#!/bin/ksh #************************************************************** # Author: Sebastien Denvil, Martial Mancip # Contact: Martial.Mancip_ipsl.jussieu.fr # $Date$ # $Author$ # $Revision$ # IPSL (2006) # This software is governed by the CeCILL licence see libIGCM/libIGCM_CeCILL.LIC # History: # Modification: # #************************************************************** #========================================================= # The documentation of this file can be automatically generated # if you use the prefix #D- for comments to be extracted. # Extract with command: cat lib* | grep "^#D-" | cut -c "4-" #========================================================= #D-#================================================== #D-LibIGCM_sys for Mercure #D-#================================================== #D- #D- This ksh library if a layer under some usefull #D-environment variables and shell commands. #D-All those definitions depend on host particularities. #D-It manages a stack mechanism and test validity of operations. #D-All function described bellow must be prefixed by IGCM_sys. #==================================================== # libIGCM_sys PARAMETERS #==================================================== #==================================================== # set DEBUG_sys to true to output calls of function typeset -r DEBUG_sys=${DEBUG_sys:=true} #==================================================== # Turn in dry run mode ? (sys_Put_Rest, sys_Put_Out, sys_Get) typeset -r DRYRUN=${DRYRUN:=0} # YOU MUST COMPILE YOUR EXE FILES FOR DRYRUN MODE ! # ------------------------------------------------------------------------------------- # | DRYRUN= | Date computations, | sys_Get | Exe | sys_Put_Out; sys_Put_Rest | # | | Cp/Exe param files | | Chmod | | # | | Qsub | | | | # ------------------------------------------------------------------------------------- # | 0 | yes | yes | yes | yes | # ------------------------------------------------------------------------------------- # | 1 | yes | yes | yes | no | # ------------------------------------------------------------------------------------- # | 2 | yes | yes | no | no | # ------------------------------------------------------------------------------------- # | 3 | yes | no | no | no | # ------------------------------------------------------------------------------------- #===================================================== # Global Variables : #===================================================== # Language : "fr" or "en" typeset -r MYLANG="fr" #===================================================== # Host and user names # $hostname ou hostname typeset -r HOST=$( hostname ) # $username ou whoami typeset -r LOGIN=$( whoami ) #D- #D-#================================================== #D-Program used in libIGCM #D-#================================================== # rsync with path typeset -r RSYNC=/home/cont003/p86denv/SX_RSYNC/bin/rsync #typeset -r RSYNC_FRONT="rsh mercure-eth0 /usr/bin/rsync " # RSYNC_opt args to rsync typeset -r RSYNC_opt="-Lt -v" # RSYNC_opt args to "remote rsync" # ie storage filesystem typeset -r RHOST=fer.ccc.cea.fr typeset -r REMOTE_RSYNC=/dmnfs/cont003/p86denv/RSYNC/bin/rsync #==================================================== # Host specific DIRECTORIES #==================================================== #==================================================== #- R_EXE (==> BIN_DIR = ${MODIPSL}/bin ) typeset -r R_EXE="${MODIPSL}/bin" #==================================================== #- libIGCM_POST typeset -r libIGCM_POST=${libIGCM} #==================================================== #- SUBMIT_DIR : submission dir typeset -r SUBMIT_DIR=${SUBMIT_DIR:=${PBS_O_WORKDIR}} #==================================================== #- ARCHIVE typeset -r ARCHIVE=${DMFDIR} #==================================================== #- IN typeset -r R_IN=${R_IN:=/dmnfs/cont003/p86ipsl/IGCM} #==================================================== #- OUT typeset -r R_OUT=${ARCHIVE}/IGCM_OUT #==================================================== #- OUT_POST typeset -r R_OUT_POST=${SCRATCHDIR}/IGCM_OUT #==================================================== #- RUN_DIR_PATH : Temporary working directory (=> TMP) typeset -r RUN_DIR_PATH=${RUN_DIR_PATH:=${LOCALTMPDIR}} #==================================================== #- HOST_MPIRUN_COMMAND typeset -r HOST_MPIRUN_COMMAND=${HOST_MPIRUN_COMMAND:="mpirun"} #D-#================================================== #D-function IGCM_sys_RshPost #D-* Purpose: Master rsh command #D-* Examples: #D- function IGCM_sys_RshPost { IGCM_debug_PushStack "IGCM_sys_RshPost" $@ if ( $DEBUG_sys ) ; then echo "IGCM_sys_RshPost :" $@ fi /bin/ksh ${@} if [ $? -gt 0 ] ; then echo "IGCM_sys_RshPost : erreur." IGCM_debug_Exit "IGCM_sys_RshPost" fi IGCM_debug_PopStack "IGCM_sys_RshPost" } #D-#================================================== #D-function IGCM_sys_Mkdir #D-* Purpose: Master locale mkdir command #D-* Examples: #D- function IGCM_sys_Mkdir { IGCM_debug_PushStack "IGCM_sys_Mkdir" $@ if ( $DEBUG_sys ) ; then echo "IGCM_sys_Mkdir :" $@ fi if [ ! -d ${1} ]; then \mkdir -p $1 if [ $? -gt 0 ] ; then echo "IGCM_sys_Mkdir : erreur." IGCM_debug_Exit "IGCM_sys_Mkdir" fi fi # vérification : if [ ! -d ${1} ] ; then echo "IGCM_sys_Mkdir : erreur." IGCM_debug_Exit "IGCM_sys_Mkdir" fi IGCM_debug_PopStack "IGCM_sys_Mkdir" } #D-#================================================== #D-function IGCM_sys_MkdirArchive #D-* Purpose: Mkdir on Archive #D-* Examples: #D- function IGCM_sys_MkdirArchive { IGCM_debug_PushStack "IGCM_sys_MkdirArchive" $@ if ( $DEBUG_sys ) ; then echo "IGCM_sys_MkdirArchive :" $@ fi #- creation de repertoire sur le serveur fichier if [ ! -d ${1} ]; then \mkdir -p $1 if [ $? -gt 0 ] ; then echo "IGCM_sys_MkdirArchive : erreur." IGCM_debug_Exit "IGCM_sys_MkdirArchive" fi fi # vérification ?? : # if [ ! -d ${1} ] ; then # echo "IGCM_sys_MkdirArchive : erreur." # IGCM_debug_Exit "IGCM_sys_MkdirArchive" # fi IGCM_debug_PopStack "IGCM_sys_MkdirArchive" } #D-#================================================== #D-function IGCM_sys_MkdirWork #D-* Purpose: Mkdir on Work #D-* Examples: #D- function IGCM_sys_MkdirWork { IGCM_debug_PushStack "IGCM_sys_MkdirWork" $@ if ( $DEBUG_sys ) ; then echo "IGCM_sys_MkdirWork :" $@ fi #- creation de repertoire sur le serveur fichier if [ ! -d ${1} ]; then \mkdir -p $1 if [ $? -gt 0 ] ; then echo "IGCM_sys_MkdirWork : erreur." IGCM_debug_Exit "IGCM_sys_MkdirWork" fi fi # vérification ?? : if [ ! -d ${1} ] ; then echo "IGCM_sys_MkdirWork : erreur." IGCM_debug_Exit "IGCM_sys_MkdirWork" fi IGCM_debug_PopStack "IGCM_sys_MkdirWork" } #IGCM_sys_MkdirWork ${RUN_DIR_PATH} #echo "RUN_DIR_PATH ${RUN_DIR_PATH} ok." #D-#================================================== #D-function IGCM_sys_Cd #D-* Purpose: master cd command #D-* Examples: #D- function IGCM_sys_Cd { IGCM_debug_PushStack "IGCM_sys_Cd" $@ if ( $DEBUG_sys ) ; then echo "IGCM_sys_Cd :" $@ fi \cd $1 if [ $? -gt 0 ] ; then echo "IGCM_sys_Cd : erreur." IGCM_debug_Exit "IGCM_sys_Cd" fi IGCM_debug_PopStack "IGCM_sys_Cd" } #D-#================================================== #D-function IGCM_sys_Chmod #D-* Purpose: Chmod #D-* Examples: #D- function IGCM_sys_Chmod { IGCM_debug_PushStack "IGCM_sys_Chmod" -- $@ if ( $DEBUG_sys ) ; then echo "IGCM_sys_Chmod :" $@ fi if [ $DRYRUN -le 1 ]; then \chmod $@ if [ $? -gt 0 ] ; then echo "IGCM_sys_Chmod : erreur." IGCM_debug_Exit "IGCM_sys_Chmod" fi else echo "DRYRUN mode = " $DRYRUN >> stack fi IGCM_debug_PopStack "IGCM_sys_Chmod" } #D-#================================================== #D-function IGCM_sys_FileSize #D-* Purpose: Filesize #D-* Examples: #D- function IGCM_sys_FileSize { IGCM_debug_PushStack "IGCM_sys_FileSize" $@ typeset sizeF set +A sizeF -- $( ls -la ${1} ) if [ $? -gt 0 ] ; then IGCM_debug_Exit "IGCM_sys_FileSize" fi eval ${2}=${sizeF[4]} IGCM_debug_PopStack "IGCM_sys_FileSize" } #D-#================================================== #D-function IGCM_sys_TestDir #D-* Purpose: Test Directory that must exists #D-* Examples: #D- function IGCM_sys_TestDir { IGCM_debug_PushStack "IGCM_sys_TestDir" $@ if ( $DEBUG_sys ) ; then echo "IGCM_sys_TestDir :" $@ fi if [ ! -d ${1} ]; then echo "IGCM_sys_TestDir : Directory $1 does not exist." IGCM_debug_Exit "IGCM_sys_TestDir" fi IGCM_debug_PopStack "IGCM_sys_TestDir" } #D-#================================================== #D-function IGCM_sys_TestDirArchive #D-* Purpose: Test Directory that must exists on Archive #D-* Examples: #D- function IGCM_sys_TestDirArchive { IGCM_debug_PushStack "IGCM_sys_TestDirArchive" $@ if ( $DEBUG_sys ) ; then echo "IGCM_sys_TestDirArchive :" $@ fi if [ ! -d ${1} ]; then echo "IGCM_sys_TestDirArchive : Directory $1 does not exist on ${ARCHIVE}." IGCM_debug_Exit "IGCM_sys_TestDirArchive" fi IGCM_debug_PopStack "IGCM_sys_TestDirArchive" } #D-#================================================== #D-function IGCM_sys_TestFileArchive #D-* Purpose: Test file that must NOT EXISTS on Archive #D-* Examples: #D- function IGCM_sys_TestFileArchive { IGCM_debug_PushStack "IGCM_sys_TestFileArchive" $@ if ( $DEBUG_sys ) ; then echo "IGCM_sys_TestFileArchive :" $@ fi if [ ! -f ${1} ]; then IGCM_debug_PopStack "IGCM_sys_TestFileArchive" return 1 else IGCM_debug_PopStack "IGCM_sys_TestFileArchive" return 0 fi } #D-#================================================== #D-function IGCM_sys_Tree #D-* Purpose: Tree directories with files on ${ARCHIVE} #D-* Examples: IGCM_sys_Tree ${R_IN} ${R_OUT} #D- function IGCM_sys_Tree { IGCM_debug_PushStack "IGCM_sys_Tree" $@ if ( $DEBUG_sys ) ; then echo "IGCM_sys_Tree :" $@ fi \ls -lR ${@} IGCM_debug_PopStack "IGCM_sys_Tree" } #D-#================================================== #D-function IGCM_sys_Tar #D-* Purpose: master un-tar command #D-* Examples: #D- function IGCM_sys_Tar { IGCM_debug_PushStack "IGCM_sys_Tar" $@ if ( $DEBUG_sys ) ; then echo "IGCM_sys_Tar :" $@ fi \tar xvf $1 if [ $? -gt 0 ] ; then echo "IGCM_sys_Tar : erreur." IGCM_debug_Exit "IGCM_sys_Tar" fi IGCM_debug_PopStack "IGCM_sys_Tar" } #D-#================================================== #D-function IGCM_sys_UnTar #D-* Purpose: master un-tar command #D-* Examples: #D- function IGCM_sys_UnTar { IGCM_debug_PushStack "IGCM_sys_UnTar" $@ if ( $DEBUG_sys ) ; then echo "IGCM_sys_UnTar :" $@ fi \tar xvf $1 if [ $? -gt 0 ] ; then echo "IGCM_sys_UnTar : erreur." IGCM_debug_Exit "IGCM_sys_UnTar" fi IGCM_debug_PopStack "IGCM_sys_UnTar" } #D-#================================================== #D-function IGCM_sys_Qsub #D-* Purpose: Qsub new job #D-* Examples: #D- function IGCM_sys_Qsub { IGCM_debug_PushStack "IGCM_sys_Qsub" $@ if ( $DEBUG_sys ) ; then echo "IGCM_sys_Qsub :" $@ fi /usr/bin/nqsII/qsub -o ${Script_Output} -N ${config_UserChoices_JobName}.${CumulPeriod} < $1 if [ $? -gt 0 ] ; then echo "IGCM_sys_Qsub : erreur -o ${Script_Output} -N ${config_UserChoices_JobName}.${CumulPeriod} $@." IGCM_debug_Exit "IGCM_sys_Qsub" fi IGCM_debug_PopStack "IGCM_sys_Qsub" } #D-#================================================== #D-function IGCM_sys_QsubPost #D-* Purpose: Qsub new job on scalaire #D-* Examples: #D- function IGCM_sys_QsubPost { IGCM_debug_PushStack "IGCM_sys_QsubPost" $@ if ( $DEBUG_sys ) ; then echo "IGCM_sys_QsubPost :" $@ fi /usr/bin/nqsII/qsub -q scalaire -o ${POST_DIR}/$1.${PeriodDateEnd}.out ${libIGCM_POST}/$1.job -v ${listVarEnv} if [ $? -gt 0 ] ; then echo "IGCM_sys_QsubPost : erreur " $@ IGCM_debug_Exit "IGCM_sys_QsubPost" fi IGCM_debug_PopStack "IGCM_sys_QsubPost" } #D-************************* #D- File transfer functions #D-************************* #D- #D-#================================================== #D-function IGCM_sys_Rsync_out #D-* Purpose: treat return val of rsync #D-* Examples: IGCM_sys_Rsync_out out_RET_rsync #D- Error values and explanations can depend on your system version. function IGCM_sys_Rsync_out { RET=$1 if [ ! $RET ] ; then echo "rsync error !" fi if [ $MYLANG = "fr" ]; then case $RET in 0) return ;; 1) echo "Erreur de rsync ; RERR_SYNTAX : " echo "Erreur de syntaxe ou d'utilisation." return;; 2) echo "Erreur de rsync ; RERR_PROTOCOL : " echo "Incompatibilité de protocole." return;; 3) echo "Erreur de rsync ; RERR_FILESELECT 3" echo "Erreurs lors de la sélection des fichiers d'entrée sortie et" echo "répertoires" return;; 4) echo "Erreur de rsync ; RERR_UNSUPPORTED" echo "Action demandée non supportée : une tentative de manipulation de" echo "fichiers 64-bits sur une plate-forme qui ne les supporte pas a" echo "été faite ; ou une option qui est supportée par le client mais" echo "pas par le serveur a été spécifiée." return;; 10) echo "Erreur de rsync ; RERR_SOCKETIO" echo "Erreur dans le socket d'entrée sortie" return;; 11) echo "Erreur de rsync ; RERR_FILEIO" echo "Erreur d'entrée sortie fichier" return;; 12) echo "Erreur de rsync ; RERR_STREAMIO" echo "Erreur dans flux de donnée du protocole rsync" return;; 13) echo "Erreur de rsync ; RERR_MESSAGEIO" echo "Erreur avec les diagnostics du programme" return;; 14) echo "Erreur de rsync ; RERR_IPC" echo "Erreur dans le code IPC" return;; 20) echo "Erreur de rsync ; RERR_SIGNAL" echo "SIGUSR1 ou SIGINT reçu" return;; 21) echo "Erreur de rsync ; RERR_WAITCHILD" echo "Une erreur retournée par waitpid()" return;; 22) echo "Erreur de rsync ; RERR_MALLOC" echo "Erreur lors de l'allocation des tampons de mémoire de coeur" return;; 23) echo "" echo "Erreur fichier inexistant" return;; 30) echo "Erreur de rsync ; RERR_TIMEOUT" echo "Temps d'attente écoulé dans l'envoi/réception de données" return;; *) echo "Erreur de rsync : code de retour de rsync inconnu :" $RET return;; esac elif [ $MYLANG = "en" ] ; then case $RET in 0) return;; 1) echo "rsync error : Syntax or usage error " return;; 2) echo "rsync error : Protocol incompatibility " return;; 3) echo "rsync error : Errors selecting input/output files, dirs" return;; 4) echo "rsync error : Requested action not supported: an attempt" echo "was made to manipulate 64-bit files on a platform that cannot support" echo "them; or an option was specified that is supported by the client and" echo "not by the server." return;; 5) echo "rsync error : Error starting client-server protocol" return;; 10) echo "rsync error : Error in socket I/O " return;; 11) echo "rsync error : Error in file I/O " return;; 12) echo "rsync error : Error in rsync protocol data stream " return;; 13) echo "rsync error : Errors with program diagnostics " return;; 14) echo "rsync error : Error in IPC code " return;; 20) echo "rsync error : Received SIGUSR1 or SIGINT " return;; 21) echo "rsync error : Some error returned by waitpid() " return;; 22) echo "rsync error : Error allocating core memory buffers " return;; 23) echo "rsync error : Partial transfer due to error" return;; 24) echo "rsync error : Partial transfer due to vanished source files" return;; 30) echo "rsync error : Timeout in data send/receive " return;; *) echo "rsync error : return code of rsync unknown :" $RET return;; esac else echo "unknown language $MYLANG." return fi } #D-#================================================== #D-function IGCM_sys_Cp #D-* Purpose: generic cp #D-* Examples: #D- function IGCM_sys_Cp { IGCM_debug_PushStack "IGCM_sys_Cp" $@ if ( $DEBUG_sys ) ; then echo "IGCM_sys_Cp :" $@ fi typeset RET echo cp $@ > out_rsync 2>&1 \cp $@ >> out_rsync 2>&1 RET=$? if [ ${RET} -gt 0 ] ; then echo "IGCM_sys_Cp : error." cat out_rsync IGCM_debug_Exit "IGCM_sys_Cp" fi IGCM_debug_PopStack "IGCM_sys_Cp" } #D-#================================================== #D-function IGCM_sys_Mv #D-* Purpose: generic move #D-* Examples: #D- function IGCM_sys_Mv { IGCM_debug_PushStack "IGCM_sys_Mv" $@ if ( $DEBUG_sys ) ; then echo "IGCM_sys_Mv :" $@ fi typeset RET echo mv $@ > out_rsync 2>&1 \mv $@ >> out_rsync 2>&1 RET=$? if [ ${RET} -gt 0 ] ; then echo "IGCM_sys_Mv : error in mv." cat out_rsync IGCM_debug_Exit "IGCM_sys_Mv" fi IGCM_debug_PopStack "IGCM_sys_Mv" } #D-#================================================== #D-function IGCM_sys_Put_Rest #D-* Purpose: Put computied restarts on $(ARCHIVE). #D- File and target directory must exist. #D-* Examples: #D- function IGCM_sys_Put_Rest { IGCM_debug_PushStack "IGCM_sys_Put_Rest" $@ if ( $DEBUG_sys ) ; then echo "IGCM_sys_Put_Rest :" $@ fi if [ $DRYRUN = 0 ]; then if [ ! -f ${1} ] ; then echo "ERROR : IGCM_sys_Put_Rest ${1} DOES NOT EXIST ." IGCM_debug_Exit "IGCM_sys_Put_Rest" fi typeset RET # IGCM_sys_Chmod 444 ${1} # IGCM_sys_TestDirArchive $( dirname $2 ) # # USUAL WAY putfer $1 $2 > out_rsync 2>&1 RET=$? # #RSYNC WITH NETWORK RSH CALL # echo ${RSYNC_FRONT} ${RSYNC_opt} --rsync-path=${REMOTE_RSYNC} -e rsh ${RUN_DIR}/$1 ${RHOST}:${2} > out_rsync 2>&1 # ${RSYNC_FRONT} ${RSYNC_opt} --rsync-path=${REMOTE_RSYNC} -e rsh ${RUN_DIR}/$1 ${RHOST}:${2} >> out_rsync 2>&1 # #RSYNC WITH NFS USE # echo ${RSYNC_FRONT} ${RSYNC_opt} ${RUN_DIR}/$1 ${2} > out_rsync 2>&1 # ${RSYNC_FRONT} ${RSYNC_opt} ${RUN_DIR}/$1 ${2} >> out_rsync 2>&1 # RET=$? # IGCM_sys_Rsync_out $RET # ${libIGCM}/libIGCM_sys/IGCM_analyse_rsync_out.awk out_rsync # (( RET=RET+$? )) if [ ${RET} -gt 0 ] ; then echo "IGCM_sys_Put_Rest : error." cat out_rsync IGCM_debug_Exit "IGCM_sys_Put_Rest" fi else echo "DRYRUN mode = " $DRYRUN >> stack fi IGCM_debug_PopStack "IGCM_sys_Put_Rest" } #D-#================================================== #D-function IGCM_sys_Put_Out #D-* Purpose: Copy a file on $(ARCHIVE) after have chmod it in readonly #D-* Examples: #D- function IGCM_sys_Put_Out { IGCM_debug_PushStack "IGCM_sys_Put_Out" $@ if ( $DEBUG_sys ) ; then echo "IGCM_sys_Put_Out :" $@ fi if [ $DRYRUN = 0 ]; then if [ ! -f ${1} ] ; then echo "WARNING : IGCM_sys_Put_Out ${1} DOES NOT EXIST ." IGCM_debug_PopStack "IGCM_sys_Put_Out" return 1 fi # IGCM_sys_MkdirArchive $( dirname $2 ) # typeset RET #===================================================== # COMMENT OUT DOUBLE COPY ON SCRATCHDIR #===================================================== #echo ${2} | grep "${R_OUT}" > /dev/null 2>&1 #if [ $? -eq 0 ] ; then # typeset WORKPATH FILEPATH # WORKPATH=$( dirname $2 | sed -e "s|${R_OUT}|${R_OUT_SCR}|" ) # IGCM_sys_MkdirWork ${WORKPATH} # FILEPATH=${WORKPATH}/$( basename $2 ) # # # IGCM_sys_Cp ${1} ${FILEPATH} #fi IGCM_sys_Chmod 444 ${1} # # USUAL WAY putfer $1 $2 > out_rsync 2>&1 RET=$? # #RSYNC WITH NETWORK RSH CALL # echo ${RSYNC_FRONT} ${RSYNC_opt} --rsync-path=${REMOTE_RSYNC} -e rsh ${RUN_DIR}/$1 ${RHOST}:${2} > out_rsync 2>&1 # ${RSYNC_FRONT} ${RSYNC_opt} --rsync-path=${REMOTE_RSYNC} -e rsh ${RUN_DIR}/$1 ${RHOST}:${2} >> out_rsync 2>&1 # #RSYNC WITH NFS USE # echo ${RSYNC_FRONT} ${RSYNC_opt} ${RUN_DIR}/$1 ${2} > out_rsync 2>&1 # ${RSYNC_FRONT} ${RSYNC_opt} ${RUN_DIR}/$1 ${2} >> out_rsync 2>&1 # RET=$? # IGCM_sys_Rsync_out $RET # ${libIGCM}/libIGCM_sys/IGCM_analyse_rsync_out.awk out_rsync # (( RET=RET+$? )) if [ ${RET} -gt 0 ] ; then echo "IGCM_sys_Put_Out : error." cat out_rsync IGCM_debug_Exit "IGCM_sys_Put_Out" fi else echo "DRYRUN mode = " $DRYRUN >> stack fi IGCM_debug_PopStack "IGCM_sys_Put_Out" return 0 } #D-#================================================== #D-function IGCM_sys_Get #D-* Purpose: Get a file from ${ARCHIVE} #D-* Examples: IGCM_sys_Get myfile /destpath/myfile_with_PREFIX #D- IGCM_sys_Get /l Array_contain_myfiles /destpath/ function IGCM_sys_Get { IGCM_debug_PushStack "IGCM_sys_Get" $@ typeset DEST RET dm_liste ifile target file_work if ( $DEBUG_sys ) ; then echo "IGCM_sys_Get :" $@ fi if [ $DRYRUN -le 2 ]; then if [ X${1} = X'/l' ] ; then # test if the first file is present in the old computation : eval set +A dm_liste \${${2}} else eval set +A dm_liste ${1} fi eval DEST=\${${#}} #===================================================== # COMMENT OUT DOUBLE COPY ON SCRATCHDIR #===================================================== # Is it an R_OUT file (not R_IN) ? #echo ${dm_liste[0]} | grep "${R_OUT}" > /dev/null 2>&1 #if [ $? -eq 0 ] ; then # # Yes ? then we try to get it in SCRATCHDIR # set +A file_work $( echo ${dm_liste[*]} | sed -e "s|${R_OUT}|${R_OUT_SCR}|" ) # if [ -f ${file_work[0]} ] ; then # IGCM_sys_Cp ${file_work[*]} ${DEST} # IGCM_debug_PopStack "IGCM_sys_Get" # return # fi #fi # test if the (first) file is present in the old computation : IGCM_sys_TestFileArchive ${dm_liste[0]} RET=$? if [ ${RET} -gt 0 ] ; then echo "IGCM_sys_Get, ERROR : regular file ${dm_liste[0]} DOES NOT EXIST ." IGCM_debug_Exit "IGCM_sys_Get" IGCM_debug_PopStack "IGCM_sys_Get" return fi dmget ${dm_liste[*]} > out_rsync 2>&1 RET=$? if [ ${RET} -gt 0 ] ; then echo "IGCM_sys_Get : demigration error." cat out_rsync IGCM_debug_Exit "IGCM_sys_Get" fi #USUAL WAY if [ X${1} = X'/l' ] ; then (( RET=0 )) for target in ${dm_liste[*]} ; do local_file=$( basename ${target} ) \cp ${target} ${DEST}/${local_file} >> out_rsync 2>&1 (( RET = RET + $? )) done else \cp ${dm_liste} ${DEST} >> out_rsync 2>&1 RET=$? fi # #RSYNC WITH NETWORK RSH CALL # echo ${RSYNC_FRONT} ${RSYNC_opt} --rsync-path=${REMOTE_RSYNC} -e rsh ${RHOST}:"${dm_liste}" ${RHOST}:${RUN_DIR}/${DEST} > out_rsync 2>&1 # ${RSYNC_FRONT} ${RSYNC_opt} --rsync-path=${REMOTE_RSYNC} -e rsh ${RHOST}:"${dm_liste}" ${RHOST}:${RUN_DIR}/${DEST} >> out_rsync 2>&1 # #RSYNC WITH NFS USE # echo ${RSYNC_FRONT} ${RSYNC_opt} ${dm_liste} ${RUN_DIR}/${DEST} > out_rsync 2>&1 # ${RSYNC_FRONT} ${RSYNC_opt} ${dm_liste} ${RUN_DIR}/${DEST} >> out_rsync 2>&1 # RET=$? # IGCM_sys_Rsync_out $RET # ${libIGCM}/libIGCM_sys/IGCM_analyse_rsync_out.awk out_rsync # (( RET=RET+$? )) if [ ${RET} -gt 0 ] ; then echo "IGCM_sys_Get : copy error." cat out_rsync IGCM_debug_Exit "IGCM_sys_Get" fi else echo "DRYRUN mode = " $DRYRUN >> stack fi IGCM_debug_PopStack "IGCM_sys_Get" } ############################################################## A REVOIR !! #D-#================================================== #D-function IGCM_sys_Rapatrie #D-* Purpose: Rapatrie #D-* Examples: #D- function IGCM_sys_Rapatrie { IGCM_debug_PushStack "IGCM_sys_Rapatrie" $@ if ( $DEBUG_sys ) ; then echo "IGCM_sys_Rapatrie :" $@ fi typeset RET=0 IGCM_sys_Get ${R_STOCKAGE}/$2 $1 ; let $(( RET=RET+$? )) IGCM_sys_Cd $1 ; let $(( RET=RET+$? )) IGCM_sys_UnTar $2 ; let $(( RET=RET+$? )) if [ ${RET} -gt 0 ] ; then echo "IGCM_sys_Rapatrie : erreur." IGCM_debug_Exit "IGCM_sys_Rapatrie" fi IGCM_debug_PopStack "IGCM_sys_Rapatrie" } ############################################################## A FINIR !! #D-#================================================== #D-function IGCM_sys_GetDate_FichWork #D-* Purpose: donne la date filesys d'un fichier sur le filesystem WORK #D-* Examples: #D- function IGCM_sys_GetDate_FichWork { IGCM_debug_PushStack "IGCM_sys_FichWork" $@ if ( $DEBUG_sys ) ; then echo "IGCM_sys_GetDate_FichWork :" $@ fi # donne la date filesys d'un fichier sur la machine work IGCM_debug_PopStack "IGCM_sys_FichWork" } #D-#================================================== #D-function IGCM_sys_GetDate_FichArchive #D-* Purpose: donne la date filesys d'un fichier sur le filesystem ARCHIVE #D-* Examples: #D- function IGCM_sys_GetDate_FichArchive { IGCM_debug_PushStack "IGCM_sys_FichArchive" $@ if ( $DEBUG_sys ) ; then echo "IGCM_sys_GetDate_FichArchive :" $@ fi IGCM_debug_PopStack "IGCM_sys_FichArchive" } ############################################################## # REBUILD OPERATOR function IGCM_sys_rebuild { IGCM_debug_PushStack "IGCM_sys_rebuild" -- $@ if ( $DEBUG_sys ) ; then echo "IGCM_sys_rebuild :" $@ fi /home/cont003/p86ipsl/SX/bin/rebuild -f -o $@ if [ $? -gt 0 ] ; then echo "IGCM_sys_rebuild : erreur ${@}." IGCM_debug_Exit "rebuild" fi IGCM_debug_PopStack "IGCM_sys_rebuild" } ############################################################ # Activate Running Environnment Variables function IGCM_sys_activ_variables { IGCM_debug_PushStack "IGCM_sys_activ_variables" if ( $DEBUG_sys ) ; then echo "IGCM_sys_activ_variables" fi # -------------------------------------------------------------------- #D- MPI specifications # -------------------------------------------------------------------- #D-- MPISUSPEND export MPISUSPEND=ON #D-- MPIPROGINF export MPIPROGINF=ALL #other choices : ALL_DETAIL2 # -------------------------------------------------------------------- #D- Other specifications # -------------------------------------------------------------------- #D- max number of character/line in output job export F_SYSLEN=5000 #D- number of error that can be admitted on the NEC export F_ERRCNT=0 #D- global performance export F_PROGINF=DETAIL #D- activate ftrace (with -ftrace) export F_FTRACE=YES #D- communication information (with -ftrace) export MPICOMMINF=NO #D- I/O performance (FORTRAN I/O only not netCDF) export F_FILEINF=NO # netCDF I/O performance export NC_FILEINF=NO IGCM_debug_PopStack "IGCM_sys_activ_variables" } ############################################################ # Desactivate Running Environnment Variables function IGCM_sys_desactiv_variables { IGCM_debug_PushStack "IGCM_sys_desactiv_variables" if ( $DEBUG_sys ) ; then echo "IGCM_sys_desactiv_variables" fi # -------------------------------------------------------------------- #D- MPI specifications # -------------------------------------------------------------------- #D-- MPIPROGINF export MPIPROGINF=NO # -------------------------------------------------------------------- #D- Other specifications # -------------------------------------------------------------------- #D- global performance export F_PROGINF=NO IGCM_debug_PopStack "IGCM_sys_desactiv_variables" } ############################################################ # Build run file function IGCM_sys_build_run_file { IGCM_debug_PushStack "IGCM_sys_build_run_file" $@ if ( $DEBUG_sys ) ; then echo "IGCM_sys_build_run_file " $@ fi (( NUM_PROC_ATM = BATCH_NUM_PROC_TOT - 1 )) (( NUM_PROC_OASIS = BATCH_NUM_PROC_TOT - NUM_PROC_ATM )) (( NUM_PROC_OCE = BATCH_NUM_PROC_TOT - NUM_PROC_ATM )) if [ $1 = MPI2 ]; then cat < run_file -p 1 -np 1 -e ./oasis EOF (( NUM_PROCESS = BATCH_NUM_PROC_TOT + 1 )) config_UserChoices_JobRunOptions='"-max_np ${NUM_PROCESS} -f"' elif [ $1 = MPI1 ]; then cat < run_file -p $NUM_PROC_OASIS -e ./oasis -p $NUM_PROC_ATM -e ./lmdz.x -p $NUM_PROC_OCE -e ./opa.xx EOF fi IGCM_debug_PopStack "IGCM_sys_build_run_file" }