1 | #!/bin/ksh |
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2 | |
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3 | #************************************************************** |
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4 | # Author: Sébastien Denvil |
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5 | # Contact: Sebastien.Denvil__at__ipsl.jussieu.fr |
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6 | # $Revision:: $ Revision of last commit |
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7 | # $Author:: $ Author of last commit |
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8 | # $Date:: $ Date of last commit |
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9 | # IPSL (2006) |
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10 | # This software is governed by the CeCILL licence see libIGCM/libIGCM_CeCILL.LIC |
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11 | # |
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12 | #************************************************************** |
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13 | |
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14 | #========================================================= |
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15 | # The documentation of this file can be automatically generated |
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16 | # if you use the prefix #D- for comments to be extracted. |
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17 | # Extract with command: cat lib* | grep "^#D-" | cut -c "4-" |
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18 | #========================================================= |
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19 | |
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20 | #D-#================================================== |
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21 | #D-LibIGCM_sys for IITM IBM machine |
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22 | #D-#================================================== |
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23 | #D- |
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24 | #D- This ksh library if a layer under some usefull |
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25 | #D-environment variables and shell commands. |
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26 | #D-All those definitions depend on host particularities. |
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27 | #D-It manages a stack mechanism and test validity of operations. |
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28 | #D-All function described bellow must be prefixed by IGCM_sys. |
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29 | |
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30 | #==================================================== |
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31 | # libIGCM_sys PARAMETERS |
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32 | #==================================================== |
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33 | |
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34 | #==================================================== |
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35 | # set DEBUG_sys to true to output calls of function |
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36 | typeset -r DEBUG_sys=${DEBUG_sys:=true} |
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37 | |
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38 | #==================================================== |
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39 | # Turn in dry run mode ? (sys_Put_Rest, sys_Put_Out, sys_Get) |
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40 | typeset -r DRYRUN=${DRYRUN:=0} |
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41 | |
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42 | # YOU MUST COMPILE YOUR EXE FILES FOR DRYRUN MODE ! |
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43 | # ------------------------------------------------------------------------------------- |
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44 | # | DRYRUN= | Date computations, | sys_Get | Exe | sys_Put_Out; sys_Put_Rest | |
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45 | # | | Cp/Exe/param/files | | | | |
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46 | # | | Chmod Qsub | | | | |
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47 | # ------------------------------------------------------------------------------------- |
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48 | # | 0 | yes | yes | yes | yes | |
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49 | # ------------------------------------------------------------------------------------- |
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50 | # | 1 | yes | yes | yes | no | |
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51 | # ------------------------------------------------------------------------------------- |
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52 | # | 2 | yes | yes | no | no | |
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53 | # ------------------------------------------------------------------------------------- |
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54 | # | 3 | yes | no | no | no | |
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55 | # ------------------------------------------------------------------------------------- |
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56 | |
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57 | #===================================================== |
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58 | # Global Variables : |
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59 | #===================================================== |
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60 | # Language : "fr" or "en" |
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61 | typeset -r MYLANG="fr" |
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62 | |
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63 | #===================================================== |
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64 | # Host and user names |
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65 | # $hostname ou hostname |
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66 | typeset HOST=${HOST:=$( hostname )} |
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67 | # $username ou whoami |
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68 | typeset LOGIN=${LOGIN:=$( whoami )} |
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69 | # $hostname of the MASTER job |
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70 | ntypeset -r MASTER=iitm01 |
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71 | |
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72 | #D- |
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73 | #D-#================================================== |
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74 | #D-Program used in libIGCM |
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75 | #D-#================================================== |
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76 | |
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77 | # Submit command |
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78 | typeset SUBMIT=${SUBMIT:=/usr/lpp/LoadL/full/bin/llsubmit} |
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79 | # rsync with path |
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80 | typeset -r RSYNC=/usr/bin/rsync |
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81 | # RSYNC_opt args to rsync |
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82 | typeset -r RSYNC_opt="-va" |
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83 | # ie storage filesystem |
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84 | typeset -r STOREHOST=iitm01 |
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85 | typeset -r REMOTE_RSYNC=/usr/bin/rsync |
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86 | |
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87 | #==================================================== |
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88 | # Source default environment |
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89 | #==================================================== |
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90 | ##. /etc/profile |
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91 | |
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92 | #==================================================== |
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93 | # Set environment tools (ferret, nco, cdo) |
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94 | #==================================================== |
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95 | # Not applicable here |
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96 | |
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97 | #==================================================== |
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98 | # Host specific DIRECTORIES |
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99 | #==================================================== |
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100 | |
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101 | #==================================================== |
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102 | #- Mirror libIGCM from iitm to a post-processing machine |
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103 | typeset -r MirrorlibIGCM=${MirrorlibIGCM:=false} |
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104 | |
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105 | #==================================================== |
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106 | #- libIGCM_POST for frontend |
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107 | typeset -r libIGCM_POST=${libIGCM} |
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108 | |
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109 | #==================================================== |
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110 | #- R_EXE (==> BIN_DIR = ${MODIPSL}/bin ) |
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111 | typeset -r R_EXE="${MODIPSL}/bin" |
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112 | |
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113 | #==================================================== |
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114 | #- SUBMIT_DIR : submission dir |
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115 | typeset SUBMIT_DIR=${SUBMIT_DIR:=${LOADL_STEP_INITDIR}} |
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116 | |
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117 | #==================================================== |
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118 | #- IN |
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119 | typeset -r R_IN=${R_IN:=/gpfs1/home/sabin} |
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120 | typeset -r R_IN_ECMWF=${R_IN_ECMWF:=/gpfs1/home/sabin} |
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121 | |
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122 | #==================================================== |
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123 | #- RUN_DIR_PATH : Temporary working directory (=> TMP) |
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124 | typeset -r RUN_DIR_PATH=${RUN_DIR_PATH:=$( echo ${HOME} | sed -e "s/gpfs1/gpfs3/" )/RUN/${LOADL_STEP_ID}} |
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125 | |
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126 | #==================================================== |
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127 | #- HOST_MPIRUN_COMMAND |
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128 | typeset -r HOST_MPIRUN_COMMAND=${HOST_MPIRUN_COMMAND:="/usr/bin/time poe"} |
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129 | |
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130 | #==================================================== |
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131 | #- Max number of arguments passed to nco operator or demigration command |
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132 | UNIX_MAX_LIMIT=360 |
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133 | |
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134 | #==================================================== |
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135 | #- set PackDefault true on curie |
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136 | PackDefault=false |
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137 | |
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138 | #==================================================== |
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139 | #- Number of core per node (max number of OpenMP task) |
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140 | NUM_COREPERNODE=2 |
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141 | |
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142 | #==================================================== |
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143 | #- Default number of MPI task for IPSL coupled model |
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144 | #- required for backward compatibility |
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145 | #- |
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146 | DEFAULT_NUM_PROC_OCE=5 |
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147 | DEFAULT_NUM_PROC_CPL=1 |
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148 | (( DEFAULT_NUM_PROC_ATM = BATCH_NUM_PROC_TOT - DEFAULT_NUM_PROC_OCE - DEFAULT_NUM_PROC_CPL )) |
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149 | DEFAULT_NUM_PROC_TOTAL=${BATCH_NUM_PROC_TOT} |
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150 | |
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151 | #D-#================================================== |
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152 | #D-function IGCM_sys_defineArchives |
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153 | #D-* Purpose: |
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154 | #D-* Define ARCHIVE : Dedicated to large files |
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155 | #D-* Define STORAGE : Dedicated to small/medium files |
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156 | #D-* Define R_OUT : Output tree located on ARCHIVE |
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157 | #D-* Define R_FIG : Output tree located on STORAGE hosting figures (monitoring and atlas, and/or small files) |
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158 | #D-* Define R_BUF : Output tree located on STORAGE hosting files waiting for rebuild or pack processes |
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159 | #D-* if SpaceName=TEST nothing special will hapen |
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160 | #D-* Examples: |
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161 | #D- |
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162 | function IGCM_sys_defineArchives { |
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163 | IGCM_debug_PushStack "IGCM_sys_defineArchives" |
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164 | |
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165 | if [ ! X${config_UserChoices_ARCHIVE} = X ]; then |
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166 | #==================================================== |
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167 | #- ARCHIVE (dedicated to large files) |
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168 | ARCHIVE=${config_UserChoices_ARCHIVE} |
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169 | else |
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170 | #==================================================== |
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171 | #- ARCHIVE (dedicated to large files) |
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172 | ARCHIVE=$( echo ${HOME} | sed -e "s/gpfs1/gpfs3/" ) |
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173 | fi |
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174 | |
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175 | if [ ! X${config_UserChoices_STORAGE} = X ]; then |
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176 | #==================================================== |
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177 | #- STORAGE (dedicated to small/medium files) |
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178 | STORAGE=${config_UserChoices_STORAGE} |
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179 | else |
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180 | #==================================================== |
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181 | #- STORAGE (dedicated to small/medium files) |
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182 | STORAGE=${ARCHIVE} |
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183 | fi |
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184 | |
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185 | # ON OBELIX NO SPECIAL CASE WHEN X${config_UserChoices_SpaceName} = XTEST |
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186 | |
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187 | #==================================================== |
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188 | #- R_OUT |
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189 | R_OUT=${ARCHIVE}/IGCM_OUT |
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190 | |
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191 | #==================================================== |
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192 | #- R_FIG (hosting figures : monitoring and atlas, and/or small files) |
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193 | R_FIG=${WORKDIR}/IGCM_OUT |
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194 | |
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195 | #==================================================== |
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196 | #- R_BUF (ONLY FOR double copy an scratch) |
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197 | R_BUF=${WORKDIR}/IGCM_OUT |
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198 | |
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199 | IGCM_debug_Print 1 "R_OUT has been defined = ${R_OUT}" |
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200 | IGCM_debug_Print 1 "R_BUF has been defined = ${R_BUF}" |
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201 | IGCM_debug_Print 1 "R_FIG has been defined = ${R_FIG}" |
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202 | |
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203 | IGCM_debug_PopStack "IGCM_sys_defineArchives" |
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204 | } |
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205 | |
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206 | #D-#================================================== |
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207 | #D-function IGCM_sys_RshMaster |
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208 | #D-* Purpose: Just a fake command to wrapp |
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209 | #D- IGCM_card call in post-treatment |
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210 | #D- Ulam do not see brodie filesystem |
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211 | #D- Cesium do not see all mercure filesystem |
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212 | #D- That's why we need this hack. |
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213 | #D-* Examples: |
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214 | #D- |
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215 | function IGCM_sys_RshMaster { |
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216 | IGCM_debug_PushStack "IGCM_sys_RshMaster" $@ |
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217 | /bin/ksh <<-EOF |
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218 | export libIGCM=${libIGCM} |
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219 | export DEBUG_debug=${DEBUG_debug} |
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220 | . ${libIGCM}/libIGCM_debug/libIGCM_debug.ksh |
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221 | . ${libIGCM}/libIGCM_card/libIGCM_card.ksh |
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222 | ${@} |
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223 | EOF |
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224 | if [ $? -gt 0 ] ; then |
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225 | echo "IGCM_sys_RshMaster : erreur." |
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226 | IGCM_debug_Exit "IGCM_sys_RshMaster" |
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227 | fi |
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228 | IGCM_debug_PopStack "IGCM_sys_RshMaster" |
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229 | } |
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230 | |
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231 | #D-#================================================== |
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232 | #D-function IGCM_sys_RshArchive |
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233 | #D-* Purpose: Archive rsh command |
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234 | #D-* Examples: |
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235 | #D- |
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236 | function IGCM_sys_RshArchive { |
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237 | IGCM_debug_PushStack "IGCM_sys_RshArchive" $@ |
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238 | /bin/ksh <<-EOF |
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239 | ${@} |
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240 | EOF |
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241 | status=$? |
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242 | if [ ${status} -gt 0 ] ; then |
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243 | IGCM_debug_Print 2 "IGCM_sys_RshArchive : command failed error code ${status}" |
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244 | IGCM_debug_Exit "IGCM_sys_RshArchive" |
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245 | fi |
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246 | IGCM_debug_PopStack "IGCM_sys_RshArchive" |
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247 | } |
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248 | |
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249 | #D-#================================================== |
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250 | #D-function IGCM_sys_RshPost |
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251 | #D-* Purpose: Post-process rsh command |
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252 | #D-* Examples: |
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253 | #D- |
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254 | function IGCM_sys_RshPost { |
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255 | IGCM_debug_PushStack "IGCM_sys_RshPost" $@ |
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256 | if ( $DEBUG_sys ) ; then |
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257 | echo "IGCM_sys_RshPost :" $@ |
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258 | fi |
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259 | |
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260 | # keep standard input to keep it for postpone if ulam don't answer |
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261 | cat >/tmp/tmp_IGCM_sys_RshPost_$$_${LOGNAME} |
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262 | |
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263 | /bin/ksh </tmp/tmp_IGCM_sys_RshPost_$$_${LOGNAME} |
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264 | if [ $? -gt 0 ] ; then |
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265 | echo "IGCM_sys_RshPost : erreur." |
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266 | IGCM_debug_Exit "IGCM_sys_RshPost" |
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267 | fi |
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268 | # delete temporary file |
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269 | \rm /tmp/tmp_IGCM_sys_RshPost_$$_${LOGNAME} |
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270 | |
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271 | IGCM_debug_PopStack "IGCM_sys_RshPost" |
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272 | } |
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273 | |
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274 | #D-#================================================== |
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275 | #D-function IGCM_sys_SendMail |
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276 | #D-* Purpose: Send mail when simulation is over |
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277 | #D-* Examples: |
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278 | #D- |
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279 | function IGCM_sys_SendMail { |
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280 | IGCM_debug_PushStack "IGCM_sys_SendMail" $@ |
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281 | if ( $DEBUG_sys ) ; then |
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282 | echo "IGCM_sys_SendMail :" $@ |
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283 | fi |
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284 | |
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285 | if [ X${1} = XAccounting ] ; then |
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286 | status=Accounting |
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287 | mailText=jobAccounting.mail |
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288 | elif ( ${ExitFlag} ) ; then |
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289 | status=failed |
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290 | mailText=jobEnd.mail |
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291 | else |
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292 | status=completed |
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293 | mailText=jobEnd.mail |
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294 | fi |
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295 | |
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296 | # Update selected mail template |
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297 | while read -r line; do |
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298 | eval echo $line >> mail.txt ; |
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299 | done < ${libIGCM}/libIGCM_sys/${mailText} |
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300 | |
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301 | if [ ! -z ${config_UserChoices_MailName} ] ; then |
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302 | mailx -s "${config_UserChoices_JobName} ${status}" ${config_UserChoices_MailName} < mail.txt |
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303 | elif [ -f ~/.forward ] ; then |
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304 | mailx -s "${config_UserChoices_JobName} ${status}" $( cat ~/.forward ) < mail.txt |
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305 | else |
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306 | mailx -s "${config_UserChoices_JobName} ${status}" ${USER} < mail.txt |
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307 | fi |
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308 | |
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309 | sleep 10 |
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310 | rm -f mail.txt |
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311 | |
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312 | IGCM_debug_PopStack "IGCM_sys_SendMail" |
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313 | } |
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314 | |
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315 | #D-#================================================== |
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316 | #D-function IGCM_sys_Mkdir |
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317 | #D-* Purpose: Master locale mkdir command |
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318 | #D-* Examples: |
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319 | #D- |
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320 | function IGCM_sys_Mkdir { |
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321 | IGCM_debug_PushStack "IGCM_sys_Mkdir" $@ |
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322 | if ( $DEBUG_sys ) ; then |
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323 | echo "IGCM_sys_Mkdir :" $@ |
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324 | fi |
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325 | if [ ! -d ${1} ]; then |
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326 | \mkdir -p $1 |
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327 | if [ $? -gt 0 ] ; then |
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328 | echo "IGCM_sys_Mkdir : erreur." |
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329 | IGCM_debug_Exit "IGCM_sys_Mkdir" |
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330 | fi |
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331 | fi |
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332 | # vérification : |
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333 | if [ ! -d ${1} ] ; then |
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334 | echo "IGCM_sys_Mkdir : erreur." |
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335 | IGCM_debug_Exit "IGCM_sys_Mkdir" |
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336 | fi |
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337 | IGCM_debug_PopStack "IGCM_sys_Mkdir" |
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338 | } |
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339 | |
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340 | #D-#================================================== |
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341 | #D-function IGCM_sys_MkdirArchive |
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342 | #D-* Purpose: Mkdir on Archive |
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343 | #D-* Examples: |
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344 | #D- |
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345 | function IGCM_sys_MkdirArchive { |
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346 | IGCM_debug_PushStack "IGCM_sys_MkdirArchive" $@ |
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347 | if ( $DEBUG_sys ) ; then |
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348 | echo "IGCM_sys_MkdirArchive :" $@ |
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349 | fi |
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350 | #- creation de repertoire sur le serveur fichier |
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351 | mkdir -p $1 |
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352 | status=$? |
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353 | |
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354 | if [ ${status} -gt 0 ] ; then |
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355 | IGCM_debug_Print 2 "IGCM_sys_MkdirArchive : mkdir failed error code ${status}" |
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356 | IGCM_debug_Exit "IGCM_sys_MkdirArchive" |
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357 | fi |
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358 | IGCM_debug_PopStack "IGCM_sys_MkdirArchive" |
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359 | } |
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360 | |
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361 | #D-#================================================== |
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362 | #D-function IGCM_sys_MkdirWork |
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363 | #D-* Purpose: Mkdir on Work |
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364 | #D-* Examples: |
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365 | #D- |
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366 | function IGCM_sys_MkdirWork { |
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367 | IGCM_debug_PushStack "IGCM_sys_MkdirWork" $@ |
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368 | if ( $DEBUG_sys ) ; then |
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369 | echo "IGCM_sys_MkdirWork :" $@ |
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370 | fi |
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371 | #- creation de repertoire sur le serveur fichier |
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372 | if [ ! -d ${1} ]; then |
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373 | \mkdir -p $1 |
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374 | if [ $? -gt 0 ] ; then |
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375 | echo "IGCM_sys_MkdirWork : erreur." |
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376 | IGCM_debug_Exit "IGCM_sys_MkdirWork" |
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377 | fi |
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378 | fi |
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379 | IGCM_debug_PopStack "IGCM_sys_MkdirWork" |
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380 | } |
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381 | |
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382 | #D-#================================================== |
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383 | #D-function IGCM_sys_Cd |
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384 | #D-* Purpose: master cd command |
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385 | #D-* Examples: |
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386 | #D- |
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387 | function IGCM_sys_Cd { |
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388 | IGCM_debug_PushStack "IGCM_sys_Cd" $@ |
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389 | if ( $DEBUG_sys ) ; then |
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390 | echo "IGCM_sys_Cd :" $@ |
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391 | fi |
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392 | \cd $1 |
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393 | if [ $? -gt 0 ] ; then |
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394 | echo "IGCM_sys_Cd : erreur." |
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395 | IGCM_debug_Exit "IGCM_sys_Cd" |
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396 | fi |
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397 | IGCM_debug_PopStack "IGCM_sys_Cd" |
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398 | } |
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399 | |
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400 | #D-#================================================== |
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401 | #D-function IGCM_sys_Chmod |
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402 | #D-* Purpose: Chmod |
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403 | #D-* Examples: |
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404 | #D- |
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405 | function IGCM_sys_Chmod { |
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406 | IGCM_debug_PushStack "IGCM_sys_Chmod" $@ |
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407 | if ( $DEBUG_sys ) ; then |
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408 | echo "IGCM_sys_Chmod :" $@ |
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409 | fi |
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410 | \chmod $@ |
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411 | if [ $? -gt 0 ] ; then |
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412 | echo "IGCM_sys_Chmod : erreur." |
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413 | IGCM_debug_Exit "IGCM_sys_Chmod" |
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414 | fi |
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415 | IGCM_debug_PopStack "IGCM_sys_Chmod" |
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416 | } |
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417 | |
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418 | #D-#================================================== |
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419 | #D-function IGCM_sys_FileSize |
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420 | #D-* Purpose: Filesize |
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421 | #D-* Examples: |
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422 | #D- |
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423 | function IGCM_sys_FileSize { |
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424 | IGCM_debug_PushStack "IGCM_sys_FileSize" $@ |
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425 | |
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426 | typeset sizeF |
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427 | set +A sizeF -- $( ls -la ${1} ) |
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428 | if [ $? -gt 0 ] ; then |
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429 | IGCM_debug_Exit "IGCM_sys_FileSize" |
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430 | fi |
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431 | eval ${2}=${sizeF[4]} |
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432 | |
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433 | IGCM_debug_PopStack "IGCM_sys_FileSize" |
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434 | } |
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435 | |
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436 | #D-#================================================== |
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437 | #D-function IGCM_sys_TestDir |
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438 | #D-* Purpose: Test Directory that must exists |
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439 | #D-* Examples: |
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440 | #D- |
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441 | function IGCM_sys_TestDir { |
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442 | IGCM_debug_PushStack "IGCM_sys_TestDir" $@ |
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443 | if ( $DEBUG_sys ) ; then |
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444 | echo "IGCM_sys_TestDir :" $@ |
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445 | fi |
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446 | typeset ExistFlag |
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447 | ExistFlag=$( [ -d $1 ] && echo 0 || echo 1 ) |
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448 | IGCM_debug_PopStack "IGCM_sys_TestDir" |
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449 | |
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450 | return ${ExistFlag} |
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451 | } |
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452 | |
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453 | #D-#================================================== |
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454 | #D-function IGCM_sys_TestDirArchive |
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455 | #D-* Purpose: Test Directory that must exists on Archive |
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456 | #D-* Examples: |
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457 | #D- |
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458 | function IGCM_sys_TestDirArchive { |
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459 | IGCM_debug_PushStack "IGCM_sys_TestDirArchive" $@ |
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460 | if ( $DEBUG_sys ) ; then |
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461 | echo "IGCM_sys_TestDirArchive :" $@ |
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462 | fi |
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463 | typeset ExistFlag |
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464 | ExistFlag=$( IGCM_sys_RshArchive "[ -d $1 ] && echo 0 || echo 1" ) |
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465 | IGCM_debug_PopStack "IGCM_sys_TestDirArchive" |
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466 | return ${ExistFlag} |
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467 | } |
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468 | |
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469 | #D-#================================================== |
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470 | #D-function IGCM_sys_IsFileArchived |
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471 | #D-* Purpose: Test file that must NOT EXISTS on Archive |
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472 | #D-* Examples: |
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473 | #D- |
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474 | function IGCM_sys_IsFileArchived { |
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475 | IGCM_debug_PushStack "IGCM_sys_IsFileArchived" $@ |
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476 | if ( $DEBUG_sys ) ; then |
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477 | echo "IGCM_sys_IsFileArchived :" $@ |
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478 | fi |
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479 | typeset IsArchivedFlag |
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480 | IsArchivedFlag=$( [ "X$( echo $@ | grep \/gpfs3 )" != "X" ] && echo 0 || echo 1 ) |
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481 | IGCM_debug_PopStack "IGCM_sys_IsFileArchived" |
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482 | |
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483 | return ${IsArchivedFlag} |
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484 | } |
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485 | |
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486 | #D-#================================================== |
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487 | #D-function IGCM_sys_TestFileArchive |
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488 | #D-* Purpose: Test file that must NOT EXISTS on Archive |
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489 | #D-* Examples: |
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490 | #D- |
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491 | function IGCM_sys_TestFileArchive { |
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492 | IGCM_debug_PushStack "IGCM_sys_TestFileArchive" $@ |
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493 | typeset ExistFlag |
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494 | ExistFlag=$( IGCM_sys_RshArchive "[ -f $1 ] && echo 0 || echo 1" ) |
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495 | IGCM_debug_PopStack "IGCM_sys_TestFileArchive" |
---|
496 | |
---|
497 | return ${ExistFlag} |
---|
498 | } |
---|
499 | |
---|
500 | #D-#================================================== |
---|
501 | #D-function IGCM_sys_TestFileBuffer |
---|
502 | #D-* Purpose: Test file that must NOT EXISTS on Buffer |
---|
503 | #D-* Examples: |
---|
504 | #D- |
---|
505 | function IGCM_sys_TestFileBuffer { |
---|
506 | IGCM_debug_PushStack "IGCM_sys_TestFileBuffer" $@ |
---|
507 | typeset ExistFlag |
---|
508 | ExistFlag=$( [ -f $1 ] && echo 0 || echo 1 ) |
---|
509 | IGCM_debug_PopStack "IGCM_sys_TestFileBuffer" |
---|
510 | |
---|
511 | return ${ExistFlag} |
---|
512 | } |
---|
513 | |
---|
514 | #D-#================================================== |
---|
515 | #D-function IGCM_sys_CountFileArchive |
---|
516 | #D-* Purpose: Count files on Archive filesystem |
---|
517 | #D-* Examples: |
---|
518 | #D- |
---|
519 | function IGCM_sys_CountFileArchive { |
---|
520 | IGCM_debug_PushStack "IGCM_sys_CountFileArchive" $@ |
---|
521 | #Command depends on targeted file system |
---|
522 | DEBUG_sys=false IGCM_sys_IsFileArchived $1 |
---|
523 | if [ $? = 0 ] ; then |
---|
524 | IGCM_sys_RshArchive "ls ${@} 2>/dev/null | wc -l" |
---|
525 | status=$? |
---|
526 | else |
---|
527 | ls ${@} 2>/dev/null | wc -l |
---|
528 | status=$? |
---|
529 | fi |
---|
530 | if [ ${status} -gt 0 ] ; then |
---|
531 | echo "IGCM_sys_CountFileArchive : erreur." |
---|
532 | fi |
---|
533 | IGCM_debug_PopStack "IGCM_sys_CountFileArchive" |
---|
534 | } |
---|
535 | |
---|
536 | #D-#================================================== |
---|
537 | #D-function IGCM_sys_CountFileBuffer |
---|
538 | #D-* Purpose: Count files on Scratch filesystem |
---|
539 | #D-* Examples: |
---|
540 | #D- |
---|
541 | function IGCM_sys_CountFileBuffer { |
---|
542 | IGCM_debug_PushStack "IGCM_sys_CountFileBuffer" $@ |
---|
543 | ls ${@} 2>/dev/null | wc -l |
---|
544 | if [ $? -gt 0 ] ; then |
---|
545 | echo "IGCM_sys_CountFileBuffer : erreur." |
---|
546 | fi |
---|
547 | IGCM_debug_PopStack "IGCM_sys_CountFileBuffer" |
---|
548 | } |
---|
549 | |
---|
550 | #D-#================================================== |
---|
551 | #D-function IGCM_sys_Tree |
---|
552 | #D-* Purpose: Tree directories with files on ${ARCHIVE} |
---|
553 | #D-* Examples: IGCM_sys_Tree ${R_IN} ${R_OUT} |
---|
554 | #D- |
---|
555 | function IGCM_sys_Tree { |
---|
556 | IGCM_debug_PushStack "IGCM_sys_Tree" $@ |
---|
557 | if ( $DEBUG_sys ) ; then |
---|
558 | echo "IGCM_sys_Tree :" $@ |
---|
559 | fi |
---|
560 | |
---|
561 | \tree -f $@ |
---|
562 | |
---|
563 | IGCM_debug_PopStack "IGCM_sys_Tree" |
---|
564 | } |
---|
565 | |
---|
566 | #D-#================================================== |
---|
567 | #D-function IGCM_sys_Tar |
---|
568 | #D-* Purpose: master tar command |
---|
569 | #D-* Examples: |
---|
570 | #D- |
---|
571 | function IGCM_sys_Tar { |
---|
572 | IGCM_debug_PushStack "IGCM_sys_Tar" $@ |
---|
573 | if ( $DEBUG_sys ) ; then |
---|
574 | echo "IGCM_sys_Tar :" $@ |
---|
575 | fi |
---|
576 | \tar cf $@ |
---|
577 | if [ $? -gt 0 ] ; then |
---|
578 | echo "IGCM_sys_Tar : erreur." |
---|
579 | IGCM_debug_Exit "IGCM_sys_Tar" |
---|
580 | fi |
---|
581 | IGCM_debug_PopStack "IGCM_sys_Tar" |
---|
582 | } |
---|
583 | |
---|
584 | #D-#================================================== |
---|
585 | #D-function IGCM_sys_UnTar |
---|
586 | #D-* Purpose: master un-tar command |
---|
587 | #D-* Examples: |
---|
588 | #D- |
---|
589 | function IGCM_sys_UnTar { |
---|
590 | IGCM_debug_PushStack "IGCM_sys_UnTar" $@ |
---|
591 | if ( $DEBUG_sys ) ; then |
---|
592 | echo "IGCM_sys_UnTar :" $@ |
---|
593 | fi |
---|
594 | \tar xvf $1 |
---|
595 | if [ $? -gt 0 ] ; then |
---|
596 | echo "IGCM_sys_UnTar : erreur." |
---|
597 | IGCM_debug_Exit "IGCM_sys_UnTar" |
---|
598 | fi |
---|
599 | IGCM_debug_PopStack "IGCM_sys_UnTar" |
---|
600 | } |
---|
601 | |
---|
602 | #D-#================================================== |
---|
603 | #D-function IGCM_sys_Qsub |
---|
604 | #D-* Purpose: Qsub new job |
---|
605 | #D-* Examples: |
---|
606 | #D- |
---|
607 | function IGCM_sys_Qsub { |
---|
608 | IGCM_debug_PushStack "IGCM_sys_Qsub" $@ |
---|
609 | |
---|
610 | typeset status |
---|
611 | |
---|
612 | if ( $DEBUG_sys ) ; then |
---|
613 | echo "IGCM_sys_Qsub :" $@ |
---|
614 | fi |
---|
615 | # We have to change output/error file |
---|
616 | [ ${#@} = 1 ] && REP_FOR_JOB=${SUBMIT_DIR} |
---|
617 | [ ${#@} = 2 ] && REP_FOR_JOB=${2} |
---|
618 | sed -e "s:\# \@ output *= .*:\# \@ output = ${Script_Output}:" \ |
---|
619 | -e "s:\# \@ error *= .*:\# \@ error = ${Script_Output}:" \ |
---|
620 | $1 > ${REP_FOR_JOB}/JOB_FOR_IGCM |
---|
621 | cd $REP_FOR_JOB ; /usr/lpp/LoadL/full/bin/llsubmit JOB_FOR_IGCM > /tmp/out_command.$$ 2>&1 ; status=$? ; cd - ; |
---|
622 | |
---|
623 | cat /tmp/out_command.$$ |
---|
624 | if [ ${status} -gt 0 ] ; then |
---|
625 | IGCM_debug_Print 2 "IGCM_sys_Qsub $1 : error code ${status}" |
---|
626 | IGCM_debug_Exit "IGCM_sys_Qsub" |
---|
627 | else |
---|
628 | JobID=$( gawk {'print $4'} /tmp/out_command.$$ | tail -1 | sed -e s/\"//g ) |
---|
629 | IGCM_sys_Rm ${REP_FOR_JOB}/JOB_FOR_IGCM |
---|
630 | fi |
---|
631 | IGCM_debug_PopStack "IGCM_sys_Qsub" |
---|
632 | } |
---|
633 | |
---|
634 | #D-#================================================== |
---|
635 | #D-function IGCM_sys_QsubPost |
---|
636 | #D-* Purpose: Qsub new job on scalaire |
---|
637 | #D-* Examples: |
---|
638 | #D- |
---|
639 | function IGCM_sys_QsubPost { |
---|
640 | IGCM_debug_PushStack "IGCM_sys_QsubPost" $@ |
---|
641 | |
---|
642 | typeset status |
---|
643 | |
---|
644 | if ( $DEBUG_sys ) ; then |
---|
645 | echo "IGCM_sys_QsubPost :" $@ |
---|
646 | fi |
---|
647 | # We have to change output/error file |
---|
648 | [ ${#@} = 1 ] && REP_FOR_JOB=${POST_DIR} |
---|
649 | [ ${#@} = 2 ] && REP_FOR_JOB=${2} |
---|
650 | |
---|
651 | sed -e "s:\# \@ output *= .*:\# \@ output = ${Script_Post_Output}.out:" \ |
---|
652 | -e "s:\# \@ error *= .*:\# \@ error = ${Script_Post_Output}.out:" \ |
---|
653 | ${libIGCM_POST}/$1.job > ${REP_FOR_JOB}/JOB_FOR_IGCM |
---|
654 | |
---|
655 | cd $REP_FOR_JOB ; /usr/lpp/LoadL/full/bin/llsubmit JOB_FOR_IGCM > /tmp/out_command.$$ 2>&1 ; status=$? ; cd - ; |
---|
656 | |
---|
657 | cat /tmp/out_command.$$ |
---|
658 | if [ ${status} -gt 0 ] ; then |
---|
659 | IGCM_debug_Print 2 "IGCM_sys_QsubPost $1 : error code ${status}" |
---|
660 | IGCM_debug_Exit "IGCM_sys_QsubPost" |
---|
661 | else |
---|
662 | JobID=$( gawk {'print $4'} /tmp/out_command.$$ | tail -1 | sed -e s/\"//g ) |
---|
663 | IGCM_sys_Rm ${REP_FOR_JOB}/JOB_FOR_IGCM |
---|
664 | fi |
---|
665 | IGCM_debug_PopStack "IGCM_sys_QsubPost" |
---|
666 | } |
---|
667 | |
---|
668 | #D-************************* |
---|
669 | #D- File transfer functions |
---|
670 | #D-************************* |
---|
671 | #D- |
---|
672 | |
---|
673 | #D-#================================================== |
---|
674 | #D-function IGCM_sys_Rsync_out |
---|
675 | #D-* Purpose: treat return val of rsync |
---|
676 | #D-* Examples: IGCM_sys_Rsync_out out_RET_rsync |
---|
677 | #D- Error values and explanations can depend on your system version. |
---|
678 | function IGCM_sys_Rsync_out { |
---|
679 | status=$1 |
---|
680 | if [ ! $status ] ; then |
---|
681 | echo "rsync error !" |
---|
682 | fi |
---|
683 | |
---|
684 | if [ $MYLANG = "fr" ]; then |
---|
685 | case $status in |
---|
686 | 0) return ;; |
---|
687 | 1) echo "Erreur de rsync ; RERR_SYNTAX : " |
---|
688 | echo "Erreur de syntaxe ou d'utilisation." |
---|
689 | return;; |
---|
690 | 2) echo "Erreur de rsync ; RERR_PROTOCOL : " |
---|
691 | echo "Incompatibilité de protocole." |
---|
692 | return;; |
---|
693 | 3) echo "Erreur de rsync ; RERR_FILESELECT 3" |
---|
694 | echo "Erreurs lors de la sélection des fichiers d'entrée sortie et" |
---|
695 | echo "répertoires" |
---|
696 | return;; |
---|
697 | 4) echo "Erreur de rsync ; RERR_UNSUPPORTED" |
---|
698 | echo "Action demandée non supportée : une tentative de manipulation de" |
---|
699 | echo "fichiers 64-bits sur une plate-forme qui ne les supporte pas a" |
---|
700 | echo "été faite ; ou une option qui est supportée par le client mais" |
---|
701 | echo "pas par le serveur a été spécifiée." |
---|
702 | return;; |
---|
703 | 10) echo "Erreur de rsync ; RERR_SOCKETIO" |
---|
704 | echo "Erreur dans le socket d'entrée sortie" |
---|
705 | return;; |
---|
706 | 11) echo "Erreur de rsync ; RERR_FILEIO" |
---|
707 | echo "Erreur d'entrée sortie fichier" |
---|
708 | return;; |
---|
709 | 12) echo "Erreur de rsync ; RERR_STREAMIO" |
---|
710 | echo "Erreur dans flux de donnée du protocole rsync" |
---|
711 | return;; |
---|
712 | 13) echo "Erreur de rsync ; RERR_MESSAGEIO" |
---|
713 | echo "Erreur avec les diagnostics du programme" |
---|
714 | return;; |
---|
715 | 14) echo "Erreur de rsync ; RERR_IPC" |
---|
716 | echo "Erreur dans le code IPC" |
---|
717 | return;; |
---|
718 | 20) echo "Erreur de rsync ; RERR_SIGNAL" |
---|
719 | echo "SIGUSR1 ou SIGINT reçu" |
---|
720 | return;; |
---|
721 | 21) echo "Erreur de rsync ; RERR_WAITCHILD" |
---|
722 | echo "Une erreur retournée par waitpid()" |
---|
723 | return;; |
---|
724 | 22) echo "Erreur de rsync ; RERR_MALLOC" |
---|
725 | echo "Erreur lors de l'allocation des tampons de mémoire de coeur" |
---|
726 | return;; |
---|
727 | 23) echo "" |
---|
728 | echo "Erreur fichier inexistant" |
---|
729 | return;; |
---|
730 | 30) echo "Erreur de rsync ; RERR_TIMEOUT" |
---|
731 | echo "Temps d'attente écoulé dans l'envoi/réception de données" |
---|
732 | return;; |
---|
733 | *) echo "Erreur de rsync : code de retour de rsync inconnu :" $status |
---|
734 | return;; |
---|
735 | esac |
---|
736 | elif [ $MYLANG = "en" ] ; then |
---|
737 | case $status in |
---|
738 | 0) return;; |
---|
739 | 1) echo "rsync error : Syntax or usage error " |
---|
740 | return;; |
---|
741 | 2) echo "rsync error : Protocol incompatibility " |
---|
742 | return;; |
---|
743 | 3) echo "rsync error : Errors selecting input/output files, dirs" |
---|
744 | return;; |
---|
745 | 4) echo "rsync error : Requested action not supported: an attempt" |
---|
746 | echo "was made to manipulate 64-bit files on a platform that cannot support" |
---|
747 | echo "them; or an option was specified that is supported by the client and" |
---|
748 | echo "not by the server." |
---|
749 | return;; |
---|
750 | 5) echo "rsync error : Error starting client-server protocol" |
---|
751 | return;; |
---|
752 | 10) echo "rsync error : Error in socket I/O " |
---|
753 | return;; |
---|
754 | 11) echo "rsync error : Error in file I/O " |
---|
755 | return;; |
---|
756 | 12) echo "rsync error : Error in rsync protocol data stream " |
---|
757 | return;; |
---|
758 | 13) echo "rsync error : Errors with program diagnostics " |
---|
759 | return;; |
---|
760 | 14) echo "rsync error : Error in IPC code " |
---|
761 | return;; |
---|
762 | 20) echo "rsync error : Received SIGUSR1 or SIGINT " |
---|
763 | return;; |
---|
764 | 21) echo "rsync error : Some error returned by waitpid() " |
---|
765 | return;; |
---|
766 | 22) echo "rsync error : Error allocating core memory buffers " |
---|
767 | return;; |
---|
768 | 23) echo "rsync error : Partial transfer due to error" |
---|
769 | return;; |
---|
770 | 24) echo "rsync error : Partial transfer due to vanished source files" |
---|
771 | return;; |
---|
772 | 30) echo "rsync error : Timeout in data send/receive " |
---|
773 | return;; |
---|
774 | *) echo "rsync error : return code of rsync unknown :" $status |
---|
775 | return;; |
---|
776 | esac |
---|
777 | else |
---|
778 | echo "unknown language $MYLANG." |
---|
779 | return |
---|
780 | fi |
---|
781 | } |
---|
782 | |
---|
783 | #D-#================================================== |
---|
784 | #D-function IGCM_sys_Miror_libIGCM |
---|
785 | #D-* Purpose: Mirror libIGCM PATH and lib to frontend |
---|
786 | #D-* Examples: |
---|
787 | #D- |
---|
788 | function IGCM_sys_Mirror_libIGCM { |
---|
789 | IGCM_debug_PushStack "IGCM_sys_Mirror_libIGCM" |
---|
790 | if ( $DEBUG_sys ) ; then |
---|
791 | echo "IGCM_sys_Mirror_libIGCM" |
---|
792 | fi |
---|
793 | |
---|
794 | typeset status |
---|
795 | |
---|
796 | mkdir -p ${HOME}/MIRROR/${PATHlibIGCM} |
---|
797 | |
---|
798 | echo ${RSYNC} ${RSYNC_opt} ${libIGCM} ${HOME}/MIRROR/${PATHlibIGCM} > /tmp/out_command.$$ 2>&1 |
---|
799 | ${RSYNC} ${RSYNC_opt} ${libIGCM} ${HOME}/MIRROR/${PATHlibIGCM} >> /tmp/out_command.$$ 2>&1 |
---|
800 | status=$? |
---|
801 | |
---|
802 | if [ ${status} -gt 0 ] ; then |
---|
803 | echo "IGCM_sys_Mirror_libIGCM Warning : no libIGCM on frontend." |
---|
804 | cat /tmp/out_command.$$ |
---|
805 | fi |
---|
806 | IGCM_debug_PopStack "IGCM_sys_Mirror_libIGCM" |
---|
807 | } |
---|
808 | |
---|
809 | #D-#================================================== |
---|
810 | #D-function IGCM_sys_Cp |
---|
811 | #D-* Purpose: generic cp |
---|
812 | #D-* Examples: |
---|
813 | #D- |
---|
814 | function IGCM_sys_Cp { |
---|
815 | IGCM_debug_PushStack "IGCM_sys_Cp" $@ |
---|
816 | if ( $DEBUG_sys ) ; then |
---|
817 | echo "IGCM_sys_Cp :" $@ |
---|
818 | fi |
---|
819 | |
---|
820 | typeset status |
---|
821 | |
---|
822 | echo cp $@ > /tmp/out_command.$$ 2>&1 |
---|
823 | \cp $@ >> /tmp/out_command.$$ 2>&1 |
---|
824 | status=$? |
---|
825 | |
---|
826 | if [ ${status} -gt 0 ] ; then |
---|
827 | echo "IGCM_sys_Cp : error code ${status}" |
---|
828 | cat /tmp/out_command.$$ |
---|
829 | IGCM_debug_Exit "IGCM_sys_Cp" |
---|
830 | else |
---|
831 | \rm /tmp/out_command.$$ |
---|
832 | fi |
---|
833 | IGCM_debug_PopStack "IGCM_sys_Cp" |
---|
834 | } |
---|
835 | |
---|
836 | #D-#================================================== |
---|
837 | #D-function IGCM_sys_Rm |
---|
838 | #D-* Purpose: generic rm |
---|
839 | #D-* Examples: |
---|
840 | #D- |
---|
841 | function IGCM_sys_Rm { |
---|
842 | IGCM_debug_PushStack "IGCM_sys_Rm" $@ |
---|
843 | if ( $DEBUG_sys ) ; then |
---|
844 | echo "IGCM_sys_Rm :" $@ |
---|
845 | fi |
---|
846 | |
---|
847 | typeset status |
---|
848 | |
---|
849 | echo rm $@ > /tmp/out_command.$$ 2>&1 |
---|
850 | \rm $@ >> /tmp/out_command.$$ 2>&1 |
---|
851 | status=$? |
---|
852 | |
---|
853 | if [ ${status} -gt 0 ] ; then |
---|
854 | echo "IGCM_sys_Rm : error code ${status}" |
---|
855 | cat /tmp/out_command.$$ |
---|
856 | IGCM_debug_Exit "IGCM_sys_Rm" |
---|
857 | else |
---|
858 | \rm /tmp/out_command.$$ |
---|
859 | fi |
---|
860 | IGCM_debug_PopStack "IGCM_sys_Rm" |
---|
861 | } |
---|
862 | |
---|
863 | #D-#================================================== |
---|
864 | #D-function IGCM_sys_RmRunDir |
---|
865 | #D-* Purpose: rm tmpdir (dummy function most of the time batch |
---|
866 | #D- scheduler will do the job) |
---|
867 | #D-* Examples: |
---|
868 | #D- |
---|
869 | function IGCM_sys_RmRunDir { |
---|
870 | IGCM_debug_PushStack "IGCM_sys_RmRunDir" $@ |
---|
871 | if ( $DEBUG_sys ) ; then |
---|
872 | echo "IGCM_sys_RmRunDir :" $@ |
---|
873 | fi |
---|
874 | |
---|
875 | typeset status |
---|
876 | |
---|
877 | echo rm $@ > /tmp/out_command.$$ 2>&1 |
---|
878 | \rm $@ >> /tmp/out_command.$$ 2>&1 |
---|
879 | status=$? |
---|
880 | |
---|
881 | if [ ${status} -gt 0 ] ; then |
---|
882 | echo "IGCM_sys_RmRunDir : rm error code is ${status}." |
---|
883 | cat /tmp/out_command.$$ |
---|
884 | IGCM_debug_Exit "IGCM_sys_RmRunDir" |
---|
885 | else |
---|
886 | \rm /tmp/out_command.$$ |
---|
887 | fi |
---|
888 | IGCM_debug_PopStack "IGCM_sys_RmRunDir" |
---|
889 | } |
---|
890 | |
---|
891 | #D-#================================================== |
---|
892 | #D-function IGCM_sys_Mv |
---|
893 | #D-* Purpose: generic move |
---|
894 | #D-* Examples: |
---|
895 | #D- |
---|
896 | function IGCM_sys_Mv { |
---|
897 | IGCM_debug_PushStack "IGCM_sys_Mv" $@ |
---|
898 | if ( $DEBUG_sys ) ; then |
---|
899 | echo "IGCM_sys_Mv :" $@ |
---|
900 | fi |
---|
901 | |
---|
902 | if [ $DRYRUN = 0 ]; then |
---|
903 | |
---|
904 | typeset status |
---|
905 | |
---|
906 | echo mv $@ > /tmp/out_command.$$ 2>&1 |
---|
907 | \mv $@ >> /tmp/out_command.$$ 2>&1 |
---|
908 | status=$? |
---|
909 | |
---|
910 | if [ ${status} -gt 0 ] ; then |
---|
911 | echo "IGCM_sys_Mv : error code ${status}" |
---|
912 | cat /tmp/out_command.$$ |
---|
913 | IGCM_debug_Exit "IGCM_sys_Mv" |
---|
914 | else |
---|
915 | \rm /tmp/out_command.$$ |
---|
916 | fi |
---|
917 | fi |
---|
918 | |
---|
919 | IGCM_debug_PopStack "IGCM_sys_Mv" |
---|
920 | } |
---|
921 | |
---|
922 | #D-#================================================== |
---|
923 | #D-function IGCM_sys_Put_Dir |
---|
924 | #D-* Purpose: Copy a complete directory on $(ARCHIVE) |
---|
925 | #D-* Examples: |
---|
926 | #D- |
---|
927 | function IGCM_sys_Put_Dir { |
---|
928 | IGCM_debug_PushStack "IGCM_sys_Put_Dir" $@ |
---|
929 | if ( $DEBUG_sys ) ; then |
---|
930 | echo "IGCM_sys_Put_Dir :" $@ |
---|
931 | fi |
---|
932 | if [ $DRYRUN = 0 ]; then |
---|
933 | if [ ! -d ${1} ] ; then |
---|
934 | echo "WARNING : IGCM_sys_Put_Dir ${1} DOES NOT EXIST ." |
---|
935 | IGCM_debug_PopStack "IGCM_sys_Put_Dir" |
---|
936 | return |
---|
937 | fi |
---|
938 | |
---|
939 | typeset status |
---|
940 | |
---|
941 | # Only if we use rsync |
---|
942 | #IGCM_sys_TestDirArchive $( dirname $2 ) |
---|
943 | # |
---|
944 | #USUAL WAY |
---|
945 | \cp -r $1 $2 > /tmp/out_command.$$ 2>&1 |
---|
946 | status=$? |
---|
947 | |
---|
948 | if [ ${status} -gt 0 ] ; then |
---|
949 | IGCM_debug_Print 2 "IGCM_sys_Put_Dir : cp failed error code ${status}" |
---|
950 | cat /tmp/out_command.$$ |
---|
951 | IGCM_debug_Exit "IGCM_sys_Put_Dir" |
---|
952 | else |
---|
953 | \rm /tmp/out_command.$$ |
---|
954 | fi |
---|
955 | fi |
---|
956 | IGCM_debug_PopStack "IGCM_sys_Put_Dir" |
---|
957 | } |
---|
958 | |
---|
959 | #D-#================================================== |
---|
960 | #D-function IGCM_sys_Get_Dir |
---|
961 | #D-* Purpose: Copy a complete directory from ${ARCHIVE} |
---|
962 | #D-* Examples: |
---|
963 | #D- |
---|
964 | function IGCM_sys_Get_Dir { |
---|
965 | IGCM_debug_PushStack "IGCM_sys_Get_Dir" $@ |
---|
966 | if ( $DEBUG_sys ) ; then |
---|
967 | echo "IGCM_sys_Get_Dir :" $@ |
---|
968 | fi |
---|
969 | if [ $DRYRUN = 0 ]; then |
---|
970 | if [ ! -d ${1} ] ; then |
---|
971 | echo "WARNING : IGCM_sys_Get_Dir ${1} DOES NOT EXIST ." |
---|
972 | IGCM_debug_PopStack "IGCM_sys_Get_Dir" |
---|
973 | return |
---|
974 | fi |
---|
975 | |
---|
976 | typeset status |
---|
977 | |
---|
978 | #USUAL WAY |
---|
979 | \cp -ur $1 $2 > /tmp/out_command.$$ 2>&1 |
---|
980 | status=$? |
---|
981 | |
---|
982 | if [ ${status} -gt 0 ] ; then |
---|
983 | IGCM_debug_Print 2 "IGCM_sys_Get_Dir : cp failed error code ${status}" |
---|
984 | cat /tmp/out_command.$$ |
---|
985 | IGCM_debug_Exit "IGCM_sys_Get_Dir" |
---|
986 | else |
---|
987 | \rm /tmp/out_command.$$ |
---|
988 | fi |
---|
989 | fi |
---|
990 | IGCM_debug_PopStack "IGCM_sys_Get_Dir" |
---|
991 | } |
---|
992 | |
---|
993 | #D-#================================================== |
---|
994 | #D-function IGCM_sys_Get_Master |
---|
995 | #D-* Purpose: Copy a complete directory from MASTER filesystem |
---|
996 | #D-* Examples: |
---|
997 | #D- |
---|
998 | function IGCM_sys_Get_Master { |
---|
999 | IGCM_debug_PushStack "IGCM_sys_Get_Master" $@ |
---|
1000 | if ( $DEBUG_sys ) ; then |
---|
1001 | echo "IGCM_sys_Get_Master :" $@ |
---|
1002 | fi |
---|
1003 | if [ $DRYRUN = 0 ]; then |
---|
1004 | if ( [ ! -d ${1} ] && [ ! -f ${1} ] ) ; then |
---|
1005 | echo "WARNING : IGCM_sys_Get_Master ${1} DOES NOT EXIST ." |
---|
1006 | IGCM_debug_PopStack "IGCM_sys_Get_Master" |
---|
1007 | return |
---|
1008 | fi |
---|
1009 | |
---|
1010 | typeset NB_ESSAI DELAI status i |
---|
1011 | # number of tentative |
---|
1012 | NB_ESSAI=3 |
---|
1013 | # time delay between tentative |
---|
1014 | DELAI=2 |
---|
1015 | |
---|
1016 | i=0 |
---|
1017 | while [ $i -lt $NB_ESSAI ] ; do |
---|
1018 | \cp -urL $1 $2 > /tmp/out_command.$$ 2>&1 |
---|
1019 | status=$? |
---|
1020 | if [ ${status} -gt 0 ]; then |
---|
1021 | IGCM_debug_Print 2 "IGCM_sys_Get_Master : cp failed error code ${status} ${i}/${NB_ESSAI}" |
---|
1022 | IGCM_debug_Print 2 "IGCM_sys_Get_Master : sleep ${DELAI} seconds and try again." |
---|
1023 | sleep $DELAI |
---|
1024 | else |
---|
1025 | break |
---|
1026 | fi |
---|
1027 | (( i = i + 1 )) |
---|
1028 | done |
---|
1029 | |
---|
1030 | if [ ${status} -gt 0 ] ; then |
---|
1031 | echo "IGCM_sys_Get_Master : error." |
---|
1032 | cat /tmp/out_command.$$ |
---|
1033 | IGCM_debug_Exit "IGCM_sys_Get_Master" |
---|
1034 | else |
---|
1035 | \rm /tmp/out_command.$$ |
---|
1036 | fi |
---|
1037 | fi |
---|
1038 | IGCM_debug_PopStack "IGCM_sys_Get_Master" |
---|
1039 | } |
---|
1040 | |
---|
1041 | #==================================================== |
---|
1042 | #- Call IGCM_sys_Mirror_libIGCM now ! |
---|
1043 | if ( $MirrorlibIGCM ) ; then |
---|
1044 | IGCM_sys_Mirror_libIGCM |
---|
1045 | fi |
---|
1046 | |
---|
1047 | #D-#================================================== |
---|
1048 | #D-function IGCM_sys_Put_Rest |
---|
1049 | #D-* Purpose: Put computied restarts on ${ARCHIVE}. |
---|
1050 | #D- File and target directory must exist. |
---|
1051 | #D-* Examples: |
---|
1052 | #D- |
---|
1053 | function IGCM_sys_Put_Rest { |
---|
1054 | IGCM_debug_PushStack "IGCM_sys_Put_Rest" $@ |
---|
1055 | if ( $DEBUG_sys ) ; then |
---|
1056 | echo "IGCM_sys_Put_Rest :" $@ |
---|
1057 | fi |
---|
1058 | if [ $DRYRUN = 0 ]; then |
---|
1059 | if [ ! -f ${1} ] ; then |
---|
1060 | echo "ERROR : IGCM_sys_Put_Rest ${1} DOES NOT EXIST ." |
---|
1061 | IGCM_debug_Exit "IGCM_sys_Put_Rest" |
---|
1062 | fi |
---|
1063 | |
---|
1064 | typeset status |
---|
1065 | # |
---|
1066 | if [ X${JobType} = XRUN ] ; then |
---|
1067 | IGCM_sys_Chmod 444 ${1} |
---|
1068 | fi |
---|
1069 | # |
---|
1070 | # Only if we use rsync |
---|
1071 | #IGCM_sys_MkdirArchive $( dirname $2 ) |
---|
1072 | # |
---|
1073 | #USUAL WAY |
---|
1074 | \cp $1 $2 > /tmp/out_command.$$ 2>&1 |
---|
1075 | status=$? |
---|
1076 | |
---|
1077 | if [ ${status} -gt 0 ] ; then |
---|
1078 | echo "IGCM_sys_Put_Rest : cp failed error code ${status}" |
---|
1079 | cat /tmp/out_command.$$ |
---|
1080 | IGCM_debug_Exit "IGCM_sys_Put_Rest" |
---|
1081 | else |
---|
1082 | \rm /tmp/out_command.$$ |
---|
1083 | fi |
---|
1084 | fi |
---|
1085 | IGCM_debug_PopStack "IGCM_sys_Put_Rest" |
---|
1086 | } |
---|
1087 | |
---|
1088 | #D-#================================================== |
---|
1089 | #D-function IGCM_sys_PutBuffer_Rest |
---|
1090 | #D-* Purpose: Put computied restarts on ${SCRATCHDIR}. |
---|
1091 | #D- File and target directory must exist. |
---|
1092 | #D-* Examples: |
---|
1093 | #D- |
---|
1094 | function IGCM_sys_PutBuffer_Rest { |
---|
1095 | IGCM_debug_PushStack "IGCM_sys_PutBuffer_Rest" $@ |
---|
1096 | if ( $DEBUG_sys ) ; then |
---|
1097 | echo "IGCM_sys_PutBuffer_Rest :" $@ |
---|
1098 | fi |
---|
1099 | if [ $DRYRUN = 0 ]; then |
---|
1100 | if [ ! -f ${1} ] ; then |
---|
1101 | echo "ERROR : IGCM_sys_PutBuffer_Rest ${1} DOES NOT EXIST ." |
---|
1102 | IGCM_debug_Exit "IGCM_sys_PutBuffer_Rest" |
---|
1103 | fi |
---|
1104 | |
---|
1105 | typeset status |
---|
1106 | # |
---|
1107 | if [ X${JobType} = XRUN ] ; then |
---|
1108 | IGCM_sys_Chmod 444 ${1} |
---|
1109 | fi |
---|
1110 | |
---|
1111 | # |
---|
1112 | # USUAL WAY |
---|
1113 | \cp $1 $2 > /tmp/out_command.$$ 2>&1 |
---|
1114 | status=$? |
---|
1115 | |
---|
1116 | if [ ${status} -gt 0 ] ; then |
---|
1117 | echo "IGCM_sys_PutBuffer_Rest : error code ${status}" |
---|
1118 | [ -f ${2} ] && ls -l ${2} |
---|
1119 | [ -f ${2}/${1} ] && ls -l ${2}/${1} |
---|
1120 | cat /tmp/out_command.$$ |
---|
1121 | IGCM_debug_Exit "IGCM_sys_PutBuffer_Rest" |
---|
1122 | else |
---|
1123 | \rm /tmp/out_command.$$ |
---|
1124 | fi |
---|
1125 | fi |
---|
1126 | IGCM_debug_PopStack "IGCM_sys_PutBuffer_Rest" |
---|
1127 | } |
---|
1128 | |
---|
1129 | #D-#================================================== |
---|
1130 | #D-function IGCM_sys_PrepareTaredRestart |
---|
1131 | #D-* Purpose: Prepare tared restart to be access by computing job. Identity here. |
---|
1132 | #D-* Examples: |
---|
1133 | #D- |
---|
1134 | function IGCM_sys_PrepareTaredRestart { |
---|
1135 | IGCM_debug_PushStack "IGCM_sys_PrepareTaredRestart" $@ |
---|
1136 | |
---|
1137 | IGCM_debug_PopStack "IGCM_sys_PrepareTaredRestart" |
---|
1138 | } |
---|
1139 | |
---|
1140 | #D-#================================================== |
---|
1141 | #D-function IGCM_sys_Put_Out |
---|
1142 | #D-* Purpose: Copy a file on ${ARCHIVE} after having chmod it in readonly |
---|
1143 | #D-* Examples: |
---|
1144 | #D- |
---|
1145 | function IGCM_sys_Put_Out { |
---|
1146 | IGCM_debug_PushStack "IGCM_sys_Put_Out" $@ |
---|
1147 | if ( $DEBUG_sys ) ; then |
---|
1148 | echo "IGCM_sys_Put_Out :" $@ |
---|
1149 | fi |
---|
1150 | |
---|
1151 | typeset status |
---|
1152 | |
---|
1153 | if [ $DRYRUN = 0 ]; then |
---|
1154 | if [ ! -f ${1} ] ; then |
---|
1155 | echo "WARNING : IGCM_sys_Put_Out ${1} DOES NOT EXIST ." |
---|
1156 | IGCM_debug_PopStack "IGCM_sys_Put_Out" |
---|
1157 | return 1 |
---|
1158 | fi |
---|
1159 | # |
---|
1160 | IGCM_sys_MkdirArchive $( dirname $2 ) |
---|
1161 | # |
---|
1162 | if [ X${JobType} = XRUN ] ; then |
---|
1163 | if [ X${3} = X ] ; then |
---|
1164 | IGCM_sys_Chmod 444 ${1} |
---|
1165 | fi |
---|
1166 | fi |
---|
1167 | # |
---|
1168 | #USUAL WAY |
---|
1169 | \cp $1 $2 > /tmp/out_command.$$ 2>&1 |
---|
1170 | status=$? |
---|
1171 | |
---|
1172 | if [ ${status} -gt 0 ] ; then |
---|
1173 | IGCM_debug_Print 2 "IGCM_sys_Put_Out : cp failed error code ${status}" |
---|
1174 | cat /tmp/out_command.$$ |
---|
1175 | IGCM_debug_Exit "IGCM_sys_Put_Out" |
---|
1176 | else |
---|
1177 | \rm /tmp/out_command.$$ |
---|
1178 | fi |
---|
1179 | fi |
---|
1180 | IGCM_debug_PopStack "IGCM_sys_Put_Out" |
---|
1181 | return 0 |
---|
1182 | } |
---|
1183 | |
---|
1184 | #D-#================================================== |
---|
1185 | #D-function IGCM_sys_PutBuffer_Out |
---|
1186 | #D-* Purpose: Copy a file on ${WORKDIR} after having chmod it in readonly |
---|
1187 | #D-* Examples: |
---|
1188 | #D- |
---|
1189 | function IGCM_sys_PutBuffer_Out { |
---|
1190 | IGCM_debug_PushStack "IGCM_sys_PutBuffer_Out" $@ |
---|
1191 | if ( $DEBUG_sys ) ; then |
---|
1192 | echo "IGCM_sys_PutBuffer_Out :" $@ |
---|
1193 | fi |
---|
1194 | |
---|
1195 | typeset NB_ESSAI DELAI status i exist skip |
---|
1196 | |
---|
1197 | # number of tentative |
---|
1198 | NB_ESSAI=3 |
---|
1199 | # time delay between tentative |
---|
1200 | DELAI=2 |
---|
1201 | |
---|
1202 | if [ $DRYRUN = 0 ]; then |
---|
1203 | if [ ! -f ${1} ] ; then |
---|
1204 | echo "WARNING : IGCM_sys_PutBuffer_Out ${1} DOES NOT EXIST ." |
---|
1205 | IGCM_debug_PopStack "IGCM_sys_PutBuffer_Out" |
---|
1206 | return 1 |
---|
1207 | fi |
---|
1208 | # |
---|
1209 | IGCM_sys_Mkdir $( dirname $2 ) |
---|
1210 | # |
---|
1211 | |
---|
1212 | exist=false |
---|
1213 | skip=false |
---|
1214 | if [ -f $2 ] ; then |
---|
1215 | IGCM_debug_Print 1 "$2 already exist" |
---|
1216 | exist=true |
---|
1217 | if [ "X$( diff $1 $2 )" = X ] ; then |
---|
1218 | IGCM_debug_Print 2 "$1 and $2 are the same file, we skip the copy" |
---|
1219 | status=0 |
---|
1220 | skip=true |
---|
1221 | else |
---|
1222 | IGCM_debug_Print 2 "$1 and $2 are not the same file, we force the copy" |
---|
1223 | skip=false |
---|
1224 | fi |
---|
1225 | fi |
---|
1226 | # |
---|
1227 | if ( [ X${exist} = Xtrue ] && [ X${skip} = Xfalse ] ) ; then |
---|
1228 | IGCM_sys_Chmod u+w $2 |
---|
1229 | fi |
---|
1230 | |
---|
1231 | if [ X${skip} = Xfalse ] ; then |
---|
1232 | i=0 |
---|
1233 | while [ $i -lt $NB_ESSAI ] ; do |
---|
1234 | # USUAL WAY |
---|
1235 | \cp $1 $2 > /tmp/out_command.$$ 2>&1 |
---|
1236 | status=$? |
---|
1237 | if [ ${status} -gt 0 ]; then |
---|
1238 | IGCM_debug_Print 2 "IGCM_sys_PutBuffer_Out : cp failed error code ${status} ${i}/${NB_ESSAI}" |
---|
1239 | IGCM_debug_Print 2 "IGCM_sys_PutBuffer_Out : sleep ${DELAI} seconds and try again." |
---|
1240 | [ -f ${2} ] && ls -l ${2} |
---|
1241 | [ -f ${2}/${1} ] && ls -l ${2}/${1} |
---|
1242 | sleep $DELAI |
---|
1243 | else |
---|
1244 | break |
---|
1245 | fi |
---|
1246 | (( i = i + 1 )) |
---|
1247 | done |
---|
1248 | fi |
---|
1249 | |
---|
1250 | if [ ${status} -gt 0 ] ; then |
---|
1251 | echo "IGCM_sys_PutBuffer_Out : error." |
---|
1252 | [ -f ${2} ] && ls -l ${2} |
---|
1253 | [ -f ${2}/${1} ] && ls -l ${2}/${1} |
---|
1254 | cat /tmp/out_command.$$ |
---|
1255 | IGCM_debug_Exit "IGCM_sys_PutBuffer_Out" |
---|
1256 | else |
---|
1257 | |
---|
1258 | if [ X${JobType} = XRUN ] ; then |
---|
1259 | if [ X${3} = X ] ; then |
---|
1260 | [ -f ${2} ] && IGCM_sys_Chmod 444 ${2} |
---|
1261 | [ -f ${2}/${1} ] && IGCM_sys_Chmod 444 ${2}/${1} |
---|
1262 | fi |
---|
1263 | fi |
---|
1264 | |
---|
1265 | \rm /tmp/out_command.$$ |
---|
1266 | fi |
---|
1267 | fi |
---|
1268 | IGCM_debug_PopStack "IGCM_sys_PutBuffer_Out" |
---|
1269 | return 0 |
---|
1270 | } |
---|
1271 | |
---|
1272 | #D-#================================================== |
---|
1273 | #D-function IGCM_sys_Get |
---|
1274 | #D-* Purpose: Get a file from ${ARCHIVE} |
---|
1275 | #D-* Examples: IGCM_sys_Get myfile /destpath/myfile_with_PREFIX |
---|
1276 | #D- IGCM_sys_Get /l Array_contain_myfiles /destpath/ |
---|
1277 | function IGCM_sys_Get { |
---|
1278 | IGCM_debug_PushStack "IGCM_sys_Get" $@ |
---|
1279 | |
---|
1280 | typeset DEST status dm_liste |
---|
1281 | |
---|
1282 | if ( $DEBUG_sys ) ; then |
---|
1283 | echo "IGCM_sys_Get :" $@ |
---|
1284 | fi |
---|
1285 | if [ $DRYRUN -le 2 ]; then |
---|
1286 | if [ X${1} = X'/l' ] ; then |
---|
1287 | eval set +A dm_liste \${${2}} |
---|
1288 | else |
---|
1289 | dm_liste=${1} |
---|
1290 | fi |
---|
1291 | eval DEST=\${${#}} |
---|
1292 | |
---|
1293 | # test if the (first) file is present in the old computation : |
---|
1294 | DEBUG_sys=false IGCM_sys_IsFileArchived ${dm_liste[0]} |
---|
1295 | if [ $? = 0 ] ; then |
---|
1296 | IGCM_sys_TestFileArchive ${dm_liste[0]} |
---|
1297 | status=$? |
---|
1298 | else |
---|
1299 | IGCM_sys_TestFileBuffer ${dm_liste[0]} |
---|
1300 | status=$? |
---|
1301 | fi |
---|
1302 | |
---|
1303 | if [ ${status} -gt 0 ] ; then |
---|
1304 | echo "IGCM_sys_Get, ERROR : regular file ${dm_liste[0]} DOES NOT EXIST ." |
---|
1305 | IGCM_debug_Exit "IGCM_sys_Get" |
---|
1306 | return |
---|
1307 | fi |
---|
1308 | |
---|
1309 | #USUAL WAY |
---|
1310 | \cp ${dm_liste[*]} ${DEST} > /tmp/out_command.$$ 2>&1 |
---|
1311 | status=$? |
---|
1312 | |
---|
1313 | if [ ${status} -gt 0 ] ; then |
---|
1314 | IGCM_debug_Print 2 "IGCM_sys_Get : cp failed error code ${status}" |
---|
1315 | cat /tmp/out_command.$$ |
---|
1316 | IGCM_debug_Exit "IGCM_sys_Get" |
---|
1317 | else |
---|
1318 | \rm /tmp/out_command.$$ |
---|
1319 | fi |
---|
1320 | fi |
---|
1321 | IGCM_debug_PopStack "IGCM_sys_Get" |
---|
1322 | } |
---|
1323 | |
---|
1324 | #D-#================================================== |
---|
1325 | #D-function IGCM_sys_GetBuffer |
---|
1326 | #D-* Purpose: Get a file from ${SCRATCHDIR} |
---|
1327 | #D-* Examples: IGCM_sys_GetBuffer myfile /destpath/myfile_with_PREFIX |
---|
1328 | #D- IGCM_sys_GetBuffer /l Array_contain_myfiles /destpath/ |
---|
1329 | function IGCM_sys_GetBuffer { |
---|
1330 | IGCM_debug_PushStack "IGCM_sys_GetBuffer" $@ |
---|
1331 | |
---|
1332 | typeset DEST buf_liste target file_work |
---|
1333 | typeset NB_ESSAI DELAI status i |
---|
1334 | |
---|
1335 | if ( $DEBUG_sys ) ; then |
---|
1336 | echo "IGCM_sys_GetBuffer :" $@ |
---|
1337 | fi |
---|
1338 | |
---|
1339 | # number of tentative |
---|
1340 | NB_ESSAI=3 |
---|
1341 | # time delay between tentative |
---|
1342 | DELAI=2 |
---|
1343 | |
---|
1344 | if [ $DRYRUN -le 2 ]; then |
---|
1345 | if [ X${1} = X'/l' ] ; then |
---|
1346 | eval set +A buf_liste \${${2}} |
---|
1347 | else |
---|
1348 | eval set +A buf_liste ${1} |
---|
1349 | fi |
---|
1350 | eval DEST=\${${#}} |
---|
1351 | |
---|
1352 | #USUAL WAY |
---|
1353 | if [ X${1} = X'/l' ] ; then |
---|
1354 | for target in ${buf_liste[*]} ; do |
---|
1355 | local_file=$( basename ${target} ) |
---|
1356 | i=0 |
---|
1357 | while [ $i -lt $NB_ESSAI ] ; do |
---|
1358 | \cp ${target} ${DEST}/${local_file} >> /tmp/out_command.$$ 2>&1 |
---|
1359 | status=$? |
---|
1360 | if [ ${status} -gt 0 ]; then |
---|
1361 | IGCM_debug_Print 2 "IGCM_sys_GetBuffer : cp failed error code ${status} ${i}/${NB_ESSAI}" |
---|
1362 | IGCM_debug_Print 2 "IGCM_sys_GetBuffer : sleep ${DELAI} seconds and try again." |
---|
1363 | sleep $DELAI |
---|
1364 | else |
---|
1365 | break |
---|
1366 | fi |
---|
1367 | (( i = i + 1 )) |
---|
1368 | done |
---|
1369 | if [ ${status} -gt 0 ] ; then |
---|
1370 | echo "IGCM_sys_Get : error" |
---|
1371 | cat /tmp/out_command.$$ |
---|
1372 | \rm /tmp/out_command.$$ |
---|
1373 | IGCM_debug_Exit "IGCM_sys_GetBuffer" |
---|
1374 | else |
---|
1375 | \rm /tmp/out_command.$$ |
---|
1376 | fi |
---|
1377 | done |
---|
1378 | else |
---|
1379 | i=0 |
---|
1380 | while [ $i -lt $NB_ESSAI ] ; do |
---|
1381 | \cp ${buf_liste} ${DEST} >> /tmp/out_command.$$ 2>&1 |
---|
1382 | status=$? |
---|
1383 | if [ ${status} -gt 0 ]; then |
---|
1384 | IGCM_debug_Print 2 "IGCM_sys_GetBuffer : cp failed error code ${status} ${i}/${NB_ESSAI}" |
---|
1385 | IGCM_debug_Print 2 "IGCM_sys_GetBuffer : sleep ${DELAI} seconds and try again." |
---|
1386 | sleep $DELAI |
---|
1387 | else |
---|
1388 | break |
---|
1389 | fi |
---|
1390 | (( i = i + 1 )) |
---|
1391 | done |
---|
1392 | if [ ${status} -gt 0 ] ; then |
---|
1393 | echo "IGCM_sys_Get : error" |
---|
1394 | cat /tmp/out_command.$$ |
---|
1395 | \rm /tmp/out_command.$$ |
---|
1396 | IGCM_debug_Exit "IGCM_sys_GetBuffer" |
---|
1397 | else |
---|
1398 | \rm /tmp/out_command.$$ |
---|
1399 | fi |
---|
1400 | fi |
---|
1401 | fi |
---|
1402 | IGCM_debug_PopStack "IGCM_sys_GetBuffer" |
---|
1403 | } |
---|
1404 | |
---|
1405 | #D-#================================================== |
---|
1406 | #D-function IGCM_sys_GetDate_FichWork |
---|
1407 | #D-* Purpose: donne la date filesys d'un fichier sur le filesystem WORK |
---|
1408 | #D-* Examples: |
---|
1409 | #D- |
---|
1410 | function IGCM_sys_GetDate_FichWork { |
---|
1411 | IGCM_debug_PushStack "IGCM_sys_FichWork" $@ |
---|
1412 | if ( $DEBUG_sys ) ; then |
---|
1413 | echo "IGCM_sys_GetDate_FichWork :" $@ |
---|
1414 | fi |
---|
1415 | # donne la date filesys d'un fichier sur la machine work |
---|
1416 | IGCM_debug_PopStack "IGCM_sys_FichWork" |
---|
1417 | } |
---|
1418 | |
---|
1419 | #D-#================================================== |
---|
1420 | #D-function IGCM_sys_GetDate_FichArchive |
---|
1421 | #D-* Purpose: donne la date filesys d'un fichier sur le filesystem ARCHIVE |
---|
1422 | #D-* Examples: |
---|
1423 | #D- |
---|
1424 | function IGCM_sys_GetDate_FichArchive { |
---|
1425 | IGCM_debug_PushStack "IGCM_sys_FichArchive" $@ |
---|
1426 | if ( $DEBUG_sys ) ; then |
---|
1427 | echo "IGCM_sys_GetDate_FichArchive :" $@ |
---|
1428 | fi |
---|
1429 | IGCM_debug_PopStack "IGCM_sys_FichArchive" |
---|
1430 | } |
---|
1431 | |
---|
1432 | #D-#================================================== |
---|
1433 | #D-function IGCM_sys_Dods_Rm |
---|
1434 | #D-* Purpose: DO NOTHING ! Put ${ARCHIVE} files on DODS internet protocole. |
---|
1435 | #D-* Examples: |
---|
1436 | #D- |
---|
1437 | function IGCM_sys_Dods_Rm { |
---|
1438 | if ( $DEBUG_sys ) ; then |
---|
1439 | echo "IGCM_sys_Dods_Rm :" $@ |
---|
1440 | fi |
---|
1441 | return 0 |
---|
1442 | } |
---|
1443 | |
---|
1444 | #D-#================================================== |
---|
1445 | #D-function IGCM_sys_Dods_Cp |
---|
1446 | #D-* Purpose: Copy $(ARCHIVE) files on DODS internet protocole. |
---|
1447 | #D-* Examples: |
---|
1448 | #D- |
---|
1449 | function IGCM_sys_Dods_Cp { |
---|
1450 | if ( $DEBUG_sys ) ; then |
---|
1451 | echo "IGCM_sys_Dods_Cp :" $@ |
---|
1452 | fi |
---|
1453 | return 0 |
---|
1454 | } |
---|
1455 | |
---|
1456 | #D-#================================================== |
---|
1457 | #D-function IGCM_sys_Put_Dods |
---|
1458 | #D-* Purpose: Put ${ARCHIVE} files on DODS internet protocole. Dummy function here |
---|
1459 | #D-* Examples: |
---|
1460 | #D- |
---|
1461 | function IGCM_sys_Put_Dods { |
---|
1462 | IGCM_debug_PushStack "IGCM_sys_Put_Dods" $@ |
---|
1463 | if ( $DEBUG_sys ) ; then |
---|
1464 | echo "IGCM_sys_Put_Dods :" $@ |
---|
1465 | fi |
---|
1466 | IGCM_debug_PopStack "IGCM_sys_Put_Dods" |
---|
1467 | } |
---|
1468 | |
---|
1469 | ############################################################## |
---|
1470 | # REBUILD OPERATOR |
---|
1471 | |
---|
1472 | #D-#================================================== |
---|
1473 | #D-function IGCM_sys_sync |
---|
1474 | #D-* Purpose: flush buffer on disk (dummy function on Ada) |
---|
1475 | #D-* Examples: |
---|
1476 | #D- |
---|
1477 | function IGCM_sys_sync { |
---|
1478 | IGCM_debug_PushStack "IGCM_sys_sync" $@ |
---|
1479 | if ( $DEBUG_sys ) ; then |
---|
1480 | echo "IGCM_sys_sync :" $@ |
---|
1481 | echo "Dummy call, let the system do that." |
---|
1482 | fi |
---|
1483 | IGCM_debug_PopStack "IGCM_sys_sync" |
---|
1484 | } |
---|
1485 | |
---|
1486 | #D-#================================================== |
---|
1487 | #D-function IGCM_sys_rebuild |
---|
1488 | #D-* Purpose: rebuild parallel files |
---|
1489 | #D-* Examples: |
---|
1490 | #D- |
---|
1491 | function IGCM_sys_rebuild { |
---|
1492 | IGCM_debug_PushStack "IGCM_sys_rebuild" $@ |
---|
1493 | if ( $DEBUG_sys ) ; then |
---|
1494 | echo "IGCM_sys_rebuild :" $@ |
---|
1495 | fi |
---|
1496 | |
---|
1497 | typeset NB_ESSAI DELAI status i firstArg |
---|
1498 | # number of tentative |
---|
1499 | NB_ESSAI=3 |
---|
1500 | # time delay between tentative |
---|
1501 | DELAI=2 |
---|
1502 | |
---|
1503 | i=0 |
---|
1504 | while [ $i -lt $NB_ESSAI ] ; do |
---|
1505 | /gpfs1/home/sebastien/REBUILD/rebuild -f -o $@ > /tmp/out_command.$$ 2>&1 |
---|
1506 | status=$? |
---|
1507 | if [ ${status} -gt 0 ] ; then |
---|
1508 | IGCM_debug_Print 2 "IGCM_sys_rebuild : error code ${status}" |
---|
1509 | cat /tmp/out_command.$$ |
---|
1510 | \rm /tmp/out_command.$$ |
---|
1511 | IGCM_debug_Print 2 "IGCM_sys_rebuild : ${i}/${NB_ESSAI} sleep ${DELAI} seconds and try again." |
---|
1512 | firstArg=${1} |
---|
1513 | \rm ${firstArg} |
---|
1514 | sleep $DELAI |
---|
1515 | else |
---|
1516 | \rm /tmp/out_command.$$ |
---|
1517 | break |
---|
1518 | fi |
---|
1519 | (( i = i + 1 )) |
---|
1520 | done |
---|
1521 | |
---|
1522 | if [ ${status} -gt 0 ] ; then |
---|
1523 | echo "IGCM_sys_rebuild : rebuild error code is ${status}" |
---|
1524 | IGCM_debug_Exit "rebuild" |
---|
1525 | fi |
---|
1526 | |
---|
1527 | IGCM_debug_PopStack "IGCM_sys_rebuild" |
---|
1528 | } |
---|
1529 | |
---|
1530 | #D-#================================================== |
---|
1531 | #D-function IGCM_sys_rebuild_station |
---|
1532 | #D-* Purpose: rebuild parallel files describing station |
---|
1533 | #D-* Examples: |
---|
1534 | #D- |
---|
1535 | function IGCM_sys_rebuild_station { |
---|
1536 | IGCM_debug_PushStack "IGCM_sys_rebuild_station" $@ |
---|
1537 | typeset i list_opt file_in file_out prefix_invert list_invert |
---|
1538 | if ( $DEBUG_sys ) ; then |
---|
1539 | echo "IGCM_sys_rebuild_station :" $@ |
---|
1540 | fi |
---|
1541 | list_opt=$@ |
---|
1542 | |
---|
1543 | # Invert Axis : t,x -> x,t |
---|
1544 | # t,pres,x -> x,t,pres |
---|
1545 | # So that we can concatenate along x |
---|
1546 | i=0 |
---|
1547 | for file_in in ${list_opt} ; do |
---|
1548 | (( i = i + 1)) |
---|
1549 | [ ${i} = 1 ] && file_out=${file_in} && continue |
---|
1550 | # detect time counter and do the job only if present |
---|
1551 | var_unlim=$(ncdump -h ${file_in} | grep UNLIMITED | cut -d ' ' -f 1 | sed -e 's/^[ \t]*//' -e 's/[ \t]*$//') |
---|
1552 | if [ X${var_unlim} = Xtime_counter ] ; then |
---|
1553 | prefix_invert=$( basename ${file_in} .nc ) |
---|
1554 | IGCM_sys_ncpdq -a x,time_counter -a x,time_counter,presnivs ${file_in} ${prefix_invert}_xt.nc |
---|
1555 | list_invert[${#list_invert[*]}]=${prefix_invert}_xt.nc |
---|
1556 | fi |
---|
1557 | done |
---|
1558 | |
---|
1559 | # Concatenate |
---|
1560 | IGCM_sys_ncrcat ${list_invert[*]} histstn_xt.nc |
---|
1561 | |
---|
1562 | # Re-ivert file |
---|
1563 | IGCM_sys_ncpdq -a time_counter,x -a time_counter,presnivs,x histstn_xt.nc ${file_out} |
---|
1564 | |
---|
1565 | # Station re-ordering is too expansive to be run within libIGCM |
---|
1566 | # This is due to (ncpdq - nrcat - ncpdq) I/O sequence. |
---|
1567 | # This re-ordering must be done "in memory" by the cmorization process |
---|
1568 | # Anyway this is the best sequence using (ncpdq - nrcat - ncpdq) |
---|
1569 | # BEGIN reordering |
---|
1570 | |
---|
1571 | # Only LMDZ text output contains the exact ordering of the station. |
---|
1572 | # We isolate this in the code below: |
---|
1573 | # 0 38 -157.5000000000000 70.98591549295774 |
---|
1574 | # 0 54 27.49999999999999 67.18309859154928 |
---|
1575 | # 0 56 -62.50000000000001 82.39436619718309 |
---|
1576 | # 0 79 12.49999999999999 78.59154929577466 |
---|
1577 | # 0 116 -165.0000000000000 76.05633802816901 |
---|
1578 | # 0 117 130.0000000000000 70.98591549295774 |
---|
1579 | # 0 118 110.0000000000000 87.46478873239437 |
---|
1580 | # 1 40 4.999999999999995 51.97183098591550 |
---|
1581 | # typeset iStation iProc list_opt file_in file_out prefix_invert |
---|
1582 | # typeset -Z4 j4 |
---|
1583 | # typeset -Z3 j3 |
---|
1584 | |
---|
1585 | # unset list_opt |
---|
1586 | # set +A list_opt $@ |
---|
1587 | |
---|
1588 | # Filename after rebuild |
---|
1589 | # file_out=${list_opt[0]} |
---|
1590 | # Prefix of output files |
---|
1591 | # prefix_invert=$( basename ${file_out} .nc ) |
---|
1592 | # Number of procs |
---|
1593 | # num_proc=$( grep -i mpi_size ${PREFIX}_${Exe_Output} | wc -l ) |
---|
1594 | |
---|
1595 | # iProc=0 |
---|
1596 | # while [ ${iProc} -lt ${num_proc} ] ; do |
---|
1597 | # Array containing Station as a number |
---|
1598 | # unset proc_stn |
---|
1599 | # set +A proc_stn $( grep "iophy_mpi rank ip lon lat $iProc" ${PREFIX}_${Exe_Output} | sed -e "s/iophy_mpi rank ip lon lat //g" | gawk ' {print $2}' ) |
---|
1600 | # Number of stations produced by processor proc |
---|
1601 | # stationLast=${#proc_stn[*]} |
---|
1602 | # Proc number on 4 digits |
---|
1603 | # j4=${iProc} |
---|
1604 | # Init |
---|
1605 | # iStation=0 |
---|
1606 | # while [ ${iStation} -lt ${stationLast} ] ; do |
---|
1607 | # Station number on 3 digits |
---|
1608 | # j3=${proc_stn[${iStation}]} |
---|
1609 | # Extract station |
---|
1610 | # Invert Axis : t,x -> x,t |
---|
1611 | # t,pres,x -> x,t,pres |
---|
1612 | # So that we can concatenate along x |
---|
1613 | # IGCM_sys_ncpdq -a x,time_counter -a x,time_counter,presnivs -d x,$iStation,$iStation ${prefix_invert}_${j4}.nc ${prefix_invert}_stn_${j3}.nc |
---|
1614 | # (( iStation = iStation + 1 )) |
---|
1615 | # done |
---|
1616 | # (( iProc = iProc + 1 )) |
---|
1617 | # done |
---|
1618 | |
---|
1619 | # Concatenate all station along x |
---|
1620 | # IGCM_sys_ncrcat ${prefix_invert}_stn_???.nc ${prefix_invert}_xt.nc |
---|
1621 | |
---|
1622 | # Re-invert file |
---|
1623 | # IGCM_sys_ncpdq -a time_counter,x -a time_counter,presnivs,x ${prefix_invert}_xt.nc ${file_out} |
---|
1624 | |
---|
1625 | # END reordering |
---|
1626 | |
---|
1627 | IGCM_debug_PopStack "IGCM_sys_rebuild_station" |
---|
1628 | } |
---|
1629 | |
---|
1630 | ############################################################ |
---|
1631 | # Activate Running Environnment Variables |
---|
1632 | |
---|
1633 | #D-#================================================== |
---|
1634 | #D-function IGCM_sys_desactiv_variables |
---|
1635 | #D-* Purpose: set environement variables prior to execution |
---|
1636 | #D-* Examples: |
---|
1637 | #D- |
---|
1638 | function IGCM_sys_activ_variables { |
---|
1639 | IGCM_debug_PushStack "IGCM_sys_activ_variables" |
---|
1640 | if ( $DEBUG_sys ) ; then |
---|
1641 | echo "IGCM_sys_activ_variables" |
---|
1642 | fi |
---|
1643 | |
---|
1644 | # -------------------------------------------------------------------- |
---|
1645 | #D- MPI specifications |
---|
1646 | # -------------------------------------------------------------------- |
---|
1647 | |
---|
1648 | # -------------------------------------------------------------------- |
---|
1649 | #D- Other specifications |
---|
1650 | # -------------------------------------------------------------------- |
---|
1651 | |
---|
1652 | IGCM_debug_PopStack "IGCM_sys_activ_variables" |
---|
1653 | } |
---|
1654 | |
---|
1655 | ############################################################ |
---|
1656 | # Desactivate Running Environnment Variables |
---|
1657 | |
---|
1658 | #D-#================================================== |
---|
1659 | #D-function IGCM_sys_desactiv_variables |
---|
1660 | #D-* Purpose: unset environement variables after execution |
---|
1661 | #D-* Examples: |
---|
1662 | #D- |
---|
1663 | function IGCM_sys_desactiv_variables { |
---|
1664 | IGCM_debug_PushStack "IGCM_sys_desactiv_variables" |
---|
1665 | if ( $DEBUG_sys ) ; then |
---|
1666 | echo "IGCM_sys_desactiv_variables" |
---|
1667 | fi |
---|
1668 | # -------------------------------------------------------------------- |
---|
1669 | #D- MPI specifications |
---|
1670 | # -------------------------------------------------------------------- |
---|
1671 | |
---|
1672 | # -------------------------------------------------------------------- |
---|
1673 | #D- Other specifications |
---|
1674 | # -------------------------------------------------------------------- |
---|
1675 | |
---|
1676 | IGCM_debug_PopStack "IGCM_sys_desactiv_variables" |
---|
1677 | } |
---|
1678 | |
---|
1679 | ############################################################ |
---|
1680 | # Build MPI/OMP scripts run file (dummy function) |
---|
1681 | |
---|
1682 | #D-#================================================== |
---|
1683 | #D-function IGCM_sys_build_run_file |
---|
1684 | #D-* Purpose: build run file (deprecated) |
---|
1685 | #D-* Examples: |
---|
1686 | #D- |
---|
1687 | function IGCM_sys_build_run_file { |
---|
1688 | |
---|
1689 | IGCM_debug_Print 3 " dummy function : IGCM_sys_build_run_file " |
---|
1690 | |
---|
1691 | } |
---|
1692 | |
---|
1693 | ############################################################ |
---|
1694 | # Build MPI/OMP scripts |
---|
1695 | |
---|
1696 | #D-#================================================== |
---|
1697 | #D-function IGCM_sys_build_execution_scripts |
---|
1698 | #D-* Purpose: build execution scripts to be launch by ${HOST_MPIRUN_COMMAND} |
---|
1699 | #D-* Examples: |
---|
1700 | #D- |
---|
1701 | function IGCM_sys_build_execution_scripts |
---|
1702 | { |
---|
1703 | IGCM_debug_PushStack "IGCM_sys_build_execution_scripts" $@ |
---|
1704 | if ( $DEBUG_sys ) ; then |
---|
1705 | echo "IGCM_sys_build_execution_scripts " $@ |
---|
1706 | fi |
---|
1707 | |
---|
1708 | typeset NbNodes_Job NbProc_Job comp_proc_mpi_loc comp_proc_omp_loc mpi_count |
---|
1709 | |
---|
1710 | if [ ! -f ${SUBMIT_DIR}/Job_${config_UserChoices_JobName} ] ; then |
---|
1711 | IGCM_debug_Exit "IGCM_sys_iitm build_execution_scripts : Job_${config_UserChoices_JobName} don't exist in SUBMIT_DIR : ${SUBMIT_DIR} " |
---|
1712 | fi |
---|
1713 | |
---|
1714 | if ( ${OK_PARA_MPMD} ) ; then |
---|
1715 | |
---|
1716 | if [ -f run_file ] ; then |
---|
1717 | IGCM_sys_Rm -f run_file |
---|
1718 | fi |
---|
1719 | touch run_file |
---|
1720 | |
---|
1721 | if ( ${OK_PARA_OMP} ) ; then |
---|
1722 | # NEW : 2 Noeuds |
---|
1723 | # @ task_geometry={(0)(1,2,3)} |
---|
1724 | # Nombre de processus demandes |
---|
1725 | echo "Job_${config_UserChoices_JobName} includes task_geometry = \c" |
---|
1726 | cat ${SUBMIT_DIR}/Job_${config_UserChoices_JobName} | grep "task_geometry" | sed -e "s/[^(]*([^(]*/(/g" |
---|
1727 | echo "Job_${config_UserChoices_JobName} includes task_geometry with NbNodes = \c" |
---|
1728 | cat ${SUBMIT_DIR}/Job_${config_UserChoices_JobName} | grep "task_geometry" | sed -e "s/[^(]*([^(]*/(/g" | wc -c |
---|
1729 | NbNodes_Job=$(( $( cat ${SUBMIT_DIR}/Job_${config_UserChoices_JobName} | grep "task_geometry" | sed -e "s/[^(]*([^(]*/(/g" | wc -c ) - 1 )) |
---|
1730 | |
---|
1731 | if [ ${NbNodes_Job} -eq 0 ] ; then |
---|
1732 | IGCM_debug_Print 2 "Error in Job_${config_UserChoices_JobName} ressources : no task_geometry defined with OpenMP run." |
---|
1733 | exit 1 |
---|
1734 | fi |
---|
1735 | else |
---|
1736 | |
---|
1737 | # OLD : |
---|
1738 | # @ total_tasks = 3 |
---|
1739 | # @ environment = "BATCH_NUM_PROC_TOT=3" |
---|
1740 | # Pas d OpenMP |
---|
1741 | # @ resources = ConsumableCpus(1) |
---|
1742 | |
---|
1743 | echo "Job_${config_UserChoices_JobName} includes total_tasks = \c" |
---|
1744 | cat ${SUBMIT_DIR}/Job_${config_UserChoices_JobName} | grep "total_tasks" | sed -e "s/.*total_tasks = //" |
---|
1745 | NbProc_Job=$( cat ${SUBMIT_DIR}/Job_${config_UserChoices_JobName} | grep "total_tasks" | sed -e "s/.*total_tasks = //" ) |
---|
1746 | NbProc_Job=${NbProc_Job:=0} |
---|
1747 | if [ ${NbProc_Job} -eq 0 ] ; then |
---|
1748 | IGCM_debug_Print 2 "Error in Job_${config_UserChoices_JobName} ressources : no total_tasks defined with MPI only run." |
---|
1749 | exit 1 |
---|
1750 | fi |
---|
1751 | if ( $( egrep '^# *@ *resources *= *ConsumableCpus\(1\)' ${SUBMIT_DIR}/Job_${config_UserChoices_JobName} >/dev/null 2>&1 ) ) ; then |
---|
1752 | IGCM_debug_Print 2 "ressources = ConsumableCpus(1) line found into Job_${config_UserChoices_JobName}" |
---|
1753 | else |
---|
1754 | IGCM_debug_Print 2 "Error in Job_${config_UserChoices_JobName} ressources = line not found. Job should include resources = ConsumableCpus(1) " |
---|
1755 | exit 1 |
---|
1756 | fi |
---|
1757 | fi |
---|
1758 | |
---|
1759 | # run_file construction |
---|
1760 | |
---|
1761 | # Then first loop on the components for the coupler ie oasis |
---|
1762 | |
---|
1763 | ### the coupler ie oasis must be the first one |
---|
1764 | for comp in ${config_ListOfComponents[*]} ; do |
---|
1765 | |
---|
1766 | eval ExeNameIn=\${config_Executable_${comp}[0]} |
---|
1767 | eval ExeNameOut=\${config_Executable_${comp}[1]} |
---|
1768 | |
---|
1769 | # for CPL component only |
---|
1770 | if [ "X${comp}" = "XCPL" ] ; then |
---|
1771 | |
---|
1772 | eval comp_proc_mpi_loc=\${${comp}_PROC_MPI} |
---|
1773 | eval comp_proc_omp_loc=\${${comp}_PROC_OMP} |
---|
1774 | |
---|
1775 | if ( ${OK_PARA_MPI} ) ; then |
---|
1776 | |
---|
1777 | (( mpi_count = 1 )) |
---|
1778 | until [ ${mpi_count} -gt ${comp_proc_mpi_loc} ] ; do |
---|
1779 | if ( ${OK_PARA_OMP} ) ; then |
---|
1780 | echo "env OMP_NUM_THREADS=${comp_proc_omp_loc} ./${ExeNameOut} " >> run_file |
---|
1781 | else |
---|
1782 | echo "./${ExeNameOut}" >> run_file |
---|
1783 | fi |
---|
1784 | (( mpi_count = mpi_count + 1 )) |
---|
1785 | done |
---|
1786 | else |
---|
1787 | if ( ${OK_PARA_OMP} ) ; then |
---|
1788 | echo "env OMP_NUM_THREADS=${comp_proc_omp_loc} ./${ExeNameOut} " >> run_file |
---|
1789 | else |
---|
1790 | echo "./${ExeNameOut} " >> run_file |
---|
1791 | fi |
---|
1792 | fi |
---|
1793 | fi |
---|
1794 | done |
---|
1795 | |
---|
1796 | # Then second loop on the components |
---|
1797 | |
---|
1798 | for comp in ${config_ListOfComponents[*]} ; do |
---|
1799 | |
---|
1800 | eval ExeNameIn=\${config_Executable_${comp}[0]} |
---|
1801 | eval ExeNameOut=\${config_Executable_${comp}[1]} |
---|
1802 | |
---|
1803 | # Only if we really have an executable for the component and not the coupler ie oasis: |
---|
1804 | if ( [ "X${ExeNameOut}" != X\"\" ] && [ "X${comp}" != "XCPL" ] ) ; then |
---|
1805 | |
---|
1806 | eval comp_proc_mpi_loc=\${${comp}_PROC_MPI} |
---|
1807 | eval comp_proc_omp_loc=\${${comp}_PROC_OMP} |
---|
1808 | |
---|
1809 | if ( ${OK_PARA_MPI} ) ; then |
---|
1810 | |
---|
1811 | (( mpi_count = 1 )) |
---|
1812 | until [ ${mpi_count} -gt ${comp_proc_mpi_loc} ] ; do |
---|
1813 | if ( ${OK_PARA_OMP} ) ; then |
---|
1814 | echo "env OMP_NUM_THREADS=${comp_proc_omp_loc} ./${ExeNameOut} " >> run_file |
---|
1815 | else |
---|
1816 | echo "./${ExeNameOut}" >> run_file |
---|
1817 | fi |
---|
1818 | (( mpi_count = mpi_count + 1 )) |
---|
1819 | done |
---|
1820 | else |
---|
1821 | if ( ${OK_PARA_OMP} ) ; then |
---|
1822 | echo "env OMP_NUM_THREADS=${comp_proc_omp_loc} ./${ExeNameOut} " >> run_file |
---|
1823 | else |
---|
1824 | # to be tested : no MPI only OpenMP into MPMD mode |
---|
1825 | echo "./${ExeNameOut} " >> run_file |
---|
1826 | fi |
---|
1827 | fi |
---|
1828 | fi |
---|
1829 | done |
---|
1830 | |
---|
1831 | EXECUTION="${HOST_MPIRUN_COMMAND} -pgmmodel mpmd -cmdfile ./run_file" |
---|
1832 | |
---|
1833 | IGCM_sys_Chmod u+x run_file |
---|
1834 | if ( $DEBUG_sys ) ; then |
---|
1835 | echo "run_file contains : " |
---|
1836 | cat run_file |
---|
1837 | fi |
---|
1838 | |
---|
1839 | else # Only one executable. launch it. |
---|
1840 | |
---|
1841 | for comp in ${config_ListOfComponents[*]} ; do |
---|
1842 | |
---|
1843 | # Only if we really have an executable for the component : |
---|
1844 | eval ExeNameOut=\${config_Executable_${comp}[1]} |
---|
1845 | if ( [ "X${ExeNameOut}" != X\"\" ] && [ "X${ExeNameOut}" != "Xinca.dat" ] ) ; then |
---|
1846 | EXECUTION="${HOST_MPIRUN_COMMAND} ./${ExeNameOut}" |
---|
1847 | fi |
---|
1848 | |
---|
1849 | done |
---|
1850 | |
---|
1851 | fi |
---|
1852 | |
---|
1853 | IGCM_debug_Print 1 "sys iitm : execution command is" |
---|
1854 | IGCM_debug_Print 1 "$EXECUTION" |
---|
1855 | |
---|
1856 | IGCM_debug_PopStack "IGCM_sys_build_execution_scripts" |
---|
1857 | } |
---|
1858 | |
---|
1859 | #D-#================================================== |
---|
1860 | #D-function IGCM_sys_check_path |
---|
1861 | #D-* Purpose: check that RUN_DIR_PATH that will be removed on some machine |
---|
1862 | #D-* do not point to an important use directory. Stop immediately in that case. |
---|
1863 | #D-* Examples: |
---|
1864 | #D- |
---|
1865 | function IGCM_sys_check_path { |
---|
1866 | IGCM_debug_PushStack "IGCM_sys_check_path" |
---|
1867 | if ( $DEBUG_sys ) ; then |
---|
1868 | echo "IGCM_sys_check_path" |
---|
1869 | fi |
---|
1870 | |
---|
1871 | if ( [ X${RUN_DIR_PATH} = X${HOME} ] || [ X${RUN_DIR_PATH} = X${WORKDIR} ] || [ X${RUN_DIR_PATH} = X${ARCHIVE} ] ) ; then |
---|
1872 | IGCM_debug_Print 1 "Variable RUN_DIR_PATH is pointing to an important directory : ${RUN_DIR_PATH}" |
---|
1873 | IGCM_debug_Print 1 "Please check the RUN_DIR_PATH definition in your Job : Job_${config_UserChoices_JobName}" |
---|
1874 | IGCM_debug_Exit "This will stop the job" |
---|
1875 | fi |
---|
1876 | IGCM_debug_PopStack "IGCM_sys_check_path" |
---|
1877 | } |
---|
1878 | |
---|
1879 | #D-#================================================== |
---|
1880 | #D-function IGCM_sys_check_quota. Dummy call here |
---|
1881 | #D-* Purpose: check user quota. Stop the simulation if quota above 90% |
---|
1882 | #D-* Examples: |
---|
1883 | #D- |
---|
1884 | function IGCM_sys_check_quota { |
---|
1885 | IGCM_debug_PushStack "IGCM_sys_check_quota" |
---|
1886 | if ( $DEBUG_sys ) ; then |
---|
1887 | echo "IGCM_sys_check_quota" |
---|
1888 | fi |
---|
1889 | IGCM_debug_PopStack "IGCM_sys_check_quota" |
---|
1890 | } |
---|
1891 | |
---|
1892 | #D-#================================================== |
---|
1893 | #D-function IGCM_sys_CountJobInQueue |
---|
1894 | #D-* Purpose: Check if job_name is currently |
---|
1895 | #D- running or in queue |
---|
1896 | #D-* Examples: IGCM_sys_CountJobInQueue ${JobName} NbRun |
---|
1897 | #D- |
---|
1898 | function IGCM_sys_CountJobInQueue { |
---|
1899 | IGCM_debug_PushStack "IGCM_sys_CountJobInQueue" |
---|
1900 | if ( $DEBUG_sys ) ; then |
---|
1901 | echo "IGCM_sys_CountJobInQueue" |
---|
1902 | fi |
---|
1903 | |
---|
1904 | # Print only the full (-W) JobName (%jn) |
---|
1905 | NbRun=$( llq -W -f %jn | grep -c "$1" ) |
---|
1906 | |
---|
1907 | eval ${2}=${NbRun} |
---|
1908 | |
---|
1909 | IGCM_debug_PopStack "IGCM_sys_CountJobInQueue" |
---|
1910 | } |
---|
1911 | |
---|
1912 | ############################################################## |
---|
1913 | # NCO OPERATOR |
---|
1914 | |
---|
1915 | #D-#================================================== |
---|
1916 | #D-function IGCM_sys_ncap2 |
---|
1917 | #D-* Purpose: encapsulate ncap2 call so as to manage error code and retry |
---|
1918 | #D-* Examples: |
---|
1919 | #D- |
---|
1920 | function IGCM_sys_ncap2 { |
---|
1921 | IGCM_debug_PushStack "IGCM_sys_ncap2" $@ |
---|
1922 | if ( $DEBUG_sys ) ; then |
---|
1923 | echo "IGCM_sys_ncap2 :" $@ |
---|
1924 | fi |
---|
1925 | |
---|
1926 | typeset NB_ESSAI DELAI status i |
---|
1927 | # number of tentative |
---|
1928 | NB_ESSAI=3 |
---|
1929 | # time delay between tentative |
---|
1930 | DELAI=2 |
---|
1931 | |
---|
1932 | i=0 |
---|
1933 | while [ $i -lt $NB_ESSAI ] ; do |
---|
1934 | ncap2 -C "$@" > /tmp/out_command.$$ 2>&1 |
---|
1935 | status=$? |
---|
1936 | if [ ${status} -gt 0 ] ; then |
---|
1937 | IGCM_debug_Print 2 "IGCM_sys_ncap2 : error code ${status}" |
---|
1938 | cat /tmp/out_command.$$ |
---|
1939 | \rm /tmp/out_command.$$ |
---|
1940 | IGCM_debug_Print 2 "IGCM_sys_ncap2 : ${i}/${NB_ESSAI} sleep ${DELAI} seconds and try again." |
---|
1941 | sleep $DELAI |
---|
1942 | else |
---|
1943 | \rm /tmp/out_command.$$ |
---|
1944 | break |
---|
1945 | fi |
---|
1946 | (( i = i + 1 )) |
---|
1947 | done |
---|
1948 | |
---|
1949 | if [ ${status} -gt 0 ] ; then |
---|
1950 | echo "IGCM_sys_ncap2 : ncap2 error" |
---|
1951 | IGCM_debug_Exit "ncap2" |
---|
1952 | fi |
---|
1953 | |
---|
1954 | IGCM_debug_PopStack "IGCM_sys_ncap2" |
---|
1955 | } |
---|
1956 | |
---|
1957 | #D-#================================================== |
---|
1958 | #D-function IGCM_sys_ncatted |
---|
1959 | #D-* Purpose: encapsulate ncatted call so as to manage error code and retry |
---|
1960 | #D-* Examples: |
---|
1961 | #D- |
---|
1962 | function IGCM_sys_ncatted { |
---|
1963 | IGCM_debug_PushStack "IGCM_sys_ncatted" $@ |
---|
1964 | if ( $DEBUG_sys ) ; then |
---|
1965 | echo "IGCM_sys_ncatted :" $@ |
---|
1966 | fi |
---|
1967 | |
---|
1968 | typeset NB_ESSAI DELAI status i |
---|
1969 | # number of tentative |
---|
1970 | NB_ESSAI=3 |
---|
1971 | # time delay between tentative |
---|
1972 | DELAI=2 |
---|
1973 | |
---|
1974 | i=0 |
---|
1975 | while [ $i -lt $NB_ESSAI ] ; do |
---|
1976 | ncatted "$@" > /tmp/out_command.$$ 2>&1 |
---|
1977 | status=$? |
---|
1978 | if [ ${status} -gt 0 ] ; then |
---|
1979 | IGCM_debug_Print 2 "IGCM_sys_ncatted : error code ${status}" |
---|
1980 | cat /tmp/out_command.$$ |
---|
1981 | \rm /tmp/out_command.$$ |
---|
1982 | IGCM_debug_Print 2 "IGCM_sys_ncatted : ${i}/${NB_ESSAI} sleep ${DELAI} seconds and try again." |
---|
1983 | sleep $DELAI |
---|
1984 | else |
---|
1985 | \rm /tmp/out_command.$$ |
---|
1986 | break |
---|
1987 | fi |
---|
1988 | (( i = i + 1 )) |
---|
1989 | done |
---|
1990 | |
---|
1991 | if [ ${status} -gt 0 ] ; then |
---|
1992 | echo "IGCM_sys_ncatted : ncatted error" |
---|
1993 | IGCM_debug_Exit "ncatted" |
---|
1994 | fi |
---|
1995 | |
---|
1996 | IGCM_debug_PopStack "IGCM_sys_ncatted" |
---|
1997 | } |
---|
1998 | |
---|
1999 | #D-#================================================== |
---|
2000 | #D-function IGCM_sys_ncbo |
---|
2001 | #D-* Purpose: encapsulate ncbo call so as to manage error code and retry |
---|
2002 | #D-* Examples: |
---|
2003 | #D- |
---|
2004 | function IGCM_sys_ncbo { |
---|
2005 | IGCM_debug_PushStack "IGCM_sys_ncbo" $@ |
---|
2006 | if ( $DEBUG_sys ) ; then |
---|
2007 | echo "IGCM_sys_ncbo :" $@ |
---|
2008 | fi |
---|
2009 | |
---|
2010 | typeset NB_ESSAI DELAI status i |
---|
2011 | # number of tentative |
---|
2012 | NB_ESSAI=3 |
---|
2013 | # time delay between tentative |
---|
2014 | DELAI=2 |
---|
2015 | |
---|
2016 | i=0 |
---|
2017 | while [ $i -lt $NB_ESSAI ] ; do |
---|
2018 | ncbo -C $@ > /tmp/out_command.$$ 2>&1 |
---|
2019 | status=$? |
---|
2020 | if [ ${status} -gt 0 ] ; then |
---|
2021 | IGCM_debug_Print 2 "IGCM_sys_ncbo : error code ${status}" |
---|
2022 | cat /tmp/out_command.$$ |
---|
2023 | \rm /tmp/out_command.$$ |
---|
2024 | IGCM_debug_Print 2 "IGCM_sys_ncbo : ${i}/${NB_ESSAI} sleep ${DELAI} seconds and try again." |
---|
2025 | sleep $DELAI |
---|
2026 | else |
---|
2027 | \rm /tmp/out_command.$$ |
---|
2028 | break |
---|
2029 | fi |
---|
2030 | (( i = i + 1 )) |
---|
2031 | done |
---|
2032 | |
---|
2033 | if [ ${status} -gt 0 ] ; then |
---|
2034 | echo "IGCM_sys_ncbo : ncbo error" |
---|
2035 | IGCM_debug_Exit "ncbo" |
---|
2036 | fi |
---|
2037 | |
---|
2038 | IGCM_debug_PopStack "IGCM_sys_ncbo" |
---|
2039 | } |
---|
2040 | |
---|
2041 | #D-#================================================== |
---|
2042 | #D-function IGCM_sys_ncdif |
---|
2043 | #D-* Purpose: encapsulate ncdiff call so as to manage error code and retry |
---|
2044 | #D-* Examples: |
---|
2045 | #D- |
---|
2046 | function IGCM_sys_ncdiff { |
---|
2047 | IGCM_debug_PushStack "IGCM_sys_ncdiff" $@ |
---|
2048 | if ( $DEBUG_sys ) ; then |
---|
2049 | echo "IGCM_sys_ncdiff :" $@ |
---|
2050 | fi |
---|
2051 | |
---|
2052 | typeset NB_ESSAI DELAI status i |
---|
2053 | # number of tentative |
---|
2054 | NB_ESSAI=3 |
---|
2055 | # time delay between tentative |
---|
2056 | DELAI=2 |
---|
2057 | |
---|
2058 | i=0 |
---|
2059 | while [ $i -lt $NB_ESSAI ] ; do |
---|
2060 | ncdiff -C $@ > /tmp/out_command.$$ 2>&1 |
---|
2061 | status=$? |
---|
2062 | if [ ${status} -gt 0 ] ; then |
---|
2063 | IGCM_debug_Print 2 "IGCM_sys_ncdiff : error code ${status}" |
---|
2064 | cat /tmp/out_command.$$ |
---|
2065 | \rm /tmp/out_command.$$ |
---|
2066 | IGCM_debug_Print 2 "IGCM_sys_ncdiff : ${i}/${NB_ESSAI} sleep ${DELAI} seconds and try again." |
---|
2067 | sleep $DELAI |
---|
2068 | else |
---|
2069 | \rm /tmp/out_command.$$ |
---|
2070 | break |
---|
2071 | fi |
---|
2072 | (( i = i + 1 )) |
---|
2073 | done |
---|
2074 | |
---|
2075 | if [ ${status} -gt 0 ] ; then |
---|
2076 | echo "IGCM_sys_ncdiff : ncdiff error" |
---|
2077 | IGCM_debug_Exit "ncdiff" |
---|
2078 | fi |
---|
2079 | |
---|
2080 | IGCM_debug_PopStack "IGCM_sys_ncdiff" |
---|
2081 | } |
---|
2082 | |
---|
2083 | #D-#================================================== |
---|
2084 | #D-function IGCM_sys_ncea |
---|
2085 | #D-* Purpose: encapsulate ncea call so as to manage error code and retry |
---|
2086 | #D-* Examples: |
---|
2087 | #D- |
---|
2088 | function IGCM_sys_ncea { |
---|
2089 | IGCM_debug_PushStack "IGCM_sys_ncea" $@ |
---|
2090 | if ( $DEBUG_sys ) ; then |
---|
2091 | echo "IGCM_sys_ncea :" $@ |
---|
2092 | fi |
---|
2093 | |
---|
2094 | typeset NB_ESSAI DELAI status i |
---|
2095 | # number of tentative |
---|
2096 | NB_ESSAI=3 |
---|
2097 | # time delay between tentative |
---|
2098 | DELAI=2 |
---|
2099 | |
---|
2100 | i=0 |
---|
2101 | while [ $i -lt $NB_ESSAI ] ; do |
---|
2102 | ncea -C $@ > /tmp/out_command.$$ 2>&1 |
---|
2103 | status=$? |
---|
2104 | if [ ${status} -gt 0 ] ; then |
---|
2105 | IGCM_debug_Print 2 "IGCM_sys_ncea : error code ${status}" |
---|
2106 | cat /tmp/out_command.$$ |
---|
2107 | \rm /tmp/out_command.$$ |
---|
2108 | IGCM_debug_Print 2 "IGCM_sys_ncea : ${i}/${NB_ESSAI} sleep ${DELAI} seconds and try again." |
---|
2109 | sleep $DELAI |
---|
2110 | else |
---|
2111 | \rm /tmp/out_command.$$ |
---|
2112 | break |
---|
2113 | fi |
---|
2114 | (( i = i + 1 )) |
---|
2115 | done |
---|
2116 | |
---|
2117 | if [ ${status} -gt 0 ] ; then |
---|
2118 | echo "IGCM_sys_ncea : ncea error" |
---|
2119 | IGCM_debug_Exit "ncea" |
---|
2120 | fi |
---|
2121 | |
---|
2122 | IGCM_debug_PopStack "IGCM_sys_ncea" |
---|
2123 | } |
---|
2124 | |
---|
2125 | #D-#================================================== |
---|
2126 | #D-function IGCM_sys_ncecat |
---|
2127 | #D-* Purpose: encapsulate ncecat call so as to manage error code and retry |
---|
2128 | #D-* Examples: |
---|
2129 | #D- |
---|
2130 | function IGCM_sys_ncecat { |
---|
2131 | IGCM_debug_PushStack "IGCM_sys_ncecat" $@ |
---|
2132 | if ( $DEBUG_sys ) ; then |
---|
2133 | echo "IGCM_sys_ncecat :" $@ |
---|
2134 | fi |
---|
2135 | |
---|
2136 | typeset NB_ESSAI DELAI status i |
---|
2137 | # number of tentative |
---|
2138 | NB_ESSAI=3 |
---|
2139 | # time delay between tentative |
---|
2140 | DELAI=2 |
---|
2141 | |
---|
2142 | i=0 |
---|
2143 | while [ $i -lt $NB_ESSAI ] ; do |
---|
2144 | ncecat -C $@ > /tmp/out_command.$$ 2>&1 |
---|
2145 | status=$? |
---|
2146 | if [ ${status} -gt 0 ] ; then |
---|
2147 | IGCM_debug_Print 2 "IGCM_sys_ncecat : error code ${status}" |
---|
2148 | cat /tmp/out_command.$$ |
---|
2149 | \rm /tmp/out_command.$$ |
---|
2150 | IGCM_debug_Print 2 "IGCM_sys_ncecat : ${i}/${NB_ESSAI} sleep ${DELAI} seconds and try again." |
---|
2151 | sleep $DELAI |
---|
2152 | else |
---|
2153 | \rm /tmp/out_command.$$ |
---|
2154 | break |
---|
2155 | fi |
---|
2156 | (( i = i + 1 )) |
---|
2157 | done |
---|
2158 | |
---|
2159 | if [ ${status} -gt 0 ] ; then |
---|
2160 | echo "IGCM_sys_ncecat : ncecat error" |
---|
2161 | IGCM_debug_Exit "ncecat" |
---|
2162 | fi |
---|
2163 | |
---|
2164 | IGCM_debug_PopStack "IGCM_sys_ncecat" |
---|
2165 | } |
---|
2166 | |
---|
2167 | #D-#================================================== |
---|
2168 | #D-function IGCM_sys_ncflint |
---|
2169 | #D-* Purpose: encapsulate ncflint call so as to manage error code and retry |
---|
2170 | #D-* Examples: |
---|
2171 | #D- |
---|
2172 | function IGCM_sys_ncflint { |
---|
2173 | IGCM_debug_PushStack "IGCM_sys_ncflint" $@ |
---|
2174 | if ( $DEBUG_sys ) ; then |
---|
2175 | echo "IGCM_sys_ncflint :" $@ |
---|
2176 | fi |
---|
2177 | |
---|
2178 | typeset NB_ESSAI DELAI status i |
---|
2179 | # number of tentative |
---|
2180 | NB_ESSAI=3 |
---|
2181 | # time delay between tentative |
---|
2182 | DELAI=2 |
---|
2183 | |
---|
2184 | i=0 |
---|
2185 | while [ $i -lt $NB_ESSAI ] ; do |
---|
2186 | ncflint -C $@ > /tmp/out_command.$$ 2>&1 |
---|
2187 | status=$? |
---|
2188 | if [ ${status} -gt 0 ] ; then |
---|
2189 | IGCM_debug_Print 2 "IGCM_sys_ncflint : error code ${status}" |
---|
2190 | cat /tmp/out_command.$$ |
---|
2191 | \rm /tmp/out_command.$$ |
---|
2192 | IGCM_debug_Print 2 "IGCM_sys_ncflint : ${i}/${NB_ESSAI} sleep ${DELAI} seconds and try again." |
---|
2193 | sleep $DELAI |
---|
2194 | else |
---|
2195 | \rm /tmp/out_command.$$ |
---|
2196 | break |
---|
2197 | fi |
---|
2198 | (( i = i + 1 )) |
---|
2199 | done |
---|
2200 | |
---|
2201 | if [ ${status} -gt 0 ] ; then |
---|
2202 | echo "IGCM_sys_ncflint : ncflint error" |
---|
2203 | IGCM_debug_Exit "ncflint" |
---|
2204 | fi |
---|
2205 | |
---|
2206 | IGCM_debug_PopStack "IGCM_sys_ncflint" |
---|
2207 | } |
---|
2208 | |
---|
2209 | #D-#================================================== |
---|
2210 | #D-function IGCM_sys_ncks |
---|
2211 | #D-* Purpose: encapsulate ncks call so as to manage error code and retry |
---|
2212 | #D-* Examples: |
---|
2213 | #D- |
---|
2214 | function IGCM_sys_ncks { |
---|
2215 | IGCM_debug_PushStack "IGCM_sys_ncks" $@ |
---|
2216 | if ( $DEBUG_sys ) ; then |
---|
2217 | echo "IGCM_sys_ncks :" $@ |
---|
2218 | fi |
---|
2219 | |
---|
2220 | typeset NB_ESSAI DELAI status i |
---|
2221 | # number of tentative |
---|
2222 | NB_ESSAI=3 |
---|
2223 | # time delay between tentative |
---|
2224 | DELAI=2 |
---|
2225 | |
---|
2226 | i=0 |
---|
2227 | while [ $i -lt $NB_ESSAI ] ; do |
---|
2228 | ncks -C $@ > /tmp/out_command.$$ 2>&1 |
---|
2229 | status=$? |
---|
2230 | if [ ${status} -gt 0 ] ; then |
---|
2231 | IGCM_debug_Print 2 "IGCM_sys_ncks : error code ${status}" |
---|
2232 | cat /tmp/out_command.$$ |
---|
2233 | \rm /tmp/out_command.$$ |
---|
2234 | IGCM_debug_Print 2 "IGCM_sys_ncks : ${i}/${NB_ESSAI} sleep ${DELAI} seconds and try again." |
---|
2235 | sleep $DELAI |
---|
2236 | else |
---|
2237 | \rm /tmp/out_command.$$ |
---|
2238 | break |
---|
2239 | fi |
---|
2240 | (( i = i + 1 )) |
---|
2241 | done |
---|
2242 | |
---|
2243 | if [ ${status} -gt 0 ] ; then |
---|
2244 | echo "IGCM_sys_ncks : ncks error" |
---|
2245 | IGCM_debug_Exit "ncks" |
---|
2246 | fi |
---|
2247 | |
---|
2248 | IGCM_debug_PopStack "IGCM_sys_ncks" |
---|
2249 | } |
---|
2250 | |
---|
2251 | #D-#================================================== |
---|
2252 | #D-function IGCM_sys_ncpdq |
---|
2253 | #D-* Purpose: encapsulate ncpdq call so as to manage error code and retry |
---|
2254 | #D-* Examples: |
---|
2255 | #D- |
---|
2256 | function IGCM_sys_ncpdq { |
---|
2257 | IGCM_debug_PushStack "IGCM_sys_ncpdq" $@ |
---|
2258 | if ( $DEBUG_sys ) ; then |
---|
2259 | echo "IGCM_sys_ncpdq :" $@ |
---|
2260 | fi |
---|
2261 | |
---|
2262 | typeset NB_ESSAI DELAI status i |
---|
2263 | # number of tentative |
---|
2264 | NB_ESSAI=3 |
---|
2265 | # time delay between tentative |
---|
2266 | DELAI=2 |
---|
2267 | |
---|
2268 | i=0 |
---|
2269 | while [ $i -lt $NB_ESSAI ] ; do |
---|
2270 | ncpdq -C $@ > /tmp/out_command.$$ 2>&1 |
---|
2271 | status=$? |
---|
2272 | if [ ${status} -gt 0 ] ; then |
---|
2273 | IGCM_debug_Print 2 "IGCM_sys_ncpdq : error code ${status}" |
---|
2274 | cat /tmp/out_command.$$ |
---|
2275 | \rm /tmp/out_command.$$ |
---|
2276 | IGCM_debug_Print 2 "IGCM_sys_ncpdq : ${i}/${NB_ESSAI} sleep ${DELAI} seconds and try again." |
---|
2277 | sleep $DELAI |
---|
2278 | else |
---|
2279 | \rm /tmp/out_command.$$ |
---|
2280 | break |
---|
2281 | fi |
---|
2282 | (( i = i + 1 )) |
---|
2283 | done |
---|
2284 | |
---|
2285 | if [ ${status} -gt 0 ] ; then |
---|
2286 | echo "IGCM_sys_ncpdq : ncpdq error" |
---|
2287 | IGCM_debug_Exit "ncpdq" |
---|
2288 | fi |
---|
2289 | |
---|
2290 | IGCM_debug_PopStack "IGCM_sys_ncpdq" |
---|
2291 | } |
---|
2292 | |
---|
2293 | #D-#================================================== |
---|
2294 | #D-function IGCM_sys_ncra |
---|
2295 | #D-* Purpose: encapsulate ncra call so as to manage error code and retry |
---|
2296 | #D-* Examples: |
---|
2297 | #D- |
---|
2298 | function IGCM_sys_ncra { |
---|
2299 | IGCM_debug_PushStack "IGCM_sys_ncra" $@ |
---|
2300 | if ( $DEBUG_sys ) ; then |
---|
2301 | echo "IGCM_sys_ncra :" $@ |
---|
2302 | fi |
---|
2303 | |
---|
2304 | typeset NB_ESSAI DELAI status i |
---|
2305 | # number of tentative |
---|
2306 | NB_ESSAI=3 |
---|
2307 | # time delay between tentative |
---|
2308 | DELAI=2 |
---|
2309 | |
---|
2310 | i=0 |
---|
2311 | while [ $i -lt $NB_ESSAI ] ; do |
---|
2312 | ncra -C $@ > /tmp/out_command.$$ 2>&1 |
---|
2313 | status=$? |
---|
2314 | if [ ${status} -gt 0 ] ; then |
---|
2315 | IGCM_debug_Print 2 "IGCM_sys_ncra : error code ${status}" |
---|
2316 | cat /tmp/out_command.$$ |
---|
2317 | \rm /tmp/out_command.$$ |
---|
2318 | IGCM_debug_Print 2 "IGCM_sys_ncra : ${i}/${NB_ESSAI} sleep ${DELAI} seconds and try again." |
---|
2319 | sleep $DELAI |
---|
2320 | else |
---|
2321 | \rm /tmp/out_command.$$ |
---|
2322 | break |
---|
2323 | fi |
---|
2324 | (( i = i + 1 )) |
---|
2325 | done |
---|
2326 | |
---|
2327 | if [ ${status} -gt 0 ] ; then |
---|
2328 | echo "IGCM_sys_ncra : ncra error" |
---|
2329 | IGCM_debug_Exit "ncra" |
---|
2330 | fi |
---|
2331 | |
---|
2332 | IGCM_debug_PopStack "IGCM_sys_ncra" |
---|
2333 | } |
---|
2334 | |
---|
2335 | #D-#================================================== |
---|
2336 | #D-function IGCM_sys_ncrcat |
---|
2337 | #D-* Purpose: encapsulate ncrcat call so as to manage error code and retry |
---|
2338 | #D-* Examples: |
---|
2339 | #D- |
---|
2340 | function IGCM_sys_ncrcat { |
---|
2341 | IGCM_debug_PushStack "IGCM_sys_ncrcat" $@ |
---|
2342 | if ( $DEBUG_sys ) ; then |
---|
2343 | echo "IGCM_sys_ncrcat :" $@ |
---|
2344 | fi |
---|
2345 | |
---|
2346 | typeset NB_ESSAI DELAI status i lastArg |
---|
2347 | # number of tentative |
---|
2348 | NB_ESSAI=3 |
---|
2349 | # time delay between tentative |
---|
2350 | DELAI=2 |
---|
2351 | |
---|
2352 | i=0 |
---|
2353 | while [ $i -lt $NB_ESSAI ] ; do |
---|
2354 | ncrcat -C $@ > /tmp/out_command.$$ 2>&1 |
---|
2355 | status=$? |
---|
2356 | if [ ${status} -gt 0 ] ; then |
---|
2357 | IGCM_debug_Print 2 "IGCM_sys_ncrcat : error code ${status}" |
---|
2358 | cat /tmp/out_command.$$ |
---|
2359 | \rm /tmp/out_command.$$ |
---|
2360 | IGCM_debug_Print 2 "IGCM_sys_ncrcat : ${i}/${NB_ESSAI} sleep ${DELAI} seconds and try again." |
---|
2361 | sleep $DELAI |
---|
2362 | elif [ ! "X$( grep "WARNING Intra-file non-monotonicity" /tmp/out_command.$$ )" = "X" ] ; then |
---|
2363 | IGCM_debug_Print 2 "IGCM_sys_ncrcat : WARNING Intra-file non-monotonicity" |
---|
2364 | cat /tmp/out_command.$$ |
---|
2365 | # remove files having corrupted time axis |
---|
2366 | eval lastArg=\${$#} |
---|
2367 | IGCM_debug_Print 2 "IGCM_sys_ncrcat : Delete ${lastArg}" |
---|
2368 | \rm ${lastArg} |
---|
2369 | \rm /tmp/out_command.$$ |
---|
2370 | IGCM_debug_Print 2 "IGCM_sys_ncrcat : ${i}/${NB_ESSAI} sleep ${DELAI} seconds and try again." |
---|
2371 | sleep $DELAI |
---|
2372 | else |
---|
2373 | \rm /tmp/out_command.$$ |
---|
2374 | break |
---|
2375 | fi |
---|
2376 | (( i = i + 1 )) |
---|
2377 | done |
---|
2378 | |
---|
2379 | if [ ${status} -gt 0 ] ; then |
---|
2380 | echo "IGCM_sys_ncrcat : ncrcat error" |
---|
2381 | #IGCM_debug_Exit "ncrcat" |
---|
2382 | fi |
---|
2383 | |
---|
2384 | IGCM_debug_PopStack "IGCM_sys_ncrcat" |
---|
2385 | } |
---|
2386 | |
---|
2387 | #D-#================================================== |
---|
2388 | #D-function IGCM_sys_ncrename |
---|
2389 | #D-* Purpose: encapsulate ncrename call so as to manage error code and retry |
---|
2390 | #D-* Examples: |
---|
2391 | #D- |
---|
2392 | function IGCM_sys_ncrename { |
---|
2393 | IGCM_debug_PushStack "IGCM_sys_ncrename" $@ |
---|
2394 | if ( $DEBUG_sys ) ; then |
---|
2395 | echo "IGCM_sys_ncrename :" $@ |
---|
2396 | fi |
---|
2397 | |
---|
2398 | typeset NB_ESSAI DELAI status i |
---|
2399 | # number of tentative |
---|
2400 | NB_ESSAI=3 |
---|
2401 | # time delay between tentative |
---|
2402 | DELAI=2 |
---|
2403 | |
---|
2404 | i=0 |
---|
2405 | while [ $i -lt $NB_ESSAI ] ; do |
---|
2406 | ncrename $@ > /tmp/out_command.$$ 2>&1 |
---|
2407 | status=$? |
---|
2408 | if [ ${status} -gt 0 ] ; then |
---|
2409 | IGCM_debug_Print 2 "IGCM_sys_ncrename : error code ${status}" |
---|
2410 | cat /tmp/out_command.$$ |
---|
2411 | \rm /tmp/out_command.$$ |
---|
2412 | IGCM_debug_Print 2 "IGCM_sys_ncrename : ${i}/${NB_ESSAI} sleep ${DELAI} seconds and try again." |
---|
2413 | sleep $DELAI |
---|
2414 | else |
---|
2415 | \rm /tmp/out_command.$$ |
---|
2416 | break |
---|
2417 | fi |
---|
2418 | (( i = i + 1 )) |
---|
2419 | done |
---|
2420 | |
---|
2421 | if [ ${status} -gt 0 ] ; then |
---|
2422 | echo "IGCM_sys_ncrename : ncrename error" |
---|
2423 | IGCM_debug_Exit "ncrename" |
---|
2424 | fi |
---|
2425 | |
---|
2426 | IGCM_debug_PopStack "IGCM_sys_ncrename" |
---|
2427 | } |
---|
2428 | |
---|
2429 | #D-#================================================== |
---|
2430 | #D-function IGCM_sys_ncwa |
---|
2431 | #D-* Purpose: encapsulate ncwa call so as to manage error code and retry |
---|
2432 | #D-* Examples: |
---|
2433 | #D- |
---|
2434 | function IGCM_sys_ncwa { |
---|
2435 | IGCM_debug_PushStack "IGCM_sys_ncwa" $@ |
---|
2436 | if ( $DEBUG_sys ) ; then |
---|
2437 | echo "IGCM_sys_ncwa :" $@ |
---|
2438 | fi |
---|
2439 | |
---|
2440 | typeset NB_ESSAI DELAI status i |
---|
2441 | # number of tentative |
---|
2442 | NB_ESSAI=3 |
---|
2443 | # time delay between tentative |
---|
2444 | DELAI=2 |
---|
2445 | |
---|
2446 | i=0 |
---|
2447 | while [ $i -lt $NB_ESSAI ] ; do |
---|
2448 | ncwa -C $@ > /tmp/out_command.$$ 2>&1 |
---|
2449 | status=$? |
---|
2450 | if [ ${status} -gt 0 ] ; then |
---|
2451 | IGCM_debug_Print 2 "IGCM_sys_ncwa : error code ${status}" |
---|
2452 | cat /tmp/out_command.$$ |
---|
2453 | \rm /tmp/out_command.$$ |
---|
2454 | IGCM_debug_Print 2 "IGCM_sys_ncwa : ${i}/${NB_ESSAI} sleep ${DELAI} seconds and try again." |
---|
2455 | sleep $DELAI |
---|
2456 | else |
---|
2457 | \rm /tmp/out_command.$$ |
---|
2458 | break |
---|
2459 | fi |
---|
2460 | (( i = i + 1 )) |
---|
2461 | done |
---|
2462 | |
---|
2463 | if [ ${status} -gt 0 ] ; then |
---|
2464 | echo "IGCM_sys_ncwa : ncwa error" |
---|
2465 | IGCM_debug_Exit "ncwa" |
---|
2466 | fi |
---|
2467 | |
---|
2468 | IGCM_debug_PopStack "IGCM_sys_ncwa" |
---|
2469 | } |
---|
2470 | |
---|
2471 | ############################################################## |
---|
2472 | # CDO OPERATOR |
---|
2473 | |
---|
2474 | #D-#================================================== |
---|
2475 | #D-function IGCM_sys_cdo |
---|
2476 | #D-* Purpose: encapsulate cdo call so as to manage error code and retry |
---|
2477 | #D-* Examples: |
---|
2478 | #D- |
---|
2479 | function IGCM_sys_cdo { |
---|
2480 | IGCM_debug_PushStack "IGCM_sys_cdo" $@ |
---|
2481 | if ( $DEBUG_sys ) ; then |
---|
2482 | echo "IGCM_sys_cdo :" $@ |
---|
2483 | fi |
---|
2484 | |
---|
2485 | typeset status |
---|
2486 | |
---|
2487 | \cdo $@ > /tmp/out_command.$$ 2>&1 |
---|
2488 | status=$? |
---|
2489 | if [ ${status} -gt 0 ] ; then |
---|
2490 | echo "IGCM_sys_cdo : error code ${status}" |
---|
2491 | cat /tmp/out_command.$$ |
---|
2492 | \rm /tmp/out_command.$$ |
---|
2493 | IGCM_debug_PopStack "IGCM_sys_cdo" |
---|
2494 | return 1 |
---|
2495 | else |
---|
2496 | IGCM_debug_PopStack "IGCM_sys_cdo" |
---|
2497 | return 0 |
---|
2498 | fi |
---|
2499 | |
---|
2500 | IGCM_debug_PopStack "IGCM_sys_cdo" |
---|
2501 | } |
---|