393	#
1394	if ( [ X${exist} = Xtrue ] && [ X${skip} = Xfalse ] ) ; then
1395	IGCM_sys_Chmod u+w $2
1396	fi
1397
1398	if [ X${skip} = Xfalse ] ; then
1399	i=0
1400	while [ $i -lt $NB_ESSAI ] ; do
1401	# USUAL WAY
1402	\cp $1 $2 > out_rsync 2>&1
1403	status=$?
1404	if [ ${status} -gt 0 ]; then
1405	IGCM_debug_Print 2 "IGCM_sys_PutBuffer_Out : cp failed error code ${status} ${i}/${NB_ESSAI}"
1406	IGCM_debug_Print 2 "IGCM_sys_PutBuffer_Out : sleep ${DELAI} seconds and try again."
1407	[ -f ${2} ] && ls -l ${2}
1408	[ -f ${2}/${1} ] && ls -l ${2}/${1}
1409	sleep $DELAI
1410	else
1411	break
1412	fi
1413	(( i = i + 1 ))
1414	done
1415	fi
1416
1417	if [ ${status} -gt 0 ] ; then
1418	echo "IGCM_sys_PutBuffer_Out : error."
1419	[ -f ${2} ] && ls -l ${2}
1420	[ -f ${2}/${1} ] && ls -l ${2}/${1}
1421	cat out_rsync
1422	IGCM_debug_Exit "IGCM_sys_PutBuffer_Out"
1423	else
1424
1425	if [ X${JobType} = XRUN ] ; then
1426	if [ X${3} = X ] ; then
1427	[ -f ${2} ] && IGCM_sys_Chmod 444 ${2}
1428	[ -f ${2}/${1} ] && IGCM_sys_Chmod 444 ${2}/${1}
1429	fi
1430	fi
1431
1432	\rm out_rsync
1433	fi
1434	else
1435	( ${DEBUG_debug} ) && echo "DRYRUN mode = " $DRYRUN >> stack
1436	fi
1437	IGCM_debug_PopStack "IGCM_sys_PutBuffer_Out"
1438	return 0
1439	}
1440
1441	#D-#==================================================
1442	#D-function IGCM_sys_Get
1443	#D-* Purpose: Get a file from ${ARCHIVE}
1444	#D-* Examples: IGCM_sys_Get myfile /destpath/myfile_with_PREFIX
1445	#D- IGCM_sys_Get /l Array_contain_myfiles /destpath/
1446	function IGCM_sys_Get {
1447	IGCM_debug_PushStack "IGCM_sys_Get" $@
1448
1449	typeset DEST dm_liste target file_work
1450	typeset NB_ESSAI DELAI status i
1451
1452	if ( $DEBUG_sys ) ; then
1453	echo "IGCM_sys_Get :" $@
1454	fi
1455
1456	# number of tentative
1457	NB_ESSAI=3
1458	# time delay between tentative
1459	DELAI=2
1460
1461	if [ $DRYRUN -le 2 ]; then
1462	if [ X${1} = X'/l' ] ; then
1463	# test if the first file is present in the old computation :
1464	eval set +A dm_liste \${${2}}
1465	else
1466	eval set +A dm_liste ${1}
1467	fi
1468	eval DEST=\${${#}}
1469
1470	#=====================================================
1471	# COMMENT OUT DOUBLE COPY ON SCRATCHDIR
1472	#=====================================================
1473
1474	# Is it an R_OUT file (not R_IN) ?
1475	#echo ${dm_liste[0]} \| grep "${R_OUT}" > /dev/null 2>&1
1476	#if [ $? -eq 0 ] ; then
1477	# # Yes ? then we try to get it in SCRATCHDIR
1478	# set +A file_work $( echo ${dm_liste[*]} \| sed -e "s\|${R_OUT}\|${R_BUF}\|g" )
1479	# if [ -f ${file_work[0]} ] ; then
1480	# IGCM_sys_Cp ${file_work[*]} ${DEST}
1481	# IGCM_debug_PopStack "IGCM_sys_Get"
1482	# return
1483	# fi
1484	#fi
1485
1486	ccc_hsm get ${dm_liste[*]} > out_rsync 2>&1
1487	status=$?
1488	if [ ${status} -gt 0 ] ; then
1489	echo "WARNING IGCM_sys_Get : error code ${status}"
1490	cat out_rsync
1491	echo "WARNING IGCM_sys_Get : will stop later if the cp fails."
1492	fi
1493
1494	#if [ ${status} -gt 0 ] ; then
1495	# if [ ! "X$( grep "Lost dmusrcmd connection" out_rsync )" = "X" ] ; then
1496	# cat out_rsync
1497	# echo "WARNING IGCM_sys_Get : Lost dmusrcmd connection : "
1498	# sleep 30
1499	# echo "We try another time"
1500	## dmget ${dm_liste[*]} > out_rsync 2>&1
1501	# ccc_hsm get ${dm_liste[*]} > out_rsync 2>&1
1502	# status=$?
1503	# if [ ${status} -gt 0 ] ; then
1504	# echo "ERROR IGCM_sys_Get : again demigration error :"
1505	# cat out_rsync
1506	# IGCM_debug_Exit "IGCM_sys_Get"
1507	# fi
1508	# else
1509	# echo "ERROR IGCM_sys_Get : demigration error :"
1510	# cat out_rsync
1511	# IGCM_debug_Exit "IGCM_sys_Get"
1512	# fi
1513	#fi
1514
1515	# #RSYNC WITH NETWORK SSH CALL
1516	# echo ${RSYNC} ${RSYNC_opt} -e ssh ${STOREHOST}:"${dm_liste}" ${STOREHOST}:${RUN_DIR}/${DEST} > out_rsync 2>&1
1517	# ${RSYNC} ${RSYNC_opt} -e ssh ${STOREHOST}:"${dm_liste}" ${STOREHOST}:${RUN_DIR}/${DEST} >> out_rsync 2>&1
1518
1519	# #RSYNC WITH NFS USE
1520	# echo ${RSYNC} ${RSYNC_opt} ${dm_liste} ${RUN_DIR}/${DEST} > out_rsync 2>&1
1521	# ${RSYNC} ${RSYNC_opt} ${dm_liste} ${RUN_DIR}/${DEST} >> out_rsync 2>&1
1522
1523	# status=$?
1524	# IGCM_sys_Rsync_out $status
1525
1526	# ${libIGCM}/libIGCM_sys/IGCM_analyse_rsync_out.awk out_rsync
1527	# (( status=status+$? ))
1528
1529	#USUAL WAY
1530	if [ X${1} = X'/l' ] ; then
1531	for target in ${dm_liste[*]} ; do
1532	local_file=$( basename ${target} )
1533	# test if the target file is present before the loop
1534	IGCM_sys_TestFileArchive ${target}
1535	status=$?
1536	if [ ${status} -gt 0 ] ; then
1537	echo "IGCM_sys_Get, ERROR : regular file ${target} DOES NOT EXIST ."
1538	IGCM_debug_Exit "IGCM_sys_Get"
1539	else
1540	i=0
1541	while [ $i -lt $NB_ESSAI ] ; do
1542	\cp ${target} ${DEST}/${local_file} >> out_rsync 2>&1
1543	status=$?
1544	if [ ${status} -gt 0 ]; then
1545	IGCM_debug_Print 2 "IGCM_sys_Get : cp failed error code ${status} ${i}/${NB_ESSAI}"
1546	IGCM_debug_Print 2 "IGCM_sys_Get : sleep ${DELAI} seconds and try again."
1547	sleep $DELAI
1548	else
1549	break
1550	fi
1551	(( i = i + 1 ))
1552	done
1553	if [ ${status} -gt 0 ] ; then
1554	echo "IGCM_sys_Get : error"
1555	cat out_rsync
1556	\rm out_rsync
1557	IGCM_debug_Exit "IGCM_sys_Get"
1558	else
1559	\rm out_rsync
1560	fi
1561	fi
1562	done
1563	else
1564	i=0
1565	while [ $i -lt $NB_ESSAI ] ; do
1566	\cp ${dm_liste} ${DEST} >> out_rsync 2>&1
1567	status=$?
1568	if [ ${status} -gt 0 ]; then
1569	IGCM_debug_Print 2 "IGCM_sys_Get : cp failed error code ${status} ${i}/${NB_ESSAI}"
1570	IGCM_debug_Print 2 "IGCM_sys_Get : sleep ${DELAI} seconds and try again."
1571	sleep $DELAI
1572	else
1573	break
1574	fi
1575	(( i = i + 1 ))
1576	done
1577	if [ ${status} -gt 0 ] ; then
1578	echo "IGCM_sys_Get : error"
1579	cat out_rsync
1580	\rm out_rsync
1581	IGCM_debug_Exit "IGCM_sys_Get"
1582	else
1583	\rm out_rsync
1584	fi
1585	fi
1586	else
1587	( ${DEBUG_debug} ) && echo "DRYRUN mode = " $DRYRUN >> stack
1588	fi
1589	IGCM_debug_PopStack "IGCM_sys_Get"
1590	}
1591
1592	#D-#==================================================
1593	#D-function IGCM_sys_GetBuffer
1594	#D-* Purpose: Get a file from ${SCRATCHDIR}
1595	#D-* Examples: IGCM_sys_GetBuffer myfile /destpath/myfile_with_PREFIX
1596	#D- IGCM_sys_GetBuffer /l Array_contain_myfiles /destpath/
1597	function IGCM_sys_GetBuffer {
1598	IGCM_debug_PushStack "IGCM_sys_GetBuffer" $@
1599
1600	typeset DEST buf_liste target file_work
1601	typeset NB_ESSAI DELAI status i
1602
1603	if ( $DEBUG_sys ) ; then
1604	echo "IGCM_sys_GetBuffer :" $@
1605	fi
1606
1607	# number of tentative
1608	NB_ESSAI=3
1609	# time delay between tentative
1610	DELAI=2
1611
1612	if [ $DRYRUN -le 2 ]; then
1613	if [ X${1} = X'/l' ] ; then
1614	# test if the first file is present in the old computation :
1615	eval set +A buf_liste \${${2}}
1616	else
1617	eval set +A buf_liste ${1}
1618	fi
1619	eval DEST=\${${#}}
1620
1621	#USUAL WAY
1622	if [ X${1} = X'/l' ] ; then
1623	for target in ${buf_liste[*]} ; do
1624	local_file=$( basename ${target} )
1625	i=0
1626	while [ $i -lt $NB_ESSAI ] ; do
1627	\cp ${target} ${DEST}/${local_file} >> out_rsync 2>&1
1628	status=$?
1629	if [ ${status} -gt 0 ]; then
1630	IGCM_debug_Print 2 "IGCM_sys_GetBuffer : cp failed error code ${status} ${i}/${NB_ESSAI}"
1631	IGCM_debug_Print 2 "IGCM_sys_GetBuffer : sleep ${DELAI} seconds and try again."
1632	sleep $DELAI
1633	else
1634	break
1635	fi
1636	(( i = i + 1 ))
1637	done
1638	if [ ${status} -gt 0 ] ; then
1639	echo "IGCM_sys_Get : error"
1640	cat out_rsync
1641	\rm out_rsync
1642	IGCM_debug_Exit "IGCM_sys_GetBuffer"
1643	else
1644	\rm out_rsync
1645	fi
1646	done
1647	else
1648	i=0
1649	while [ $i -lt $NB_ESSAI ] ; do
1650	\cp ${buf_liste} ${DEST} >> out_rsync 2>&1
1651	status=$?
1652	if [ ${status} -gt 0 ]; then
1653	IGCM_debug_Print 2 "IGCM_sys_GetBuffer : cp failed error code ${status} ${i}/${NB_ESSAI}"
1654	IGCM_debug_Print 2 "IGCM_sys_GetBuffer : sleep ${DELAI} seconds and try again."
1655	sleep $DELAI
1656	else
1657	break
1658	fi
1659	(( i = i + 1 ))
1660	done
1661	if [ ${status} -gt 0 ] ; then
1662	echo "IGCM_sys_Get : error"
1663	cat out_rsync
1664	\rm out_rsync
1665	IGCM_debug_Exit "IGCM_sys_GetBuffer"
1666	else
1667	\rm out_rsync
1668	fi
1669	fi
1670	else
1671	( ${DEBUG_debug} ) && echo "DRYRUN mode = " $DRYRUN >> stack
1672	fi
1673	IGCM_debug_PopStack "IGCM_sys_GetBuffer"
1674	}
1675
1676	#D-#==================================================
1677	#D-function IGCM_sys_GetDate_FichWork
1678	#D-* Purpose: donne la date filesys d'un fichier sur le filesystem WORK
1679	#D-* Examples:
1680	#D-
1681	function IGCM_sys_GetDate_FichWork {
1682	IGCM_debug_PushStack "IGCM_sys_FichWork" $@
1683	if ( $DEBUG_sys ) ; then
1684	echo "IGCM_sys_GetDate_FichWork :" $@
1685	fi
1686	typeset dateF
1687	set +A dateF -- $( ls -l --full-time --time-style='+%Y%m%d%H%M%S' ${1} )
1688	eval ${2}=${dateF[5]}
1689
1690	# donne la date filesys d'un fichier sur la machine work
1691	IGCM_debug_PopStack "IGCM_sys_FichWork"
1692	}
1693
1694	#D-#==================================================
1695	#D-function IGCM_sys_GetDate_FichArchive
1696	#D-* Purpose: donne la date filesys d'un fichier sur le filesystem ARCHIVE
1697	#D-* Examples:
1698	#D-
1699	function IGCM_sys_GetDate_FichArchive {
1700	IGCM_debug_PushStack "IGCM_sys_FichArchive" $@
1701	if ( $DEBUG_sys ) ; then
1702	echo "IGCM_sys_GetDate_FichArchive :" $@
1703	fi
1704	typeset dateF
1705	set +A dateF -- $( ls -l --full-time --time-style='+%Y%m%d%H%M%S' ${1} )
1706	eval ${2}=${dateF[5]}
1707
1708	IGCM_debug_PopStack "IGCM_sys_FichArchive"
1709	}
1710
1711	#D-#==================================================
1712	#D-function IGCM_sys_Dods_Rm
1713	#D-* Purpose: DO NOTHING ! Put ${ARCHIVE} files on DODS internet protocole.
1714	#D-* Examples:
1715	#D-
1716	function IGCM_sys_Dods_Rm {
1717	if ( $DEBUG_sys ) ; then
1718	echo "IGCM_sys_Dods_Rm :" $@
1719	fi
1720	typeset status
1721	if [ $DRYRUN = 0 ]; then
1722
1723	# if [ ! -d /dmnfs/cont003/dods/public/${LOGIN}/${R_DODS}/${1} ] ; then
1724	# echo "WARNING : IGCM_sys_Dods_Rm /dmnfs/cont003/dods/public/${LOGIN}/${R_DODS}/${1} DOES NOT EXIST ."
1725	# echo "Nothing has been done."
1726	# return
1727	# fi
1728
1729	/ccc/cont003/home/dsm/p86ipsl/bin/dods_rm public/${LOGIN}/${R_DODS}/${1} # > out_dods_rm 2>&1
1730	status=$?
1731
1732	# if [ ${status} -gt 0 ] ; then
1733	# echo "IGCM_sys_Dods_Rm : error."
1734	# cat out_dods_rm
1735	# IGCM_debug_Exit "IGCM_sys_Dods_Rm"
1736	# else
1737	# rm out_dods_rm
1738	# fi
1739
1740	else
1741	( ${DEBUG_debug} ) && echo "DRYRUN mode = " $DRYRUN >> stack
1742	fi
1743	return $status
1744	}
1745
1746	#D-#==================================================
1747	#D-function IGCM_sys_Dods_Cp
1748	#D-* Purpose: Copy $(ARCHIVE) files on DODS internet protocole.
1749	#D-* Examples:
1750	#D-
1751	function IGCM_sys_Dods_Cp {
1752	if ( $DEBUG_sys ) ; then
1753	echo "IGCM_sys_Dods_Cp :" $@
1754	fi
1755	typeset status
1756	if [ $DRYRUN = 0 ]; then
1757
1758	# if [ ! -d ${R_SAVE}/${1} ] ; then
1759	# echo "WARNING : IGCM_sys_Dods_Cp ${R_SAVE}/${1} DOES NOT EXIST ."
1760	# echo "Nothing has been done."
1761	# return
1762	# fi
1763
1764	/ccc/cont003/home/dsm/p86ipsl/bin/dods_cp ${1} public/${LOGIN}/${R_DODS} # > out_dods_cp 2>&1
1765	status=$?
1766
1767	# if [ ${status} -gt 0 ] ; then
1768	# echo "IGCM_sys_Dods_Cp : error."
1769	# cat out_dods_cp
1770	# IGCM_debug_Exit "IGCM_sys_Dods_Cp"
1771	# else
1772	# rm out_dods_cp
1773	# fi
1774
1775	else
1776	( ${DEBUG_debug} ) && echo "DRYRUN mode = " $DRYRUN >> stack
1777	fi
1778	return $status
1779	}
1780
1781	#D-#==================================================
1782	#D-function IGCM_sys_Put_Dods
1783	#D-* Purpose: Put $(ARCHIVE) files on DODS internet protocole.
1784	#D-* Examples:
1785	#D-
1786	function IGCM_sys_Put_Dods {
1787	IGCM_debug_PushStack "IGCM_sys_Put_Dods" $@
1788	if ( $DEBUG_sys ) ; then
1789	echo "IGCM_sys_Put_Dods :" $@
1790	fi
1791	#set -vx
1792	typeset status
1793	if [ $DRYRUN = 0 ]; then
1794	if ( [ ! -d ${R_SAVE}/${1} ] && [ ! -d ${R_FIGR}/${1} ] ) ; then
1795	echo "WARNING IGCM_sys_Put_Dods : None of the following directories exist. Exactly one should."
1796	echo "WARNING IGCM_sys_Put_Dods : ${R_SAVE}/${1} DOES NOT EXIST."
1797	echo "WARNING IGCM_sys_Put_Dods : ${R_FIGR}/${1} DOES NOT EXIST."
1798	IGCM_debug_PopStack "IGCM_sys_Put_Dods"
1799	return
1800	fi
1801
1802	if ( [ -d ${R_SAVE}/${1} ] && [ -d ${R_FIGR}/${1} ] ) ; then
1803	echo "WARNING IGCM_sys_Put_Dods : Both of the following directories exist. Exactly one should."
1804	echo "WARNING IGCM_sys_Put_Dods : ${R_SAVE}/${1} EXISTS."
1805	echo "WARNING IGCM_sys_Put_Dods : ${R_FIGR}/${1} EXISTS."
1806	IGCM_debug_PopStack "IGCM_sys_Put_Dods"
1807	return
1808	fi
1809	#
1810	if [ -d ${R_SAVE}/${1} ] ; then
1811	cd ${R_SAVE}
1812	elif [ -d ${R_FIGR}/${1} ] ; then
1813	cd ${R_FIGR}
1814	fi
1815
1816	IGCM_sys_Dods_Rm ${1}
1817	IGCM_sys_Dods_Cp ${1}
1818	status=0
1819
1820	if [ ${status} -gt 0 ] ; then
1821	echo "IGCM_sys_Put_Dods : error."
1822	IGCM_debug_Exit "IGCM_sys_Put_Dods"
1823	fi
1824	else
1825	( ${DEBUG_debug} ) && echo "DRYRUN mode = " $DRYRUN >> stack
1826	fi
1827	IGCM_debug_PopStack "IGCM_sys_Put_Dods"
1828	}
1829
1830	##############################################################
1831	# REBUILD OPERATOR
1832
1833	function IGCM_sys_rebuild {
1834	IGCM_debug_PushStack "IGCM_sys_rebuild" -- $@
1835	if ( $DEBUG_sys ) ; then
1836	echo "IGCM_sys_rebuild :" $@
1837	fi
1838
1839	typeset NB_ESSAI DELAI status i firstArg
1840	# number of tentative
1841	NB_ESSAI=3
1842	# time delay between tentative
1843	DELAI=2
1844
1845	i=0
1846	while [ $i -lt $NB_ESSAI ] ; do
1847	~p86ipsl/CESIUM/bin/rebuild -f -o $@ > out_rsync 2>&1
1848	status=$?
1849	if [ ${status} -gt 0 ] ; then
1850	IGCM_debug_Print 2 "IGCM_sys_rebuild : error code ${status}"
1851	cat out_rsync
1852	\rm out_rsync
1853	IGCM_debug_Print 2 "IGCM_sys_rebuild : ${i}/${NB_ESSAI} sleep ${DELAI} seconds and try again."
1854	firstArg=${1}
1855	\rm ${firstArg}
1856	sleep $DELAI
1857	else
1858	\rm out_rsync
1859	break
1860	fi
1861	(( i = i + 1 ))
1862	done
1863
1864	if [ ${status} -gt 0 ] ; then
1865	echo "IGCM_sys_rebuild : rebuild error code is ${status}"
1866	IGCM_debug_Exit "rebuild"
1867	fi
1868
1869	IGCM_debug_PopStack "IGCM_sys_rebuild"
1870	}
1871
1872	function IGCM_sys_rebuild_station {
1873	IGCM_debug_PushStack "IGCM_sys_rebuild_station" -- $@
1874	typeset i list_opt file_in file_out prefix_invert list_invert
1875	if ( $DEBUG_sys ) ; then
1876	echo "IGCM_sys_rebuild_station :" $@
1877	fi
1878	list_opt=$@
1879
1880	# Invert Axis : t,x -> x,t
1881	# t,pres,x -> x,t,pres
1882	# So that we can concatenate along x
1883	i=0
1884	for file_in in ${list_opt} ; do
1885	(( i = i + 1))
1886	[ ${i} = 1 ] && file_out=${file_in} && continue
1887	prefix_invert=$( basename ${file_in} .nc )
1888	IGCM_sys_ncpdq -a x,time_counter -a x,time_counter,presnivs ${file_in} ${prefix_invert}_xt.nc
1889	list_invert[${#list_invert[*]}]=${prefix_invert}_xt.nc
1890	done
1891
1892	# Concatenate
1893	IGCM_sys_ncrcat ${list_invert[*]} histstn_xt.nc
1894
1895	# Re-ivert file
1896	IGCM_sys_ncpdq -a time_counter,x -a time_counter,presnivs,x histstn_xt.nc ${file_out}
1897
1898	# Station re-ordering is too expansive to be run within libICGM
1899	# This is due to (ncpdq - nrcat - ncpdq) I/O sequence.
1900	# This re-ordering must be done "in memory" by the cmorization process
1901	# Anyway this is the best sequence using (ncpdq - nrcat - ncpdq)
1902	# BEGIN reordering
1903
1904	# Only LMDZ text output contains the exact ordering of the station.
1905	# We isolate this in the code below:
1906	# 0 38 -157.5000000000000 70.98591549295774
1907	# 0 54 27.49999999999999 67.18309859154928
1908	# 0 56 -62.50000000000001 82.39436619718309
1909	# 0 79 12.49999999999999 78.59154929577466
1910	# 0 116 -165.0000000000000 76.05633802816901
1911	# 0 117 130.0000000000000 70.98591549295774
1912	# 0 118 110.0000000000000 87.46478873239437
1913	# 1 40 4.999999999999995 51.97183098591550
1914	# typeset iStation iProc list_opt file_in file_out prefix_invert
1915	# typeset -Z4 j4
1916	# typeset -Z3 j3
1917
1918	# unset list_opt
1919	# set +A list_opt $@
1920
1921	# Filename after rebuild
1922	# file_out=${list_opt[0]}
1923	# Prefix of output files
1924	# prefix_invert=$( basename ${file_out} .nc )
1925	# Number of procs
1926	# num_proc=$( grep -i mpi_size ${PREFIX}_${Exe_Output} \| wc -l )
1927
1928	# iProc=0
1929	# while [ ${iProc} -lt ${num_proc} ] ; do
1930	# Array containing Station as a number
1931	# unset proc_stn
1932	# set +A proc_stn $( grep "iophy_mpi rank ip lon lat $iProc" ${PREFIX}_${Exe_Output} \| sed -e "s/iophy_mpi rank ip lon lat //g" \| awk ' {print $2}' )
1933	# Number of stations produced by processor proc
1934	# stationLast=${#proc_stn[*]}
1935	# Proc number on 4 digits
1936	# j4=${iProc}
1937	# Init
1938	# iStation=0
1939	# while [ ${iStation} -lt ${stationLast} ] ; do
1940	# Station number on 3 digits
1941	# j3=${proc_stn[${iStation}]}
1942	# Extract station
1943	# Invert Axis : t,x -> x,t
1944	# t,pres,x -> x,t,pres
1945	# So that we can concatenate along x
1946	# IGCM_sys_ncpdq -a x,time_counter -a x,time_counter,presnivs -d x,$iStation,$iStation ${prefix_invert}_${j4}.nc ${prefix_invert}_stn_${j3}.nc
1947	# (( iStation = iStation + 1 ))
1948	# done
1949	# (( iProc = iProc + 1 ))
1950	# done
1951
1952	# Concatenate all station along x
1953	# IGCM_sys_ncrcat ${prefix_invert}_stn_???.nc ${prefix_invert}_xt.nc
1954
1955	# Re-invert file
1956	# IGCM_sys_ncpdq -a time_counter,x -a time_counter,presnivs,x ${prefix_invert}_xt.nc ${file_out}
1957
1958	# END reordering
1959
1960	IGCM_debug_PopStack "IGCM_sys_rebuild_station"
1961	}
1962
1963	############################################################
1964	# Activate Running Environnment Variables
1965
1966	function IGCM_sys_activ_variables {
1967	IGCM_debug_PushStack "IGCM_sys_activ_variables"
1968	if ( $DEBUG_sys ) ; then
1969	echo "IGCM_sys_activ_variables"
1970	fi
1971
1972	ulimit -s unlimited
1973
1974	IGCM_debug_PopStack "IGCM_sys_activ_variables"
1975	}
1976
1977	############################################################
1978	# Desactivate Running Environnment Variables
1979
1980	function IGCM_sys_desactiv_variables {
1981	IGCM_debug_PushStack "IGCM_sys_desactiv_variables"
1982	if ( $DEBUG_sys ) ; then
1983	echo "IGCM_sys_desactiv_variables"
1984	fi
1985	IGCM_debug_PopStack "IGCM_sys_desactiv_variables"
1986	}
1987
1988	############################################################
1989	# Build MPI/OMP scripts run file (dummy function)
1990
1991	function IGCM_sys_build_run_file {
1992
1993	IGCM_debug_Print 3 " dummy function : IGCM_sys_build_run_file "
1994
1995	}
1996
1997	############################################################
1998	# Build MPI/OMP scripts
1999	function IGCM_sys_build_execution_scripts
2000	{
2001	IGCM_debug_PushStack "IGCM_sys_build_execution_scripts" $@
2002	if ( $DEBUG_sys ) ; then
2003	echo "IGCM_sys_build_execution_scripts " $@
2004	fi
2005
2006	# Verification with MSUB parameter
2007	EXECUTION=${HOST_MPIRUN_COMMAND}
2008
2009	if ( ${OK_PARA_MPMD} ) ; then
2010
2011	if [ -f run_file ] ; then
2012	IGCM_sys_Rm -f run_file
2013	fi
2014	touch run_file
2015
2016	# run_file construction
2017
2018	# Then first loop on the components for the coupler ie oasis
2019
2020	### the coupler ie oasis must be the first one
2021	for comp in ${config_ListOfComponents[*]} ; do
2022
2023	eval ExeNameIn=\${config_Executable_${comp}[0]}
2024	eval ExeNameOut=\${config_Executable_${comp}[1]}
2025
2026	# for CPL component only
2027	if [ "X${comp}" = "XCPL" ] ; then
2028
2029	eval comp_proc_mpi_loc=\${${comp}_PROC_MPI}
2030	eval comp_proc_omp_loc=\${${comp}_PROC_OMP}
2031	echo "${comp_proc_mpi_loc} ./${ExeNameOut}" >> run_file
2032	fi
2033	done
2034
2035	# Then second loop on the components
2036
2037	for comp in ${config_ListOfComponents[*]} ; do
2038
2039	eval ExeNameIn=\${config_Executable_${comp}[0]}
2040	eval ExeNameOut=\${config_Executable_${comp}[1]}
2041
2042	# Only if we really have an executable for the component and not the coupler ie oasis:
2043	if ( [ "X${ExeNameOut}" != X\"\" ] && [ "X${comp}" != "XCPL" ] ) ; then
2044
2045	eval comp_proc_mpi_loc=\${${comp}_PROC_MPI}
2046	eval comp_proc_omp_loc=\${${comp}_PROC_OMP}
2047	echo "${comp_proc_mpi_loc} ./${ExeNameOut}" >> run_file
2048	fi
2049	done
2050
2051	EXECUTION="${HOST_MPIRUN_COMMAND} -f ./run_file"
2052
2053	IGCM_sys_Chmod u+x run_file
2054	if ( $DEBUG_sys ) ; then
2055	echo "run_file contains : "
2056	cat run_file
2057	fi
2058
2059	else # Only one executable. launch it.
2060
2061	#
2062	for comp in ${config_ListOfComponents[*]} ; do
2063
2064	# Only if we really have an executable for the component :
2065	eval ExeNameOut=\${config_Executable_${comp}[1]}
2066	if ( [ "X${ExeNameOut}" != X\"\" ] && [ "X${ExeNameOut}" != "Xinca.dat" ] ) ; then
2067
2068	echo "#!/bin/ksh" > script_${ExeNameOut}.ksh
2069	echo "" >> script_${ExeNameOut}.ksh
2070	IGCM_sys_Chmod u+x script_${ExeNameOut}.ksh
2071
2072	if ( ${OK_PARA_OMP} ) ; then
2073	eval comp_proc_omp_loc=\${${comp}_PROC_OMP}
2074	echo "" >> script_${ExeNameOut}.ksh
2075	echo "export KMP_STACKSIZE=3g" >> script_${ExeNameOut}.ksh
2076	echo "export KMP_LIBRARY=turnaround" >> script_${ExeNameOut}.ksh
2077	echo "export MKL_SERIAL=YES" >> script_${ExeNameOut}.ksh
2078	echo "OMP_NUM_THREADS=${comp_proc_omp_loc}" >> script_${ExeNameOut}.ksh
2079	fi
2080
2081	if ( ${OK_PARA_MPI} ) ; then
2082	eval comp_proc_mpi_loc=\${${comp}_PROC_MPI}
2083	# Default : ccc_mprun used if nb_proc gt 1
2084	# to have out/err per process on different files
2085	# echo "./${ExeNameOut} > out_${ExeNameOut}.out.\${SLURM_PROCID} 2>out_${ExeNameOut}.err.\${SLURM_PROCID}" >> script_${ExeNameOut}.ksh
2086	echo "./${ExeNameOut}" >> script_${ExeNameOut}.ksh
2087	EXECUTION="${HOST_MPIRUN_COMMAND} -n ${comp_proc_mpi_loc} ./script_${ExeNameOut}.ksh"
2088	else
2089	# Default : ccc_mprun is NOT used if nb_proc eq 1
2090	# to have out/err per process on different files
2091	# echo "./${ExeNameOut} > out_${ExeNameOut}.out 2>out_${ExeNameOut}.err" >> script_${ExeNameOut}.ksh
2092	echo "./${ExeNameOut}" >> script_${ExeNameOut}.ksh
2093	EXECUTION="/usr/bin/time ./script_${ExeNameOut}.ksh"
2094	fi
2095
2096	IGCM_debug_Print 1 "sys Curie : script_${ExeNameOut}.ksh contains"
2097	cat script_${ExeNameOut}.ksh
2098
2099	fi
2100
2101	done
2102
2103	fi
2104
2105	IGCM_debug_Print 1 "sys Curie : execution command is "
2106	IGCM_debug_Print 1 "$EXECUTION"
2107
2108	IGCM_debug_PopStack "IGCM_sys_build_execution_scripts"
2109	}
2110
2111	############################################################
2112	# Check of space available on temporary filesytems
2113	function IGCM_sys_check_quota {
2114	IGCM_debug_PushStack "IGCM_sys_check_quota"
2115	if ( $DEBUG_sys ) ; then
2116	echo "IGCM_sys_check_quota"
2117	fi
2118	# Limit of quota (in %)
2119	limit_quota=90
2120
2121	# Check of the volume
2122	volume_quota=$(ccc_quota \| grep ' scratch' \| awk '{print $2}')
2123	volume_avail=$(ccc_quota \| grep ' scratch' \| awk '{print $3}')
2124
2125	if ( [ ! X${volume_quota} = X ] && [ ! ${volume_quota} = "-" ] ) ; then
2126
2127	unit_avail=${volume_avail: -1}
2128	unit_quota=${volume_quota: -1}
2129
2130	if [ "${unit_quota}" = "*" ] ; then
2131	IGCM_debug_Print 1 "Please, check your quota of volume on scratch"
2132	IGCM_debug_Print 1 "More than 100% of your quota is used"
2133	IGCM_debug_Print 1 "Use the ccc_quota command to check"
2134	IGCM_debug_Print 1 "You must have more than 10% available to run"
2135	IGCM_debug_Exit "Not enough space to run ! STOP HERE"
2136	IGCM_debug_Verif_Exit
2137	fi
2138
2139	temp_avail=${volume_avail%%${volume_avail: -1}*}
2140	temp_quota=${volume_quota%%${volume_quota: -1}*}
2141
2142	if [ ! ${unit_avail} = ${unit_quota} ] ; then
2143
2144	# Convertion
2145	if [ ${volume_avail: -1} = "T" ] ; then
2146	(( temp_avail = temp_avail * 1000000000000 ))
2147	elif [ ${volume_avail: -1} = "G" ] ; then
2148	(( temp_avail = temp_avail * 1000000000 ))
2149	elif [ ${volume_avail: -1} = "M" ] ; then
2150	(( temp_avail = temp_avail * 1000000 ))
2151	elif [ ${volume_avail: -1} = "k" ] ; then
2152	(( temp_avail = temp_avail * 1000 ))
2153	else
2154	(( temp_avail = volume_avail ))
2155	fi
2156	if [ ${volume_quota: -1} = "T" ] ; then
2157	(( temp_quota = temp_quota * 1000000000000 ))
2158	elif [ ${volume_quota: -1} = "G" ] ; then
2159	(( temp_quota = temp_quota * 1000000000 ))
2160	elif [ ${volume_quota: -1} = "M" ] ; then
2161	(( temp_quota = temp_quota * 1000000 ))
2162	elif [ ${volume_quota: -1} = "k" ] ; then
2163	(( temp_quota = temp_quota * 1000 ))
2164	else
2165	(( temp_quota = volume_quota ))
2166	fi
2167	fi
2168
2169	quota_volume=$(echo "scale=2 ; $temp_quota/$temp_avail*100" \| bc)
2170	# echo "volume ratio is " $quota_volume
2171
2172	if [ ${quota_volume} -ge ${limit_quota} ] ; then
2173	IGCM_debug_Print 1 "Please, check your quota of volume on scratch"
2174	IGCM_debug_Print 1 "${quota_volume}% of your quota is used"
2175	IGCM_debug_Print 1 "Use the ccc_quota command to check"
2176	IGCM_debug_Print 1 "You must have more than 10% available to run"
2177	IGCM_debug_Exit "Not enough space to run ! STOP HERE"
2178	IGCM_debug_Verif_Exit
2179	fi
2180
2181	fi
2182
2183	# Check of the number of inodes
2184
2185	inode_quota=$(ccc_quota \| grep ' scratch' \| awk '{print $6}')
2186	inode_avail=$(ccc_quota \| grep ' scratch' \| awk '{print $7}')
2187
2188	if ( [ ! X${inode_quota} = X ] && [ ! ${inode_quota} = "-" ] ) ; then
2189
2190	unit_avail=${inode_avail: -1}
2191	unit_quota=${inode_quota: -1}
2192
2193	if [ "${unit_quota}" = "*" ] ; then
2194	IGCM_debug_Print 1 "Please, check your quota of inode on scratch"
2195	IGCM_debug_Print 1 "More than 100% of your quota is used"
2196	IGCM_debug_Print 1 "Use the ccc_quota command to check"
2197	IGCM_debug_Print 1 "You must have more than 10% available to run"
2198	IGCM_debug_Exit "Not enough space to run ! STOP HERE"
2199	IGCM_debug_Verif_Exit
2200	fi
2201
2202	temp_avail=${inode_avail%%${inode_avail: -1}*}
2203	temp_quota=${inode_quota%%${inode_quota: -1}*}
2204
2205	if [ ! ${unit_avail} = ${unit_quota} ] ; then
2206
2207	# Convertion
2208	if [ ${inode_avail: -1} = "T" ] ; then
2209	(( temp_avail = temp_avail * 1000000000000 ))
2210	elif [ ${inode_avail: -1} = "G" ] ; then
2211	(( temp_avail = temp_avail * 1000000000 ))
2212	elif [ ${inode_avail: -1} = "M" ] ; then
2213	(( temp_avail = temp_avail * 1000000 ))
2214	elif [ ${inode_avail: -1} = "k" ] ; then
2215	(( temp_avail = temp_avail * 1000 ))
2216	else
2217	(( temp_avail = inode_avail ))
2218	fi
2219
2220	if [ ${inode_quota: -1} = "T" ] ; then
2221	(( temp_quota = temp_quota * 1000000000000 ))
2222	elif [ ${inode_quota: -1} = "G" ] ; then
2223	(( temp_quota = temp_quota * 1000000000 ))
2224	elif [ ${inode_quota: -1} = "M" ] ; then
2225	(( temp_quota = temp_quota * 1000000 ))
2226	elif [ ${inode_quota: -1} = "k" ] ; then
2227	(( temp_quota = temp_quota * 1000 ))
2228	else
2229	(( temp_quota = inode_quota ))
2230	fi
2231	fi
2232	quota_inode=$(echo "scale=2 ; $temp_quota/$temp_avail*100" \| bc)
2233	# echo "inode ratio is " $quota_inode
2234
2235	if [ ${quota_inode} -ge ${limit_quota} ] ; then
2236	IGCM_debug_Print 1 "Please, check your quota of inode on scratch"
2237	IGCM_debug_Print 1 "${quota_inode}% of your quota is used"
2238	IGCM_debug_Print 1 "Use the ccc_quota command to check"
2239	IGCM_debug_Print 1 "You must have more than 10% available to run"
2240	IGCM_debug_Exit "Not enough space to run ! STOP HERE"
2241	IGCM_debug_Verif_Exit
2242	fi
2243	fi
2244	IGCM_debug_PopStack "IGCM_sys_check_quota"
2245	}
2246
2247	#D-#==================================================
2248	#D-function IGCM_sys_CountJobInQueue
2249	#D-* Purpose: Check if job_name is currently
2250	#D- running or in queue
2251	#D-* Examples: IGCM_sys_CountJobInQueue ${JobName} NbRun
2252	#D-
2253
2254	function IGCM_sys_CountJobInQueue {
2255	IGCM_debug_PushStack "IGCM_sys_CountJobInQueue"
2256	if ( $DEBUG_sys ) ; then
2257	echo "IGCM_sys_CountJobInQueue"
2258	fi
2259
2260	#NbRun=$( ccc_mstat -f \| grep -c ${JobName} )
2261
2262	# With -f option, the full job name is given in the last column
2263	NbRun=$( ccc_mstat -f \| gawk -v JobName=$1 'BEGIN { x=0 } ($NF~String) { x=x+1 } END { print x }' )
2264
2265	eval ${2}=${NbRun}
2266
2267	IGCM_debug_PopStack "IGCM_sys_CountJobInQueue"
2268	}
2269
2270	##############################################################
2271	# NCO OPERATOR
2272
2273	function IGCM_sys_ncap2 {
2274	IGCM_debug_PushStack "IGCM_sys_ncap2" -- $@
2275	if ( $DEBUG_sys ) ; then
2276	echo "IGCM_sys_ncap2 :" $@
2277	fi
2278
2279	typeset NB_ESSAI DELAI status i
2280	# number of tentative
2281	NB_ESSAI=3
2282	# time delay between tentative
2283	DELAI=2
2284
2285	i=0
2286	while [ $i -lt $NB_ESSAI ] ; do
2287	ncap2 "$@" > out_rsync 2>&1
2288	status=$?
2289	if [ ${status} -gt 0 ] ; then
2290	IGCM_debug_Print 2 "IGCM_sys_ncap2 : error code ${status}"
2291	cat out_rsync
2292	\rm out_rsync
2293	IGCM_debug_Print 2 "IGCM_sys_ncap2 : ${i}/${NB_ESSAI} sleep ${DELAI} seconds and try again."
2294	sleep $DELAI
2295	else
2296	\rm out_rsync
2297	break
2298	fi
2299	(( i = i + 1 ))
2300	done
2301
2302	if [ ${status} -gt 0 ] ; then
2303	echo "IGCM_sys_ncap2 : ncap2 error"
2304	IGCM_debug_Exit "ncap2"
2305	fi
2306
2307	IGCM_debug_PopStack "IGCM_sys_ncap2"
2308	}
2309
2310	function IGCM_sys_ncatted {
2311	IGCM_debug_PushStack "IGCM_sys_ncatted" -- $@
2312	if ( $DEBUG_sys ) ; then
2313	echo "IGCM_sys_ncatted :" $@
2314	fi
2315
2316	typeset NB_ESSAI DELAI status i
2317	# number of tentative
2318	NB_ESSAI=3
2319	# time delay between tentative
2320	DELAI=2
2321
2322	i=0
2323	while [ $i -lt $NB_ESSAI ] ; do
2324	ncatted "$@" > out_rsync 2>&1
2325	status=$?
2326	if [ ${status} -gt 0 ] ; then
2327	IGCM_debug_Print 2 "IGCM_sys_ncatted : error code ${status}"
2328	cat out_rsync
2329	\rm out_rsync
2330	IGCM_debug_Print 2 "IGCM_sys_ncatted : ${i}/${NB_ESSAI} sleep ${DELAI} seconds and try again."
2331	sleep $DELAI
2332	else
2333	\rm out_rsync
2334	break
2335	fi
2336	(( i = i + 1 ))
2337	done
2338
2339	if [ ${status} -gt 0 ] ; then
2340	echo "IGCM_sys_ncatted : ncatted error"
2341	IGCM_debug_Exit "ncatted"
2342	fi
2343
2344	IGCM_debug_PopStack "IGCM_sys_ncatted"
2345	}
2346
2347	function IGCM_sys_ncbo {
2348	IGCM_debug_PushStack "IGCM_sys_ncbo" -- $@
2349	if ( $DEBUG_sys ) ; then
2350	echo "IGCM_sys_ncbo :" $@
2351	fi
2352
2353	typeset NB_ESSAI DELAI status i
2354	# number of tentative
2355	NB_ESSAI=3
2356	# time delay between tentative
2357	DELAI=2
2358
2359	i=0
2360	while [ $i -lt $NB_ESSAI ] ; do
2361	ncbo $@ > out_rsync 2>&1
2362	status=$?
2363	if [ ${status} -gt 0 ] ; then
2364	IGCM_debug_Print 2 "IGCM_sys_ncbo : error code ${status}"
2365	cat out_rsync
2366	\rm out_rsync
2367	IGCM_debug_Print 2 "IGCM_sys_ncbo : ${i}/${NB_ESSAI} sleep ${DELAI} seconds and try again."
2368	sleep $DELAI
2369	else
2370	\rm out_rsync
2371	break
2372	fi
2373	(( i = i + 1 ))
2374	done
2375
2376	if [ ${status} -gt 0 ] ; then
2377	echo "IGCM_sys_ncbo : ncbo error"
2378	IGCM_debug_Exit "ncbo"
2379	fi
2380
2381	IGCM_debug_PopStack "IGCM_sys_ncbo"
2382	}
2383
2384	function IGCM_sys_ncdiff {
2385	IGCM_debug_PushStack "IGCM_sys_ncdiff" -- $@
2386	if ( $DEBUG_sys ) ; then
2387	echo "IGCM_sys_ncdiff :" $@
2388	fi
2389
2390	typeset NB_ESSAI DELAI status i
2391	# number of tentative
2392	NB_ESSAI=3
2393	# time delay between tentative
2394	DELAI=2
2395
2396	i=0
2397	while [ $i -lt $NB_ESSAI ] ; do
2398	ncdiff $@ > out_rsync 2>&1
2399	status=$?
2400	if [ ${status} -gt 0 ] ; then
2401	IGCM_debug_Print 2 "IGCM_sys_ncdiff : error code ${status}"
2402	cat out_rsync
2403	\rm out_rsync
2404	IGCM_debug_Print 2 "IGCM_sys_ncdiff : ${i}/${NB_ESSAI} sleep ${DELAI} seconds and try again."
2405	sleep $DELAI
2406	else
2407	\rm out_rsync
2408	break
2409	fi
2410	(( i = i + 1 ))
2411	done
2412
2413	if [ ${status} -gt 0 ] ; then
2414	echo "IGCM_sys_ncdiff : ncdiff error"
2415	IGCM_debug_Exit "ncdiff"
2416	fi
2417
2418	IGCM_debug_PopStack "IGCM_sys_ncdiff"
2419	}
2420
2421	function IGCM_sys_ncea {
2422	IGCM_debug_PushStack "IGCM_sys_ncea" -- $@
2423	if ( $DEBUG_sys ) ; then
2424	echo "IGCM_sys_ncea :" $@
2425	fi
2426
2427	typeset NB_ESSAI DELAI status i
2428	# number of tentative
2429	NB_ESSAI=3
2430	# time delay between tentative
2431	DELAI=2
2432
2433	i=0
2434	while [ $i -lt $NB_ESSAI ] ; do
2435	ncea $@ > out_rsync 2>&1
2436	status=$?
2437	if [ ${status} -gt 0 ] ; then
2438	IGCM_debug_Print 2 "IGCM_sys_ncea : error code ${status}"
2439	cat out_rsync
2440	\rm out_rsync
2441	IGCM_debug_Print 2 "IGCM_sys_ncea : ${i}/${NB_ESSAI} sleep ${DELAI} seconds and try again."
2442	sleep $DELAI
2443	else
2444	\rm out_rsync
2445	break
2446	fi
2447	(( i = i + 1 ))
2448	done
2449
2450	if [ ${status} -gt 0 ] ; then
2451	echo "IGCM_sys_ncea : ncea error"
2452	IGCM_debug_Exit "ncea"
2453	fi
2454
2455	IGCM_debug_PopStack "IGCM_sys_ncea"
2456	}
2457
2458	function IGCM_sys_ncecat {
2459	IGCM_debug_PushStack "IGCM_sys_ncecat" -- $@
2460	if ( $DEBUG_sys ) ; then
2461	echo "IGCM_sys_ncecat :" $@
2462	fi
2463
2464	typeset NB_ESSAI DELAI status i
2465	# number of tentative
2466	NB_ESSAI=3
2467	# time delay between tentative
2468	DELAI=2
2469
2470	i=0
2471	while [ $i -lt $NB_ESSAI ] ; do
2472	ncecat $@ > out_rsync 2>&1
2473	status=$?
2474	if [ ${status} -gt 0 ] ; then
2475	IGCM_debug_Print 2 "IGCM_sys_ncecat : error code ${status}"
2476	cat out_rsync
2477	\rm out_rsync
2478	IGCM_debug_Print 2 "IGCM_sys_ncecat : ${i}/${NB_ESSAI} sleep ${DELAI} seconds and try again."
2479	sleep $DELAI
2480	else
2481	\rm out_rsync
2482	break
2483	fi
2484	(( i = i + 1 ))
2485	done
2486
2487	if [ ${status} -gt 0 ] ; then
2488	echo "IGCM_sys_ncecat : ncecat error"
2489	IGCM_debug_Exit "ncecat"
2490	fi
2491
2492	IGCM_debug_PopStack "IGCM_sys_ncecat"
2493	}
2494
2495	function IGCM_sys_ncflint {
2496	IGCM_debug_PushStack "IGCM_sys_ncflint" -- $@
2497	if ( $DEBUG_sys ) ; then
2498	echo "IGCM_sys_ncflint :" $@
2499	fi
2500
2501	typeset NB_ESSAI DELAI status i
2502	# number of tentative
2503	NB_ESSAI=3
2504	# time delay between tentative
2505	DELAI=2
2506
2507	i=0
2508	while [ $i -lt $NB_ESSAI ] ; do
2509	ncflint $@ > out_rsync 2>&1
2510	status=$?
2511	if [ ${status} -gt 0 ] ; then
2512	IGCM_debug_Print 2 "IGCM_sys_ncflint : error code ${status}"
2513	cat out_rsync
2514	\rm out_rsync
2515	IGCM_debug_Print 2 "IGCM_sys_ncflint : ${i}/${NB_ESSAI} sleep ${DELAI} seconds and try again."
2516	sleep $DELAI
2517	else
2518	\rm out_rsync
2519	break
2520	fi
2521	(( i = i + 1 ))
2522	done
2523
2524	if [ ${status} -gt 0 ] ; then
2525	echo "IGCM_sys_ncflint : ncflint error"
2526	IGCM_debug_Exit "ncflint"
2527	fi
2528
2529	IGCM_debug_PopStack "IGCM_sys_ncflint"
2530	}
2531
2532	function IGCM_sys_ncks {
2533	IGCM_debug_PushStack "IGCM_sys_ncks" -- $@
2534	if ( $DEBUG_sys ) ; then
2535	echo "IGCM_sys_ncks :" $@
2536	fi
2537
2538	typeset NB_ESSAI DELAI status i
2539	# number of tentative
2540	NB_ESSAI=3
2541	# time delay between tentative
2542	DELAI=2
2543
2544	i=0
2545	while [ $i -lt $NB_ESSAI ] ; do
2546	ncks $@ > out_rsync 2>&1
2547	status=$?
2548	if [ ${status} -gt 0 ] ; then
2549	IGCM_debug_Print 2 "IGCM_sys_ncks : error code ${status}"
2550	cat out_rsync
2551	\rm out_rsync
2552	IGCM_debug_Print 2 "IGCM_sys_ncks : ${i}/${NB_ESSAI} sleep ${DELAI} seconds and try again."
2553	sleep $DELAI
2554	else
2555	\rm out_rsync
2556	break
2557	fi
2558	(( i = i + 1 ))
2559	done
2560
2561	if [ ${status} -gt 0 ] ; then
2562	echo "IGCM_sys_ncks : ncks error"
2563	IGCM_debug_Exit "ncks"
2564	fi
2565
2566	IGCM_debug_PopStack "IGCM_sys_ncks"
2567	}
2568
2569	function IGCM_sys_ncpdq {
2570	IGCM_debug_PushStack "IGCM_sys_ncpdq" -- $@
2571	if ( $DEBUG_sys ) ; then
2572	echo "IGCM_sys_ncpdq :" $@
2573	fi
2574
2575	typeset NB_ESSAI DELAI status i
2576	# number of tentative
2577	NB_ESSAI=3
2578	# time delay between tentative
2579	DELAI=2
2580
2581	i=0
2582	while [ $i -lt $NB_ESSAI ] ; do
2583	ncpdq $@ > out_rsync 2>&1
2584	status=$?
2585	if [ ${status} -gt 0 ] ; then
2586	IGCM_debug_Print 2 "IGCM_sys_ncpdq : error code ${status}"
2587	cat out_rsync
2588	\rm out_rsync
2589	IGCM_debug_Print 2 "IGCM_sys_ncpdq : ${i}/${NB_ESSAI} sleep ${DELAI} seconds and try again."
2590	sleep $DELAI
2591	else
2592	\rm out_rsync
2593	break
2594	fi
2595	(( i = i + 1 ))
2596	done
2597
2598	if [ ${status} -gt 0 ] ; then
2599	echo "IGCM_sys_ncpdq : ncpdq error"
2600	IGCM_debug_Exit "ncpdq"
2601	fi
2602
2603	IGCM_debug_PopStack "IGCM_sys_ncpdq"
2604	}
2605
2606	function IGCM_sys_ncra {
2607	IGCM_debug_PushStack "IGCM_sys_ncra" -- $@
2608	if ( $DEBUG_sys ) ; then
2609	echo "IGCM_sys_ncra :" $@
2610	fi
2611
2612	typeset NB_ESSAI DELAI status i
2613	# number of tentative
2614	NB_ESSAI=3
2615	# time delay between tentative
2616	DELAI=2
2617
2618	i=0
2619	while [ $i -lt $NB_ESSAI ] ; do
2620	ncra $@ > out_rsync 2>&1
2621	status=$?
2622	if [ ${status} -gt 0 ] ; then
2623	IGCM_debug_Print 2 "IGCM_sys_ncra : error code ${status}"
2624	cat out_rsync
2625	\rm out_rsync
2626	IGCM_debug_Print 2 "IGCM_sys_ncra : ${i}/${NB_ESSAI} sleep ${DELAI} seconds and try again."
2627	sleep $DELAI
2628	else
2629	\rm out_rsync
2630	break
2631	fi
2632	(( i = i + 1 ))
2633	done
2634
2635	if [ ${status} -gt 0 ] ; then
2636	echo "IGCM_sys_ncra : ncra error"
2637	IGCM_debug_Exit "ncra"
2638	fi
2639
2640	IGCM_debug_PopStack "IGCM_sys_ncra"
2641	}
2642
2643	function IGCM_sys_ncrcat {
2644	IGCM_debug_PushStack "IGCM_sys_ncrcat" -- $@
2645	if ( $DEBUG_sys ) ; then
2646	echo "IGCM_sys_ncrcat :" $@
2647	fi
2648
2649	typeset NB_ESSAI DELAI status i lastArg
2650	# number of tentative
2651	NB_ESSAI=3
2652	# time delay between tentative
2653	DELAI=2
2654
2655	i=0
2656	while [ $i -lt $NB_ESSAI ] ; do
2657	ncrcat $@ > out_rsync 2>&1
2658	status=$?
2659	if [ ${status} -gt 0 ] ; then
2660	IGCM_debug_Print 2 "IGCM_sys_ncrcat : error code ${status}"
2661	cat out_rsync
2662	\rm out_rsync
2663	IGCM_debug_Print 2 "IGCM_sys_ncrcat : ${i}/${NB_ESSAI} sleep ${DELAI} seconds and try again."
2664	sleep $DELAI
2665	elif [ ! "X$( grep "WARNING Intra-file non-monotonicity" out_rsync )" = "X" ] ; then
2666	IGCM_debug_Print 2 "IGCM_sys_ncrcat : WARNING Intra-file non-monotonicity"
2667	cat out_rsync
2668	# remove files having corrupted time axis
2669	eval lastArg=\${$#}
2670	IGCM_debug_Print 2 "IGCM_sys_ncrcat : Delete ${lastArg}"
2671	\rm ${lastArg}
2672	\rm out_rsync
2673	IGCM_debug_Print 2 "IGCM_sys_ncrcat : ${i}/${NB_ESSAI} sleep ${DELAI} seconds and try again."
2674	sleep $DELAI
2675	else
2676	\rm out_rsync
2677	break
2678	fi
2679	(( i = i + 1 ))
2680	done
2681
2682	if [ ${status} -gt 0 ] ; then
2683	echo "IGCM_sys_ncrcat : ncrcat error"
2684	#IGCM_debug_Exit "ncrcat"
2685	fi
2686
2687	IGCM_debug_PopStack "IGCM_sys_ncrcat"
2688	}
2689
2690	function IGCM_sys_ncrename {
2691	IGCM_debug_PushStack "IGCM_sys_ncrename" -- $@
2692	if ( $DEBUG_sys ) ; then
2693	echo "IGCM_sys_ncrename :" $@
2694	fi
2695
2696	typeset NB_ESSAI DELAI status i
2697	# number of tentative
2698	NB_ESSAI=3
2699	# time delay between tentative
2700	DELAI=2
2701
2702	i=0
2703	while [ $i -lt $NB_ESSAI ] ; do
2704	ncrename $@ > out_rsync 2>&1
2705	status=$?
2706	if [ ${status} -gt 0 ] ; then
2707	IGCM_debug_Print 2 "IGCM_sys_ncrename : error code ${status}"
2708	cat out_rsync
2709	\rm out_rsync
2710	IGCM_debug_Print 2 "IGCM_sys_ncrename : ${i}/${NB_ESSAI} sleep ${DELAI} seconds and try again."
2711	sleep $DELAI
2712	else
2713	\rm out_rsync
2714	break
2715	fi
2716	(( i = i + 1 ))
2717	done
2718
2719	if [ ${status} -gt 0 ] ; then
2720	echo "IGCM_sys_ncrename : ncrename error"
2721	IGCM_debug_Exit "ncrename"
2722	fi
2723
2724	IGCM_debug_PopStack "IGCM_sys_ncrename"
2725	}
2726
2727	function IGCM_sys_ncwa {
2728	IGCM_debug_PushStack "IGCM_sys_ncwa" -- $@
2729	if ( $DEBUG_sys ) ; then
2730	echo "IGCM_sys_ncwa :" $@
2731	fi
2732
2733	typeset NB_ESSAI DELAI status i
2734	# number of tentative
2735	NB_ESSAI=3
2736	# time delay between tentative
2737	DELAI=2
2738
2739	i=0
2740	while [ $i -lt $NB_ESSAI ] ; do
2741	ncwa $@ > out_rsync 2>&1
2742	status=$?
2743	if [ ${status} -gt 0 ] ; then
2744	IGCM_debug_Print 2 "IGCM_sys_ncwa : error code ${status}"
2745	cat out_rsync
2746	\rm out_rsync
2747	IGCM_debug_Print 2 "IGCM_sys_ncwa : ${i}/${NB_ESSAI} sleep ${DELAI} seconds and try again."
2748	sleep $DELAI
2749	else
2750	\rm out_rsync
2751	break
2752	fi
2753	(( i = i + 1 ))
2754	done
2755
2756	if [ ${status} -gt 0 ] ; then
2757	echo "IGCM_sys_ncwa : ncwa error"
2758	IGCM_debug_Exit "ncwa"
2759	fi
2760
2761	IGCM_debug_PopStack "IGCM_sys_ncwa"
2762	}
2763
2764	##############################################################
2765	# CDO OPERATOR
2766
2767	function IGCM_sys_cdo {
2768	IGCM_debug_PushStack "IGCM_sys_cdo" -- $@
2769	if ( $DEBUG_sys ) ; then
2770	echo "IGCM_sys_cdo :" $@
2771	fi
2772
2773	typeset status
2774
2775	\cdo $@ > out_rsync 2>&1
2776	status=$?
2777	if [ ${status} -gt 0 ] ; then
2778	echo "IGCM_sys_cdo : error code ${status}"
2779	cat out_rsync
2780	\rm out_rsync
2781	IGCM_debug_PopStack "IGCM_sys_cdo"
2782	return 1
2783	else
2784	IGCM_debug_PopStack "IGCM_sys_cdo"
2785	return 0
2786	fi
2787
2788	IGCM_debug_PopStack "IGCM_sys_cdo"
2789	}

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