1 | #!/bin/ksh |
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2 | |
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3 | #************************************************************** |
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4 | # Author: Sébastien Denvil |
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5 | # Contact: Sebastien.Denvil__at__ipsl.jussieu.fr |
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6 | # $Revision:: $ Revision of last commit |
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7 | # $Author:: $ Author of last commit |
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8 | # $Date:: $ Date of last commit |
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9 | # IPSL (2006) |
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10 | # This software is governed by the CeCILL licence see libIGCM/libIGCM_CeCILL.LIC |
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11 | # |
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12 | #************************************************************** |
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13 | |
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14 | #========================================================= |
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15 | # The documentation of this file can be automatically generated |
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16 | # if you use the prefix #D- for comments to be extracted. |
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17 | # Extract with command: cat lib* | grep "^#D-" | cut -c "4-" |
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18 | #========================================================= |
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19 | |
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20 | #D-#================================================== |
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21 | #D-LibIGCM_sys for IITM IBM machine |
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22 | #D-#================================================== |
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23 | #D- |
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24 | #D- This ksh library if a layer under some usefull |
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25 | #D-environment variables and shell commands. |
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26 | #D-All those definitions depend on host particularities. |
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27 | #D-It manages a stack mechanism and test validity of operations. |
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28 | #D-All function described bellow must be prefixed by IGCM_sys. |
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29 | |
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30 | #==================================================== |
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31 | # libIGCM_sys PARAMETERS |
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32 | #==================================================== |
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33 | |
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34 | #==================================================== |
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35 | # set DEBUG_sys to true to output calls of function |
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36 | typeset -r DEBUG_sys=${DEBUG_sys:=true} |
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37 | |
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38 | #==================================================== |
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39 | # Turn in dry run mode ? (sys_Put_Rest, sys_Put_Out, sys_Get) |
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40 | typeset -r DRYRUN=${DRYRUN:=0} |
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41 | |
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42 | # YOU MUST COMPILE YOUR EXE FILES FOR DRYRUN MODE ! |
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43 | # ------------------------------------------------------------------------------------- |
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44 | # | DRYRUN= | Date computations, | sys_Get | Exe | sys_Put_Out; sys_Put_Rest | |
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45 | # | | Cp/Exe/param/files | | | | |
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46 | # | | Chmod Qsub | | | | |
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47 | # ------------------------------------------------------------------------------------- |
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48 | # | 0 | yes | yes | yes | yes | |
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49 | # ------------------------------------------------------------------------------------- |
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50 | # | 1 | yes | yes | yes | no | |
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51 | # ------------------------------------------------------------------------------------- |
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52 | # | 2 | yes | yes | no | no | |
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53 | # ------------------------------------------------------------------------------------- |
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54 | # | 3 | yes | no | no | no | |
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55 | # ------------------------------------------------------------------------------------- |
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56 | |
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57 | #===================================================== |
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58 | # Global Variables : |
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59 | #===================================================== |
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60 | # Language : "fr" or "en" |
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61 | typeset -r MYLANG="fr" |
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62 | |
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63 | #===================================================== |
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64 | # Host and user names |
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65 | # $hostname ou hostname |
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66 | typeset HOST=${HOST:=$( hostname )} |
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67 | # $username ou whoami |
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68 | typeset LOGIN=${LOGIN:=$( whoami )} |
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69 | # $hostname of the MASTER job |
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70 | typeset MASTER=iitm01 |
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71 | # project name |
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72 | typeset PROJECT=NONE |
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73 | # jobWarningDelay in seconds |
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74 | typeset jobWarningDelay=NONE |
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75 | |
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76 | #D- |
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77 | #D-#================================================== |
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78 | #D-Program used in libIGCM |
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79 | #D-#================================================== |
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80 | |
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81 | # Submit command |
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82 | typeset SUBMIT=${SUBMIT:=/usr/lpp/LoadL/full/bin/llsubmit} |
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83 | # rsync with path |
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84 | typeset -r RSYNC=/usr/bin/rsync |
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85 | # RSYNC_opt args to rsync |
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86 | typeset -r RSYNC_opt="-va" |
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87 | # ie storage filesystem |
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88 | typeset -r STOREHOST=iitm01 |
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89 | typeset -r REMOTE_RSYNC=/usr/bin/rsync |
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90 | |
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91 | #==================================================== |
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92 | # Set environment tools (ferret, nco, cdo, rebuild, ...) |
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93 | #==================================================== |
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94 | # Not applicable here. Only rebuild path |
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95 | export export PATH=${PATH}:/gpfs1/home/sebastien/REBUILD/ |
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96 | |
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97 | #==================================================== |
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98 | # Host specific DIRECTORIES |
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99 | #==================================================== |
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100 | |
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101 | #==================================================== |
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102 | #- MirrorlibIGCM for frontend |
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103 | typeset -r MirrorlibIGCM=${MirrorlibIGCM:=false} |
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104 | |
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105 | #==================================================== |
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106 | #- libIGCM_POST for frontend |
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107 | typeset -r libIGCM_POST=${libIGCM} |
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108 | |
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109 | #==================================================== |
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110 | #- R_EXE (==> BIN_DIR = ${MODIPSL}/bin ) |
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111 | typeset -r R_EXE="${MODIPSL}/bin" |
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112 | |
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113 | #==================================================== |
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114 | #- SUBMIT_DIR : submission dir |
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115 | typeset SUBMIT_DIR=${SUBMIT_DIR:=${LOADL_STEP_INITDIR}} |
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116 | |
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117 | #==================================================== |
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118 | #- IN |
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119 | typeset -r R_IN=${R_IN:=/gpfs1/home/sabin} |
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120 | typeset -r R_IN_ECMWF=${R_IN_ECMWF:=/gpfs1/home/sabin} |
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121 | |
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122 | #==================================================== |
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123 | #- RUN_DIR_PATH : Temporary working directory (=> TMP) |
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124 | typeset -r RUN_DIR_PATH=${RUN_DIR_PATH:=$( echo ${HOME} | sed -e "s/gpfs1/gpfs3/" )/RUN/${LOADL_STEP_ID}} |
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125 | |
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126 | #==================================================== |
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127 | #- OUTCOMMAND_PATH : tmp place to store command lines standard error and outputs |
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128 | typeset -r OUTCOMMAND_PATH=/tmp |
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129 | |
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130 | #==================================================== |
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131 | #- HOST_MPIRUN_COMMAND |
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132 | typeset -r HOST_MPIRUN_COMMAND=${HOST_MPIRUN_COMMAND:="/usr/bin/time poe"} |
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133 | |
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134 | #==================================================== |
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135 | #- Max number of arguments passed to nco operator or demigration command |
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136 | UNIX_MAX_LIMIT=360 |
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137 | |
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138 | #==================================================== |
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139 | #- set PackDefault to false on iitm |
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140 | PackDefault=false |
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141 | |
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142 | #==================================================== |
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143 | #- Number of core per node (max number of OpenMP task) |
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144 | NUM_COREPERNODE=2 |
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145 | |
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146 | #==================================================== |
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147 | #- Default number of MPI task for IPSL coupled model |
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148 | #- required for backward compatibility |
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149 | #- |
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150 | DEFAULT_NUM_PROC_OCE=5 |
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151 | DEFAULT_NUM_PROC_CPL=1 |
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152 | (( DEFAULT_NUM_PROC_ATM = BATCH_NUM_PROC_TOT - DEFAULT_NUM_PROC_OCE - DEFAULT_NUM_PROC_CPL )) |
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153 | |
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154 | #D-#================================================== |
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155 | #D-function IGCM_sys_defineArchives |
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156 | #D-* Purpose: |
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157 | #D-* Define ARCHIVE : Dedicated to large files |
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158 | #D-* Define STORAGE : Dedicated to small/medium files |
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159 | #D-* Define R_OUT : Output tree located on ARCHIVE |
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160 | #D-* Define R_FIG : Output tree located on STORAGE hosting figures (monitoring and atlas, and/or small files) |
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161 | #D-* Define R_BUF : Output tree located on STORAGE hosting files waiting for rebuild or pack processes |
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162 | #D-* if SpaceName=TEST nothing special will hapen |
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163 | #D-* Examples: |
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164 | #D- |
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165 | function IGCM_sys_defineArchives { |
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166 | IGCM_debug_PushStack "IGCM_sys_defineArchives" |
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167 | |
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168 | if [ ! X${config_UserChoices_ARCHIVE} = X ]; then |
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169 | #==================================================== |
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170 | #- ARCHIVE (dedicated to large files) |
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171 | ARCHIVE=${config_UserChoices_ARCHIVE} |
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172 | else |
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173 | #==================================================== |
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174 | #- ARCHIVE (dedicated to large files) |
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175 | ARCHIVE=$( echo ${HOME} | sed -e "s/gpfs1/gpfs3/" ) |
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176 | fi |
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177 | |
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178 | if [ ! X${config_UserChoices_STORAGE} = X ]; then |
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179 | #==================================================== |
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180 | #- STORAGE (dedicated to small/medium files) |
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181 | STORAGE=${config_UserChoices_STORAGE} |
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182 | else |
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183 | #==================================================== |
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184 | #- STORAGE (dedicated to small/medium files) |
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185 | STORAGE=${ARCHIVE} |
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186 | fi |
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187 | |
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188 | # ON OBELIX NO SPECIAL CASE WHEN X${config_UserChoices_SpaceName} = XTEST |
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189 | |
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190 | #==================================================== |
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191 | #- R_OUT |
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192 | R_OUT=${ARCHIVE}/IGCM_OUT |
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193 | |
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194 | #==================================================== |
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195 | #- R_FIG (hosting figures : monitoring and atlas, and/or small files) |
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196 | R_FIG=${WORKDIR}/IGCM_OUT |
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197 | |
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198 | #==================================================== |
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199 | #- R_BUF (ONLY FOR double copy an scratch) |
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200 | R_BUF=${WORKDIR}/IGCM_OUT |
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201 | |
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202 | IGCM_debug_Print 1 "R_OUT has been defined = ${R_OUT}" |
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203 | IGCM_debug_Print 1 "R_BUF has been defined = ${R_BUF}" |
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204 | IGCM_debug_Print 1 "R_FIG has been defined = ${R_FIG}" |
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205 | |
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206 | IGCM_debug_PopStack "IGCM_sys_defineArchives" |
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207 | } |
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208 | |
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209 | #D-#================================================== |
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210 | #D-function IGCM_sys_RshArchive |
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211 | #D-* Purpose: Archive rsh command |
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212 | #D-* Examples: |
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213 | #D- |
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214 | function IGCM_sys_RshArchive { |
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215 | IGCM_debug_PushStack "IGCM_sys_RshArchive" $@ |
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216 | /bin/ksh <<-EOF |
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217 | ${@} |
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218 | EOF |
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219 | status=$? |
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220 | if [ ${status} -gt 0 ] ; then |
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221 | IGCM_debug_Print 2 "IGCM_sys_RshArchive : command failed error code ${status}" |
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222 | IGCM_debug_Exit "IGCM_sys_RshArchive" |
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223 | fi |
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224 | IGCM_debug_PopStack "IGCM_sys_RshArchive" |
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225 | } |
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226 | |
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227 | #D-#================================================== |
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228 | #D-function IGCM_sys_RshArchive_NoError |
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229 | #D-* Purpose: Archive rsh command, without error |
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230 | #D-* used only in monitoring.job |
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231 | #D-* Examples: |
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232 | #D- |
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233 | function IGCM_sys_RshArchive_NoError { |
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234 | IGCM_debug_PushStack "IGCM_sys_RshArchive_NoError" $@ |
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235 | /bin/ksh <<-EOF |
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236 | ${@} 2> /dev/null |
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237 | EOF |
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238 | IGCM_debug_PopStack "IGCM_sys_RshArchive_NoError" |
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239 | } |
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240 | |
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241 | #D-#================================================== |
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242 | #D-function IGCM_sys_MkdirArchive |
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243 | #D-* Purpose: Mkdir on Archive |
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244 | #D-* Examples: |
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245 | #D- |
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246 | function IGCM_sys_MkdirArchive { |
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247 | IGCM_debug_PushStack "IGCM_sys_MkdirArchive" $@ |
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248 | if ( $DEBUG_sys ) ; then |
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249 | echo "IGCM_sys_MkdirArchive :" $@ |
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250 | fi |
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251 | #- creation de repertoire sur le serveur fichier |
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252 | if [ ! -d ${1} ]; then |
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253 | \mkdir -p $1 |
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254 | status=$? |
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255 | |
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256 | if [ ${status} -gt 0 ] ; then |
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257 | IGCM_debug_Print 2 "IGCM_sys_MkdirArchive : mkdir failed error code ${status}" |
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258 | IGCM_debug_Exit "IGCM_sys_MkdirArchive" |
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259 | fi |
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260 | fi |
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261 | IGCM_debug_PopStack "IGCM_sys_MkdirArchive" |
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262 | } |
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263 | |
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264 | #D-#================================================== |
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265 | #D-function IGCM_sys_TestDirArchive |
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266 | #D-* Purpose: Test Directory that must exists on Archive |
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267 | #D-* Examples: |
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268 | #D- |
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269 | function IGCM_sys_TestDirArchive { |
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270 | IGCM_debug_PushStack "IGCM_sys_TestDirArchive" $@ |
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271 | if ( $DEBUG_sys ) ; then |
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272 | echo "IGCM_sys_TestDirArchive :" $@ |
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273 | fi |
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274 | typeset ExistFlag |
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275 | ExistFlag=$( IGCM_sys_RshArchive "[ -d $1 ] && echo 0 || echo 1" ) |
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276 | IGCM_debug_PopStack "IGCM_sys_TestDirArchive" |
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277 | return ${ExistFlag} |
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278 | } |
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279 | |
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280 | #D-#================================================== |
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281 | #D-function IGCM_sys_IsFileArchived |
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282 | #D-* Purpose: Test file that must NOT EXISTS on Archive based on filename only |
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283 | #D-* Examples: |
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284 | #D- |
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285 | function IGCM_sys_IsFileArchived { |
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286 | IGCM_debug_PushStack "IGCM_sys_IsFileArchived" $@ |
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287 | if ( $DEBUG_sys ) ; then |
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288 | echo "IGCM_sys_IsFileArchived :" $@ |
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289 | fi |
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290 | typeset IsArchivedFlag |
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291 | IsArchivedFlag=$( [ "X$( echo $@ | grep \/gpfs3 )" != "X" ] && echo 0 || echo 1 ) |
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292 | IGCM_debug_PopStack "IGCM_sys_IsFileArchived" |
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293 | |
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294 | return ${IsArchivedFlag} |
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295 | } |
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296 | |
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297 | #D-#================================================== |
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298 | #D-function IGCM_sys_TestFileArchive |
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299 | #D-* Purpose: Test file that must NOT EXISTS on Archive |
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300 | #D-* Examples: |
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301 | #D- |
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302 | function IGCM_sys_TestFileArchive { |
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303 | IGCM_debug_PushStack "IGCM_sys_TestFileArchive" $@ |
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304 | typeset ExistFlag |
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305 | ExistFlag=$( IGCM_sys_RshArchive "[ -f $1 ] && echo 0 || echo 1" ) |
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306 | IGCM_debug_PopStack "IGCM_sys_TestFileArchive" |
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307 | |
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308 | return ${ExistFlag} |
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309 | } |
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310 | |
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311 | #D-#================================================== |
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312 | #D-function IGCM_sys_CountFileArchive |
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313 | #D-* Purpose: Count files on Archive filesystem |
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314 | #D-* Examples: |
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315 | #D- |
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316 | function IGCM_sys_CountFileArchive { |
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317 | IGCM_debug_PushStack "IGCM_sys_CountFileArchive" $@ |
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318 | #Command depends on targeted file system |
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319 | DEBUG_sys=false IGCM_sys_IsFileArchived $1 |
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320 | if [ $? = 0 ] ; then |
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321 | IGCM_sys_RshArchive "ls ${@} 2>/dev/null | wc -l" |
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322 | status=$? |
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323 | else |
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324 | ls ${@} 2>/dev/null | wc -l |
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325 | status=$? |
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326 | fi |
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327 | if [ ${status} -gt 0 ] ; then |
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328 | echo "IGCM_sys_CountFileArchive : erreur." |
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329 | fi |
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330 | IGCM_debug_PopStack "IGCM_sys_CountFileArchive" |
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331 | } |
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332 | |
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333 | #D-#================================================== |
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334 | #D-function IGCM_sys_Qsub |
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335 | #D-* Purpose: Qsub new job |
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336 | #D-* Examples: |
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337 | #D- |
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338 | function IGCM_sys_Qsub { |
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339 | IGCM_debug_PushStack "IGCM_sys_Qsub" $@ |
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340 | |
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341 | typeset status |
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342 | |
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343 | if ( $DEBUG_sys ) ; then |
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344 | echo "IGCM_sys_Qsub :" $@ |
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345 | fi |
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346 | # We have to change output/error file |
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347 | [ ${#@} = 1 ] && REP_FOR_JOB=${SUBMIT_DIR} |
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348 | [ ${#@} = 2 ] && REP_FOR_JOB=${2} |
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349 | sed -e "s:\# \@ output *= .*:\# \@ output = ${Script_Output}:" \ |
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350 | -e "s:\# \@ error *= .*:\# \@ error = ${Script_Output}:" \ |
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351 | $1 > ${REP_FOR_JOB}/JOB_FOR_IGCM |
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352 | cd $REP_FOR_JOB ; /usr/lpp/LoadL/full/bin/llsubmit JOB_FOR_IGCM > ${OUTCOMMAND_PATH}/out_command_${LOGIN}.$$ 2>&1 ; status=$? ; cd - ; |
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353 | |
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354 | cat ${OUTCOMMAND_PATH}/out_command_${LOGIN}.$$ |
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355 | if [ ${status} -gt 0 ] ; then |
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356 | IGCM_debug_Print 2 "IGCM_sys_Qsub $1 : error code ${status}" |
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357 | IGCM_debug_Exit "IGCM_sys_Qsub" |
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358 | else |
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359 | JobID=$( gawk {'print $4'} ${OUTCOMMAND_PATH}/out_command_${LOGIN}.$$ | tail -1 | sed -e s/\"//g ) |
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360 | IGCM_sys_Rm ${REP_FOR_JOB}/JOB_FOR_IGCM |
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361 | fi |
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362 | IGCM_debug_PopStack "IGCM_sys_Qsub" |
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363 | } |
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364 | |
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365 | #D-#================================================== |
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366 | #D-function IGCM_sys_QsubPost |
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367 | #D-* Purpose: Qsub new job on scalaire |
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368 | #D-* Examples: |
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369 | #D- |
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370 | function IGCM_sys_QsubPost { |
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371 | IGCM_debug_PushStack "IGCM_sys_QsubPost" $@ |
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372 | |
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373 | typeset status |
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374 | |
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375 | if ( $DEBUG_sys ) ; then |
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376 | echo "IGCM_sys_QsubPost :" $@ |
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377 | fi |
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378 | # We have to change output/error file |
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379 | [ ${#@} = 1 ] && REP_FOR_JOB=${POST_DIR} |
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380 | [ ${#@} = 2 ] && REP_FOR_JOB=${2} |
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381 | |
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382 | sed -e "s:\# \@ output *= .*:\# \@ output = ${Script_Post_Output}.out:" \ |
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383 | -e "s:\# \@ error *= .*:\# \@ error = ${Script_Post_Output}.out:" \ |
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384 | ${libIGCM_POST}/$1.job > ${REP_FOR_JOB}/JOB_FOR_IGCM |
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385 | |
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386 | cd $REP_FOR_JOB ; /usr/lpp/LoadL/full/bin/llsubmit JOB_FOR_IGCM > ${OUTCOMMAND_PATH}/out_command_${LOGIN}.$$ 2>&1 ; status=$? ; cd - ; |
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387 | |
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388 | cat ${OUTCOMMAND_PATH}/out_command_${LOGIN}.$$ |
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389 | if [ ${status} -gt 0 ] ; then |
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390 | IGCM_debug_Print 2 "IGCM_sys_QsubPost $1 : error code ${status}" |
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391 | IGCM_debug_Exit "IGCM_sys_QsubPost" |
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392 | else |
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393 | JobID=$( gawk {'print $4'} ${OUTCOMMAND_PATH}/out_command_${LOGIN}.$$ | tail -1 | sed -e s/\"//g ) |
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394 | IGCM_sys_Rm ${REP_FOR_JOB}/JOB_FOR_IGCM |
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395 | fi |
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396 | IGCM_debug_PopStack "IGCM_sys_QsubPost" |
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397 | } |
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398 | |
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399 | #D-************************* |
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400 | #D- File transfer functions |
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401 | #D-************************* |
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402 | #D- |
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403 | |
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404 | #D-#================================================== |
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405 | #D-function IGCM_sys_RmRunDir |
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406 | #D-* Purpose: rm tmpdir (dummy function most of the time batch |
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407 | #D- scheduler will do the job) |
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408 | #D-* Examples: |
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409 | #D- |
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410 | function IGCM_sys_RmRunDir { |
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411 | IGCM_debug_PushStack "IGCM_sys_RmRunDir" $@ |
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412 | if ( $DEBUG_sys ) ; then |
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413 | echo "IGCM_sys_RmRunDir :" $@ |
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414 | fi |
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415 | |
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416 | typeset status |
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417 | |
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418 | echo rm $@ > ${OUTCOMMAND_PATH}/out_command_${LOGIN}.$$ 2>&1 |
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419 | \rm $@ >> ${OUTCOMMAND_PATH}/out_command_${LOGIN}.$$ 2>&1 |
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420 | status=$? |
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421 | |
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422 | if [ ${status} -gt 0 ] ; then |
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423 | IGCM_debug_Print 1 "IGCM_sys_RmRunDir : rm error code is ${status}." |
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424 | cat ${OUTCOMMAND_PATH}/out_command_${LOGIN}.$$ |
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425 | IGCM_debug_Exit "IGCM_sys_RmRunDir" |
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426 | else |
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427 | \rm ${OUTCOMMAND_PATH}/out_command_${LOGIN}.$$ |
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428 | fi |
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429 | IGCM_debug_PopStack "IGCM_sys_RmRunDir" |
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430 | } |
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431 | |
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432 | #D-#================================================== |
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433 | #D-function IGCM_sys_Put_Dir |
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434 | #D-* Purpose: Copy a complete directory on $(ARCHIVE) |
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435 | #D-* Examples: |
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436 | #D- |
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437 | function IGCM_sys_Put_Dir { |
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438 | IGCM_debug_PushStack "IGCM_sys_Put_Dir" $@ |
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439 | if ( $DEBUG_sys ) ; then |
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440 | echo "IGCM_sys_Put_Dir :" $@ |
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441 | fi |
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442 | if [ $DRYRUN = 0 ]; then |
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443 | if [ ! -d ${1} ] ; then |
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444 | echo "WARNING : IGCM_sys_Put_Dir ${1} DOES NOT EXIST ." |
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445 | IGCM_debug_PopStack "IGCM_sys_Put_Dir" |
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446 | return |
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447 | fi |
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448 | |
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449 | typeset status |
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450 | |
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451 | # Only if we use rsync |
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452 | #IGCM_sys_TestDirArchive $( dirname $2 ) |
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453 | # |
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454 | #USUAL WAY |
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455 | \cp -r $1 $2 > ${OUTCOMMAND_PATH}/out_command_${LOGIN}.$$ 2>&1 |
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456 | status=$? |
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457 | |
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458 | if [ ${status} -gt 0 ] ; then |
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459 | IGCM_debug_Print 2 "IGCM_sys_Put_Dir : cp failed error code ${status}" |
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460 | cat ${OUTCOMMAND_PATH}/out_command_${LOGIN}.$$ |
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461 | IGCM_debug_Exit "IGCM_sys_Put_Dir" |
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462 | else |
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463 | \rm ${OUTCOMMAND_PATH}/out_command_${LOGIN}.$$ |
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464 | fi |
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465 | fi |
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466 | IGCM_debug_PopStack "IGCM_sys_Put_Dir" |
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467 | } |
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468 | |
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469 | #D-#================================================== |
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470 | #D-function IGCM_sys_Get_Dir |
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471 | #D-* Purpose: Copy a complete directory from ${ARCHIVE} |
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472 | #D-* Examples: |
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473 | #D- |
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474 | function IGCM_sys_Get_Dir { |
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475 | IGCM_debug_PushStack "IGCM_sys_Get_Dir" $@ |
---|
476 | if ( $DEBUG_sys ) ; then |
---|
477 | echo "IGCM_sys_Get_Dir :" $@ |
---|
478 | fi |
---|
479 | if [ $DRYRUN = 0 ]; then |
---|
480 | if [ ! -d ${1} ] ; then |
---|
481 | echo "WARNING : IGCM_sys_Get_Dir ${1} DOES NOT EXIST ." |
---|
482 | IGCM_debug_PopStack "IGCM_sys_Get_Dir" |
---|
483 | return |
---|
484 | fi |
---|
485 | |
---|
486 | typeset status |
---|
487 | |
---|
488 | #USUAL WAY |
---|
489 | \cp -ur $1 $2 > ${OUTCOMMAND_PATH}/out_command_${LOGIN}.$$ 2>&1 |
---|
490 | status=$? |
---|
491 | |
---|
492 | if [ ${status} -gt 0 ] ; then |
---|
493 | IGCM_debug_Print 2 "IGCM_sys_Get_Dir : cp failed error code ${status}" |
---|
494 | cat ${OUTCOMMAND_PATH}/out_command_${LOGIN}.$$ |
---|
495 | IGCM_debug_Exit "IGCM_sys_Get_Dir" |
---|
496 | else |
---|
497 | \rm ${OUTCOMMAND_PATH}/out_command_${LOGIN}.$$ |
---|
498 | fi |
---|
499 | fi |
---|
500 | IGCM_debug_PopStack "IGCM_sys_Get_Dir" |
---|
501 | } |
---|
502 | |
---|
503 | #D-#================================================== |
---|
504 | #D-function IGCM_sys_Put_Rest |
---|
505 | #D-* Purpose: Put computied restarts on ${ARCHIVE}. |
---|
506 | #D- File and target directory must exist. |
---|
507 | #D-* Examples: |
---|
508 | #D- |
---|
509 | function IGCM_sys_Put_Rest { |
---|
510 | IGCM_debug_PushStack "IGCM_sys_Put_Rest" $@ |
---|
511 | if ( $DEBUG_sys ) ; then |
---|
512 | echo "IGCM_sys_Put_Rest :" $@ |
---|
513 | fi |
---|
514 | if [ $DRYRUN = 0 ]; then |
---|
515 | if [ ! -f ${1} ] ; then |
---|
516 | echo "ERROR : IGCM_sys_Put_Rest ${1} DOES NOT EXIST ." |
---|
517 | IGCM_debug_Exit "IGCM_sys_Put_Rest" |
---|
518 | fi |
---|
519 | |
---|
520 | typeset status |
---|
521 | # |
---|
522 | if [ X${JobType} = XRUN ] ; then |
---|
523 | IGCM_sys_Chmod 444 ${1} |
---|
524 | fi |
---|
525 | # |
---|
526 | # Only if we use rsync |
---|
527 | #IGCM_sys_MkdirArchive $( dirname $2 ) |
---|
528 | # |
---|
529 | #USUAL WAY |
---|
530 | \cp $1 $2 > ${OUTCOMMAND_PATH}/out_command_${LOGIN}.$$ 2>&1 |
---|
531 | status=$? |
---|
532 | |
---|
533 | if [ ${status} -gt 0 ] ; then |
---|
534 | IGCM_debug_Print 2 "IGCM_sys_Put_Rest : cp failed error code ${status}" |
---|
535 | cat ${OUTCOMMAND_PATH}/out_command_${LOGIN}.$$ |
---|
536 | IGCM_debug_Exit "IGCM_sys_Put_Rest" |
---|
537 | else |
---|
538 | \rm ${OUTCOMMAND_PATH}/out_command_${LOGIN}.$$ |
---|
539 | fi |
---|
540 | fi |
---|
541 | IGCM_debug_PopStack "IGCM_sys_Put_Rest" |
---|
542 | } |
---|
543 | |
---|
544 | #D-#================================================== |
---|
545 | #D-function IGCM_sys_Put_Out |
---|
546 | #D-* Purpose: Copy a file on ${ARCHIVE} after having chmod it in readonly |
---|
547 | #D-* Examples: |
---|
548 | #D- |
---|
549 | function IGCM_sys_Put_Out { |
---|
550 | IGCM_debug_PushStack "IGCM_sys_Put_Out" $@ |
---|
551 | if ( $DEBUG_sys ) ; then |
---|
552 | echo "IGCM_sys_Put_Out :" $@ |
---|
553 | fi |
---|
554 | |
---|
555 | typeset status |
---|
556 | |
---|
557 | if [ $DRYRUN = 0 ]; then |
---|
558 | if [ ! -f ${1} ] ; then |
---|
559 | echo "WARNING : IGCM_sys_Put_Out ${1} DOES NOT EXIST ." |
---|
560 | IGCM_debug_PopStack "IGCM_sys_Put_Out" |
---|
561 | return 1 |
---|
562 | fi |
---|
563 | # |
---|
564 | IGCM_sys_MkdirArchive $( dirname $2 ) |
---|
565 | # |
---|
566 | if [ X${JobType} = XRUN ] ; then |
---|
567 | if [ X${3} = X ] ; then |
---|
568 | IGCM_sys_Chmod 444 ${1} |
---|
569 | fi |
---|
570 | fi |
---|
571 | # |
---|
572 | #USUAL WAY |
---|
573 | \cp $1 $2 > ${OUTCOMMAND_PATH}/out_command_${LOGIN}.$$ 2>&1 |
---|
574 | status=$? |
---|
575 | |
---|
576 | if [ ${status} -gt 0 ] ; then |
---|
577 | IGCM_debug_Print 2 "IGCM_sys_Put_Out : cp failed error code ${status}" |
---|
578 | cat ${OUTCOMMAND_PATH}/out_command_${LOGIN}.$$ |
---|
579 | IGCM_debug_Exit "IGCM_sys_Put_Out" |
---|
580 | else |
---|
581 | \rm ${OUTCOMMAND_PATH}/out_command_${LOGIN}.$$ |
---|
582 | fi |
---|
583 | fi |
---|
584 | IGCM_debug_PopStack "IGCM_sys_Put_Out" |
---|
585 | return 0 |
---|
586 | } |
---|
587 | |
---|
588 | #D-#================================================== |
---|
589 | #D-function IGCM_sys_Get |
---|
590 | #D-* Purpose: Get a file from ${ARCHIVE} |
---|
591 | #D-* Examples: IGCM_sys_Get myfile /destpath/myfile_with_PREFIX |
---|
592 | #D- IGCM_sys_Get /l Array_contain_myfiles /destpath/ |
---|
593 | function IGCM_sys_Get { |
---|
594 | IGCM_debug_PushStack "IGCM_sys_Get" $@ |
---|
595 | |
---|
596 | typeset DEST status dm_liste |
---|
597 | |
---|
598 | if ( $DEBUG_sys ) ; then |
---|
599 | echo "IGCM_sys_Get :" $@ |
---|
600 | fi |
---|
601 | if [ $DRYRUN -le 2 ]; then |
---|
602 | if [ X${1} = X'/l' ] ; then |
---|
603 | eval set +A dm_liste \${${2}} |
---|
604 | else |
---|
605 | dm_liste=${1} |
---|
606 | fi |
---|
607 | eval DEST=\${${#}} |
---|
608 | |
---|
609 | # test if the (first) file is present in the old computation : |
---|
610 | DEBUG_sys=false IGCM_sys_IsFileArchived ${dm_liste[0]} |
---|
611 | if [ $? = 0 ] ; then |
---|
612 | IGCM_sys_TestFileArchive ${dm_liste[0]} |
---|
613 | status=$? |
---|
614 | else |
---|
615 | IGCM_sys_TestFileBuffer ${dm_liste[0]} |
---|
616 | status=$? |
---|
617 | fi |
---|
618 | |
---|
619 | if [ ${status} -gt 0 ] ; then |
---|
620 | echo "IGCM_sys_Get, ERROR : regular file ${dm_liste[0]} DOES NOT EXIST ." |
---|
621 | IGCM_debug_Exit "IGCM_sys_Get" |
---|
622 | return |
---|
623 | fi |
---|
624 | |
---|
625 | #USUAL WAY |
---|
626 | \cp ${dm_liste[*]} ${DEST} > ${OUTCOMMAND_PATH}/out_command_${LOGIN}.$$ 2>&1 |
---|
627 | status=$? |
---|
628 | |
---|
629 | if [ ${status} -gt 0 ] ; then |
---|
630 | IGCM_debug_Print 2 "IGCM_sys_Get : cp failed error code ${status}" |
---|
631 | cat ${OUTCOMMAND_PATH}/out_command_${LOGIN}.$$ |
---|
632 | IGCM_debug_Exit "IGCM_sys_Get" |
---|
633 | else |
---|
634 | \rm ${OUTCOMMAND_PATH}/out_command_${LOGIN}.$$ |
---|
635 | fi |
---|
636 | fi |
---|
637 | IGCM_debug_PopStack "IGCM_sys_Get" |
---|
638 | } |
---|
639 | |
---|
640 | #D-#================================================== |
---|
641 | #D-function IGCM_sys_Dods_Rm |
---|
642 | #D-* Purpose: DO NOTHING ! Put ${ARCHIVE} files on DODS internet protocole. |
---|
643 | #D-* Examples: |
---|
644 | #D- |
---|
645 | function IGCM_sys_Dods_Rm { |
---|
646 | if ( $DEBUG_sys ) ; then |
---|
647 | echo "IGCM_sys_Dods_Rm :" $@ |
---|
648 | fi |
---|
649 | return 0 |
---|
650 | } |
---|
651 | |
---|
652 | #D-#================================================== |
---|
653 | #D-function IGCM_sys_Dods_Cp |
---|
654 | #D-* Purpose: Copy $(ARCHIVE) files on DODS internet protocole. |
---|
655 | #D-* Examples: |
---|
656 | #D- |
---|
657 | function IGCM_sys_Dods_Cp { |
---|
658 | if ( $DEBUG_sys ) ; then |
---|
659 | echo "IGCM_sys_Dods_Cp :" $@ |
---|
660 | fi |
---|
661 | return 0 |
---|
662 | } |
---|
663 | |
---|
664 | #D-#================================================== |
---|
665 | #D-function IGCM_sys_Put_Dods |
---|
666 | #D-* Purpose: Put ${ARCHIVE} files on DODS internet protocole. Dummy function here |
---|
667 | #D-* Examples: |
---|
668 | #D- |
---|
669 | function IGCM_sys_Put_Dods { |
---|
670 | IGCM_debug_PushStack "IGCM_sys_Put_Dods" $@ |
---|
671 | if ( $DEBUG_sys ) ; then |
---|
672 | echo "IGCM_sys_Put_Dods :" $@ |
---|
673 | fi |
---|
674 | IGCM_debug_PopStack "IGCM_sys_Put_Dods" |
---|
675 | } |
---|
676 | |
---|
677 | ############################################################## |
---|
678 | # REBUILD OPERATOR |
---|
679 | |
---|
680 | #D-#================================================== |
---|
681 | #D-function IGCM_sys_sync |
---|
682 | #D-* Purpose: flush buffer on disk (dummy function on Ada) |
---|
683 | #D-* Examples: |
---|
684 | #D- |
---|
685 | function IGCM_sys_sync { |
---|
686 | IGCM_debug_PushStack "IGCM_sys_sync" $@ |
---|
687 | if ( $DEBUG_sys ) ; then |
---|
688 | echo "IGCM_sys_sync :" $@ |
---|
689 | echo "Dummy call, let the system do that." |
---|
690 | fi |
---|
691 | IGCM_debug_PopStack "IGCM_sys_sync" |
---|
692 | } |
---|
693 | |
---|
694 | ############################################################ |
---|
695 | # Activate Running Environnment Variables |
---|
696 | |
---|
697 | #D-#================================================== |
---|
698 | #D-function IGCM_sys_activ_variables |
---|
699 | #D-* Purpose: set environement variables prior to execution |
---|
700 | #D-* Examples: |
---|
701 | #D- |
---|
702 | function IGCM_sys_activ_variables { |
---|
703 | IGCM_debug_PushStack "IGCM_sys_activ_variables" |
---|
704 | if ( $DEBUG_sys ) ; then |
---|
705 | echo "IGCM_sys_activ_variables" |
---|
706 | fi |
---|
707 | |
---|
708 | # -------------------------------------------------------------------- |
---|
709 | #D- MPI specifications |
---|
710 | # -------------------------------------------------------------------- |
---|
711 | |
---|
712 | # -------------------------------------------------------------------- |
---|
713 | #D- Other specifications |
---|
714 | # -------------------------------------------------------------------- |
---|
715 | |
---|
716 | IGCM_debug_PopStack "IGCM_sys_activ_variables" |
---|
717 | } |
---|
718 | |
---|
719 | ############################################################ |
---|
720 | # Desactivate Running Environnment Variables |
---|
721 | |
---|
722 | #D-#================================================== |
---|
723 | #D-function IGCM_sys_desactiv_variables |
---|
724 | #D-* Purpose: unset environement variables after execution |
---|
725 | #D-* Examples: |
---|
726 | #D- |
---|
727 | function IGCM_sys_desactiv_variables { |
---|
728 | IGCM_debug_PushStack "IGCM_sys_desactiv_variables" |
---|
729 | if ( $DEBUG_sys ) ; then |
---|
730 | echo "IGCM_sys_desactiv_variables" |
---|
731 | fi |
---|
732 | # -------------------------------------------------------------------- |
---|
733 | #D- MPI specifications |
---|
734 | # -------------------------------------------------------------------- |
---|
735 | |
---|
736 | # -------------------------------------------------------------------- |
---|
737 | #D- Other specifications |
---|
738 | # -------------------------------------------------------------------- |
---|
739 | |
---|
740 | IGCM_debug_PopStack "IGCM_sys_desactiv_variables" |
---|
741 | } |
---|
742 | |
---|
743 | ############################################################ |
---|
744 | # Update job headers to be used by the scheduler |
---|
745 | |
---|
746 | #D-#================================================== |
---|
747 | #D-function IGCM_sys_updateHeaders |
---|
748 | #D-* Purpose: Update job headers to be used by the scheduler |
---|
749 | #D-* Examples: IGCM_sys_updateHeaders /path/to/Job_MYEXP |
---|
750 | #D- |
---|
751 | function IGCM_sys_updateHeaders { |
---|
752 | IGCM_debug_PushStack "IGCM_sys_updateHeaders" |
---|
753 | if ( $DEBUG_sys ) ; then |
---|
754 | echo "IGCM_sys_updateHeaders" |
---|
755 | fi |
---|
756 | typeset file |
---|
757 | file=$1 |
---|
758 | |
---|
759 | if [ ${executionType} -eq 1 ] ; then |
---|
760 | # MPMD + MPI |
---|
761 | sed -e "/::openMPthreads::/d" \ |
---|
762 | -e "s/::JobNumProcTot::/${coreNumber}/" \ |
---|
763 | ${file} > ${file}.tmp |
---|
764 | |
---|
765 | elif [ ${executionType} -eq 2 ] ; then |
---|
766 | # MPMD + MPI + OMP |
---|
767 | sed -e "s/::openMPthreads::/${openMPthreads}/" \ |
---|
768 | -e "s/::JobNumProcTot::/${coreNumber}/" \ |
---|
769 | ${file} > ${file}.tmp |
---|
770 | |
---|
771 | elif [ ${executionType} -eq 3 ] ; then |
---|
772 | # SPMD + MPI/OMP |
---|
773 | sed -e "s/::openMPthreads::/${openMPthreads}/" \ |
---|
774 | -e "s/::JobNumProcTot::/${mpiTasks}/" \ |
---|
775 | ${file} > ${file}.tmp |
---|
776 | |
---|
777 | elif [ ${executionType} -eq 4 ] ; then |
---|
778 | # SPMD + MPI only |
---|
779 | sed -e "s/::JobNumProcTot::/${mpiTasks}/" \ |
---|
780 | -e "/::openMPthreads::/d" \ |
---|
781 | ${file} > ${file}.tmp |
---|
782 | |
---|
783 | elif [ ${executionType} -eq 5 ] ; then |
---|
784 | # SPMD + OMP only |
---|
785 | sed -e "s/::openMPthreads::/${openMPthreads}/" \ |
---|
786 | -e "/::JobNumProcTot::/d" \ |
---|
787 | ${file} > ${file}.tmp |
---|
788 | |
---|
789 | elif [ ${executionType} -eq 6 ] ; then |
---|
790 | # SEQUENTIAL THEN |
---|
791 | sed -e "s/::JobNumProcTot::/1/" \ |
---|
792 | -e "/::openMPthreads::/d" \ |
---|
793 | ${file} > ${file}.tmp |
---|
794 | |
---|
795 | fi |
---|
796 | |
---|
797 | IGCM_sys_Mv ${file}.tmp ${file} |
---|
798 | |
---|
799 | IGCM_debug_PopStack "IGCM_sys_updateHeaders" |
---|
800 | } |
---|
801 | |
---|
802 | ############################################################ |
---|
803 | # Build MPI/OMP scripts run file (dummy function) |
---|
804 | |
---|
805 | #D-#================================================== |
---|
806 | #D-function IGCM_sys_build_run_file |
---|
807 | #D-* Purpose: build run file (deprecated) |
---|
808 | #D-* Examples: |
---|
809 | #D- |
---|
810 | function IGCM_sys_build_run_file { |
---|
811 | |
---|
812 | IGCM_debug_Print 3 " dummy function : IGCM_sys_build_run_file " |
---|
813 | |
---|
814 | } |
---|
815 | |
---|
816 | ############################################################ |
---|
817 | # Build MPI/OMP scripts |
---|
818 | |
---|
819 | #D-#================================================== |
---|
820 | #D-function IGCM_sys_build_execution_scripts |
---|
821 | #D-* Purpose: build execution scripts to be launch by ${HOST_MPIRUN_COMMAND} |
---|
822 | #D-* Examples: |
---|
823 | #D- |
---|
824 | function IGCM_sys_build_execution_scripts |
---|
825 | { |
---|
826 | IGCM_debug_PushStack "IGCM_sys_build_execution_scripts" $@ |
---|
827 | if ( $DEBUG_sys ) ; then |
---|
828 | echo "IGCM_sys_build_execution_scripts " $@ |
---|
829 | fi |
---|
830 | |
---|
831 | typeset NbNodes_Job NbProc_Job comp_proc_mpi_loc comp_proc_omp_loc mpi_count |
---|
832 | |
---|
833 | if [ ! -f ${SUBMIT_DIR}/Job_${config_UserChoices_JobName} ] ; then |
---|
834 | IGCM_debug_Exit "IGCM_sys_iitm build_execution_scripts : Job_${config_UserChoices_JobName} don't exist in SUBMIT_DIR : ${SUBMIT_DIR} " |
---|
835 | fi |
---|
836 | |
---|
837 | if ( ${OK_PARA_MPMD} ) ; then |
---|
838 | |
---|
839 | if [ -f run_file ] ; then |
---|
840 | IGCM_sys_Rm -f run_file |
---|
841 | fi |
---|
842 | touch run_file |
---|
843 | |
---|
844 | if ( ${OK_PARA_OMP} ) ; then |
---|
845 | # NEW : 2 Noeuds |
---|
846 | # @ task_geometry={(0)(1,2,3)} |
---|
847 | # Nombre de processus demandes |
---|
848 | echo "Job_${config_UserChoices_JobName} includes task_geometry = \c" |
---|
849 | cat ${SUBMIT_DIR}/Job_${config_UserChoices_JobName} | grep "task_geometry" | sed -e "s/[^(]*([^(]*/(/g" |
---|
850 | echo "Job_${config_UserChoices_JobName} includes task_geometry with NbNodes = \c" |
---|
851 | cat ${SUBMIT_DIR}/Job_${config_UserChoices_JobName} | grep "task_geometry" | sed -e "s/[^(]*([^(]*/(/g" | wc -c |
---|
852 | NbNodes_Job=$(( $( cat ${SUBMIT_DIR}/Job_${config_UserChoices_JobName} | grep "task_geometry" | sed -e "s/[^(]*([^(]*/(/g" | wc -c ) - 1 )) |
---|
853 | |
---|
854 | if [ ${NbNodes_Job} -eq 0 ] ; then |
---|
855 | IGCM_debug_Print 2 "Error in Job_${config_UserChoices_JobName} ressources : no task_geometry defined with OpenMP run." |
---|
856 | exit 1 |
---|
857 | fi |
---|
858 | else |
---|
859 | |
---|
860 | # OLD : |
---|
861 | # @ total_tasks = 3 |
---|
862 | # @ environment = "BATCH_NUM_PROC_TOT=3" |
---|
863 | # Pas d OpenMP |
---|
864 | # @ resources = ConsumableCpus(1) |
---|
865 | |
---|
866 | echo "Job_${config_UserChoices_JobName} includes total_tasks = \c" |
---|
867 | cat ${SUBMIT_DIR}/Job_${config_UserChoices_JobName} | grep "total_tasks" | sed -e "s/.*total_tasks = //" |
---|
868 | NbProc_Job=$( cat ${SUBMIT_DIR}/Job_${config_UserChoices_JobName} | grep "total_tasks" | sed -e "s/.*total_tasks = //" ) |
---|
869 | NbProc_Job=${NbProc_Job:=0} |
---|
870 | if [ ${NbProc_Job} -eq 0 ] ; then |
---|
871 | IGCM_debug_Print 2 "Error in Job_${config_UserChoices_JobName} ressources : no total_tasks defined with MPI only run." |
---|
872 | exit 1 |
---|
873 | fi |
---|
874 | if ( $( egrep '^# *@ *resources *= *ConsumableCpus\(1\)' ${SUBMIT_DIR}/Job_${config_UserChoices_JobName} >/dev/null 2>&1 ) ) ; then |
---|
875 | IGCM_debug_Print 2 "ressources = ConsumableCpus(1) line found into Job_${config_UserChoices_JobName}" |
---|
876 | else |
---|
877 | IGCM_debug_Print 2 "Error in Job_${config_UserChoices_JobName} ressources = line not found. Job should include resources = ConsumableCpus(1) " |
---|
878 | exit 1 |
---|
879 | fi |
---|
880 | fi |
---|
881 | |
---|
882 | # run_file construction |
---|
883 | |
---|
884 | # Then first loop on the components for the coupler ie oasis |
---|
885 | |
---|
886 | ### the coupler ie oasis must be the first one |
---|
887 | for comp in ${config_ListOfComponents[*]} ; do |
---|
888 | |
---|
889 | eval ExeNameIn=\${config_Executable_${comp}[0]} |
---|
890 | eval ExeNameOut=\${config_Executable_${comp}[1]} |
---|
891 | |
---|
892 | # for CPL component only |
---|
893 | if [ "X${comp}" = "XCPL" ] ; then |
---|
894 | |
---|
895 | eval comp_proc_mpi_loc=\${${comp}_PROC_MPI} |
---|
896 | eval comp_proc_omp_loc=\${${comp}_PROC_OMP} |
---|
897 | |
---|
898 | if ( ${OK_PARA_MPI} ) ; then |
---|
899 | (( mpi_count = 1 )) |
---|
900 | until [ ${mpi_count} -gt ${comp_proc_mpi_loc} ] ; do |
---|
901 | if ( ${OK_PARA_OMP} ) ; then |
---|
902 | echo "env OMP_NUM_THREADS=${comp_proc_omp_loc} ./${ExeNameOut} " >> run_file |
---|
903 | else |
---|
904 | echo "./${ExeNameOut}" >> run_file |
---|
905 | fi |
---|
906 | (( mpi_count = mpi_count + 1 )) |
---|
907 | done |
---|
908 | else |
---|
909 | if ( ${OK_PARA_OMP} ) ; then |
---|
910 | echo "env OMP_NUM_THREADS=${comp_proc_omp_loc} ./${ExeNameOut} " >> run_file |
---|
911 | else |
---|
912 | echo "./${ExeNameOut} " >> run_file |
---|
913 | fi |
---|
914 | fi |
---|
915 | fi |
---|
916 | done |
---|
917 | |
---|
918 | # Then second loop on the components |
---|
919 | |
---|
920 | for comp in ${config_ListOfComponents[*]} ; do |
---|
921 | |
---|
922 | eval ExeNameIn=\${config_Executable_${comp}[0]} |
---|
923 | eval ExeNameOut=\${config_Executable_${comp}[1]} |
---|
924 | |
---|
925 | # Only if we really have an executable for the component and not the coupler ie oasis: |
---|
926 | if ( [ "X${ExeNameOut}" != X\"\" ] && [ "X${comp}" != "XCPL" ] ) ; then |
---|
927 | |
---|
928 | eval comp_proc_mpi_loc=\${${comp}_PROC_MPI} |
---|
929 | eval comp_proc_omp_loc=\${${comp}_PROC_OMP} |
---|
930 | |
---|
931 | if ( ${OK_PARA_MPI} ) ; then |
---|
932 | (( mpi_count = 1 )) |
---|
933 | until [ ${mpi_count} -gt ${comp_proc_mpi_loc} ] ; do |
---|
934 | if ( ${OK_PARA_OMP} ) ; then |
---|
935 | echo "env OMP_NUM_THREADS=${comp_proc_omp_loc} ./${ExeNameOut} " >> run_file |
---|
936 | else |
---|
937 | echo "./${ExeNameOut}" >> run_file |
---|
938 | fi |
---|
939 | (( mpi_count = mpi_count + 1 )) |
---|
940 | done |
---|
941 | else |
---|
942 | if ( ${OK_PARA_OMP} ) ; then |
---|
943 | echo "env OMP_NUM_THREADS=${comp_proc_omp_loc} ./${ExeNameOut} " >> run_file |
---|
944 | else |
---|
945 | # to be tested : no MPI only OpenMP into MPMD mode |
---|
946 | echo "./${ExeNameOut} " >> run_file |
---|
947 | fi |
---|
948 | fi |
---|
949 | fi |
---|
950 | done |
---|
951 | |
---|
952 | EXECUTION="${HOST_MPIRUN_COMMAND} -pgmmodel mpmd -cmdfile ./run_file" |
---|
953 | |
---|
954 | IGCM_sys_Chmod u+x run_file |
---|
955 | if ( $DEBUG_sys ) ; then |
---|
956 | echo "run_file contains : " |
---|
957 | cat run_file |
---|
958 | fi |
---|
959 | |
---|
960 | # Only one executable (SPMD mode). |
---|
961 | else |
---|
962 | |
---|
963 | for comp in ${config_ListOfComponents[*]} ; do |
---|
964 | |
---|
965 | # Only if we really have an executable for the component : |
---|
966 | eval ExeNameOut=\${config_Executable_${comp}[1]} |
---|
967 | if ( [ "X${ExeNameOut}" != X\"\" ] && [ "X${ExeNameOut}" != "Xinca.dat" ] ) ; then |
---|
968 | EXECUTION="${HOST_MPIRUN_COMMAND} ./${ExeNameOut}" |
---|
969 | fi |
---|
970 | |
---|
971 | done |
---|
972 | |
---|
973 | fi |
---|
974 | |
---|
975 | IGCM_debug_Print 1 "sys iitm : execution command is" |
---|
976 | IGCM_debug_Print 1 "$EXECUTION" |
---|
977 | |
---|
978 | IGCM_debug_PopStack "IGCM_sys_build_execution_scripts" |
---|
979 | } |
---|
980 | |
---|
981 | #D-#================================================== |
---|
982 | #D-function IGCM_sys_check_path |
---|
983 | #D-* Purpose: check that RUN_DIR_PATH that will be removed on some machine |
---|
984 | #D-* do not point to an important use directory. Stop immediately in that case. |
---|
985 | #D-* Examples: |
---|
986 | #D- |
---|
987 | function IGCM_sys_check_path { |
---|
988 | IGCM_debug_PushStack "IGCM_sys_check_path" |
---|
989 | if ( $DEBUG_sys ) ; then |
---|
990 | echo "IGCM_sys_check_path" |
---|
991 | fi |
---|
992 | |
---|
993 | if ( [ X${RUN_DIR_PATH} = X${HOME} ] || [ X${RUN_DIR_PATH} = X${WORKDIR} ] || [ X${RUN_DIR_PATH} = X${ARCHIVE} ] ) ; then |
---|
994 | IGCM_debug_Print 1 "Variable RUN_DIR_PATH is pointing to an important directory : ${RUN_DIR_PATH}" |
---|
995 | IGCM_debug_Print 1 "Please check the RUN_DIR_PATH definition in your Job : Job_${config_UserChoices_JobName}" |
---|
996 | IGCM_debug_Exit "This will stop the job" |
---|
997 | fi |
---|
998 | IGCM_debug_PopStack "IGCM_sys_check_path" |
---|
999 | } |
---|
1000 | |
---|
1001 | #D-#================================================== |
---|
1002 | #D-function IGCM_sys_check_quota. Dummy call here |
---|
1003 | #D-* Purpose: check user quota. Stop the simulation if quota above 90% |
---|
1004 | #D-* Examples: |
---|
1005 | #D- |
---|
1006 | function IGCM_sys_check_quota { |
---|
1007 | IGCM_debug_PushStack "IGCM_sys_check_quota" |
---|
1008 | if ( $DEBUG_sys ) ; then |
---|
1009 | echo "IGCM_sys_check_quota" |
---|
1010 | fi |
---|
1011 | IGCM_debug_PopStack "IGCM_sys_check_quota" |
---|
1012 | } |
---|
1013 | |
---|
1014 | #D-#================================================== |
---|
1015 | #D-function IGCM_sys_CountJobInQueue |
---|
1016 | #D-* Purpose: Count number of users job |
---|
1017 | #D-* Examples: IGCM_sys_CountJobInQueue ${JobName} NbRun |
---|
1018 | #D- |
---|
1019 | function IGCM_sys_CountJobInQueue { |
---|
1020 | IGCM_debug_PushStack "IGCM_sys_CountJobInQueue" |
---|
1021 | if ( $DEBUG_sys ) ; then |
---|
1022 | echo "IGCM_sys_CountJobInQueue" |
---|
1023 | fi |
---|
1024 | |
---|
1025 | # Print only the full (-W) JobName (%jn) |
---|
1026 | NbRun=$( llq -W -f %jn | grep -c "$1" ) |
---|
1027 | |
---|
1028 | eval ${2}=${NbRun} |
---|
1029 | |
---|
1030 | IGCM_debug_PopStack "IGCM_sys_CountJobInQueue" |
---|
1031 | } |
---|