[192] | 1 | #!/bin/ksh |
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[2] | 2 | |
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| 3 | #************************************************************** |
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| 4 | # Author: Sebastien Denvil, Martial Mancip |
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[373] | 5 | # Contact: Martial.Mancip__at__ipsl.jussieu.fr |
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| 6 | # $Revision:: $ Revision of last commit |
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| 7 | # $Author:: $ Author of last commit |
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| 8 | # $Date:: $ Date of last commit |
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[2] | 9 | # IPSL (2006) |
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| 10 | # This software is governed by the CeCILL licence see libIGCM/libIGCM_CeCILL.LIC |
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| 11 | # |
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| 12 | #************************************************************** |
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| 13 | |
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| 14 | #========================================================= |
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| 15 | # The documentation of this file can be automatically generated |
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| 16 | # if you use the prefix #D- for comments to be extracted. |
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| 17 | # Extract with command: cat lib* | grep "^#D-" | cut -c "4-" |
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| 18 | #========================================================= |
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| 19 | |
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| 20 | #D-#================================================== |
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[192] | 21 | #D-LibIGCM_sys for Mercure SX8-R |
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[2] | 22 | #D-#================================================== |
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| 23 | #D- |
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| 24 | #D- This ksh library if a layer under some usefull |
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| 25 | #D-environment variables and shell commands. |
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| 26 | #D-All those definitions depend on host particularities. |
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| 27 | #D-It manages a stack mechanism and test validity of operations. |
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| 28 | #D-All function described bellow must be prefixed by IGCM_sys. |
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| 29 | |
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| 30 | #==================================================== |
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| 31 | # libIGCM_sys PARAMETERS |
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| 32 | #==================================================== |
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| 33 | |
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[111] | 34 | # gawk specific location on SX9 |
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| 35 | export PATH=/applications/gawk-3.0.4/bin:${PATH} |
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| 36 | |
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[2] | 37 | #==================================================== |
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| 38 | # set DEBUG_sys to true to output calls of function |
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| 39 | typeset -r DEBUG_sys=${DEBUG_sys:=true} |
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| 40 | |
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| 41 | #==================================================== |
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| 42 | # Turn in dry run mode ? (sys_Put_Rest, sys_Put_Out, sys_Get) |
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| 43 | typeset -r DRYRUN=${DRYRUN:=0} |
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| 44 | |
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| 45 | # YOU MUST COMPILE YOUR EXE FILES FOR DRYRUN MODE ! |
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| 46 | # ------------------------------------------------------------------------------------- |
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| 47 | # | DRYRUN= | Date computations, | sys_Get | Exe | sys_Put_Out; sys_Put_Rest | |
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| 48 | # | | Cp/Exe param files | | Chmod | | |
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| 49 | # | | Qsub | | | | |
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| 50 | # ------------------------------------------------------------------------------------- |
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| 51 | # | 0 | yes | yes | yes | yes | |
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| 52 | # ------------------------------------------------------------------------------------- |
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| 53 | # | 1 | yes | yes | yes | no | |
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| 54 | # ------------------------------------------------------------------------------------- |
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| 55 | # | 2 | yes | yes | no | no | |
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| 56 | # ------------------------------------------------------------------------------------- |
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| 57 | # | 3 | yes | no | no | no | |
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| 58 | # ------------------------------------------------------------------------------------- |
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| 59 | |
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| 60 | #===================================================== |
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| 61 | # Global Variables : |
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| 62 | #===================================================== |
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| 63 | # Language : "fr" or "en" |
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| 64 | typeset -r MYLANG="fr" |
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| 65 | |
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| 66 | #===================================================== |
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[192] | 67 | # Host and user names |
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| 68 | # $hostname ou hostname |
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[228] | 69 | typeset HOST=${HOST:=$( hostname )} |
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[2] | 70 | # $username ou whoami |
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[228] | 71 | typeset LOGIN=${LOGIN:=$( whoami )} |
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[71] | 72 | # $hostname of the MASTER job |
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[80] | 73 | typeset -r MASTER=mercure |
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[2] | 74 | |
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| 75 | #D- |
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| 76 | #D-#================================================== |
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| 77 | #D-Program used in libIGCM |
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| 78 | #D-#================================================== |
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| 79 | |
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| 80 | # rsync with path |
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| 81 | typeset -r RSYNC=/home/cont003/p86denv/SX_RSYNC/bin/rsync |
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| 82 | # RSYNC_opt args to rsync |
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[192] | 83 | typeset -r RSYNC_opt="-va" |
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[2] | 84 | # ie storage filesystem |
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[192] | 85 | typeset -r RHOST=mercure |
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[2] | 86 | |
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| 87 | #==================================================== |
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| 88 | # Host specific DIRECTORIES |
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| 89 | #==================================================== |
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| 90 | |
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| 91 | #==================================================== |
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| 92 | #- R_EXE (==> BIN_DIR = ${MODIPSL}/bin ) |
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| 93 | typeset -r R_EXE="${MODIPSL}/bin" |
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| 94 | |
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| 95 | #==================================================== |
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| 96 | #- SUBMIT_DIR : submission dir |
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[44] | 97 | typeset SUBMIT_DIR=${SUBMIT_DIR:=${PBS_O_WORKDIR}} |
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[2] | 98 | |
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| 99 | #==================================================== |
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| 100 | #- ARCHIVE |
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| 101 | typeset -r ARCHIVE=${DMFDIR} |
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| 102 | |
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[257] | 103 | # ============ CESIUM START ============ # |
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| 104 | |
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[2] | 105 | #==================================================== |
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[257] | 106 | #- Mirror libIGCM from mercure to cesium if needed |
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| 107 | #ROOTSYS=$( echo ${libIGCM} | gawk -F"/" '{print $2}' ) |
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| 108 | #if [ ! ${ROOTSYS} = "home" ] ; then |
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| 109 | # typeset -r MirrorlibIGCM=${MirrorlibIGCM:=true} |
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| 110 | #else |
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| 111 | # typeset -r MirrorlibIGCM=${MirrorlibIGCM:=false} |
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| 112 | #fi |
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| 113 | |
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| 114 | #==================================================== |
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[214] | 115 | #- libIGCM_POST |
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[257] | 116 | #if ( ${MirrorlibIGCM} ) ; then |
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| 117 | # PATHlibIGCM=$( echo ${libIGCM} | gawk -F"${LOGIN}/" '{print $2}' | sed -e "s&/libIGCM&&" ) |
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| 118 | # typeset -r libIGCM_POST=${HOME}/MIRROR/${PATHlibIGCM}/libIGCM |
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| 119 | #else |
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| 120 | # typeset -r libIGCM_POST=${libIGCM} |
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| 121 | #fi |
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| 122 | |
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| 123 | # ============ CESIUM END ============ # |
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| 124 | |
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| 125 | #==================================================== |
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| 126 | #- Mirror libIGCM from mercure to cesium if needed |
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| 127 | typeset -r MirrorlibIGCM=${MirrorlibIGCM:=false} |
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| 128 | |
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| 129 | #==================================================== |
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| 130 | #- libIGCM_POST |
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[214] | 131 | typeset -r libIGCM_POST=${libIGCM} |
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| 132 | |
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| 133 | #==================================================== |
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[2] | 134 | #- IN |
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| 135 | typeset -r R_IN=${R_IN:=/dmnfs/cont003/p86ipsl/IGCM} |
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| 136 | |
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| 137 | #==================================================== |
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| 138 | #- OUT |
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| 139 | typeset -r R_OUT=${ARCHIVE}/IGCM_OUT |
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| 140 | |
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| 141 | #==================================================== |
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| 142 | #- OUT_POST |
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| 143 | typeset -r R_OUT_POST=${SCRATCHDIR}/IGCM_OUT |
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| 144 | |
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| 145 | #==================================================== |
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| 146 | #- RUN_DIR_PATH : Temporary working directory (=> TMP) |
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| 147 | typeset -r RUN_DIR_PATH=${RUN_DIR_PATH:=${LOCALTMPDIR}} |
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| 148 | |
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| 149 | #==================================================== |
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[156] | 150 | #- BIG_DIR : BIG_DIR to store files waiting for rebuild |
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| 151 | typeset -r BIG_DIR=${BIG_DIR:=${SCRATCHDIR}/REBUILD} |
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| 152 | |
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| 153 | #==================================================== |
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[2] | 154 | #- HOST_MPIRUN_COMMAND |
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| 155 | typeset -r HOST_MPIRUN_COMMAND=${HOST_MPIRUN_COMMAND:="mpirun"} |
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| 156 | |
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[61] | 157 | #==================================================== |
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| 158 | #- Max number of arguments passed to nco operator or demigration command |
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| 159 | UNIX_MAX_LIMIT=360 |
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| 160 | |
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[2] | 161 | #D-#================================================== |
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[37] | 162 | #D-function IGCM_sys_RshArchive |
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| 163 | #D-* Purpose: Archive rsh command |
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| 164 | #D-* Examples: |
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| 165 | #D- |
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| 166 | function IGCM_sys_RshArchive { |
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| 167 | IGCM_debug_PushStack "IGCM_sys_RshArchive" $@ |
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[40] | 168 | /bin/ksh <<-EOF |
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| 169 | ${@} |
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| 170 | EOF |
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[37] | 171 | if [ $? -gt 0 ] ; then |
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| 172 | echo "IGCM_sys_RshArchive : erreur." |
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| 173 | IGCM_debug_Exit "IGCM_sys_RshArchive" |
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| 174 | fi |
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| 175 | IGCM_debug_PopStack "IGCM_sys_RshArchive" |
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| 176 | } |
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| 177 | |
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| 178 | #D-#================================================== |
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[2] | 179 | #D-function IGCM_sys_RshPost |
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[37] | 180 | #D-* Purpose: Post-process rsh command |
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[2] | 181 | #D-* Examples: |
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| 182 | #D- |
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| 183 | function IGCM_sys_RshPost { |
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| 184 | IGCM_debug_PushStack "IGCM_sys_RshPost" $@ |
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| 185 | if ( $DEBUG_sys ) ; then |
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| 186 | echo "IGCM_sys_RshPost :" $@ |
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| 187 | fi |
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[257] | 188 | |
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| 189 | # ============ CESIUM START ============ # |
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| 190 | # typeset NB_ESSAI DELAI status |
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| 191 | # #nombre d'essai avant abandon |
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| 192 | # NB_ESSAI=5 |
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| 193 | # #temps entre chaque essai |
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| 194 | # DELAI=10 |
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| 195 | # i=0 |
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| 196 | # while [ $i -ne $NB_ESSAI ] ; do |
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| 197 | # ssh -t mercure ssh cesium /bin/ksh ${@} 2>/dev/null |
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| 198 | # status=$? |
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| 199 | # if [ ${status} -ne 0 ]; |
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| 200 | # then |
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| 201 | # sleep $DELAI |
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| 202 | # else |
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| 203 | # break |
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| 204 | # fi |
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| 205 | # let i=$i+1 |
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| 206 | # done |
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| 207 | # ============ CESIUM END ============ # |
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| 208 | |
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| 209 | |
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[2] | 210 | /bin/ksh ${@} |
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| 211 | if [ $? -gt 0 ] ; then |
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| 212 | echo "IGCM_sys_RshPost : erreur." |
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| 213 | IGCM_debug_Exit "IGCM_sys_RshPost" |
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| 214 | fi |
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| 215 | IGCM_debug_PopStack "IGCM_sys_RshPost" |
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| 216 | } |
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| 217 | |
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| 218 | #D-#================================================== |
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[153] | 219 | #D-function IGCM_sys_SendMail |
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| 220 | #D-* Purpose: Send mail when simulation is over |
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| 221 | #D-* Examples: |
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| 222 | #D- |
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| 223 | function IGCM_sys_SendMail { |
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| 224 | IGCM_debug_PushStack "IGCM_sys_SendMailPost" $@ |
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| 225 | if ( $DEBUG_sys ) ; then |
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| 226 | echo "IGCM_sys_SendMail :" $@ |
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| 227 | fi |
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| 228 | |
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| 229 | ssh mercure /bin/ksh <<-EOF |
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| 230 | export LOGIN=${LOGIN} |
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| 231 | export config_UserChoices_JobName=${config_UserChoices_JobName} |
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| 232 | export config_UserChoices_MailName=${config_UserChoices_MailName} |
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| 233 | export DateBegin=${DateBegin} |
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| 234 | export DateEnd=${DateEnd} |
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| 235 | export R_SAVE=${R_SAVE} |
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[288] | 236 | export SUBMIT_DIR=${SUBMIT_DIR} |
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[153] | 237 | |
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| 238 | cat << END_MAIL > job_end.mail |
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| 239 | Dear ${LOGIN}, |
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| 240 | |
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| 241 | Simulation ${config_UserChoices_JobName} is finished on supercomputer `hostname`. |
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| 242 | Job started : ${DateBegin} |
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| 243 | Job ended : ${DateEnd} |
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| 244 | Ouput files are available in ${R_SAVE} |
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[288] | 245 | Script files and Script Outputs are available in ${SUBMIT_DIR} |
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[153] | 246 | END_MAIL |
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| 247 | |
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| 248 | if [ ! -z ${config_UserChoices_MailName} ] ; then |
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[160] | 249 | mailx -s "${config_UserChoices_JobName} completed" ${config_UserChoices_MailName} < job_end.mail |
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[153] | 250 | elif [ -f ~/.forward ] ; then |
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[160] | 251 | mailx -s "${config_UserChoices_JobName} completed" $( cat ~/.forward ) < job_end.mail |
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[153] | 252 | fi |
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| 253 | |
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| 254 | sleep 10 |
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| 255 | rm -f job_end.mail |
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| 256 | EOF |
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| 257 | |
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| 258 | if [ $? -gt 0 ] ; then |
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| 259 | echo "IGCM_sys_SendMail : erreur." |
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| 260 | IGCM_debug_Exit "IGCM_sys_SendMail" |
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| 261 | fi |
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| 262 | IGCM_debug_PopStack "IGCM_sys_SendMail" |
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| 263 | } |
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| 264 | |
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| 265 | #D-#================================================== |
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[2] | 266 | #D-function IGCM_sys_Mkdir |
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| 267 | #D-* Purpose: Master locale mkdir command |
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| 268 | #D-* Examples: |
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| 269 | #D- |
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| 270 | function IGCM_sys_Mkdir { |
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| 271 | IGCM_debug_PushStack "IGCM_sys_Mkdir" $@ |
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| 272 | if ( $DEBUG_sys ) ; then |
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| 273 | echo "IGCM_sys_Mkdir :" $@ |
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| 274 | fi |
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| 275 | if [ ! -d ${1} ]; then |
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| 276 | \mkdir -p $1 |
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| 277 | if [ $? -gt 0 ] ; then |
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| 278 | echo "IGCM_sys_Mkdir : erreur." |
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| 279 | IGCM_debug_Exit "IGCM_sys_Mkdir" |
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| 280 | fi |
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| 281 | fi |
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| 282 | # vérification : |
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| 283 | if [ ! -d ${1} ] ; then |
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| 284 | echo "IGCM_sys_Mkdir : erreur." |
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| 285 | IGCM_debug_Exit "IGCM_sys_Mkdir" |
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| 286 | fi |
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| 287 | IGCM_debug_PopStack "IGCM_sys_Mkdir" |
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| 288 | } |
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| 289 | |
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| 290 | #D-#================================================== |
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| 291 | #D-function IGCM_sys_MkdirArchive |
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| 292 | #D-* Purpose: Mkdir on Archive |
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| 293 | #D-* Examples: |
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| 294 | #D- |
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| 295 | function IGCM_sys_MkdirArchive { |
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| 296 | IGCM_debug_PushStack "IGCM_sys_MkdirArchive" $@ |
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| 297 | if ( $DEBUG_sys ) ; then |
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| 298 | echo "IGCM_sys_MkdirArchive :" $@ |
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| 299 | fi |
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| 300 | #- creation de repertoire sur le serveur fichier |
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| 301 | if [ ! -d ${1} ]; then |
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| 302 | \mkdir -p $1 |
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| 303 | if [ $? -gt 0 ] ; then |
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| 304 | echo "IGCM_sys_MkdirArchive : erreur." |
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| 305 | IGCM_debug_Exit "IGCM_sys_MkdirArchive" |
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| 306 | fi |
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| 307 | fi |
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| 308 | IGCM_debug_PopStack "IGCM_sys_MkdirArchive" |
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| 309 | } |
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| 310 | |
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| 311 | #D-#================================================== |
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| 312 | #D-function IGCM_sys_MkdirWork |
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| 313 | #D-* Purpose: Mkdir on Work |
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| 314 | #D-* Examples: |
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| 315 | #D- |
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| 316 | function IGCM_sys_MkdirWork { |
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| 317 | IGCM_debug_PushStack "IGCM_sys_MkdirWork" $@ |
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| 318 | if ( $DEBUG_sys ) ; then |
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| 319 | echo "IGCM_sys_MkdirWork :" $@ |
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| 320 | fi |
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| 321 | #- creation de repertoire sur le serveur fichier |
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| 322 | if [ ! -d ${1} ]; then |
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| 323 | \mkdir -p $1 |
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| 324 | if [ $? -gt 0 ] ; then |
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| 325 | echo "IGCM_sys_MkdirWork : erreur." |
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| 326 | IGCM_debug_Exit "IGCM_sys_MkdirWork" |
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| 327 | fi |
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| 328 | fi |
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| 329 | IGCM_debug_PopStack "IGCM_sys_MkdirWork" |
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| 330 | } |
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| 331 | |
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| 332 | #D-#================================================== |
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| 333 | #D-function IGCM_sys_Cd |
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| 334 | #D-* Purpose: master cd command |
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| 335 | #D-* Examples: |
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| 336 | #D- |
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| 337 | function IGCM_sys_Cd { |
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| 338 | IGCM_debug_PushStack "IGCM_sys_Cd" $@ |
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| 339 | if ( $DEBUG_sys ) ; then |
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| 340 | echo "IGCM_sys_Cd :" $@ |
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| 341 | fi |
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| 342 | \cd $1 |
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| 343 | if [ $? -gt 0 ] ; then |
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| 344 | echo "IGCM_sys_Cd : erreur." |
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| 345 | IGCM_debug_Exit "IGCM_sys_Cd" |
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| 346 | fi |
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| 347 | IGCM_debug_PopStack "IGCM_sys_Cd" |
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| 348 | } |
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| 349 | |
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| 350 | #D-#================================================== |
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| 351 | #D-function IGCM_sys_Chmod |
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| 352 | #D-* Purpose: Chmod |
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| 353 | #D-* Examples: |
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| 354 | #D- |
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| 355 | function IGCM_sys_Chmod { |
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| 356 | IGCM_debug_PushStack "IGCM_sys_Chmod" -- $@ |
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| 357 | if ( $DEBUG_sys ) ; then |
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| 358 | echo "IGCM_sys_Chmod :" $@ |
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| 359 | fi |
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| 360 | if [ $DRYRUN -le 1 ]; then |
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| 361 | \chmod $@ |
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| 362 | if [ $? -gt 0 ] ; then |
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| 363 | echo "IGCM_sys_Chmod : erreur." |
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| 364 | IGCM_debug_Exit "IGCM_sys_Chmod" |
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| 365 | fi |
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| 366 | else |
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[36] | 367 | ( ${DEBUG_debug} ) && echo "DRYRUN mode = " $DRYRUN >> stack |
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[2] | 368 | fi |
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| 369 | IGCM_debug_PopStack "IGCM_sys_Chmod" |
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| 370 | } |
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| 371 | |
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| 372 | #D-#================================================== |
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| 373 | #D-function IGCM_sys_FileSize |
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| 374 | #D-* Purpose: Filesize |
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| 375 | #D-* Examples: |
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| 376 | #D- |
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| 377 | function IGCM_sys_FileSize { |
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| 378 | IGCM_debug_PushStack "IGCM_sys_FileSize" $@ |
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| 379 | |
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| 380 | typeset sizeF |
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| 381 | set +A sizeF -- $( ls -la ${1} ) |
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| 382 | if [ $? -gt 0 ] ; then |
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| 383 | IGCM_debug_Exit "IGCM_sys_FileSize" |
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| 384 | fi |
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| 385 | eval ${2}=${sizeF[4]} |
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| 386 | |
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| 387 | IGCM_debug_PopStack "IGCM_sys_FileSize" |
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| 388 | } |
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| 389 | |
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| 390 | #D-#================================================== |
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| 391 | #D-function IGCM_sys_TestDir |
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| 392 | #D-* Purpose: Test Directory that must exists |
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| 393 | #D-* Examples: |
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| 394 | #D- |
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| 395 | function IGCM_sys_TestDir { |
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| 396 | IGCM_debug_PushStack "IGCM_sys_TestDir" $@ |
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| 397 | if ( $DEBUG_sys ) ; then |
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| 398 | echo "IGCM_sys_TestDir :" $@ |
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| 399 | fi |
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[67] | 400 | typeset ExistFlag |
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| 401 | ExistFlag=$( [ -d $1 ] && echo 0 || echo 1 ) |
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[2] | 402 | IGCM_debug_PopStack "IGCM_sys_TestDir" |
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[67] | 403 | |
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| 404 | return ${ExistFlag} |
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[2] | 405 | } |
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| 406 | |
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| 407 | #D-#================================================== |
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| 408 | #D-function IGCM_sys_TestDirArchive |
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| 409 | #D-* Purpose: Test Directory that must exists on Archive |
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| 410 | #D-* Examples: |
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| 411 | #D- |
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| 412 | function IGCM_sys_TestDirArchive { |
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| 413 | IGCM_debug_PushStack "IGCM_sys_TestDirArchive" $@ |
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| 414 | if ( $DEBUG_sys ) ; then |
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| 415 | echo "IGCM_sys_TestDirArchive :" $@ |
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| 416 | fi |
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[67] | 417 | typeset ExistFlag |
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| 418 | ExistFlag=$( [ -d $1 ] && echo 0 || echo 1 ) |
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[2] | 419 | IGCM_debug_PopStack "IGCM_sys_TestDirArchive" |
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[67] | 420 | |
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| 421 | return ${ExistFlag} |
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[2] | 422 | } |
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| 423 | |
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| 424 | #D-#================================================== |
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| 425 | #D-function IGCM_sys_TestFileArchive |
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| 426 | #D-* Purpose: Test file that must NOT EXISTS on Archive |
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| 427 | #D-* Examples: |
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| 428 | #D- |
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| 429 | function IGCM_sys_TestFileArchive { |
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| 430 | IGCM_debug_PushStack "IGCM_sys_TestFileArchive" $@ |
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[67] | 431 | typeset ExistFlag |
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| 432 | ExistFlag=$( [ -f $1 ] && echo 0 || echo 1 ) |
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| 433 | IGCM_debug_PopStack "IGCM_sys_TestFileArchive" |
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| 434 | |
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| 435 | return ${ExistFlag} |
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| 436 | } |
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| 437 | |
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| 438 | #D-#================================================== |
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| 439 | #D-function IGCM_sys_CountFileArchive |
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| 440 | #D-* Purpose: Count files on Archive filesystem |
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| 441 | #D-* Examples: |
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| 442 | #D- |
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| 443 | function IGCM_sys_CountFileArchive { |
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| 444 | IGCM_debug_PushStack "IGCM_sys_CountFileArchive" $@ |
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| 445 | ls ${@} 2>/dev/null | wc -l |
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| 446 | if [ $? -gt 0 ] ; then |
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| 447 | echo "IGCM_sys_CountFileArchive : erreur." |
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[2] | 448 | fi |
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[67] | 449 | IGCM_debug_PopStack "IGCM_sys_CountFileArchive" |
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[2] | 450 | } |
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| 451 | |
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| 452 | #D-#================================================== |
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| 453 | #D-function IGCM_sys_Tree |
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| 454 | #D-* Purpose: Tree directories with files on ${ARCHIVE} |
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| 455 | #D-* Examples: IGCM_sys_Tree ${R_IN} ${R_OUT} |
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| 456 | #D- |
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| 457 | function IGCM_sys_Tree { |
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| 458 | IGCM_debug_PushStack "IGCM_sys_Tree" $@ |
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| 459 | if ( $DEBUG_sys ) ; then |
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| 460 | echo "IGCM_sys_Tree :" $@ |
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| 461 | fi |
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| 462 | |
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| 463 | \ls -lR ${@} |
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| 464 | |
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| 465 | IGCM_debug_PopStack "IGCM_sys_Tree" |
---|
| 466 | } |
---|
| 467 | |
---|
| 468 | #D-#================================================== |
---|
| 469 | #D-function IGCM_sys_Tar |
---|
| 470 | #D-* Purpose: master un-tar command |
---|
| 471 | #D-* Examples: |
---|
| 472 | #D- |
---|
| 473 | function IGCM_sys_Tar { |
---|
| 474 | IGCM_debug_PushStack "IGCM_sys_Tar" $@ |
---|
| 475 | if ( $DEBUG_sys ) ; then |
---|
| 476 | echo "IGCM_sys_Tar :" $@ |
---|
| 477 | fi |
---|
| 478 | \tar xvf $1 |
---|
| 479 | if [ $? -gt 0 ] ; then |
---|
| 480 | echo "IGCM_sys_Tar : erreur." |
---|
| 481 | IGCM_debug_Exit "IGCM_sys_Tar" |
---|
| 482 | fi |
---|
| 483 | IGCM_debug_PopStack "IGCM_sys_Tar" |
---|
| 484 | } |
---|
| 485 | |
---|
| 486 | #D-#================================================== |
---|
| 487 | #D-function IGCM_sys_UnTar |
---|
| 488 | #D-* Purpose: master un-tar command |
---|
| 489 | #D-* Examples: |
---|
| 490 | #D- |
---|
| 491 | function IGCM_sys_UnTar { |
---|
| 492 | IGCM_debug_PushStack "IGCM_sys_UnTar" $@ |
---|
| 493 | if ( $DEBUG_sys ) ; then |
---|
| 494 | echo "IGCM_sys_UnTar :" $@ |
---|
| 495 | fi |
---|
| 496 | \tar xvf $1 |
---|
| 497 | if [ $? -gt 0 ] ; then |
---|
| 498 | echo "IGCM_sys_UnTar : erreur." |
---|
| 499 | IGCM_debug_Exit "IGCM_sys_UnTar" |
---|
| 500 | fi |
---|
| 501 | IGCM_debug_PopStack "IGCM_sys_UnTar" |
---|
| 502 | } |
---|
| 503 | |
---|
| 504 | #D-#================================================== |
---|
| 505 | #D-function IGCM_sys_Qsub |
---|
| 506 | #D-* Purpose: Qsub new job |
---|
| 507 | #D-* Examples: |
---|
| 508 | #D- |
---|
| 509 | function IGCM_sys_Qsub { |
---|
| 510 | IGCM_debug_PushStack "IGCM_sys_Qsub" $@ |
---|
| 511 | if ( $DEBUG_sys ) ; then |
---|
| 512 | echo "IGCM_sys_Qsub :" $@ |
---|
| 513 | fi |
---|
| 514 | /usr/bin/nqsII/qsub -o ${Script_Output} -N ${config_UserChoices_JobName}.${CumulPeriod} < $1 |
---|
| 515 | if [ $? -gt 0 ] ; then |
---|
| 516 | echo "IGCM_sys_Qsub : erreur -o ${Script_Output} -N ${config_UserChoices_JobName}.${CumulPeriod} $@." |
---|
| 517 | IGCM_debug_Exit "IGCM_sys_Qsub" |
---|
| 518 | fi |
---|
| 519 | IGCM_debug_PopStack "IGCM_sys_Qsub" |
---|
| 520 | } |
---|
| 521 | |
---|
| 522 | #D-#================================================== |
---|
| 523 | #D-function IGCM_sys_QsubPost |
---|
| 524 | #D-* Purpose: Qsub new job on scalaire |
---|
| 525 | #D-* Examples: |
---|
| 526 | #D- |
---|
| 527 | function IGCM_sys_QsubPost { |
---|
| 528 | IGCM_debug_PushStack "IGCM_sys_QsubPost" $@ |
---|
| 529 | if ( $DEBUG_sys ) ; then |
---|
| 530 | echo "IGCM_sys_QsubPost :" $@ |
---|
| 531 | fi |
---|
[257] | 532 | # ============ CESIUM START ============ # |
---|
[387] | 533 | #/usr/local/bin/ccc_msub -o ${POST_DIR}/${Script_Post_Output}.out -e ${POST_DIR}/${Script_Post_Output}.e.out -E "-v ${listVarEnv}" ${libIGCM_POST}/$1.job |
---|
[257] | 534 | # ============ CESIUM END ============ # |
---|
[387] | 535 | /usr/bin/nqsII/qsub -o ${POST_DIR}/${Script_Post_Output}.out ${libIGCM}/$1.job -v ${listVarEnv} |
---|
[2] | 536 | if [ $? -gt 0 ] ; then |
---|
| 537 | echo "IGCM_sys_QsubPost : erreur " $@ |
---|
| 538 | IGCM_debug_Exit "IGCM_sys_QsubPost" |
---|
| 539 | fi |
---|
| 540 | IGCM_debug_PopStack "IGCM_sys_QsubPost" |
---|
| 541 | } |
---|
| 542 | |
---|
| 543 | #D-************************* |
---|
| 544 | #D- File transfer functions |
---|
| 545 | #D-************************* |
---|
| 546 | #D- |
---|
| 547 | |
---|
| 548 | #D-#================================================== |
---|
| 549 | #D-function IGCM_sys_Rsync_out |
---|
| 550 | #D-* Purpose: treat return val of rsync |
---|
| 551 | #D-* Examples: IGCM_sys_Rsync_out out_RET_rsync |
---|
| 552 | #D- Error values and explanations can depend on your system version. |
---|
| 553 | function IGCM_sys_Rsync_out { |
---|
| 554 | RET=$1 |
---|
| 555 | if [ ! $RET ] ; then |
---|
| 556 | echo "rsync error !" |
---|
| 557 | fi |
---|
| 558 | |
---|
| 559 | if [ $MYLANG = "fr" ]; then |
---|
| 560 | case $RET in |
---|
| 561 | 0) return ;; |
---|
| 562 | 1) echo "Erreur de rsync ; RERR_SYNTAX : " |
---|
| 563 | echo "Erreur de syntaxe ou d'utilisation." |
---|
| 564 | return;; |
---|
| 565 | 2) echo "Erreur de rsync ; RERR_PROTOCOL : " |
---|
| 566 | echo "Incompatibilité de protocole." |
---|
| 567 | return;; |
---|
| 568 | 3) echo "Erreur de rsync ; RERR_FILESELECT 3" |
---|
| 569 | echo "Erreurs lors de la sélection des fichiers d'entrée sortie et" |
---|
| 570 | echo "répertoires" |
---|
| 571 | return;; |
---|
| 572 | 4) echo "Erreur de rsync ; RERR_UNSUPPORTED" |
---|
| 573 | echo "Action demandée non supportée : une tentative de manipulation de" |
---|
| 574 | echo "fichiers 64-bits sur une plate-forme qui ne les supporte pas a" |
---|
| 575 | echo "été faite ; ou une option qui est supportée par le client mais" |
---|
| 576 | echo "pas par le serveur a été spécifiée." |
---|
| 577 | return;; |
---|
| 578 | 10) echo "Erreur de rsync ; RERR_SOCKETIO" |
---|
| 579 | echo "Erreur dans le socket d'entrée sortie" |
---|
| 580 | return;; |
---|
| 581 | 11) echo "Erreur de rsync ; RERR_FILEIO" |
---|
| 582 | echo "Erreur d'entrée sortie fichier" |
---|
| 583 | return;; |
---|
| 584 | 12) echo "Erreur de rsync ; RERR_STREAMIO" |
---|
| 585 | echo "Erreur dans flux de donnée du protocole rsync" |
---|
| 586 | return;; |
---|
| 587 | 13) echo "Erreur de rsync ; RERR_MESSAGEIO" |
---|
| 588 | echo "Erreur avec les diagnostics du programme" |
---|
| 589 | return;; |
---|
| 590 | 14) echo "Erreur de rsync ; RERR_IPC" |
---|
| 591 | echo "Erreur dans le code IPC" |
---|
| 592 | return;; |
---|
| 593 | 20) echo "Erreur de rsync ; RERR_SIGNAL" |
---|
| 594 | echo "SIGUSR1 ou SIGINT reçu" |
---|
| 595 | return;; |
---|
| 596 | 21) echo "Erreur de rsync ; RERR_WAITCHILD" |
---|
| 597 | echo "Une erreur retournée par waitpid()" |
---|
| 598 | return;; |
---|
| 599 | 22) echo "Erreur de rsync ; RERR_MALLOC" |
---|
| 600 | echo "Erreur lors de l'allocation des tampons de mémoire de coeur" |
---|
| 601 | return;; |
---|
| 602 | 23) echo "" |
---|
| 603 | echo "Erreur fichier inexistant" |
---|
| 604 | return;; |
---|
| 605 | 30) echo "Erreur de rsync ; RERR_TIMEOUT" |
---|
| 606 | echo "Temps d'attente écoulé dans l'envoi/réception de données" |
---|
| 607 | return;; |
---|
| 608 | *) echo "Erreur de rsync : code de retour de rsync inconnu :" $RET |
---|
| 609 | return;; |
---|
| 610 | esac |
---|
| 611 | elif [ $MYLANG = "en" ] ; then |
---|
| 612 | case $RET in |
---|
| 613 | 0) return;; |
---|
| 614 | 1) echo "rsync error : Syntax or usage error " |
---|
| 615 | return;; |
---|
| 616 | 2) echo "rsync error : Protocol incompatibility " |
---|
| 617 | return;; |
---|
| 618 | 3) echo "rsync error : Errors selecting input/output files, dirs" |
---|
| 619 | return;; |
---|
| 620 | 4) echo "rsync error : Requested action not supported: an attempt" |
---|
| 621 | echo "was made to manipulate 64-bit files on a platform that cannot support" |
---|
| 622 | echo "them; or an option was specified that is supported by the client and" |
---|
| 623 | echo "not by the server." |
---|
| 624 | return;; |
---|
| 625 | 5) echo "rsync error : Error starting client-server protocol" |
---|
| 626 | return;; |
---|
| 627 | 10) echo "rsync error : Error in socket I/O " |
---|
| 628 | return;; |
---|
| 629 | 11) echo "rsync error : Error in file I/O " |
---|
| 630 | return;; |
---|
| 631 | 12) echo "rsync error : Error in rsync protocol data stream " |
---|
| 632 | return;; |
---|
| 633 | 13) echo "rsync error : Errors with program diagnostics " |
---|
| 634 | return;; |
---|
| 635 | 14) echo "rsync error : Error in IPC code " |
---|
| 636 | return;; |
---|
| 637 | 20) echo "rsync error : Received SIGUSR1 or SIGINT " |
---|
| 638 | return;; |
---|
| 639 | 21) echo "rsync error : Some error returned by waitpid() " |
---|
| 640 | return;; |
---|
| 641 | 22) echo "rsync error : Error allocating core memory buffers " |
---|
| 642 | return;; |
---|
| 643 | 23) echo "rsync error : Partial transfer due to error" |
---|
| 644 | return;; |
---|
| 645 | 24) echo "rsync error : Partial transfer due to vanished source files" |
---|
| 646 | return;; |
---|
| 647 | 30) echo "rsync error : Timeout in data send/receive " |
---|
| 648 | return;; |
---|
| 649 | *) echo "rsync error : return code of rsync unknown :" $RET |
---|
| 650 | return;; |
---|
| 651 | esac |
---|
| 652 | else |
---|
| 653 | echo "unknown language $MYLANG." |
---|
| 654 | return |
---|
| 655 | fi |
---|
| 656 | } |
---|
| 657 | |
---|
[257] | 658 | |
---|
[2] | 659 | #D-#================================================== |
---|
[257] | 660 | #D-function IGCM_sys_Miror_libIGCM |
---|
| 661 | #D-* Purpose: Mirror libIGCM PATH and lib to cesium |
---|
| 662 | #D-* Examples: |
---|
| 663 | #D- |
---|
| 664 | function IGCM_sys_Mirror_libIGCM { |
---|
| 665 | IGCM_debug_PushStack "IGCM_sys_Mirror_libIGCM" |
---|
| 666 | if ( $DEBUG_sys ) ; then |
---|
| 667 | echo "IGCM_sys_Mirror_libIGCM" |
---|
| 668 | fi |
---|
| 669 | |
---|
| 670 | typeset RET DEST |
---|
| 671 | |
---|
| 672 | mkdir -p ${HOME}/MIRROR/${PATHlibIGCM} |
---|
| 673 | |
---|
| 674 | echo ${RSYNC} ${RSYNC_opt} ${libIGCM} ${HOME}/MIRROR/${PATHlibIGCM} > out_rsync 2>&1 |
---|
| 675 | ${RSYNC} ${RSYNC_opt} ${libIGCM} ${HOME}/MIRROR/${PATHlibIGCM} >> out_rsync 2>&1 |
---|
| 676 | RET=$? |
---|
| 677 | |
---|
| 678 | if [ ${RET} -gt 0 ] ; then |
---|
| 679 | echo "IGCM_sys_Mirror_libIGCM Warning : no libIGCM on cesium." |
---|
| 680 | cat out_rsync |
---|
| 681 | fi |
---|
| 682 | IGCM_debug_PopStack "IGCM_sys_Mirror_libIGCM" |
---|
| 683 | } |
---|
| 684 | |
---|
| 685 | #==================================================== |
---|
| 686 | #- Call IGCM_sys_Mirror_libIGCM now ! |
---|
| 687 | if ( $MirrorlibIGCM ) ; then |
---|
| 688 | IGCM_sys_Mirror_libIGCM |
---|
| 689 | fi |
---|
| 690 | |
---|
| 691 | #D-#================================================== |
---|
[2] | 692 | #D-function IGCM_sys_Cp |
---|
| 693 | #D-* Purpose: generic cp |
---|
| 694 | #D-* Examples: |
---|
| 695 | #D- |
---|
| 696 | function IGCM_sys_Cp { |
---|
| 697 | IGCM_debug_PushStack "IGCM_sys_Cp" $@ |
---|
| 698 | if ( $DEBUG_sys ) ; then |
---|
| 699 | echo "IGCM_sys_Cp :" $@ |
---|
| 700 | fi |
---|
| 701 | |
---|
| 702 | typeset RET |
---|
| 703 | |
---|
| 704 | echo cp $@ > out_rsync 2>&1 |
---|
| 705 | \cp $@ >> out_rsync 2>&1 |
---|
| 706 | RET=$? |
---|
| 707 | |
---|
| 708 | if [ ${RET} -gt 0 ] ; then |
---|
| 709 | echo "IGCM_sys_Cp : error." |
---|
| 710 | cat out_rsync |
---|
| 711 | IGCM_debug_Exit "IGCM_sys_Cp" |
---|
[343] | 712 | else |
---|
[404] | 713 | \rm out_rsync |
---|
[2] | 714 | fi |
---|
| 715 | IGCM_debug_PopStack "IGCM_sys_Cp" |
---|
| 716 | } |
---|
| 717 | |
---|
| 718 | #D-#================================================== |
---|
[92] | 719 | #D-function IGCM_sys_Rm |
---|
| 720 | #D-* Purpose: generic rm |
---|
| 721 | #D-* Examples: |
---|
| 722 | #D- |
---|
| 723 | function IGCM_sys_Rm { |
---|
| 724 | IGCM_debug_PushStack "IGCM_sys_Rm" -- $@ |
---|
| 725 | if ( $DEBUG_sys ) ; then |
---|
[257] | 726 | echo "IGCM_sys_Rm :" $@ |
---|
[92] | 727 | fi |
---|
| 728 | |
---|
| 729 | typeset RET |
---|
| 730 | |
---|
| 731 | echo rm $@ > out_rsync 2>&1 |
---|
| 732 | \rm $@ >> out_rsync 2>&1 |
---|
| 733 | RET=$? |
---|
| 734 | |
---|
| 735 | if [ ${RET} -gt 0 ] ; then |
---|
[257] | 736 | echo "IGCM_sys_Rm : error." |
---|
| 737 | cat out_rsync |
---|
| 738 | IGCM_debug_Exit "IGCM_sys_Rm" |
---|
[343] | 739 | else |
---|
[404] | 740 | \rm out_rsync |
---|
[92] | 741 | fi |
---|
| 742 | IGCM_debug_PopStack "IGCM_sys_Rm" |
---|
| 743 | } |
---|
| 744 | |
---|
| 745 | #D-#================================================== |
---|
[2] | 746 | #D-function IGCM_sys_Mv |
---|
| 747 | #D-* Purpose: generic move |
---|
| 748 | #D-* Examples: |
---|
| 749 | #D- |
---|
| 750 | function IGCM_sys_Mv { |
---|
| 751 | IGCM_debug_PushStack "IGCM_sys_Mv" $@ |
---|
| 752 | if ( $DEBUG_sys ) ; then |
---|
| 753 | echo "IGCM_sys_Mv :" $@ |
---|
| 754 | fi |
---|
| 755 | |
---|
[173] | 756 | if [ $DRYRUN = 0 ]; then |
---|
[2] | 757 | |
---|
[173] | 758 | typeset RET |
---|
| 759 | |
---|
| 760 | echo mv $@ > out_rsync 2>&1 |
---|
| 761 | \mv $@ >> out_rsync 2>&1 |
---|
| 762 | RET=$? |
---|
| 763 | |
---|
| 764 | if [ ${RET} -gt 0 ] ; then |
---|
| 765 | echo "IGCM_sys_Mv : error in mv." |
---|
| 766 | cat out_rsync |
---|
| 767 | IGCM_debug_Exit "IGCM_sys_Mv" |
---|
[343] | 768 | else |
---|
[404] | 769 | \rm out_rsync |
---|
[173] | 770 | fi |
---|
| 771 | else |
---|
| 772 | ( ${DEBUG_debug} ) && echo "DRYRUN mode = " $DRYRUN >> stack |
---|
[2] | 773 | fi |
---|
| 774 | |
---|
| 775 | IGCM_debug_PopStack "IGCM_sys_Mv" |
---|
| 776 | } |
---|
| 777 | |
---|
| 778 | #D-#================================================== |
---|
[34] | 779 | #D-function IGCM_sys_Put_Dir |
---|
| 780 | #D-* Purpose: Copy a complete directory on $(ARCHIVE) |
---|
| 781 | #D-* Examples: |
---|
| 782 | #D- |
---|
| 783 | function IGCM_sys_Put_Dir { |
---|
| 784 | IGCM_debug_PushStack "IGCM_sys_Put_Dir" $@ |
---|
| 785 | if ( $DEBUG_sys ) ; then |
---|
| 786 | echo "IGCM_sys_Put_Dir :" $@ |
---|
| 787 | fi |
---|
| 788 | if [ $DRYRUN = 0 ]; then |
---|
| 789 | if [ ! -d ${1} ] ; then |
---|
| 790 | echo "WARNING : IGCM_sys_Put_Dir ${1} DOES NOT EXIST ." |
---|
| 791 | IGCM_debug_PopStack "IGCM_sys_Put_Dir" |
---|
| 792 | return |
---|
| 793 | fi |
---|
| 794 | |
---|
| 795 | typeset RET |
---|
| 796 | |
---|
| 797 | # Only if we use rsync |
---|
| 798 | #IGCM_sys_TestDirArchive $( dirname $2 ) |
---|
| 799 | # |
---|
| 800 | #USUAL WAY |
---|
| 801 | \cp -r $1 $2 > out_rsync 2>&1 |
---|
| 802 | RET=$? |
---|
| 803 | |
---|
| 804 | if [ ${RET} -gt 0 ] ; then |
---|
| 805 | echo "IGCM_sys_Put_Dir : error." |
---|
| 806 | cat out_rsync |
---|
| 807 | IGCM_debug_Exit "IGCM_sys_Put_Dir" |
---|
[343] | 808 | else |
---|
[404] | 809 | \rm out_rsync |
---|
[34] | 810 | fi |
---|
| 811 | else |
---|
[36] | 812 | ( ${DEBUG_debug} ) && echo "DRYRUN mode = " $DRYRUN >> stack |
---|
[34] | 813 | fi |
---|
| 814 | IGCM_debug_PopStack "IGCM_sys_Put_Dir" |
---|
| 815 | } |
---|
| 816 | |
---|
| 817 | #D-#================================================== |
---|
| 818 | #D-function IGCM_sys_Get_Dir |
---|
| 819 | #D-* Purpose: Copy a complete directory from $(ARCHIVE) |
---|
| 820 | #D-* Examples: |
---|
| 821 | #D- |
---|
| 822 | function IGCM_sys_Get_Dir { |
---|
| 823 | IGCM_debug_PushStack "IGCM_sys_Get_Dir" $@ |
---|
| 824 | if ( $DEBUG_sys ) ; then |
---|
| 825 | echo "IGCM_sys_Get_Dir :" $@ |
---|
| 826 | fi |
---|
| 827 | if [ $DRYRUN = 0 ]; then |
---|
| 828 | if [ ! -d ${1} ] ; then |
---|
| 829 | echo "WARNING : IGCM_sys_Get_Dir ${1} DOES NOT EXIST ." |
---|
| 830 | IGCM_debug_PopStack "IGCM_sys_Get_Dir" |
---|
| 831 | return |
---|
| 832 | fi |
---|
| 833 | |
---|
| 834 | typeset RET |
---|
| 835 | |
---|
| 836 | # Only if we use rsync |
---|
| 837 | #IGCM_sys_TestDirArchive $( dirname $2 ) |
---|
| 838 | # |
---|
| 839 | #USUAL WAY |
---|
| 840 | \cp -r $1 $2 > out_rsync 2>&1 |
---|
| 841 | RET=$? |
---|
| 842 | |
---|
| 843 | if [ ${RET} -gt 0 ] ; then |
---|
| 844 | echo "IGCM_sys_Get_Dir : error." |
---|
| 845 | cat out_rsync |
---|
| 846 | IGCM_debug_Exit "IGCM_sys_Get_Dir" |
---|
[343] | 847 | else |
---|
[404] | 848 | \rm out_rsync |
---|
[34] | 849 | fi |
---|
| 850 | else |
---|
[36] | 851 | ( ${DEBUG_debug} ) && echo "DRYRUN mode = " $DRYRUN >> stack |
---|
[34] | 852 | fi |
---|
| 853 | IGCM_debug_PopStack "IGCM_sys_Get_Dir" |
---|
| 854 | } |
---|
| 855 | |
---|
| 856 | #D-#================================================== |
---|
[2] | 857 | #D-function IGCM_sys_Put_Rest |
---|
| 858 | #D-* Purpose: Put computied restarts on $(ARCHIVE). |
---|
| 859 | #D- File and target directory must exist. |
---|
| 860 | #D-* Examples: |
---|
| 861 | #D- |
---|
| 862 | function IGCM_sys_Put_Rest { |
---|
| 863 | IGCM_debug_PushStack "IGCM_sys_Put_Rest" $@ |
---|
| 864 | if ( $DEBUG_sys ) ; then |
---|
| 865 | echo "IGCM_sys_Put_Rest :" $@ |
---|
| 866 | fi |
---|
| 867 | if [ $DRYRUN = 0 ]; then |
---|
| 868 | if [ ! -f ${1} ] ; then |
---|
| 869 | echo "ERROR : IGCM_sys_Put_Rest ${1} DOES NOT EXIST ." |
---|
| 870 | IGCM_debug_Exit "IGCM_sys_Put_Rest" |
---|
| 871 | fi |
---|
| 872 | |
---|
| 873 | typeset RET |
---|
| 874 | # |
---|
[128] | 875 | if [ X${JobType} = XRUN ] ; then |
---|
| 876 | IGCM_sys_Chmod 444 ${1} |
---|
| 877 | fi |
---|
[2] | 878 | # |
---|
| 879 | IGCM_sys_TestDirArchive $( dirname $2 ) |
---|
| 880 | # |
---|
| 881 | # USUAL WAY |
---|
| 882 | putfer $1 $2 > out_rsync 2>&1 |
---|
| 883 | RET=$? |
---|
| 884 | |
---|
[192] | 885 | # #RSYNC WITH NETWORK SSH CALL |
---|
| 886 | # echo ${RSYNC} ${RSYNC_opt} -e ssh ${RUN_DIR}/$1 ${RHOST}:${2} > out_rsync 2>&1 |
---|
| 887 | # ${RSYNC} ${RSYNC_opt} -e ssh ${RUN_DIR}/$1 ${RHOST}:${2} >> out_rsync 2>&1 |
---|
[2] | 888 | |
---|
| 889 | # #RSYNC WITH NFS USE |
---|
[192] | 890 | # echo ${RSYNC} ${RSYNC_opt} ${RUN_DIR}/$1 ${2} > out_rsync 2>&1 |
---|
| 891 | # ${RSYNC} ${RSYNC_opt} ${RUN_DIR}/$1 ${2} >> out_rsync 2>&1 |
---|
[2] | 892 | |
---|
| 893 | # RET=$? |
---|
| 894 | # IGCM_sys_Rsync_out $RET |
---|
| 895 | |
---|
| 896 | # ${libIGCM}/libIGCM_sys/IGCM_analyse_rsync_out.awk out_rsync |
---|
| 897 | # (( RET=RET+$? )) |
---|
| 898 | |
---|
| 899 | if [ ${RET} -gt 0 ] ; then |
---|
| 900 | echo "IGCM_sys_Put_Rest : error." |
---|
| 901 | cat out_rsync |
---|
| 902 | IGCM_debug_Exit "IGCM_sys_Put_Rest" |
---|
[343] | 903 | else |
---|
[404] | 904 | \rm out_rsync |
---|
[2] | 905 | fi |
---|
| 906 | else |
---|
[36] | 907 | ( ${DEBUG_debug} ) && echo "DRYRUN mode = " $DRYRUN >> stack |
---|
[2] | 908 | fi |
---|
| 909 | IGCM_debug_PopStack "IGCM_sys_Put_Rest" |
---|
| 910 | } |
---|
| 911 | |
---|
| 912 | #D-#================================================== |
---|
| 913 | #D-function IGCM_sys_Put_Out |
---|
| 914 | #D-* Purpose: Copy a file on $(ARCHIVE) after have chmod it in readonly |
---|
| 915 | #D-* Examples: |
---|
| 916 | #D- |
---|
| 917 | function IGCM_sys_Put_Out { |
---|
| 918 | IGCM_debug_PushStack "IGCM_sys_Put_Out" $@ |
---|
| 919 | if ( $DEBUG_sys ) ; then |
---|
| 920 | echo "IGCM_sys_Put_Out :" $@ |
---|
| 921 | fi |
---|
| 922 | if [ $DRYRUN = 0 ]; then |
---|
| 923 | if [ ! -f ${1} ] ; then |
---|
| 924 | echo "WARNING : IGCM_sys_Put_Out ${1} DOES NOT EXIST ." |
---|
| 925 | IGCM_debug_PopStack "IGCM_sys_Put_Out" |
---|
| 926 | return 1 |
---|
| 927 | fi |
---|
| 928 | # |
---|
| 929 | IGCM_sys_MkdirArchive $( dirname $2 ) |
---|
| 930 | # |
---|
| 931 | typeset RET |
---|
| 932 | |
---|
| 933 | #===================================================== |
---|
| 934 | # COMMENT OUT DOUBLE COPY ON SCRATCHDIR |
---|
| 935 | #===================================================== |
---|
| 936 | |
---|
| 937 | #echo ${2} | grep "${R_OUT}" > /dev/null 2>&1 |
---|
| 938 | #if [ $? -eq 0 ] ; then |
---|
| 939 | # typeset WORKPATH FILEPATH |
---|
| 940 | # WORKPATH=$( dirname $2 | sed -e "s|${R_OUT}|${R_OUT_SCR}|" ) |
---|
| 941 | # IGCM_sys_MkdirWork ${WORKPATH} |
---|
| 942 | # FILEPATH=${WORKPATH}/$( basename $2 ) |
---|
| 943 | # # |
---|
| 944 | # IGCM_sys_Cp ${1} ${FILEPATH} |
---|
| 945 | #fi |
---|
| 946 | |
---|
[128] | 947 | if [ X${JobType} = XRUN ] ; then |
---|
[228] | 948 | if [ X${3} = X ] ; then |
---|
| 949 | IGCM_sys_Chmod 444 ${1} |
---|
| 950 | fi |
---|
[128] | 951 | fi |
---|
[2] | 952 | # |
---|
| 953 | # USUAL WAY |
---|
| 954 | putfer $1 $2 > out_rsync 2>&1 |
---|
| 955 | RET=$? |
---|
| 956 | |
---|
[192] | 957 | # #RSYNC WITH NETWORK SSH CALL |
---|
| 958 | # echo ${RSYNC} ${RSYNC_opt} -e ssh ${RUN_DIR}/$1 ${RHOST}:${2} > out_rsync 2>&1 |
---|
| 959 | # ${RSYNC} ${RSYNC_opt} -e ssh ${RUN_DIR}/$1 ${RHOST}:${2} >> out_rsync 2>&1 |
---|
[2] | 960 | |
---|
| 961 | # #RSYNC WITH NFS USE |
---|
[192] | 962 | # echo ${RSYNC} ${RSYNC_opt} ${RUN_DIR}/$1 ${2} > out_rsync 2>&1 |
---|
| 963 | # ${RSYNC} ${RSYNC_opt} ${RUN_DIR}/$1 ${2} >> out_rsync 2>&1 |
---|
[2] | 964 | |
---|
| 965 | # RET=$? |
---|
| 966 | # IGCM_sys_Rsync_out $RET |
---|
| 967 | |
---|
| 968 | # ${libIGCM}/libIGCM_sys/IGCM_analyse_rsync_out.awk out_rsync |
---|
| 969 | # (( RET=RET+$? )) |
---|
| 970 | |
---|
| 971 | if [ ${RET} -gt 0 ] ; then |
---|
| 972 | echo "IGCM_sys_Put_Out : error." |
---|
| 973 | cat out_rsync |
---|
| 974 | IGCM_debug_Exit "IGCM_sys_Put_Out" |
---|
[343] | 975 | else |
---|
[404] | 976 | \rm out_rsync |
---|
[2] | 977 | fi |
---|
| 978 | else |
---|
[36] | 979 | ( ${DEBUG_debug} ) && echo "DRYRUN mode = " $DRYRUN >> stack |
---|
[2] | 980 | fi |
---|
| 981 | IGCM_debug_PopStack "IGCM_sys_Put_Out" |
---|
| 982 | return 0 |
---|
| 983 | } |
---|
| 984 | |
---|
| 985 | #D-#================================================== |
---|
| 986 | #D-function IGCM_sys_Get |
---|
| 987 | #D-* Purpose: Get a file from ${ARCHIVE} |
---|
| 988 | #D-* Examples: IGCM_sys_Get myfile /destpath/myfile_with_PREFIX |
---|
| 989 | #D- IGCM_sys_Get /l Array_contain_myfiles /destpath/ |
---|
| 990 | function IGCM_sys_Get { |
---|
| 991 | IGCM_debug_PushStack "IGCM_sys_Get" $@ |
---|
| 992 | |
---|
| 993 | typeset DEST RET dm_liste ifile target file_work |
---|
| 994 | |
---|
| 995 | if ( $DEBUG_sys ) ; then |
---|
| 996 | echo "IGCM_sys_Get :" $@ |
---|
| 997 | fi |
---|
| 998 | if [ $DRYRUN -le 2 ]; then |
---|
| 999 | if [ X${1} = X'/l' ] ; then |
---|
| 1000 | # test if the first file is present in the old computation : |
---|
| 1001 | eval set +A dm_liste \${${2}} |
---|
| 1002 | else |
---|
| 1003 | eval set +A dm_liste ${1} |
---|
| 1004 | fi |
---|
| 1005 | eval DEST=\${${#}} |
---|
| 1006 | |
---|
| 1007 | #===================================================== |
---|
| 1008 | # COMMENT OUT DOUBLE COPY ON SCRATCHDIR |
---|
| 1009 | #===================================================== |
---|
| 1010 | |
---|
| 1011 | # Is it an R_OUT file (not R_IN) ? |
---|
| 1012 | #echo ${dm_liste[0]} | grep "${R_OUT}" > /dev/null 2>&1 |
---|
| 1013 | #if [ $? -eq 0 ] ; then |
---|
| 1014 | # # Yes ? then we try to get it in SCRATCHDIR |
---|
| 1015 | # set +A file_work $( echo ${dm_liste[*]} | sed -e "s|${R_OUT}|${R_OUT_SCR}|" ) |
---|
| 1016 | # if [ -f ${file_work[0]} ] ; then |
---|
| 1017 | # IGCM_sys_Cp ${file_work[*]} ${DEST} |
---|
| 1018 | # IGCM_debug_PopStack "IGCM_sys_Get" |
---|
| 1019 | # return |
---|
| 1020 | # fi |
---|
| 1021 | #fi |
---|
| 1022 | |
---|
| 1023 | # test if the (first) file is present in the old computation : |
---|
| 1024 | IGCM_sys_TestFileArchive ${dm_liste[0]} |
---|
| 1025 | RET=$? |
---|
| 1026 | if [ ${RET} -gt 0 ] ; then |
---|
| 1027 | echo "IGCM_sys_Get, ERROR : regular file ${dm_liste[0]} DOES NOT EXIST ." |
---|
| 1028 | IGCM_debug_Exit "IGCM_sys_Get" |
---|
| 1029 | IGCM_debug_PopStack "IGCM_sys_Get" |
---|
| 1030 | return |
---|
| 1031 | fi |
---|
| 1032 | |
---|
| 1033 | dmget ${dm_liste[*]} > out_rsync 2>&1 |
---|
| 1034 | RET=$? |
---|
| 1035 | if [ ${RET} -gt 0 ] ; then |
---|
| 1036 | echo "IGCM_sys_Get : demigration error." |
---|
| 1037 | cat out_rsync |
---|
| 1038 | IGCM_debug_Exit "IGCM_sys_Get" |
---|
| 1039 | fi |
---|
| 1040 | |
---|
| 1041 | #USUAL WAY |
---|
| 1042 | if [ X${1} = X'/l' ] ; then |
---|
| 1043 | (( RET=0 )) |
---|
| 1044 | for target in ${dm_liste[*]} ; do |
---|
| 1045 | local_file=$( basename ${target} ) |
---|
| 1046 | \cp ${target} ${DEST}/${local_file} >> out_rsync 2>&1 |
---|
| 1047 | (( RET = RET + $? )) |
---|
| 1048 | done |
---|
| 1049 | else |
---|
| 1050 | \cp ${dm_liste} ${DEST} >> out_rsync 2>&1 |
---|
| 1051 | RET=$? |
---|
| 1052 | fi |
---|
| 1053 | |
---|
[192] | 1054 | # #RSYNC WITH NETWORK SSH CALL |
---|
| 1055 | # echo ${RSYNC} ${RSYNC_opt} -e ssh ${RHOST}:"${dm_liste}" ${RHOST}:${RUN_DIR}/${DEST} > out_rsync 2>&1 |
---|
| 1056 | # ${RSYNC} ${RSYNC_opt} -e ssh ${RHOST}:"${dm_liste}" ${RHOST}:${RUN_DIR}/${DEST} >> out_rsync 2>&1 |
---|
[2] | 1057 | |
---|
| 1058 | # #RSYNC WITH NFS USE |
---|
[192] | 1059 | # echo ${RSYNC} ${RSYNC_opt} ${dm_liste} ${RUN_DIR}/${DEST} > out_rsync 2>&1 |
---|
| 1060 | # ${RSYNC} ${RSYNC_opt} ${dm_liste} ${RUN_DIR}/${DEST} >> out_rsync 2>&1 |
---|
[2] | 1061 | |
---|
| 1062 | # RET=$? |
---|
| 1063 | # IGCM_sys_Rsync_out $RET |
---|
| 1064 | |
---|
| 1065 | # ${libIGCM}/libIGCM_sys/IGCM_analyse_rsync_out.awk out_rsync |
---|
| 1066 | # (( RET=RET+$? )) |
---|
| 1067 | |
---|
| 1068 | if [ ${RET} -gt 0 ] ; then |
---|
| 1069 | echo "IGCM_sys_Get : copy error." |
---|
| 1070 | cat out_rsync |
---|
| 1071 | IGCM_debug_Exit "IGCM_sys_Get" |
---|
[343] | 1072 | else |
---|
[404] | 1073 | \rm out_rsync |
---|
[2] | 1074 | fi |
---|
| 1075 | else |
---|
[36] | 1076 | ( ${DEBUG_debug} ) && echo "DRYRUN mode = " $DRYRUN >> stack |
---|
[2] | 1077 | fi |
---|
| 1078 | IGCM_debug_PopStack "IGCM_sys_Get" |
---|
| 1079 | } |
---|
| 1080 | |
---|
| 1081 | ############################################################## A FINIR !! |
---|
| 1082 | |
---|
| 1083 | #D-#================================================== |
---|
| 1084 | #D-function IGCM_sys_GetDate_FichWork |
---|
| 1085 | #D-* Purpose: donne la date filesys d'un fichier sur le filesystem WORK |
---|
| 1086 | #D-* Examples: |
---|
| 1087 | #D- |
---|
| 1088 | function IGCM_sys_GetDate_FichWork { |
---|
| 1089 | IGCM_debug_PushStack "IGCM_sys_FichWork" $@ |
---|
| 1090 | if ( $DEBUG_sys ) ; then |
---|
| 1091 | echo "IGCM_sys_GetDate_FichWork :" $@ |
---|
| 1092 | fi |
---|
| 1093 | # donne la date filesys d'un fichier sur la machine work |
---|
| 1094 | IGCM_debug_PopStack "IGCM_sys_FichWork" |
---|
| 1095 | } |
---|
| 1096 | |
---|
| 1097 | #D-#================================================== |
---|
| 1098 | #D-function IGCM_sys_GetDate_FichArchive |
---|
[7] | 1099 | #D-* Purpose: donne la date filesys d'un fichier sur le filesystem ARCHIVE |
---|
[2] | 1100 | #D-* Examples: |
---|
| 1101 | #D- |
---|
| 1102 | function IGCM_sys_GetDate_FichArchive { |
---|
| 1103 | IGCM_debug_PushStack "IGCM_sys_FichArchive" $@ |
---|
| 1104 | if ( $DEBUG_sys ) ; then |
---|
| 1105 | echo "IGCM_sys_GetDate_FichArchive :" $@ |
---|
| 1106 | fi |
---|
| 1107 | IGCM_debug_PopStack "IGCM_sys_FichArchive" |
---|
| 1108 | } |
---|
| 1109 | |
---|
| 1110 | ############################################################## |
---|
| 1111 | # REBUILD OPERATOR |
---|
| 1112 | |
---|
| 1113 | function IGCM_sys_rebuild { |
---|
| 1114 | IGCM_debug_PushStack "IGCM_sys_rebuild" -- $@ |
---|
| 1115 | if ( $DEBUG_sys ) ; then |
---|
| 1116 | echo "IGCM_sys_rebuild :" $@ |
---|
| 1117 | fi |
---|
[31] | 1118 | /home/cont003/p86ipsl/SX8/bin/rebuild -f -o $@ |
---|
[2] | 1119 | if [ $? -gt 0 ] ; then |
---|
| 1120 | echo "IGCM_sys_rebuild : erreur ${@}." |
---|
| 1121 | IGCM_debug_Exit "rebuild" |
---|
| 1122 | fi |
---|
| 1123 | |
---|
| 1124 | IGCM_debug_PopStack "IGCM_sys_rebuild" |
---|
| 1125 | } |
---|
| 1126 | |
---|
| 1127 | ############################################################ |
---|
| 1128 | # Activate Running Environnment Variables |
---|
| 1129 | |
---|
| 1130 | function IGCM_sys_activ_variables { |
---|
| 1131 | IGCM_debug_PushStack "IGCM_sys_activ_variables" |
---|
| 1132 | if ( $DEBUG_sys ) ; then |
---|
| 1133 | echo "IGCM_sys_activ_variables" |
---|
| 1134 | fi |
---|
| 1135 | |
---|
| 1136 | # -------------------------------------------------------------------- |
---|
| 1137 | #D- MPI specifications |
---|
| 1138 | # -------------------------------------------------------------------- |
---|
| 1139 | |
---|
| 1140 | #D-- MPISUSPEND |
---|
[136] | 1141 | export MPISUSPEND=${MPISUSPEND:=OFF} |
---|
| 1142 | |
---|
| 1143 | #D-- MPIPROGINF #other choices : ALL_DETAIL2 |
---|
[2] | 1144 | export MPIPROGINF=ALL |
---|
[136] | 1145 | #D- activate ftrace (with -ftrace) |
---|
| 1146 | export F_FTRACE=YES |
---|
| 1147 | #D- communication information (with -ftrace) |
---|
| 1148 | export MPICOMMINF=DETAIL |
---|
[2] | 1149 | |
---|
| 1150 | # -------------------------------------------------------------------- |
---|
| 1151 | #D- Other specifications |
---|
| 1152 | # -------------------------------------------------------------------- |
---|
| 1153 | |
---|
| 1154 | #D- max number of character/line in output job |
---|
| 1155 | export F_SYSLEN=5000 |
---|
| 1156 | #D- number of error that can be admitted on the NEC |
---|
| 1157 | export F_ERRCNT=0 |
---|
| 1158 | #D- global performance |
---|
| 1159 | export F_PROGINF=DETAIL |
---|
[136] | 1160 | |
---|
[2] | 1161 | #D- I/O performance (FORTRAN I/O only not netCDF) |
---|
[136] | 1162 | export F_FILEINF=${F_FILEINF:=NO} |
---|
| 1163 | #D- netCDF I/O performance |
---|
| 1164 | export NC_FILEINF=${NC_FILEINF:=NO} |
---|
[2] | 1165 | |
---|
| 1166 | IGCM_debug_PopStack "IGCM_sys_activ_variables" |
---|
| 1167 | } |
---|
| 1168 | |
---|
| 1169 | ############################################################ |
---|
| 1170 | # Desactivate Running Environnment Variables |
---|
| 1171 | |
---|
| 1172 | function IGCM_sys_desactiv_variables { |
---|
| 1173 | IGCM_debug_PushStack "IGCM_sys_desactiv_variables" |
---|
| 1174 | if ( $DEBUG_sys ) ; then |
---|
| 1175 | echo "IGCM_sys_desactiv_variables" |
---|
| 1176 | fi |
---|
| 1177 | # -------------------------------------------------------------------- |
---|
| 1178 | #D- MPI specifications |
---|
| 1179 | # -------------------------------------------------------------------- |
---|
| 1180 | |
---|
| 1181 | #D-- MPIPROGINF |
---|
| 1182 | export MPIPROGINF=NO |
---|
| 1183 | |
---|
| 1184 | # -------------------------------------------------------------------- |
---|
| 1185 | #D- Other specifications |
---|
| 1186 | # -------------------------------------------------------------------- |
---|
| 1187 | |
---|
| 1188 | #D- global performance |
---|
| 1189 | export F_PROGINF=NO |
---|
| 1190 | |
---|
| 1191 | IGCM_debug_PopStack "IGCM_sys_desactiv_variables" |
---|
| 1192 | } |
---|
| 1193 | |
---|
| 1194 | ############################################################ |
---|
| 1195 | # Build run file |
---|
| 1196 | |
---|
| 1197 | function IGCM_sys_build_run_file { |
---|
| 1198 | IGCM_debug_PushStack "IGCM_sys_build_run_file" $@ |
---|
| 1199 | if ( $DEBUG_sys ) ; then |
---|
| 1200 | echo "IGCM_sys_build_run_file " $@ |
---|
| 1201 | fi |
---|
| 1202 | (( NUM_PROC_ATM = BATCH_NUM_PROC_TOT - 1 )) |
---|
| 1203 | (( NUM_PROC_OASIS = BATCH_NUM_PROC_TOT - NUM_PROC_ATM )) |
---|
| 1204 | (( NUM_PROC_OCE = BATCH_NUM_PROC_TOT - NUM_PROC_ATM )) |
---|
| 1205 | |
---|
| 1206 | if [ $1 = MPI2 ]; then |
---|
| 1207 | cat <<EOF > run_file |
---|
| 1208 | -p 1 -np 1 -e ./oasis |
---|
| 1209 | EOF |
---|
| 1210 | (( NUM_PROCESS = BATCH_NUM_PROC_TOT + 1 )) |
---|
| 1211 | config_UserChoices_JobRunOptions='"-max_np ${NUM_PROCESS} -f"' |
---|
| 1212 | |
---|
| 1213 | elif [ $1 = MPI1 ]; then |
---|
| 1214 | cat <<EOF > run_file |
---|
| 1215 | -p $NUM_PROC_OASIS -e ./oasis |
---|
| 1216 | -p $NUM_PROC_ATM -e ./lmdz.x |
---|
| 1217 | -p $NUM_PROC_OCE -e ./opa.xx |
---|
| 1218 | EOF |
---|
| 1219 | |
---|
| 1220 | fi |
---|
| 1221 | |
---|
| 1222 | IGCM_debug_PopStack "IGCM_sys_build_run_file" |
---|
| 1223 | |
---|
| 1224 | } |
---|