[192] | 1 | #!/bin/ksh |
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[99] | 2 | |
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| 3 | #************************************************************** |
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| 4 | # Author: Sebastien Denvil, Martial Mancip |
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[373] | 5 | # Contact: Sebastien.Denvil__at__ipsl.jussieu.fr |
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| 6 | # $Revision:: $ Revision of last commit |
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| 7 | # $Author:: $ Author of last commit |
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| 8 | # $Date:: $ Date of last commit |
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[99] | 9 | # IPSL (2006) |
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| 10 | # This software is governed by the CeCILL licence see libIGCM/libIGCM_CeCILL.LIC |
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| 11 | # |
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| 12 | #************************************************************** |
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| 13 | |
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| 14 | #========================================================= |
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| 15 | # The documentation of this file can be automatically generated |
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[719] | 16 | # if you use the prefix #D- for comments to be extracted. |
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[99] | 17 | # Extract with command: cat lib* | grep "^#D-" | cut -c "4-" |
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| 18 | #========================================================= |
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| 19 | |
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| 20 | #D-#================================================== |
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[192] | 21 | #D-LibIGCM_sys for Mercure SX9 |
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[99] | 22 | #D-#================================================== |
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| 23 | #D- |
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[719] | 24 | #D- This ksh library if a layer under some usefull |
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[99] | 25 | #D-environment variables and shell commands. |
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| 26 | #D-All those definitions depend on host particularities. |
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| 27 | #D-It manages a stack mechanism and test validity of operations. |
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| 28 | #D-All function described bellow must be prefixed by IGCM_sys. |
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| 29 | |
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| 30 | #==================================================== |
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| 31 | # libIGCM_sys PARAMETERS |
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| 32 | #==================================================== |
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| 33 | |
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[111] | 34 | # gawk specific location on SX9 |
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| 35 | export PATH=/applications/gawk-3.0.4/bin:${PATH} |
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| 36 | |
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[99] | 37 | #==================================================== |
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| 38 | # set DEBUG_sys to true to output calls of function |
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| 39 | typeset -r DEBUG_sys=${DEBUG_sys:=true} |
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| 40 | |
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| 41 | #==================================================== |
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| 42 | # Turn in dry run mode ? (sys_Put_Rest, sys_Put_Out, sys_Get) |
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| 43 | typeset -r DRYRUN=${DRYRUN:=0} |
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| 44 | |
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| 45 | # YOU MUST COMPILE YOUR EXE FILES FOR DRYRUN MODE ! |
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| 46 | # ------------------------------------------------------------------------------------- |
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| 47 | # | DRYRUN= | Date computations, | sys_Get | Exe | sys_Put_Out; sys_Put_Rest | |
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| 48 | # | | Cp/Exe param files | | Chmod | | |
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| 49 | # | | Qsub | | | | |
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| 50 | # ------------------------------------------------------------------------------------- |
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| 51 | # | 0 | yes | yes | yes | yes | |
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| 52 | # ------------------------------------------------------------------------------------- |
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| 53 | # | 1 | yes | yes | yes | no | |
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| 54 | # ------------------------------------------------------------------------------------- |
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| 55 | # | 2 | yes | yes | no | no | |
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| 56 | # ------------------------------------------------------------------------------------- |
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| 57 | # | 3 | yes | no | no | no | |
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| 58 | # ------------------------------------------------------------------------------------- |
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| 59 | |
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| 60 | #===================================================== |
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| 61 | # Global Variables : |
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| 62 | #===================================================== |
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| 63 | # Language : "fr" or "en" |
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| 64 | typeset -r MYLANG="fr" |
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| 65 | |
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| 66 | #===================================================== |
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[192] | 67 | # Host and user names |
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| 68 | # $hostname ou hostname |
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[228] | 69 | typeset HOST=${HOST:=$( hostname )} |
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[99] | 70 | # $username ou whoami |
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[228] | 71 | typeset LOGIN=${LOGIN:=$( whoami )} |
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[99] | 72 | # $hostname of the MASTER job |
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| 73 | typeset -r MASTER=mercure |
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| 74 | |
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| 75 | #D- |
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| 76 | #D-#================================================== |
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| 77 | #D-Program used in libIGCM |
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| 78 | #D-#================================================== |
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| 79 | |
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[742] | 80 | # Submit command |
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| 81 | typeset SUBMIT=${SUBMIT:=qsub} |
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[99] | 82 | # rsync with path |
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| 83 | typeset -r RSYNC=/home/cont003/p86denv/SX_RSYNC/bin/rsync |
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| 84 | # RSYNC_opt args to rsync |
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[192] | 85 | typeset -r RSYNC_opt="-va" |
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[99] | 86 | # ie storage filesystem |
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[540] | 87 | typeset -r STOREHOST=${MASTER} |
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[99] | 88 | |
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| 89 | #==================================================== |
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| 90 | # Host specific DIRECTORIES |
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| 91 | #==================================================== |
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| 92 | |
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[257] | 93 | # ============ CESIUM START ============ # |
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| 94 | |
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[99] | 95 | #==================================================== |
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[192] | 96 | #- Mirror libIGCM from mercure to cesium if needed |
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[587] | 97 | #ROOTSYS=$( echo ${libIGCM} | gawk -F"/" '{print $3}' ) |
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| 98 | #if [ ! ${ROOTSYS} = "home" ] ; then |
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| 99 | # typeset -r MirrorlibIGCM=${MirrorlibIGCM:=true} |
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| 100 | #else |
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| 101 | # typeset -r MirrorlibIGCM=${MirrorlibIGCM:=false} |
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| 102 | #fi |
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[192] | 103 | |
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| 104 | #==================================================== |
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[99] | 105 | #- libIGCM_POST |
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[587] | 106 | #if ( ${MirrorlibIGCM} ) ; then |
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| 107 | # PATHlibIGCM=$( echo ${libIGCM} | gawk -F"${LOGIN}/" '{print $2}' | sed -e "s&/libIGCM&&" ) |
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| 108 | # typeset -r libIGCM_POST=${HOME}/MIRROR/${PATHlibIGCM}/libIGCM |
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| 109 | #else |
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| 110 | # typeset -r libIGCM_POST=${libIGCM} |
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| 111 | #fi |
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[99] | 112 | |
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[257] | 113 | # ============ CESIUM END ============ # |
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| 114 | |
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[99] | 115 | #==================================================== |
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[717] | 116 | #- MirrorlibIGCM for frontend |
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[587] | 117 | typeset -r MirrorlibIGCM=${MirrorlibIGCM:=false} |
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[257] | 118 | |
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| 119 | #==================================================== |
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[717] | 120 | #- libIGCM_POST for frontend |
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[587] | 121 | typeset -r libIGCM_POST=${libIGCM} |
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[257] | 122 | |
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| 123 | #==================================================== |
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[587] | 124 | #- R_EXE (==> BIN_DIR = ${MODIPSL}/bin ) |
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| 125 | typeset -r R_EXE="${MODIPSL}/bin" |
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| 126 | |
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| 127 | #==================================================== |
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| 128 | #- SUBMIT_DIR : submission dir |
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| 129 | typeset SUBMIT_DIR=${SUBMIT_DIR:=${PBS_O_WORKDIR}} |
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| 130 | |
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| 131 | #==================================================== |
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[99] | 132 | #- IN |
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[545] | 133 | typeset -r R_IN=${R_IN:=/ccc/work/cont003/dsm/p86ipsl/IGCM} |
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[717] | 134 | typeset -r R_IN_ECMWF=${R_IN_ECMWF:=/ccc/work/cont003/dsm/p24data} |
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[99] | 135 | |
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| 136 | #==================================================== |
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[725] | 137 | #- ARCHIVE (dedicated to large files) |
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| 138 | typeset ARCHIVE=${CCCSTOREDIR} |
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| 139 | |
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| 140 | #==================================================== |
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| 141 | #- STORAGE (dedicated to small/medium files) |
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| 142 | typeset STORAGE=${CCCWORKDIR} |
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| 143 | |
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| 144 | #==================================================== |
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[544] | 145 | #- R_OUT |
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[725] | 146 | typeset R_OUT=${ARCHIVE}/IGCM_OUT |
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[99] | 147 | |
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| 148 | #==================================================== |
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[587] | 149 | #- R_FIG (hosting figures : monitoring and atlas, and/or small files) |
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[725] | 150 | typeset R_FIG=${STORAGE}/IGCM_OUT |
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[587] | 151 | |
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| 152 | #==================================================== |
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[544] | 153 | #- R_BUF (ONLY FOR double copy an scratch) |
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| 154 | typeset -r R_BUF=${SCRATCHDIR}/IGCM_OUT |
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| 155 | |
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| 156 | #==================================================== |
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| 157 | #- BIG_DIR : BIG_DIR to store files waiting for rebuild |
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| 158 | typeset -r BIG_DIR=${BIG_DIR:=${SCRATCHDIR}/REBUILD} |
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| 159 | |
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| 160 | #==================================================== |
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[99] | 161 | #- RUN_DIR_PATH : Temporary working directory (=> TMP) |
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| 162 | typeset -r RUN_DIR_PATH=${RUN_DIR_PATH:=${LOCALTMPDIR}} |
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| 163 | |
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| 164 | #==================================================== |
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| 165 | #- HOST_MPIRUN_COMMAND |
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| 166 | typeset -r HOST_MPIRUN_COMMAND=${HOST_MPIRUN_COMMAND:="mpirun"} |
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| 167 | |
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| 168 | #==================================================== |
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| 169 | #- Max number of arguments passed to nco operator or demigration command |
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| 170 | UNIX_MAX_LIMIT=360 |
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| 171 | |
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[616] | 172 | #==================================================== |
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| 173 | #- set PackDefault true on NEC SX9 |
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| 174 | PackDefault=true |
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| 175 | |
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| 176 | #==================================================== |
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| 177 | #- Default number of MPI task for IPSL coupled model |
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| 178 | #- required for backward compatibility |
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| 179 | #- |
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| 180 | DEFAULT_NUM_PROC_OCE=1 |
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| 181 | DEFAULT_NUM_PROC_CPL=1 |
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| 182 | (( DEFAULT_NUM_PROC_ATM = BATCH_NUM_PROC_TOT - 1 )) |
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| 183 | DEFAULT_NUM_PROC_TOTAL=${BATCH_NUM_PROC_TOT} |
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| 184 | |
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[99] | 185 | #D-#================================================== |
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[725] | 186 | #D-function IGCM_sys_ChangeArchive |
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| 187 | #D-* Purpose: if SpaceName=TEST everything is stored on SCRATCHDIR |
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| 188 | #D-* Examples: |
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| 189 | #D- |
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| 190 | function IGCM_sys_ChangeArchive { |
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| 191 | IGCM_debug_PushStack "IGCM_sys_ChangeArchive" |
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| 192 | |
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[743] | 193 | R_OUT=${SCRATCHDIR}/IGCM_OUT |
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| 194 | R_FIG=${SCRATCHDIR}/IGCM_OUT |
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[725] | 195 | |
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| 196 | IGCM_debug_Print 1 "R_OUT has been redefined = ${R_OUT}" |
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| 197 | IGCM_debug_Print 1 "R_FIG has been redefined = ${R_FIG}" |
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| 198 | |
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| 199 | IGCM_debug_PopStack "IGCM_sys_ChangeArchive" |
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| 200 | } |
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| 201 | |
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| 202 | #D-#================================================== |
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[531] | 203 | #D-function IGCM_sys_RshMaster |
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| 204 | #D-* Purpose: Connection to frontend machine. |
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| 205 | #D-* Examples: |
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| 206 | #D- |
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| 207 | function IGCM_sys_RshMaster { |
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[544] | 208 | IGCM_debug_PushStack "IGCM_sys_RshMaster" $@ |
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| 209 | ssh -t ${MASTER} /bin/ksh <<-EOF |
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| 210 | export libIGCM=${libIGCM} |
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| 211 | export DEBUG_debug=${DEBUG_debug} |
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| 212 | . ${libIGCM}/libIGCM_debug/libIGCM_debug.ksh |
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| 213 | . ${libIGCM}/libIGCM_card/libIGCM_card.ksh |
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| 214 | ${@} |
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[531] | 215 | EOF |
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[544] | 216 | if [ $? -gt 0 ] ; then |
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| 217 | echo "IGCM_sys_RshMaster : erreur." |
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| 218 | IGCM_debug_Exit "IGCM_sys_RshMaster" |
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| 219 | fi |
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| 220 | IGCM_debug_PopStack "IGCM_sys_RshMaster" |
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[531] | 221 | } |
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| 222 | |
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| 223 | #D-#================================================== |
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[99] | 224 | #D-function IGCM_sys_RshArchive |
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| 225 | #D-* Purpose: Archive rsh command |
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| 226 | #D-* Examples: |
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| 227 | #D- |
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| 228 | function IGCM_sys_RshArchive { |
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[544] | 229 | IGCM_debug_PushStack "IGCM_sys_RshArchive" $@ |
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| 230 | /bin/ksh <<-EOF |
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| 231 | ${@} |
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[99] | 232 | EOF |
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[544] | 233 | if [ $? -gt 0 ] ; then |
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| 234 | echo "IGCM_sys_RshArchive : erreur." |
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| 235 | IGCM_debug_Exit "IGCM_sys_RshArchive" |
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| 236 | fi |
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| 237 | IGCM_debug_PopStack "IGCM_sys_RshArchive" |
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[99] | 238 | } |
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| 239 | |
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| 240 | #D-#================================================== |
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| 241 | #D-function IGCM_sys_RshPost |
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| 242 | #D-* Purpose: Post-process rsh command |
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| 243 | #D-* Examples: |
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| 244 | #D- |
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| 245 | function IGCM_sys_RshPost { |
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[544] | 246 | IGCM_debug_PushStack "IGCM_sys_RshPost" $@ |
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| 247 | if ( $DEBUG_sys ) ; then |
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| 248 | echo "IGCM_sys_RshPost :" $@ |
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| 249 | fi |
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[167] | 250 | |
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[544] | 251 | #echo cat tmp_IGCM_sys_RshPost_$$ INITIAL |
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| 252 | #cat tmp_IGCM_sys_RshPost_$$ |
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| 253 | # keep standard input (stdin) for the loop onto temporary file |
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| 254 | cat >tmp_IGCM_sys_RshPost_$$ |
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| 255 | |
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| 256 | # ============ FRONTEND START ============ # |
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| 257 | |
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[582] | 258 | /bin/ksh <tmp_IGCM_sys_RshPost_$$ |
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| 259 | if [ $? -gt 0 ] ; then |
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| 260 | echo "IGCM_sys_RshPost : erreur." |
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| 261 | IGCM_debug_Exit "IGCM_sys_RshPost" |
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| 262 | fi |
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[717] | 263 | # delete temporary file |
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[582] | 264 | \rm tmp_IGCM_sys_RshPost_$$ |
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[544] | 265 | |
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| 266 | # ============ FRONTEND END ============ # |
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| 267 | |
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[257] | 268 | # ============ CESIUM START ============ # |
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[582] | 269 | # typeset NB_ESSAI DELAI status i |
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| 270 | # # number of tentative |
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| 271 | # NB_ESSAI=10 |
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| 272 | # # time delay between tentative |
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| 273 | # DELAI=10 |
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| 274 | # (( i = 0 )) |
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| 275 | # while [ $i -lt $NB_ESSAI ] ; do |
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| 276 | # ssh -t mercure01 ssh cesium /bin/ksh <tmp_IGCM_sys_RshPost_$$ |
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| 277 | # status=$? |
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| 278 | # if [ ${status} -gt 0 ]; then |
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| 279 | # IGCM_debug_Print 2 "IGCM_sys_RshPost : ssh failed ${i}/${NB_ESSAI}" |
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| 280 | # IGCM_debug_Print 2 "IGCM_sys_RshPost : sleep ${DELAI} seconds and try again." |
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| 281 | # sleep $DELAI |
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| 282 | # else |
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| 283 | # break |
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| 284 | # fi |
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| 285 | # (( i = i + 1 )) |
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| 286 | # done |
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| 287 | # # delete temporary file |
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| 288 | # /bin/rm tmp_IGCM_sys_RshPost_$$ |
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[257] | 289 | # ============ CESIUM END ============ # |
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[170] | 290 | |
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[544] | 291 | IGCM_debug_PopStack "IGCM_sys_RshPost" |
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[99] | 292 | } |
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| 293 | |
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| 294 | #D-#================================================== |
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[153] | 295 | #D-function IGCM_sys_SendMail |
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| 296 | #D-* Purpose: Send mail when simulation is over |
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| 297 | #D-* Examples: |
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| 298 | #D- |
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| 299 | function IGCM_sys_SendMail { |
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[544] | 300 | IGCM_debug_PushStack "IGCM_sys_SendMail" $@ |
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| 301 | if ( $DEBUG_sys ) ; then |
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| 302 | echo "IGCM_sys_SendMail :" $@ |
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| 303 | fi |
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[153] | 304 | |
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[544] | 305 | if ( ${ExitFlag} ) ; then |
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| 306 | status=failed |
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| 307 | else |
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| 308 | status=completed |
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| 309 | fi |
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[717] | 310 | |
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[544] | 311 | cat << END_MAIL > job_end.mail |
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[717] | 312 | Dear ${LOGIN}, |
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[437] | 313 | |
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[452] | 314 | Simulation ${config_UserChoices_JobName} is ${status} on supercomputer `hostname`. |
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[153] | 315 | Job started : ${DateBegin} |
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| 316 | Job ended : ${DateEnd} |
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[434] | 317 | Output files are available in ${R_SAVE} |
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[616] | 318 | Files to be rebuild are temporarily available in ${REBUILD_DIR} |
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| 319 | Pre-packed files are temporarily available in ${R_BUFR} |
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[452] | 320 | Script files, Script Outputs and Debug files (if necessary) are available in ${SUBMIT_DIR} |
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[153] | 321 | END_MAIL |
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| 322 | |
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[544] | 323 | if [ X"${config_UserChoices_MailName}" != X ] ; then |
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| 324 | mailx -s "${config_UserChoices_JobName} ${status}" ${config_UserChoices_MailName} < job_end.mail |
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| 325 | elif [ -f ~/.forward ] ; then |
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| 326 | mailx -s "${config_UserChoices_JobName} ${status}" $( cat ~/.forward ) < job_end.mail |
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| 327 | else |
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| 328 | mailx -s "${config_UserChoices_JobName} ${status}" ${LOGIN} < job_end.mail |
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| 329 | fi |
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[153] | 330 | |
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[544] | 331 | if [ $? -gt 0 ] ; then |
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| 332 | echo "IGCM_sys_SendMail : erreur." |
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| 333 | IGCM_debug_Exit "IGCM_sys_SendMail" |
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| 334 | fi |
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| 335 | IGCM_debug_PopStack "IGCM_sys_SendMail" |
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[153] | 336 | } |
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| 337 | |
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| 338 | #D-#================================================== |
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[99] | 339 | #D-function IGCM_sys_Mkdir |
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| 340 | #D-* Purpose: Master locale mkdir command |
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| 341 | #D-* Examples: |
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| 342 | #D- |
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| 343 | function IGCM_sys_Mkdir { |
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[544] | 344 | IGCM_debug_PushStack "IGCM_sys_Mkdir" $@ |
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| 345 | if ( $DEBUG_sys ) ; then |
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| 346 | echo "IGCM_sys_Mkdir :" $@ |
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| 347 | fi |
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[742] | 348 | |
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| 349 | typeset NB_ESSAI DELAI status i |
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| 350 | # number of tentative |
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| 351 | NB_ESSAI=3 |
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| 352 | # time delay between tentative |
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| 353 | DELAI=2 |
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| 354 | |
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[544] | 355 | if [ ! -d ${1} ]; then |
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[742] | 356 | i=0 |
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| 357 | while [ $i -lt $NB_ESSAI ] ; do |
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| 358 | \mkdir -p $1 |
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| 359 | status=$? |
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| 360 | if [ ${status} -gt 0 ] ; then |
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| 361 | IGCM_debug_Print 2 "IGCM_sys_Mkdir : mkdir failed error code ${status} ${i}/${NB_ESSAI}" |
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| 362 | IGCM_debug_Print 2 "IGCM_sys_Mkdir : sleep ${DELAI} seconds and try again." |
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| 363 | sleep $DELAI |
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| 364 | else |
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| 365 | break |
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| 366 | fi |
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| 367 | (( i = i + 1 )) |
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| 368 | done |
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[544] | 369 | fi |
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| 370 | # vérification : |
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| 371 | if [ ! -d ${1} ] ; then |
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| 372 | echo "IGCM_sys_Mkdir : erreur." |
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| 373 | IGCM_debug_Exit "IGCM_sys_Mkdir" |
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| 374 | fi |
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| 375 | IGCM_debug_PopStack "IGCM_sys_Mkdir" |
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[99] | 376 | } |
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| 377 | |
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| 378 | #D-#================================================== |
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| 379 | #D-function IGCM_sys_MkdirArchive |
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| 380 | #D-* Purpose: Mkdir on Archive |
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| 381 | #D-* Examples: |
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| 382 | #D- |
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| 383 | function IGCM_sys_MkdirArchive { |
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[544] | 384 | IGCM_debug_PushStack "IGCM_sys_MkdirArchive" $@ |
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| 385 | if ( $DEBUG_sys ) ; then |
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| 386 | echo "IGCM_sys_MkdirArchive :" $@ |
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| 387 | fi |
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[742] | 388 | |
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| 389 | typeset NB_ESSAI DELAI status i |
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| 390 | # number of tentative |
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| 391 | NB_ESSAI=3 |
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| 392 | # time delay between tentative |
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| 393 | DELAI=2 |
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| 394 | |
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[717] | 395 | if [ ! -d ${1} ]; then |
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[742] | 396 | i=0 |
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| 397 | while [ $i -lt $NB_ESSAI ] ; do |
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| 398 | \mkdir -p $1 |
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| 399 | status=$? |
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| 400 | if [ ${status} -gt 0 ] ; then |
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| 401 | IGCM_debug_Print 2 "IGCM_sys_MkdirArchive : mkdir failed error code ${status} ${i}/${NB_ESSAI}" |
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| 402 | IGCM_debug_Print 2 "IGCM_sys_MkdirArchive : sleep ${DELAI} seconds and try again." |
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| 403 | sleep $DELAI |
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| 404 | else |
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| 405 | break |
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| 406 | fi |
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| 407 | (( i = i + 1 )) |
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| 408 | done |
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[544] | 409 | fi |
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[742] | 410 | |
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| 411 | # vérification : |
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| 412 | if [ ! -d ${1} ] ; then |
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| 413 | echo "IGCM_sys_MkdirArchive : erreur." |
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| 414 | IGCM_debug_Exit "IGCM_sys_MkdirArchive" |
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| 415 | fi |
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[544] | 416 | IGCM_debug_PopStack "IGCM_sys_MkdirArchive" |
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[99] | 417 | } |
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| 418 | |
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| 419 | #D-#================================================== |
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| 420 | #D-function IGCM_sys_MkdirWork |
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| 421 | #D-* Purpose: Mkdir on Work |
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| 422 | #D-* Examples: |
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| 423 | #D- |
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| 424 | function IGCM_sys_MkdirWork { |
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[544] | 425 | IGCM_debug_PushStack "IGCM_sys_MkdirWork" $@ |
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| 426 | if ( $DEBUG_sys ) ; then |
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| 427 | echo "IGCM_sys_MkdirWork :" $@ |
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| 428 | fi |
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| 429 | #- creation de repertoire sur le serveur fichier |
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[717] | 430 | if [ ! -d ${1} ]; then |
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[544] | 431 | \mkdir -p $1 |
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| 432 | if [ $? -gt 0 ] ; then |
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| 433 | echo "IGCM_sys_MkdirWork : erreur." |
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| 434 | IGCM_debug_Exit "IGCM_sys_MkdirWork" |
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[99] | 435 | fi |
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[544] | 436 | fi |
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| 437 | IGCM_debug_PopStack "IGCM_sys_MkdirWork" |
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[99] | 438 | } |
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| 439 | |
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| 440 | #D-#================================================== |
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| 441 | #D-function IGCM_sys_Cd |
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| 442 | #D-* Purpose: master cd command |
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| 443 | #D-* Examples: |
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| 444 | #D- |
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| 445 | function IGCM_sys_Cd { |
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[544] | 446 | IGCM_debug_PushStack "IGCM_sys_Cd" $@ |
---|
| 447 | if ( $DEBUG_sys ) ; then |
---|
| 448 | echo "IGCM_sys_Cd :" $@ |
---|
| 449 | fi |
---|
| 450 | \cd $1 |
---|
| 451 | if [ $? -gt 0 ] ; then |
---|
| 452 | echo "IGCM_sys_Cd : erreur." |
---|
| 453 | IGCM_debug_Exit "IGCM_sys_Cd" |
---|
| 454 | fi |
---|
| 455 | IGCM_debug_PopStack "IGCM_sys_Cd" |
---|
[99] | 456 | } |
---|
| 457 | |
---|
| 458 | #D-#================================================== |
---|
| 459 | #D-function IGCM_sys_Chmod |
---|
| 460 | #D-* Purpose: Chmod |
---|
| 461 | #D-* Examples: |
---|
| 462 | #D- |
---|
| 463 | function IGCM_sys_Chmod { |
---|
[544] | 464 | IGCM_debug_PushStack "IGCM_sys_Chmod" -- $@ |
---|
| 465 | if ( $DEBUG_sys ) ; then |
---|
| 466 | echo "IGCM_sys_Chmod :" $@ |
---|
| 467 | fi |
---|
| 468 | if [ $DRYRUN -le 1 ]; then |
---|
| 469 | \chmod $@ |
---|
| 470 | if [ $? -gt 0 ] ; then |
---|
| 471 | echo "IGCM_sys_Chmod : erreur." |
---|
| 472 | IGCM_debug_Exit "IGCM_sys_Chmod" |
---|
[99] | 473 | fi |
---|
[544] | 474 | else |
---|
| 475 | ( ${DEBUG_debug} ) && echo "DRYRUN mode = " $DRYRUN >> stack |
---|
| 476 | fi |
---|
| 477 | IGCM_debug_PopStack "IGCM_sys_Chmod" |
---|
[99] | 478 | } |
---|
| 479 | |
---|
| 480 | #D-#================================================== |
---|
| 481 | #D-function IGCM_sys_FileSize |
---|
[544] | 482 | #D-* Purpose: Filesize |
---|
[99] | 483 | #D-* Examples: |
---|
| 484 | #D- |
---|
| 485 | function IGCM_sys_FileSize { |
---|
[544] | 486 | IGCM_debug_PushStack "IGCM_sys_FileSize" $@ |
---|
[99] | 487 | |
---|
[544] | 488 | typeset sizeF |
---|
| 489 | set +A sizeF -- $( ls -la ${1} ) |
---|
| 490 | if [ $? -gt 0 ] ; then |
---|
| 491 | IGCM_debug_Exit "IGCM_sys_FileSize" |
---|
| 492 | fi |
---|
| 493 | eval ${2}=${sizeF[4]} |
---|
[99] | 494 | |
---|
[544] | 495 | IGCM_debug_PopStack "IGCM_sys_FileSize" |
---|
[99] | 496 | } |
---|
| 497 | |
---|
| 498 | #D-#================================================== |
---|
| 499 | #D-function IGCM_sys_TestDir |
---|
| 500 | #D-* Purpose: Test Directory that must exists |
---|
| 501 | #D-* Examples: |
---|
| 502 | #D- |
---|
| 503 | function IGCM_sys_TestDir { |
---|
[544] | 504 | IGCM_debug_PushStack "IGCM_sys_TestDir" $@ |
---|
| 505 | if ( $DEBUG_sys ) ; then |
---|
| 506 | echo "IGCM_sys_TestDir :" $@ |
---|
| 507 | fi |
---|
| 508 | typeset ExistFlag |
---|
| 509 | ExistFlag=$( [ -d $1 ] && echo 0 || echo 1 ) |
---|
| 510 | IGCM_debug_PopStack "IGCM_sys_TestDir" |
---|
[99] | 511 | |
---|
[544] | 512 | return ${ExistFlag} |
---|
[99] | 513 | } |
---|
| 514 | |
---|
| 515 | #D-#================================================== |
---|
| 516 | #D-function IGCM_sys_TestDirArchive |
---|
| 517 | #D-* Purpose: Test Directory that must exists on Archive |
---|
| 518 | #D-* Examples: |
---|
| 519 | #D- |
---|
| 520 | function IGCM_sys_TestDirArchive { |
---|
[544] | 521 | IGCM_debug_PushStack "IGCM_sys_TestDirArchive" $@ |
---|
| 522 | if ( $DEBUG_sys ) ; then |
---|
| 523 | echo "IGCM_sys_TestDirArchive :" $@ |
---|
| 524 | fi |
---|
| 525 | typeset ExistFlag |
---|
| 526 | ExistFlag=$( [ -d $1 ] && echo 0 || echo 1 ) |
---|
| 527 | IGCM_debug_PopStack "IGCM_sys_TestDirArchive" |
---|
[99] | 528 | |
---|
[544] | 529 | return ${ExistFlag} |
---|
[99] | 530 | } |
---|
| 531 | |
---|
| 532 | #D-#================================================== |
---|
[548] | 533 | #D-function IGCM_sys_IsFileArchived |
---|
| 534 | #D-* Purpose: Test file that must NOT EXISTS on Archive |
---|
| 535 | #D-* Examples: |
---|
| 536 | #D- |
---|
| 537 | function IGCM_sys_IsFileArchived { |
---|
| 538 | IGCM_debug_PushStack "IGCM_sys_IsFileArchived" $@ |
---|
| 539 | if ( $DEBUG_sys ) ; then |
---|
| 540 | echo "IGCM_sys_IsFileArchived :" $@ |
---|
| 541 | fi |
---|
| 542 | typeset IsArchivedFlag |
---|
[618] | 543 | IsArchivedFlag=$( [ X$( echo $1 | grep ^\/ccc\/store ) != X ] && echo 0 || echo 1 ) |
---|
[548] | 544 | IGCM_debug_PopStack "IGCM_sys_IsFileArchived" |
---|
| 545 | |
---|
| 546 | return ${IsArchivedFlag} |
---|
| 547 | } |
---|
| 548 | |
---|
| 549 | #D-#================================================== |
---|
[99] | 550 | #D-function IGCM_sys_TestFileArchive |
---|
| 551 | #D-* Purpose: Test file that must NOT EXISTS on Archive |
---|
| 552 | #D-* Examples: |
---|
| 553 | #D- |
---|
| 554 | function IGCM_sys_TestFileArchive { |
---|
[544] | 555 | IGCM_debug_PushStack "IGCM_sys_TestFileArchive" $@ |
---|
| 556 | typeset ExistFlag |
---|
| 557 | ExistFlag=$( [ -f $1 ] && echo 0 || echo 1 ) |
---|
| 558 | IGCM_debug_PopStack "IGCM_sys_TestFileArchive" |
---|
[99] | 559 | |
---|
[544] | 560 | return ${ExistFlag} |
---|
[99] | 561 | } |
---|
| 562 | |
---|
| 563 | #D-#================================================== |
---|
[544] | 564 | #D-function IGCM_sys_TestFileBuffer |
---|
| 565 | #D-* Purpose: Test file that must NOT EXISTS on Buffer |
---|
| 566 | #D-* Examples: |
---|
| 567 | #D- |
---|
| 568 | function IGCM_sys_TestFileBuffer { |
---|
| 569 | IGCM_debug_PushStack "IGCM_sys_TestFileBuffer" $@ |
---|
| 570 | typeset ExistFlag |
---|
| 571 | ExistFlag=$( [ -f $1 ] && echo 0 || echo 1 ) |
---|
| 572 | IGCM_debug_PopStack "IGCM_sys_TestFileBuffer" |
---|
| 573 | |
---|
| 574 | return ${ExistFlag} |
---|
| 575 | } |
---|
| 576 | |
---|
| 577 | #D-#================================================== |
---|
[99] | 578 | #D-function IGCM_sys_CountFileArchive |
---|
| 579 | #D-* Purpose: Count files on Archive filesystem |
---|
| 580 | #D-* Examples: |
---|
| 581 | #D- |
---|
| 582 | function IGCM_sys_CountFileArchive { |
---|
[544] | 583 | IGCM_debug_PushStack "IGCM_sys_CountFileArchive" $@ |
---|
| 584 | ls ${@} 2>/dev/null | wc -l |
---|
| 585 | if [ $? -gt 0 ] ; then |
---|
| 586 | echo "IGCM_sys_CountFileArchive : erreur." |
---|
| 587 | fi |
---|
| 588 | IGCM_debug_PopStack "IGCM_sys_CountFileArchive" |
---|
[99] | 589 | } |
---|
| 590 | |
---|
| 591 | #D-#================================================== |
---|
[544] | 592 | #D-function IGCM_sys_CountFileBuffer |
---|
| 593 | #D-* Purpose: Count files on Scratch filesystem |
---|
| 594 | #D-* Examples: |
---|
| 595 | #D- |
---|
| 596 | function IGCM_sys_CountFileBuffer { |
---|
| 597 | IGCM_debug_PushStack "IGCM_sys_CountFileBuffer" $@ |
---|
| 598 | ls ${@} 2>/dev/null | wc -l |
---|
| 599 | if [ $? -gt 0 ] ; then |
---|
| 600 | echo "IGCM_sys_CountFileBuffer : erreur." |
---|
| 601 | fi |
---|
| 602 | IGCM_debug_PopStack "IGCM_sys_CountFileBuffer" |
---|
| 603 | } |
---|
| 604 | |
---|
| 605 | #D-#================================================== |
---|
[99] | 606 | #D-function IGCM_sys_Tree |
---|
| 607 | #D-* Purpose: Tree directories with files on ${ARCHIVE} |
---|
| 608 | #D-* Examples: IGCM_sys_Tree ${R_IN} ${R_OUT} |
---|
| 609 | #D- |
---|
| 610 | function IGCM_sys_Tree { |
---|
[544] | 611 | IGCM_debug_PushStack "IGCM_sys_Tree" $@ |
---|
| 612 | if ( $DEBUG_sys ) ; then |
---|
| 613 | echo "IGCM_sys_Tree :" $@ |
---|
| 614 | fi |
---|
[99] | 615 | |
---|
[544] | 616 | \ls -lR ${@} |
---|
[99] | 617 | |
---|
[544] | 618 | IGCM_debug_PopStack "IGCM_sys_Tree" |
---|
[99] | 619 | } |
---|
| 620 | |
---|
| 621 | #D-#================================================== |
---|
| 622 | #D-function IGCM_sys_Tar |
---|
[544] | 623 | #D-* Purpose: master tar command |
---|
[99] | 624 | #D-* Examples: |
---|
| 625 | #D- |
---|
| 626 | function IGCM_sys_Tar { |
---|
[544] | 627 | IGCM_debug_PushStack "IGCM_sys_Tar" $@ |
---|
| 628 | if ( $DEBUG_sys ) ; then |
---|
| 629 | echo "IGCM_sys_Tar :" $@ |
---|
| 630 | fi |
---|
[742] | 631 | IGCM_sys_RshMaster "\tar $@" |
---|
[544] | 632 | if [ $? -gt 0 ] ; then |
---|
| 633 | echo "IGCM_sys_Tar : erreur." |
---|
| 634 | IGCM_debug_Exit "IGCM_sys_Tar" |
---|
| 635 | fi |
---|
| 636 | IGCM_debug_PopStack "IGCM_sys_Tar" |
---|
[99] | 637 | } |
---|
| 638 | |
---|
| 639 | #D-#================================================== |
---|
| 640 | #D-function IGCM_sys_UnTar |
---|
| 641 | #D-* Purpose: master un-tar command |
---|
| 642 | #D-* Examples: |
---|
| 643 | #D- |
---|
| 644 | function IGCM_sys_UnTar { |
---|
[544] | 645 | IGCM_debug_PushStack "IGCM_sys_UnTar" $@ |
---|
| 646 | if ( $DEBUG_sys ) ; then |
---|
| 647 | echo "IGCM_sys_UnTar :" $@ |
---|
| 648 | fi |
---|
| 649 | \tar xvf $1 |
---|
| 650 | if [ $? -gt 0 ] ; then |
---|
| 651 | echo "IGCM_sys_UnTar : erreur." |
---|
| 652 | IGCM_debug_Exit "IGCM_sys_UnTar" |
---|
| 653 | fi |
---|
| 654 | IGCM_debug_PopStack "IGCM_sys_UnTar" |
---|
[99] | 655 | } |
---|
| 656 | |
---|
| 657 | #D-#================================================== |
---|
| 658 | #D-function IGCM_sys_Qsub |
---|
| 659 | #D-* Purpose: Qsub new job |
---|
| 660 | #D-* Examples: |
---|
| 661 | #D- |
---|
| 662 | function IGCM_sys_Qsub { |
---|
[544] | 663 | IGCM_debug_PushStack "IGCM_sys_Qsub" $@ |
---|
| 664 | if ( $DEBUG_sys ) ; then |
---|
| 665 | echo "IGCM_sys_Qsub :" $@ |
---|
| 666 | fi |
---|
| 667 | /usr/bin/nqsII/qsub -o ${Script_Output} -N ${config_UserChoices_JobName}.${CumulPeriod} < $1 |
---|
| 668 | if [ $? -gt 0 ] ; then |
---|
| 669 | echo "IGCM_sys_Qsub : erreur -o ${Script_Output} -N ${config_UserChoices_JobName}.${CumulPeriod} $@." |
---|
| 670 | IGCM_debug_Exit "IGCM_sys_Qsub" |
---|
| 671 | fi |
---|
| 672 | IGCM_debug_PopStack "IGCM_sys_Qsub" |
---|
[99] | 673 | } |
---|
| 674 | |
---|
| 675 | #D-#================================================== |
---|
| 676 | #D-function IGCM_sys_QsubPost |
---|
| 677 | #D-* Purpose: Qsub new job on scalaire |
---|
| 678 | #D-* Examples: |
---|
| 679 | #D- |
---|
| 680 | function IGCM_sys_QsubPost { |
---|
[544] | 681 | IGCM_debug_PushStack "IGCM_sys_QsubPost" $@ |
---|
| 682 | if ( $DEBUG_sys ) ; then |
---|
| 683 | echo "IGCM_sys_QsubPost :" $@ |
---|
| 684 | fi |
---|
| 685 | |
---|
| 686 | # ============ FRONTEND START ============ # |
---|
| 687 | |
---|
[582] | 688 | /usr/bin/nqsII/qsub -q scalaire -o ${POST_DIR}/${Script_Post_Output}.out ${libIGCM}/$1.job -v ${listVarEnv} |
---|
[544] | 689 | |
---|
| 690 | # ============ FRONTEND END ============ # |
---|
| 691 | |
---|
| 692 | # ============ CESIUM START ============ # |
---|
[582] | 693 | # typeset NB_ESSAI DELAI status i |
---|
| 694 | # # number of tentative |
---|
| 695 | # NB_ESSAI=10 |
---|
| 696 | # # time delay between tentative |
---|
| 697 | # DELAI=10 |
---|
| 698 | # (( i = 0 )) |
---|
| 699 | # while [ $i -lt $NB_ESSAI ] ; do |
---|
| 700 | # /usr/local/bin/ccc_msub -o ${POST_DIR}/${Script_Post_Output}.out -e ${POST_DIR}/${Script_Post_Output}.e.out -E "-v ${listVarEnv}" ${libIGCM_POST}/$1.job |
---|
| 701 | # status=$? |
---|
| 702 | # if [ ${status} -gt 0 ]; then |
---|
| 703 | # sleep $DELAI |
---|
| 704 | # else |
---|
| 705 | # break |
---|
| 706 | # fi |
---|
| 707 | # (( i = i + 1 )) |
---|
| 708 | # done |
---|
[544] | 709 | # ============ CESIUM END ============ # |
---|
| 710 | |
---|
| 711 | if [ $? -gt 0 ] ; then |
---|
| 712 | echo "IGCM_sys_QsubPost : erreur " $@ |
---|
| 713 | IGCM_debug_Exit "IGCM_sys_QsubPost" |
---|
| 714 | fi |
---|
| 715 | IGCM_debug_PopStack "IGCM_sys_QsubPost" |
---|
[99] | 716 | } |
---|
| 717 | |
---|
| 718 | #D-************************* |
---|
[717] | 719 | #D- File transfer functions |
---|
[99] | 720 | #D-************************* |
---|
| 721 | #D- |
---|
| 722 | |
---|
| 723 | #D-#================================================== |
---|
| 724 | #D-function IGCM_sys_Rsync_out |
---|
| 725 | #D-* Purpose: treat return val of rsync |
---|
| 726 | #D-* Examples: IGCM_sys_Rsync_out out_RET_rsync |
---|
| 727 | #D- Error values and explanations can depend on your system version. |
---|
| 728 | function IGCM_sys_Rsync_out { |
---|
[719] | 729 | status=$1 |
---|
| 730 | if [ ! $status ] ; then |
---|
[544] | 731 | echo "rsync error !" |
---|
| 732 | fi |
---|
[99] | 733 | |
---|
[544] | 734 | if [ $MYLANG = "fr" ]; then |
---|
[719] | 735 | case $status in |
---|
[544] | 736 | 0) return ;; |
---|
| 737 | 1) echo "Erreur de rsync ; RERR_SYNTAX : " |
---|
| 738 | echo "Erreur de syntaxe ou d'utilisation." |
---|
| 739 | return;; |
---|
| 740 | 2) echo "Erreur de rsync ; RERR_PROTOCOL : " |
---|
| 741 | echo "Incompatibilité de protocole." |
---|
| 742 | return;; |
---|
| 743 | 3) echo "Erreur de rsync ; RERR_FILESELECT 3" |
---|
| 744 | echo "Erreurs lors de la sélection des fichiers d'entrée sortie et" |
---|
| 745 | echo "répertoires" |
---|
| 746 | return;; |
---|
| 747 | 4) echo "Erreur de rsync ; RERR_UNSUPPORTED" |
---|
| 748 | echo "Action demandée non supportée : une tentative de manipulation de" |
---|
| 749 | echo "fichiers 64-bits sur une plate-forme qui ne les supporte pas a" |
---|
| 750 | echo "été faite ; ou une option qui est supportée par le client mais" |
---|
| 751 | echo "pas par le serveur a été spécifiée." |
---|
| 752 | return;; |
---|
| 753 | 10) echo "Erreur de rsync ; RERR_SOCKETIO" |
---|
| 754 | echo "Erreur dans le socket d'entrée sortie" |
---|
| 755 | return;; |
---|
| 756 | 11) echo "Erreur de rsync ; RERR_FILEIO" |
---|
| 757 | echo "Erreur d'entrée sortie fichier" |
---|
| 758 | return;; |
---|
| 759 | 12) echo "Erreur de rsync ; RERR_STREAMIO" |
---|
| 760 | echo "Erreur dans flux de donnée du protocole rsync" |
---|
| 761 | return;; |
---|
| 762 | 13) echo "Erreur de rsync ; RERR_MESSAGEIO" |
---|
| 763 | echo "Erreur avec les diagnostics du programme" |
---|
| 764 | return;; |
---|
| 765 | 14) echo "Erreur de rsync ; RERR_IPC" |
---|
| 766 | echo "Erreur dans le code IPC" |
---|
| 767 | return;; |
---|
| 768 | 20) echo "Erreur de rsync ; RERR_SIGNAL" |
---|
| 769 | echo "SIGUSR1 ou SIGINT reçu" |
---|
| 770 | return;; |
---|
| 771 | 21) echo "Erreur de rsync ; RERR_WAITCHILD" |
---|
| 772 | echo "Une erreur retournée par waitpid()" |
---|
| 773 | return;; |
---|
| 774 | 22) echo "Erreur de rsync ; RERR_MALLOC" |
---|
| 775 | echo "Erreur lors de l'allocation des tampons de mémoire de coeur" |
---|
| 776 | return;; |
---|
| 777 | 23) echo "" |
---|
| 778 | echo "Erreur fichier inexistant" |
---|
| 779 | return;; |
---|
| 780 | 30) echo "Erreur de rsync ; RERR_TIMEOUT" |
---|
| 781 | echo "Temps d'attente écoulé dans l'envoi/réception de données" |
---|
| 782 | return;; |
---|
[719] | 783 | *) echo "Erreur de rsync : code de retour de rsync inconnu :" $status |
---|
[544] | 784 | return;; |
---|
| 785 | esac |
---|
| 786 | elif [ $MYLANG = "en" ] ; then |
---|
[719] | 787 | case $status in |
---|
[717] | 788 | 0) return;; |
---|
[544] | 789 | 1) echo "rsync error : Syntax or usage error " |
---|
| 790 | return;; |
---|
| 791 | 2) echo "rsync error : Protocol incompatibility " |
---|
| 792 | return;; |
---|
| 793 | 3) echo "rsync error : Errors selecting input/output files, dirs" |
---|
| 794 | return;; |
---|
| 795 | 4) echo "rsync error : Requested action not supported: an attempt" |
---|
| 796 | echo "was made to manipulate 64-bit files on a platform that cannot support" |
---|
| 797 | echo "them; or an option was specified that is supported by the client and" |
---|
| 798 | echo "not by the server." |
---|
| 799 | return;; |
---|
| 800 | 5) echo "rsync error : Error starting client-server protocol" |
---|
| 801 | return;; |
---|
| 802 | 10) echo "rsync error : Error in socket I/O " |
---|
| 803 | return;; |
---|
| 804 | 11) echo "rsync error : Error in file I/O " |
---|
| 805 | return;; |
---|
| 806 | 12) echo "rsync error : Error in rsync protocol data stream " |
---|
| 807 | return;; |
---|
| 808 | 13) echo "rsync error : Errors with program diagnostics " |
---|
| 809 | return;; |
---|
| 810 | 14) echo "rsync error : Error in IPC code " |
---|
| 811 | return;; |
---|
| 812 | 20) echo "rsync error : Received SIGUSR1 or SIGINT " |
---|
| 813 | return;; |
---|
| 814 | 21) echo "rsync error : Some error returned by waitpid() " |
---|
| 815 | return;; |
---|
| 816 | 22) echo "rsync error : Error allocating core memory buffers " |
---|
| 817 | return;; |
---|
| 818 | 23) echo "rsync error : Partial transfer due to error" |
---|
| 819 | return;; |
---|
| 820 | 24) echo "rsync error : Partial transfer due to vanished source files" |
---|
| 821 | return;; |
---|
| 822 | 30) echo "rsync error : Timeout in data send/receive " |
---|
| 823 | return;; |
---|
[719] | 824 | *) echo "rsync error : return code of rsync unknown :" $status |
---|
[544] | 825 | return;; |
---|
| 826 | esac |
---|
| 827 | else |
---|
| 828 | echo "unknown language $MYLANG." |
---|
| 829 | return |
---|
| 830 | fi |
---|
[99] | 831 | } |
---|
[192] | 832 | |
---|
[99] | 833 | #D-#================================================== |
---|
[192] | 834 | #D-function IGCM_sys_Miror_libIGCM |
---|
| 835 | #D-* Purpose: Mirror libIGCM PATH and lib to cesium |
---|
| 836 | #D-* Examples: |
---|
| 837 | #D- |
---|
| 838 | function IGCM_sys_Mirror_libIGCM { |
---|
[544] | 839 | IGCM_debug_PushStack "IGCM_sys_Mirror_libIGCM" |
---|
| 840 | if ( $DEBUG_sys ) ; then |
---|
| 841 | echo "IGCM_sys_Mirror_libIGCM" |
---|
| 842 | fi |
---|
[192] | 843 | |
---|
[717] | 844 | typeset status DEST |
---|
[192] | 845 | |
---|
[544] | 846 | mkdir -p ${HOME}/MIRROR/${PATHlibIGCM} |
---|
[192] | 847 | |
---|
[544] | 848 | echo ${RSYNC} ${RSYNC_opt} ${libIGCM} ${HOME}/MIRROR/${PATHlibIGCM} > out_rsync 2>&1 |
---|
| 849 | ${RSYNC} ${RSYNC_opt} ${libIGCM} ${HOME}/MIRROR/${PATHlibIGCM} >> out_rsync 2>&1 |
---|
[717] | 850 | status=$? |
---|
[192] | 851 | |
---|
[717] | 852 | if [ ${status} -gt 0 ] ; then |
---|
[544] | 853 | echo "IGCM_sys_Mirror_libIGCM Warning : no libIGCM on cesium." |
---|
| 854 | cat out_rsync |
---|
| 855 | fi |
---|
| 856 | IGCM_debug_PopStack "IGCM_sys_Mirror_libIGCM" |
---|
[192] | 857 | } |
---|
| 858 | |
---|
| 859 | #D-#================================================== |
---|
[99] | 860 | #D-function IGCM_sys_Cp |
---|
| 861 | #D-* Purpose: generic cp |
---|
| 862 | #D-* Examples: |
---|
| 863 | #D- |
---|
| 864 | function IGCM_sys_Cp { |
---|
[544] | 865 | IGCM_debug_PushStack "IGCM_sys_Cp" $@ |
---|
| 866 | if ( $DEBUG_sys ) ; then |
---|
| 867 | echo "IGCM_sys_Cp :" $@ |
---|
| 868 | fi |
---|
[99] | 869 | |
---|
[717] | 870 | typeset status |
---|
[99] | 871 | |
---|
[544] | 872 | echo cp $@ > out_rsync 2>&1 |
---|
| 873 | \cp $@ >> out_rsync 2>&1 |
---|
[717] | 874 | status=$? |
---|
[99] | 875 | |
---|
[717] | 876 | if [ ${status} -gt 0 ] ; then |
---|
| 877 | echo "IGCM_sys_Cp : error code ${status}" |
---|
[544] | 878 | cat out_rsync |
---|
| 879 | IGCM_debug_Exit "IGCM_sys_Cp" |
---|
| 880 | else |
---|
| 881 | \rm out_rsync |
---|
| 882 | fi |
---|
| 883 | IGCM_debug_PopStack "IGCM_sys_Cp" |
---|
[99] | 884 | } |
---|
| 885 | |
---|
| 886 | #D-#================================================== |
---|
| 887 | #D-function IGCM_sys_Rm |
---|
| 888 | #D-* Purpose: generic rm |
---|
| 889 | #D-* Examples: |
---|
| 890 | #D- |
---|
| 891 | function IGCM_sys_Rm { |
---|
[544] | 892 | IGCM_debug_PushStack "IGCM_sys_Rm" -- $@ |
---|
| 893 | if ( $DEBUG_sys ) ; then |
---|
| 894 | echo "IGCM_sys_Rm :" $@ |
---|
| 895 | fi |
---|
[99] | 896 | |
---|
[717] | 897 | typeset status |
---|
[99] | 898 | |
---|
[544] | 899 | echo rm $@ > out_rsync 2>&1 |
---|
| 900 | \rm $@ >> out_rsync 2>&1 |
---|
[717] | 901 | status=$? |
---|
[99] | 902 | |
---|
[717] | 903 | if [ ${status} -gt 0 ] ; then |
---|
| 904 | echo "IGCM_sys_Rm : error code ${status}" |
---|
[544] | 905 | cat out_rsync |
---|
| 906 | IGCM_debug_Exit "IGCM_sys_Rm" |
---|
| 907 | else |
---|
| 908 | \rm out_rsync |
---|
| 909 | fi |
---|
| 910 | IGCM_debug_PopStack "IGCM_sys_Rm" |
---|
[99] | 911 | } |
---|
| 912 | |
---|
| 913 | #D-#================================================== |
---|
| 914 | #D-function IGCM_sys_Mv |
---|
| 915 | #D-* Purpose: generic move |
---|
| 916 | #D-* Examples: |
---|
| 917 | #D- |
---|
| 918 | function IGCM_sys_Mv { |
---|
[544] | 919 | IGCM_debug_PushStack "IGCM_sys_Mv" $@ |
---|
| 920 | if ( $DEBUG_sys ) ; then |
---|
| 921 | echo "IGCM_sys_Mv :" $@ |
---|
| 922 | fi |
---|
[99] | 923 | |
---|
[544] | 924 | if [ $DRYRUN = 0 ]; then |
---|
[99] | 925 | |
---|
[717] | 926 | typeset status |
---|
| 927 | |
---|
[544] | 928 | echo mv $@ > out_rsync 2>&1 |
---|
| 929 | \mv $@ >> out_rsync 2>&1 |
---|
[717] | 930 | status=$? |
---|
| 931 | |
---|
| 932 | if [ ${status} -gt 0 ] ; then |
---|
| 933 | echo "IGCM_sys_Mv : error code ${status}" |
---|
[544] | 934 | cat out_rsync |
---|
| 935 | IGCM_debug_Exit "IGCM_sys_Mv" |
---|
[173] | 936 | else |
---|
[544] | 937 | \rm out_rsync |
---|
[99] | 938 | fi |
---|
[544] | 939 | else |
---|
| 940 | ( ${DEBUG_debug} ) && echo "DRYRUN mode = " $DRYRUN >> stack |
---|
| 941 | fi |
---|
[99] | 942 | |
---|
[544] | 943 | IGCM_debug_PopStack "IGCM_sys_Mv" |
---|
[99] | 944 | } |
---|
| 945 | |
---|
| 946 | #D-#================================================== |
---|
| 947 | #D-function IGCM_sys_Put_Dir |
---|
| 948 | #D-* Purpose: Copy a complete directory on $(ARCHIVE) |
---|
| 949 | #D-* Examples: |
---|
| 950 | #D- |
---|
| 951 | function IGCM_sys_Put_Dir { |
---|
[544] | 952 | IGCM_debug_PushStack "IGCM_sys_Put_Dir" $@ |
---|
| 953 | if ( $DEBUG_sys ) ; then |
---|
| 954 | echo "IGCM_sys_Put_Dir :" $@ |
---|
| 955 | fi |
---|
| 956 | if [ $DRYRUN = 0 ]; then |
---|
| 957 | if [ ! -d ${1} ] ; then |
---|
| 958 | echo "WARNING : IGCM_sys_Put_Dir ${1} DOES NOT EXIST ." |
---|
| 959 | IGCM_debug_PopStack "IGCM_sys_Put_Dir" |
---|
| 960 | return |
---|
[99] | 961 | fi |
---|
| 962 | |
---|
[717] | 963 | typeset status |
---|
[99] | 964 | |
---|
[544] | 965 | # Only if we use rsync |
---|
| 966 | #IGCM_sys_TestDirArchive $( dirname $2 ) |
---|
| 967 | # |
---|
| 968 | #USUAL WAY |
---|
| 969 | \cp -r $1 $2 > out_rsync 2>&1 |
---|
[717] | 970 | status=$? |
---|
[99] | 971 | |
---|
[717] | 972 | if [ ${status} -gt 0 ] ; then |
---|
| 973 | echo "IGCM_sys_Put_Dir : error code ${status}" |
---|
[544] | 974 | cat out_rsync |
---|
| 975 | IGCM_debug_Exit "IGCM_sys_Put_Dir" |
---|
[99] | 976 | else |
---|
[544] | 977 | \rm out_rsync |
---|
[99] | 978 | fi |
---|
[544] | 979 | else |
---|
| 980 | ( ${DEBUG_debug} ) && echo "DRYRUN mode = " $DRYRUN >> stack |
---|
| 981 | fi |
---|
| 982 | IGCM_debug_PopStack "IGCM_sys_Put_Dir" |
---|
[99] | 983 | } |
---|
| 984 | |
---|
| 985 | #D-#================================================== |
---|
| 986 | #D-function IGCM_sys_Get_Dir |
---|
[544] | 987 | #D-* Purpose: Copy a complete directory from ${ARCHIVE} |
---|
[99] | 988 | #D-* Examples: |
---|
| 989 | #D- |
---|
| 990 | function IGCM_sys_Get_Dir { |
---|
[544] | 991 | IGCM_debug_PushStack "IGCM_sys_Get_Dir" $@ |
---|
| 992 | if ( $DEBUG_sys ) ; then |
---|
| 993 | echo "IGCM_sys_Get_Dir :" $@ |
---|
| 994 | fi |
---|
| 995 | if [ $DRYRUN = 0 ]; then |
---|
| 996 | # if [ ! -d ${1} ] ; then |
---|
| 997 | # echo "WARNING : IGCM_sys_Get_Dir ${1} DOES NOT EXIST ." |
---|
| 998 | # IGCM_debug_PopStack "IGCM_sys_Get_Dir" |
---|
| 999 | # return |
---|
| 1000 | # fi |
---|
[99] | 1001 | |
---|
[717] | 1002 | typeset NB_ESSAI DELAI status i |
---|
| 1003 | # number of tentative |
---|
| 1004 | NB_ESSAI=3 |
---|
| 1005 | # time delay between tentative |
---|
| 1006 | DELAI=2 |
---|
[99] | 1007 | |
---|
[544] | 1008 | # Only if we use rsync |
---|
| 1009 | #IGCM_sys_TestDirArchive $( dirname $2 ) |
---|
| 1010 | # |
---|
| 1011 | # USUAL WAY |
---|
[717] | 1012 | # add 'ccc_hsm get' (to demigrate all offline files) to reduce time of this command : |
---|
| 1013 | ccc_hsm get -r $1 |
---|
[99] | 1014 | |
---|
[717] | 1015 | i=0 |
---|
| 1016 | while [ $i -lt $NB_ESSAI ] ; do |
---|
| 1017 | \cp -ur $1 $2 >> out_rsync 2>&1 |
---|
| 1018 | status=$? |
---|
| 1019 | if [ ${status} -gt 0 ]; then |
---|
| 1020 | IGCM_debug_Print 2 "IGCM_sys_Get_Dir : cp failed error code ${status} ${i}/${NB_ESSAI}" |
---|
| 1021 | IGCM_debug_Print 2 "IGCM_sys_Get_Dir : sleep ${DELAI} seconds and try again." |
---|
| 1022 | sleep $DELAI |
---|
| 1023 | else |
---|
| 1024 | break |
---|
| 1025 | fi |
---|
| 1026 | (( i = i + 1 )) |
---|
| 1027 | done |
---|
| 1028 | |
---|
| 1029 | if [ ${status} -gt 0 ] ; then |
---|
[544] | 1030 | echo "IGCM_sys_Get_Dir : error." |
---|
| 1031 | cat out_rsync |
---|
| 1032 | IGCM_debug_Exit "IGCM_sys_Get_Dir" |
---|
[99] | 1033 | else |
---|
[544] | 1034 | \rm out_rsync |
---|
[99] | 1035 | fi |
---|
[544] | 1036 | else |
---|
| 1037 | ( ${DEBUG_debug} ) && echo "DRYRUN mode = " $DRYRUN >> stack |
---|
| 1038 | fi |
---|
| 1039 | IGCM_debug_PopStack "IGCM_sys_Get_Dir" |
---|
[99] | 1040 | } |
---|
| 1041 | |
---|
[689] | 1042 | #==================================================== |
---|
| 1043 | #- Call IGCM_sys_Mirror_libIGCM now ! |
---|
| 1044 | if ( $MirrorlibIGCM ) ; then |
---|
| 1045 | IGCM_sys_Mirror_libIGCM |
---|
| 1046 | fi |
---|
| 1047 | |
---|
[99] | 1048 | #D-#================================================== |
---|
| 1049 | #D-function IGCM_sys_Put_Rest |
---|
[544] | 1050 | #D-* Purpose: Put computied restarts on ${ARCHIVE}. |
---|
[99] | 1051 | #D- File and target directory must exist. |
---|
| 1052 | #D-* Examples: |
---|
| 1053 | #D- |
---|
| 1054 | function IGCM_sys_Put_Rest { |
---|
[544] | 1055 | IGCM_debug_PushStack "IGCM_sys_Put_Rest" $@ |
---|
| 1056 | if ( $DEBUG_sys ) ; then |
---|
| 1057 | echo "IGCM_sys_Put_Rest :" $@ |
---|
| 1058 | fi |
---|
| 1059 | if [ $DRYRUN = 0 ]; then |
---|
| 1060 | if [ ! -f ${1} ] ; then |
---|
| 1061 | echo "ERROR : IGCM_sys_Put_Rest ${1} DOES NOT EXIST ." |
---|
| 1062 | IGCM_debug_Exit "IGCM_sys_Put_Rest" |
---|
[99] | 1063 | fi |
---|
| 1064 | |
---|
[717] | 1065 | typeset status |
---|
[544] | 1066 | # |
---|
| 1067 | if [ X${JobType} = XRUN ] ; then |
---|
| 1068 | IGCM_sys_Chmod 444 ${1} |
---|
| 1069 | fi |
---|
[99] | 1070 | |
---|
[544] | 1071 | # |
---|
| 1072 | # USUAL WAY |
---|
| 1073 | \cp $1 $2 > out_rsync 2>&1 |
---|
[717] | 1074 | status=$? |
---|
[544] | 1075 | |
---|
[717] | 1076 | # #RSYNC WITH NETWORK SSH CALL |
---|
| 1077 | # echo ${RSYNC} ${RSYNC_opt} -e ssh ${RUN_DIR}/$1 ${STOREHOST}:${2} > out_rsync 2>&1 |
---|
| 1078 | # ${RSYNC} ${RSYNC_opt} -e ssh ${RUN_DIR}/$1 ${STOREHOST}:${2} >> out_rsync 2>&1 |
---|
[99] | 1079 | |
---|
[717] | 1080 | # #RSYNC WITH NFS USE |
---|
| 1081 | # echo ${RSYNC} ${RSYNC_opt} ${RUN_DIR}/$1 ${2} > out_rsync 2>&1 |
---|
| 1082 | # ${RSYNC} ${RSYNC_opt} ${RUN_DIR}/$1 ${2} >> out_rsync 2>&1 |
---|
[99] | 1083 | |
---|
[717] | 1084 | # status=$? |
---|
| 1085 | # IGCM_sys_Rsync_out $status |
---|
[99] | 1086 | |
---|
[717] | 1087 | # ${libIGCM}/libIGCM_sys/IGCM_analyse_rsync_out.awk out_rsync |
---|
| 1088 | # (( status=status+$? )) |
---|
[99] | 1089 | |
---|
[717] | 1090 | if [ ${status} -gt 0 ] ; then |
---|
| 1091 | echo "IGCM_sys_Put_Rest : cp failed error code ${status}" |
---|
[544] | 1092 | cat out_rsync |
---|
| 1093 | IGCM_debug_Exit "IGCM_sys_Put_Rest" |
---|
[99] | 1094 | else |
---|
[544] | 1095 | \rm out_rsync |
---|
[99] | 1096 | fi |
---|
[544] | 1097 | else |
---|
| 1098 | ( ${DEBUG_debug} ) && echo "DRYRUN mode = " $DRYRUN >> stack |
---|
| 1099 | fi |
---|
| 1100 | IGCM_debug_PopStack "IGCM_sys_Put_Rest" |
---|
[99] | 1101 | } |
---|
| 1102 | |
---|
| 1103 | #D-#================================================== |
---|
[544] | 1104 | #D-function IGCM_sys_PutBuffer_Rest |
---|
| 1105 | #D-* Purpose: Put computied restarts on ${SCRATCHDIR}. |
---|
| 1106 | #D- File and target directory must exist. |
---|
| 1107 | #D-* Examples: |
---|
| 1108 | #D- |
---|
| 1109 | function IGCM_sys_PutBuffer_Rest { |
---|
| 1110 | IGCM_debug_PushStack "IGCM_sys_PutBuffer_Rest" $@ |
---|
| 1111 | if ( $DEBUG_sys ) ; then |
---|
| 1112 | echo "IGCM_sys_PutBuffer_Rest :" $@ |
---|
| 1113 | fi |
---|
| 1114 | if [ $DRYRUN = 0 ]; then |
---|
| 1115 | if [ ! -f ${1} ] ; then |
---|
| 1116 | echo "ERROR : IGCM_sys_PutBuffer_Rest ${1} DOES NOT EXIST ." |
---|
| 1117 | IGCM_debug_Exit "IGCM_sys_PutBuffer_Rest" |
---|
| 1118 | fi |
---|
| 1119 | |
---|
[717] | 1120 | typeset status |
---|
[544] | 1121 | # |
---|
| 1122 | if [ X${JobType} = XRUN ] ; then |
---|
| 1123 | IGCM_sys_Chmod 444 ${1} |
---|
| 1124 | fi |
---|
| 1125 | |
---|
| 1126 | # |
---|
| 1127 | # USUAL WAY |
---|
| 1128 | \cp $1 $2 > out_rsync 2>&1 |
---|
[717] | 1129 | status=$? |
---|
[544] | 1130 | |
---|
[717] | 1131 | if [ ${status} -gt 0 ] ; then |
---|
| 1132 | echo "IGCM_sys_PutBuffer_Rest : error code ${status}" |
---|
[544] | 1133 | cat out_rsync |
---|
| 1134 | IGCM_debug_Exit "IGCM_sys_PutBuffer_Rest" |
---|
| 1135 | else |
---|
| 1136 | \rm out_rsync |
---|
| 1137 | fi |
---|
| 1138 | else |
---|
| 1139 | ( ${DEBUG_debug} ) && echo "DRYRUN mode = " $DRYRUN >> stack |
---|
| 1140 | fi |
---|
| 1141 | IGCM_debug_PopStack "IGCM_sys_PutBuffer_Rest" |
---|
| 1142 | } |
---|
| 1143 | |
---|
| 1144 | #D-#================================================== |
---|
[801] | 1145 | #D-function IGCM_sys_PrepareTaredRestart |
---|
| 1146 | #D-* Purpose: Prepare tared restart to be access by computing job. Identity here. |
---|
| 1147 | #D-* Examples: |
---|
| 1148 | #D- |
---|
| 1149 | function IGCM_sys_PrepareTaredRestart { |
---|
| 1150 | IGCM_debug_PushStack "IGCM_sys_PrepareTaredRestart" $@ |
---|
| 1151 | echo $1 |
---|
| 1152 | IGCM_debug_PopStack "IGCM_sys_PrepareTaredRestart" |
---|
| 1153 | } |
---|
| 1154 | |
---|
| 1155 | #D-#================================================== |
---|
[99] | 1156 | #D-function IGCM_sys_Put_Out |
---|
[544] | 1157 | #D-* Purpose: Copy a file on ${ARCHIVE} after having chmod it in readonly |
---|
[99] | 1158 | #D-* Examples: |
---|
| 1159 | #D- |
---|
| 1160 | function IGCM_sys_Put_Out { |
---|
[544] | 1161 | IGCM_debug_PushStack "IGCM_sys_Put_Out" $@ |
---|
| 1162 | if ( $DEBUG_sys ) ; then |
---|
| 1163 | echo "IGCM_sys_Put_Out :" $@ |
---|
| 1164 | fi |
---|
[717] | 1165 | |
---|
| 1166 | typeset NB_ESSAI DELAI status i exist skip |
---|
| 1167 | |
---|
| 1168 | # number of tentative |
---|
| 1169 | NB_ESSAI=3 |
---|
| 1170 | # time delay between tentative |
---|
| 1171 | DELAI=2 |
---|
| 1172 | |
---|
[544] | 1173 | if [ $DRYRUN = 0 ]; then |
---|
| 1174 | if [ ! -f ${1} ] ; then |
---|
| 1175 | echo "WARNING : IGCM_sys_Put_Out ${1} DOES NOT EXIST ." |
---|
| 1176 | IGCM_debug_PopStack "IGCM_sys_Put_Out" |
---|
| 1177 | return 1 |
---|
[99] | 1178 | fi |
---|
[544] | 1179 | # |
---|
| 1180 | IGCM_sys_MkdirArchive $( dirname $2 ) |
---|
| 1181 | # |
---|
[99] | 1182 | |
---|
[544] | 1183 | #===================================================== |
---|
| 1184 | # COMMENT OUT DOUBLE COPY ON SCRATCHDIR |
---|
| 1185 | #===================================================== |
---|
[99] | 1186 | |
---|
[544] | 1187 | #echo ${2} | grep "${R_OUT}" > /dev/null 2>&1 |
---|
| 1188 | #if [ $? -eq 0 ] ; then |
---|
| 1189 | # typeset WORKPATH FILEPATH |
---|
| 1190 | # WORKPATH=$( dirname $2 | sed -e "s|${R_OUT}|${R_BUF}|" ) |
---|
[717] | 1191 | # IGCM_sys_MkdirWork ${WORKPATH} |
---|
[544] | 1192 | # FILEPATH=${WORKPATH}/$( basename $2 ) |
---|
| 1193 | # # |
---|
| 1194 | # IGCM_sys_Cp ${1} ${FILEPATH} |
---|
| 1195 | #fi |
---|
[99] | 1196 | |
---|
[544] | 1197 | if [ X${JobType} = XRUN ] ; then |
---|
| 1198 | if [ X${3} = X ] ; then |
---|
[717] | 1199 | IGCM_sys_Chmod 444 ${1} |
---|
[544] | 1200 | fi |
---|
| 1201 | fi |
---|
| 1202 | # |
---|
[99] | 1203 | |
---|
[717] | 1204 | exist=false |
---|
| 1205 | skip=false |
---|
| 1206 | if [ -f $2 ] ; then |
---|
| 1207 | IGCM_debug_Print 1 "$2 already exist" |
---|
| 1208 | #dmget $2 |
---|
| 1209 | ccc_hsm get $2 |
---|
| 1210 | exist=true |
---|
| 1211 | if [ "X$( diff $1 $2 )" = X ] ; then |
---|
| 1212 | IGCM_debug_Print 2 "$1 and $2 are the same file, we skip the copy" |
---|
| 1213 | skip=true |
---|
| 1214 | else |
---|
| 1215 | IGCM_debug_Print 2 "$1 and $2 are not the same file, we force the copy" |
---|
| 1216 | skip=false |
---|
| 1217 | fi |
---|
| 1218 | fi |
---|
| 1219 | # |
---|
| 1220 | if ( [ X${exist} = Xtrue ] && [ X${skip} = Xfalse ] ) ; then |
---|
| 1221 | IGCM_sys_Chmod u+w $2 |
---|
| 1222 | fi |
---|
[99] | 1223 | |
---|
[717] | 1224 | if [ X${skip} = Xfalse ] ; then |
---|
[719] | 1225 | i=0 |
---|
[717] | 1226 | while [ $i -lt $NB_ESSAI ] ; do |
---|
| 1227 | # USUAL WAY |
---|
| 1228 | \cp $1 $2 > out_rsync 2>&1 |
---|
| 1229 | status=$? |
---|
| 1230 | if [ ${status} -gt 0 ]; then |
---|
| 1231 | IGCM_debug_Print 2 "IGCM_sys_Put_Out : cp failed error code ${status} ${i}/${NB_ESSAI}" |
---|
| 1232 | IGCM_debug_Print 2 "IGCM_sys_Put_Out : sleep ${DELAI} seconds and try again." |
---|
| 1233 | sleep $DELAI |
---|
| 1234 | else |
---|
| 1235 | break |
---|
| 1236 | fi |
---|
| 1237 | (( i = i + 1 )) |
---|
| 1238 | done |
---|
| 1239 | fi |
---|
[99] | 1240 | |
---|
[717] | 1241 | # #RSYNC WITH NETWORK SSH CALL |
---|
| 1242 | # echo ${RSYNC} ${RSYNC_opt} -e ssh ${RUN_DIR}/$1 ${STOREHOST}:${2} > out_rsync 2>&1 |
---|
| 1243 | # ${RSYNC} ${RSYNC_opt} -e ssh ${RUN_DIR}/$1 ${STOREHOST}:${2} >> out_rsync 2>&1 |
---|
[99] | 1244 | |
---|
[717] | 1245 | # #RSYNC WITH NFS USE |
---|
| 1246 | # echo ${RSYNC} ${RSYNC_opt} ${RUN_DIR}/$1 ${2} > out_rsync 2>&1 |
---|
| 1247 | # ${RSYNC} ${RSYNC_opt} ${RUN_DIR}/$1 ${2} >> out_rsync 2>&1 |
---|
[99] | 1248 | |
---|
[717] | 1249 | # status=$? |
---|
| 1250 | # IGCM_sys_Rsync_out $status |
---|
| 1251 | |
---|
| 1252 | # ${libIGCM}/libIGCM_sys/IGCM_analyse_rsync_out.awk out_rsync |
---|
| 1253 | # (( status=status+$? )) |
---|
| 1254 | |
---|
| 1255 | if [ ${status} -gt 0 ] ; then |
---|
[544] | 1256 | echo "IGCM_sys_Put_Out : error." |
---|
| 1257 | cat out_rsync |
---|
| 1258 | IGCM_debug_Exit "IGCM_sys_Put_Out" |
---|
[99] | 1259 | else |
---|
[544] | 1260 | \rm out_rsync |
---|
[99] | 1261 | fi |
---|
[544] | 1262 | else |
---|
| 1263 | ( ${DEBUG_debug} ) && echo "DRYRUN mode = " $DRYRUN >> stack |
---|
| 1264 | fi |
---|
| 1265 | IGCM_debug_PopStack "IGCM_sys_Put_Out" |
---|
| 1266 | return 0 |
---|
[99] | 1267 | } |
---|
| 1268 | |
---|
| 1269 | #D-#================================================== |
---|
[544] | 1270 | #D-function IGCM_sys_PutBuffer_Out |
---|
| 1271 | #D-* Purpose: Copy a file on ${SCRATCHDIR} after having chmod it in readonly |
---|
| 1272 | #D-* Examples: |
---|
| 1273 | #D- |
---|
| 1274 | function IGCM_sys_PutBuffer_Out { |
---|
| 1275 | IGCM_debug_PushStack "IGCM_sys_PutBuffer_Out" $@ |
---|
| 1276 | if ( $DEBUG_sys ) ; then |
---|
| 1277 | echo "IGCM_sys_PutBuffer_Out :" $@ |
---|
| 1278 | fi |
---|
[717] | 1279 | |
---|
| 1280 | typeset NB_ESSAI DELAI status i exist skip |
---|
| 1281 | |
---|
| 1282 | # number of tentative |
---|
| 1283 | NB_ESSAI=3 |
---|
| 1284 | # time delay between tentative |
---|
| 1285 | DELAI=2 |
---|
| 1286 | |
---|
[544] | 1287 | if [ $DRYRUN = 0 ]; then |
---|
| 1288 | if [ ! -f ${1} ] ; then |
---|
| 1289 | echo "WARNING : IGCM_sys_PutBuffer_Out ${1} DOES NOT EXIST ." |
---|
| 1290 | IGCM_debug_PopStack "IGCM_sys_PutBuffer_Out" |
---|
| 1291 | return 1 |
---|
| 1292 | fi |
---|
| 1293 | # |
---|
| 1294 | IGCM_sys_Mkdir $( dirname $2 ) |
---|
| 1295 | # |
---|
| 1296 | |
---|
| 1297 | if [ X${JobType} = XRUN ] ; then |
---|
| 1298 | if [ X${3} = X ] ; then |
---|
[717] | 1299 | IGCM_sys_Chmod 444 ${1} |
---|
[544] | 1300 | fi |
---|
| 1301 | fi |
---|
[717] | 1302 | |
---|
| 1303 | exist=false |
---|
| 1304 | skip=false |
---|
| 1305 | if [ -f $2 ] ; then |
---|
| 1306 | IGCM_debug_Print 1 "$2 already exist" |
---|
| 1307 | exist=true |
---|
| 1308 | if [ "X$( diff $1 $2 )" = X ] ; then |
---|
| 1309 | IGCM_debug_Print 2 "$1 and $2 are the same file, we skip the copy" |
---|
| 1310 | skip=true |
---|
| 1311 | else |
---|
| 1312 | IGCM_debug_Print 2 "$1 and $2 are not the same file, we force the copy" |
---|
| 1313 | skip=false |
---|
| 1314 | fi |
---|
| 1315 | fi |
---|
[544] | 1316 | # |
---|
[717] | 1317 | if ( [ X${exist} = Xtrue ] && [ X${skip} = Xfalse ] ) ; then |
---|
| 1318 | IGCM_sys_Chmod u+w $2 |
---|
| 1319 | fi |
---|
[544] | 1320 | |
---|
[717] | 1321 | if [ X${skip} = Xfalse ] ; then |
---|
| 1322 | i=0 |
---|
| 1323 | while [ $i -lt $NB_ESSAI ] ; do |
---|
| 1324 | # USUAL WAY |
---|
| 1325 | \cp $1 $2 > out_rsync 2>&1 |
---|
| 1326 | status=$? |
---|
| 1327 | if [ ${status} -gt 0 ]; then |
---|
| 1328 | IGCM_debug_Print 2 "IGCM_sys_PutBuffer_Out : cp failed error code ${status} ${i}/${NB_ESSAI}" |
---|
| 1329 | IGCM_debug_Print 2 "IGCM_sys_PutBuffer_Out : sleep ${DELAI} seconds and try again." |
---|
| 1330 | sleep $DELAI |
---|
| 1331 | else |
---|
| 1332 | break |
---|
| 1333 | fi |
---|
| 1334 | (( i = i + 1 )) |
---|
| 1335 | done |
---|
| 1336 | fi |
---|
| 1337 | |
---|
| 1338 | if [ ${status} -gt 0 ] ; then |
---|
[544] | 1339 | echo "IGCM_sys_PutBuffer_Out : error." |
---|
| 1340 | cat out_rsync |
---|
| 1341 | IGCM_debug_Exit "IGCM_sys_PutBuffer_Out" |
---|
| 1342 | else |
---|
| 1343 | \rm out_rsync |
---|
| 1344 | fi |
---|
| 1345 | else |
---|
| 1346 | ( ${DEBUG_debug} ) && echo "DRYRUN mode = " $DRYRUN >> stack |
---|
| 1347 | fi |
---|
| 1348 | IGCM_debug_PopStack "IGCM_sys_PutBuffer_Out" |
---|
| 1349 | return 0 |
---|
| 1350 | } |
---|
| 1351 | |
---|
| 1352 | #D-#================================================== |
---|
[99] | 1353 | #D-function IGCM_sys_Get |
---|
| 1354 | #D-* Purpose: Get a file from ${ARCHIVE} |
---|
| 1355 | #D-* Examples: IGCM_sys_Get myfile /destpath/myfile_with_PREFIX |
---|
| 1356 | #D- IGCM_sys_Get /l Array_contain_myfiles /destpath/ |
---|
| 1357 | function IGCM_sys_Get { |
---|
[544] | 1358 | IGCM_debug_PushStack "IGCM_sys_Get" $@ |
---|
[99] | 1359 | |
---|
[719] | 1360 | typeset DEST dm_liste ifile target file_work |
---|
[717] | 1361 | typeset NB_ESSAI DELAI status i |
---|
[99] | 1362 | |
---|
[544] | 1363 | if ( $DEBUG_sys ) ; then |
---|
| 1364 | echo "IGCM_sys_Get :" $@ |
---|
| 1365 | fi |
---|
[717] | 1366 | |
---|
| 1367 | # number of tentative |
---|
| 1368 | NB_ESSAI=3 |
---|
| 1369 | # time delay between tentative |
---|
| 1370 | DELAI=2 |
---|
| 1371 | |
---|
[544] | 1372 | if [ $DRYRUN -le 2 ]; then |
---|
| 1373 | if [ X${1} = X'/l' ] ; then |
---|
| 1374 | # test if the first file is present in the old computation : |
---|
| 1375 | eval set +A dm_liste \${${2}} |
---|
| 1376 | else |
---|
| 1377 | eval set +A dm_liste ${1} |
---|
[99] | 1378 | fi |
---|
[544] | 1379 | eval DEST=\${${#}} |
---|
[99] | 1380 | |
---|
[544] | 1381 | #===================================================== |
---|
| 1382 | # COMMENT OUT DOUBLE COPY ON SCRATCHDIR |
---|
| 1383 | #===================================================== |
---|
[99] | 1384 | |
---|
[544] | 1385 | # Is it an R_OUT file (not R_IN) ? |
---|
| 1386 | #echo ${dm_liste[0]} | grep "${R_OUT}" > /dev/null 2>&1 |
---|
| 1387 | #if [ $? -eq 0 ] ; then |
---|
| 1388 | # # Yes ? then we try to get it in SCRATCHDIR |
---|
| 1389 | # set +A file_work $( echo ${dm_liste[*]} | sed -e "s|${R_OUT}|${R_BUF}|g" ) |
---|
| 1390 | # if [ -f ${file_work[0]} ] ; then |
---|
| 1391 | # IGCM_sys_Cp ${file_work[*]} ${DEST} |
---|
| 1392 | # IGCM_debug_PopStack "IGCM_sys_Get" |
---|
| 1393 | # return |
---|
| 1394 | # fi |
---|
| 1395 | #fi |
---|
[99] | 1396 | |
---|
[587] | 1397 | ccc_hsm get ${dm_liste[*]} > out_rsync 2>&1 |
---|
[717] | 1398 | status=$? |
---|
| 1399 | if [ ${status} -gt 0 ] ; then |
---|
| 1400 | echo "WARNING IGCM_sys_Get : error code ${status}" |
---|
[544] | 1401 | cat out_rsync |
---|
| 1402 | echo "WARNING IGCM_sys_Get : will stop later if the cp fails." |
---|
| 1403 | fi |
---|
[99] | 1404 | |
---|
[717] | 1405 | #if [ ${status} -gt 0 ] ; then |
---|
[544] | 1406 | # if [ ! "X$( grep "Lost dmusrcmd connection" out_rsync )" = "X" ] ; then |
---|
| 1407 | # cat out_rsync |
---|
| 1408 | # echo "WARNING IGCM_sys_Get : Lost dmusrcmd connection : " |
---|
| 1409 | # sleep 30 |
---|
| 1410 | # echo "We try another time" |
---|
[587] | 1411 | ## dmget ${dm_liste[*]} > out_rsync 2>&1 |
---|
| 1412 | # ccc_hsm get ${dm_liste[*]} > out_rsync 2>&1 |
---|
[717] | 1413 | # status=$? |
---|
| 1414 | # if [ ${status} -gt 0 ] ; then |
---|
| 1415 | # echo "ERROR IGCM_sys_Get : again demigration error :" |
---|
| 1416 | # cat out_rsync |
---|
| 1417 | # IGCM_debug_Exit "IGCM_sys_Get" |
---|
[544] | 1418 | # fi |
---|
| 1419 | # else |
---|
| 1420 | # echo "ERROR IGCM_sys_Get : demigration error :" |
---|
| 1421 | # cat out_rsync |
---|
| 1422 | # IGCM_debug_Exit "IGCM_sys_Get" |
---|
| 1423 | # fi |
---|
| 1424 | #fi |
---|
[99] | 1425 | |
---|
[719] | 1426 | # #RSYNC WITH NETWORK SSH CALL |
---|
| 1427 | # echo ${RSYNC} ${RSYNC_opt} -e ssh ${STOREHOST}:"${dm_liste}" ${STOREHOST}:${RUN_DIR}/${DEST} > out_rsync 2>&1 |
---|
| 1428 | # ${RSYNC} ${RSYNC_opt} -e ssh ${STOREHOST}:"${dm_liste}" ${STOREHOST}:${RUN_DIR}/${DEST} >> out_rsync 2>&1 |
---|
| 1429 | |
---|
| 1430 | # #RSYNC WITH NFS USE |
---|
| 1431 | # echo ${RSYNC} ${RSYNC_opt} ${dm_liste} ${RUN_DIR}/${DEST} > out_rsync 2>&1 |
---|
| 1432 | # ${RSYNC} ${RSYNC_opt} ${dm_liste} ${RUN_DIR}/${DEST} >> out_rsync 2>&1 |
---|
| 1433 | |
---|
| 1434 | # status=$? |
---|
| 1435 | # IGCM_sys_Rsync_out $status |
---|
| 1436 | |
---|
| 1437 | # ${libIGCM}/libIGCM_sys/IGCM_analyse_rsync_out.awk out_rsync |
---|
| 1438 | # (( status=status+$? )) |
---|
| 1439 | |
---|
[544] | 1440 | #USUAL WAY |
---|
| 1441 | if [ X${1} = X'/l' ] ; then |
---|
| 1442 | for target in ${dm_liste[*]} ; do |
---|
[717] | 1443 | local_file=$( basename ${target} ) |
---|
| 1444 | # test if the target file is present before the loop |
---|
| 1445 | IGCM_sys_TestFileArchive ${target} |
---|
| 1446 | status=$? |
---|
| 1447 | if [ ${status} -gt 0 ] ; then |
---|
| 1448 | echo "IGCM_sys_Get, ERROR : regular file ${target} DOES NOT EXIST ." |
---|
| 1449 | IGCM_debug_Exit "IGCM_sys_Get" |
---|
| 1450 | else |
---|
[719] | 1451 | i=0 |
---|
[717] | 1452 | while [ $i -lt $NB_ESSAI ] ; do |
---|
| 1453 | \cp ${target} ${DEST}/${local_file} >> out_rsync 2>&1 |
---|
| 1454 | status=$? |
---|
| 1455 | if [ ${status} -gt 0 ]; then |
---|
| 1456 | IGCM_debug_Print 2 "IGCM_sys_Get : cp failed error code ${status} ${i}/${NB_ESSAI}" |
---|
| 1457 | IGCM_debug_Print 2 "IGCM_sys_Get : sleep ${DELAI} seconds and try again." |
---|
| 1458 | sleep $DELAI |
---|
| 1459 | else |
---|
| 1460 | break |
---|
| 1461 | fi |
---|
| 1462 | (( i = i + 1 )) |
---|
| 1463 | done |
---|
[719] | 1464 | if [ ${status} -gt 0 ] ; then |
---|
| 1465 | echo "IGCM_sys_Get : error" |
---|
| 1466 | cat out_rsync |
---|
| 1467 | \rm out_rsync |
---|
| 1468 | IGCM_debug_Exit "IGCM_sys_Get" |
---|
| 1469 | else |
---|
| 1470 | \rm out_rsync |
---|
| 1471 | fi |
---|
[717] | 1472 | fi |
---|
[544] | 1473 | done |
---|
| 1474 | else |
---|
[719] | 1475 | i=0 |
---|
| 1476 | while [ $i -lt $NB_ESSAI ] ; do |
---|
| 1477 | \cp ${dm_liste} ${DEST} >> out_rsync 2>&1 |
---|
| 1478 | status=$? |
---|
| 1479 | if [ ${status} -gt 0 ]; then |
---|
| 1480 | IGCM_debug_Print 2 "IGCM_sys_Get : cp failed error code ${status} ${i}/${NB_ESSAI}" |
---|
| 1481 | IGCM_debug_Print 2 "IGCM_sys_Get : sleep ${DELAI} seconds and try again." |
---|
| 1482 | sleep $DELAI |
---|
| 1483 | else |
---|
| 1484 | break |
---|
| 1485 | fi |
---|
| 1486 | (( i = i + 1 )) |
---|
| 1487 | done |
---|
| 1488 | if [ ${status} -gt 0 ] ; then |
---|
| 1489 | echo "IGCM_sys_Get : error" |
---|
| 1490 | cat out_rsync |
---|
| 1491 | \rm out_rsync |
---|
| 1492 | IGCM_debug_Exit "IGCM_sys_Get" |
---|
| 1493 | else |
---|
| 1494 | \rm out_rsync |
---|
| 1495 | fi |
---|
[544] | 1496 | fi |
---|
| 1497 | else |
---|
| 1498 | ( ${DEBUG_debug} ) && echo "DRYRUN mode = " $DRYRUN >> stack |
---|
| 1499 | fi |
---|
| 1500 | IGCM_debug_PopStack "IGCM_sys_Get" |
---|
[99] | 1501 | } |
---|
| 1502 | |
---|
| 1503 | #D-#================================================== |
---|
[544] | 1504 | #D-function IGCM_sys_GetBuffer |
---|
| 1505 | #D-* Purpose: Get a file from ${SCRATCHDIR} |
---|
| 1506 | #D-* Examples: IGCM_sys_GetBuffer myfile /destpath/myfile_with_PREFIX |
---|
| 1507 | #D- IGCM_sys_GetBuffer /l Array_contain_myfiles /destpath/ |
---|
| 1508 | function IGCM_sys_GetBuffer { |
---|
| 1509 | IGCM_debug_PushStack "IGCM_sys_GetBuffer" $@ |
---|
| 1510 | |
---|
[719] | 1511 | typeset DEST buf_liste ifile target file_work |
---|
| 1512 | typeset NB_ESSAI DELAI status i |
---|
[544] | 1513 | |
---|
| 1514 | if ( $DEBUG_sys ) ; then |
---|
| 1515 | echo "IGCM_sys_GetBuffer :" $@ |
---|
| 1516 | fi |
---|
[719] | 1517 | |
---|
| 1518 | # number of tentative |
---|
| 1519 | NB_ESSAI=3 |
---|
| 1520 | # time delay between tentative |
---|
| 1521 | DELAI=2 |
---|
| 1522 | |
---|
[544] | 1523 | if [ $DRYRUN -le 2 ]; then |
---|
| 1524 | if [ X${1} = X'/l' ] ; then |
---|
| 1525 | # test if the first file is present in the old computation : |
---|
| 1526 | eval set +A buf_liste \${${2}} |
---|
| 1527 | else |
---|
| 1528 | eval set +A buf_liste ${1} |
---|
| 1529 | fi |
---|
| 1530 | eval DEST=\${${#}} |
---|
| 1531 | |
---|
| 1532 | #USUAL WAY |
---|
| 1533 | if [ X${1} = X'/l' ] ; then |
---|
| 1534 | for target in ${buf_liste[*]} ; do |
---|
[717] | 1535 | local_file=$( basename ${target} ) |
---|
[719] | 1536 | i=0 |
---|
| 1537 | while [ $i -lt $NB_ESSAI ] ; do |
---|
| 1538 | \cp ${target} ${DEST}/${local_file} >> out_rsync 2>&1 |
---|
| 1539 | status=$? |
---|
| 1540 | if [ ${status} -gt 0 ]; then |
---|
| 1541 | IGCM_debug_Print 2 "IGCM_sys_GetBuffer : cp failed error code ${status} ${i}/${NB_ESSAI}" |
---|
| 1542 | IGCM_debug_Print 2 "IGCM_sys_GetBuffer : sleep ${DELAI} seconds and try again." |
---|
| 1543 | sleep $DELAI |
---|
| 1544 | else |
---|
| 1545 | break |
---|
| 1546 | fi |
---|
| 1547 | (( i = i + 1 )) |
---|
| 1548 | done |
---|
| 1549 | if [ ${status} -gt 0 ] ; then |
---|
| 1550 | echo "IGCM_sys_Get : error" |
---|
| 1551 | cat out_rsync |
---|
| 1552 | \rm out_rsync |
---|
| 1553 | IGCM_debug_Exit "IGCM_sys_GetBuffer" |
---|
| 1554 | else |
---|
| 1555 | \rm out_rsync |
---|
| 1556 | fi |
---|
[544] | 1557 | done |
---|
| 1558 | else |
---|
[719] | 1559 | i=0 |
---|
| 1560 | while [ $i -lt $NB_ESSAI ] ; do |
---|
| 1561 | \cp ${buf_liste} ${DEST} >> out_rsync 2>&1 |
---|
| 1562 | status=$? |
---|
| 1563 | if [ ${status} -gt 0 ]; then |
---|
| 1564 | IGCM_debug_Print 2 "IGCM_sys_GetBuffer : cp failed error code ${status} ${i}/${NB_ESSAI}" |
---|
| 1565 | IGCM_debug_Print 2 "IGCM_sys_GetBuffer : sleep ${DELAI} seconds and try again." |
---|
| 1566 | sleep $DELAI |
---|
| 1567 | else |
---|
| 1568 | break |
---|
| 1569 | fi |
---|
| 1570 | (( i = i + 1 )) |
---|
| 1571 | done |
---|
| 1572 | if [ ${status} -gt 0 ] ; then |
---|
| 1573 | echo "IGCM_sys_Get : error" |
---|
| 1574 | cat out_rsync |
---|
| 1575 | \rm out_rsync |
---|
| 1576 | IGCM_debug_Exit "IGCM_sys_GetBuffer" |
---|
| 1577 | else |
---|
| 1578 | \rm out_rsync |
---|
| 1579 | fi |
---|
[544] | 1580 | fi |
---|
| 1581 | else |
---|
| 1582 | ( ${DEBUG_debug} ) && echo "DRYRUN mode = " $DRYRUN >> stack |
---|
| 1583 | fi |
---|
| 1584 | IGCM_debug_PopStack "IGCM_sys_GetBuffer" |
---|
| 1585 | } |
---|
| 1586 | |
---|
| 1587 | #D-#================================================== |
---|
[99] | 1588 | #D-function IGCM_sys_GetDate_FichWork |
---|
| 1589 | #D-* Purpose: donne la date filesys d'un fichier sur le filesystem WORK |
---|
| 1590 | #D-* Examples: |
---|
| 1591 | #D- |
---|
| 1592 | function IGCM_sys_GetDate_FichWork { |
---|
[544] | 1593 | IGCM_debug_PushStack "IGCM_sys_FichWork" $@ |
---|
| 1594 | if ( $DEBUG_sys ) ; then |
---|
| 1595 | echo "IGCM_sys_GetDate_FichWork :" $@ |
---|
| 1596 | fi |
---|
| 1597 | typeset dateF |
---|
[689] | 1598 | set +A dateF -- $( IGCM_sys_RshMaster "ls -l --full-time --time-style='+%Y%m%d%H%M%S' ${1}" ) |
---|
[544] | 1599 | eval ${2}=${dateF[5]} |
---|
[540] | 1600 | |
---|
[99] | 1601 | # donne la date filesys d'un fichier sur la machine work |
---|
[544] | 1602 | IGCM_debug_PopStack "IGCM_sys_FichWork" |
---|
[99] | 1603 | } |
---|
| 1604 | |
---|
| 1605 | #D-#================================================== |
---|
| 1606 | #D-function IGCM_sys_GetDate_FichArchive |
---|
[717] | 1607 | #D-* Purpose: donne la date filesys d'un fichier sur le filesystem ARCHIVE |
---|
[99] | 1608 | #D-* Examples: |
---|
| 1609 | #D- |
---|
| 1610 | function IGCM_sys_GetDate_FichArchive { |
---|
[544] | 1611 | IGCM_debug_PushStack "IGCM_sys_FichArchive" $@ |
---|
| 1612 | if ( $DEBUG_sys ) ; then |
---|
| 1613 | echo "IGCM_sys_GetDate_FichArchive :" $@ |
---|
| 1614 | fi |
---|
| 1615 | typeset dateF |
---|
[689] | 1616 | set +A dateF -- $( IGCM_sys_RshMaster "ls -l --full-time --time-style='+%Y%m%d%H%M%S' ${1}" ) |
---|
[544] | 1617 | eval ${2}=${dateF[5]} |
---|
[540] | 1618 | |
---|
[544] | 1619 | IGCM_debug_PopStack "IGCM_sys_FichArchive" |
---|
[99] | 1620 | } |
---|
| 1621 | |
---|
| 1622 | ############################################################## |
---|
| 1623 | # REBUILD OPERATOR |
---|
| 1624 | |
---|
| 1625 | function IGCM_sys_rebuild { |
---|
[544] | 1626 | IGCM_debug_PushStack "IGCM_sys_rebuild" -- $@ |
---|
| 1627 | if ( $DEBUG_sys ) ; then |
---|
| 1628 | echo "IGCM_sys_rebuild :" $@ |
---|
| 1629 | fi |
---|
[717] | 1630 | |
---|
[734] | 1631 | typeset NB_ESSAI DELAI status i firstArg |
---|
[717] | 1632 | # number of tentative |
---|
| 1633 | NB_ESSAI=3 |
---|
| 1634 | # time delay between tentative |
---|
| 1635 | DELAI=2 |
---|
| 1636 | |
---|
| 1637 | i=0 |
---|
| 1638 | while [ $i -lt $NB_ESSAI ] ; do |
---|
| 1639 | /home/cont003/p86ipsl/SX8/bin/rebuild -f -o $@ > out_rsync 2>&1 |
---|
| 1640 | status=$? |
---|
| 1641 | if [ ${status} -gt 0 ] ; then |
---|
| 1642 | IGCM_debug_Print 2 "IGCM_sys_rebuild : error code ${status}" |
---|
| 1643 | cat out_rsync |
---|
| 1644 | \rm out_rsync |
---|
| 1645 | IGCM_debug_Print 2 "IGCM_sys_rebuild : ${i}/${NB_ESSAI} sleep ${DELAI} seconds and try again." |
---|
[734] | 1646 | firstArg=${1} |
---|
| 1647 | \rm ${firstArg} |
---|
[733] | 1648 | sleep $DELAI |
---|
[717] | 1649 | else |
---|
| 1650 | \rm out_rsync |
---|
| 1651 | break |
---|
| 1652 | fi |
---|
| 1653 | (( i = i + 1 )) |
---|
| 1654 | done |
---|
| 1655 | |
---|
[725] | 1656 | if [ ${status} -gt 0 ] ; then |
---|
[717] | 1657 | echo "IGCM_sys_rebuild : rebuild error" |
---|
[544] | 1658 | IGCM_debug_Exit "rebuild" |
---|
| 1659 | fi |
---|
[99] | 1660 | |
---|
[544] | 1661 | IGCM_debug_PopStack "IGCM_sys_rebuild" |
---|
[99] | 1662 | } |
---|
| 1663 | |
---|
[697] | 1664 | function IGCM_sys_rebuild_station { |
---|
| 1665 | IGCM_debug_PushStack "IGCM_sys_rebuild_station" -- $@ |
---|
| 1666 | typeset i list_opt file_in file_out prefix_invert list_invert |
---|
| 1667 | if ( $DEBUG_sys ) ; then |
---|
| 1668 | echo "IGCM_sys_rebuild_station :" $@ |
---|
| 1669 | fi |
---|
| 1670 | list_opt=$@ |
---|
| 1671 | |
---|
| 1672 | # Invert Axis : t,x -> x,t |
---|
| 1673 | # t,pres,x -> x,t,pres |
---|
| 1674 | # So that we can concatenate along x |
---|
| 1675 | i=0 |
---|
| 1676 | for file_in in ${list_opt} ; do |
---|
| 1677 | (( i = i + 1)) |
---|
| 1678 | [ ${i} = 1 ] && file_out=${file_in} && continue |
---|
| 1679 | prefix_invert=$( basename ${file_in} .nc ) |
---|
| 1680 | IGCM_sys_ncpdq -a x,time_counter -a x,time_counter,presnivs ${file_in} ${prefix_invert}_xt.nc |
---|
| 1681 | list_invert[${#list_invert[*]}]=${prefix_invert}_xt.nc |
---|
| 1682 | done |
---|
| 1683 | |
---|
| 1684 | # Concatenate |
---|
| 1685 | IGCM_sys_ncrcat ${list_invert[*]} histstn_xt.nc |
---|
| 1686 | |
---|
| 1687 | # Re-ivert file |
---|
| 1688 | IGCM_sys_ncpdq -a time_counter,x -a time_counter,presnivs,x histstn_xt.nc ${file_out} |
---|
| 1689 | |
---|
| 1690 | # Station re-ordering is too expansive to be run within libICGM |
---|
| 1691 | # This is due to (ncpdq - nrcat - ncpdq) I/O sequence. |
---|
| 1692 | # This re-ordering must be done "in memory" by the cmorization process |
---|
| 1693 | # Anyway this is the best sequence using (ncpdq - nrcat - ncpdq) |
---|
| 1694 | # BEGIN reordering |
---|
| 1695 | |
---|
| 1696 | # Only LMDZ text output contains the exact ordering of the station. |
---|
| 1697 | # We isolate this in the code below: |
---|
| 1698 | # 0 38 -157.5000000000000 70.98591549295774 |
---|
| 1699 | # 0 54 27.49999999999999 67.18309859154928 |
---|
| 1700 | # 0 56 -62.50000000000001 82.39436619718309 |
---|
| 1701 | # 0 79 12.49999999999999 78.59154929577466 |
---|
| 1702 | # 0 116 -165.0000000000000 76.05633802816901 |
---|
| 1703 | # 0 117 130.0000000000000 70.98591549295774 |
---|
| 1704 | # 0 118 110.0000000000000 87.46478873239437 |
---|
| 1705 | # 1 40 4.999999999999995 51.97183098591550 |
---|
| 1706 | # typeset iStation iProc list_opt file_in file_out prefix_invert |
---|
| 1707 | # typeset -Z4 j4 |
---|
| 1708 | # typeset -Z3 j3 |
---|
| 1709 | |
---|
| 1710 | # unset list_opt |
---|
| 1711 | # set +A list_opt $@ |
---|
| 1712 | |
---|
| 1713 | # Filename after rebuild |
---|
| 1714 | # file_out=${list_opt[0]} |
---|
| 1715 | # Prefix of output files |
---|
| 1716 | # prefix_invert=$( basename ${file_out} .nc ) |
---|
| 1717 | # Number of procs |
---|
| 1718 | # num_proc=$( grep -i mpi_size ${PREFIX}_${Exe_Output} | wc -l ) |
---|
| 1719 | |
---|
| 1720 | # iProc=0 |
---|
| 1721 | # while [ ${iProc} -lt ${num_proc} ] ; do |
---|
| 1722 | # Array containing Station as a number |
---|
| 1723 | # unset proc_stn |
---|
| 1724 | # set +A proc_stn $( grep "iophy_mpi rank ip lon lat $iProc" ${PREFIX}_${Exe_Output} | sed -e "s/iophy_mpi rank ip lon lat //g" | awk ' {print $2}' ) |
---|
| 1725 | # Number of stations produced by processor proc |
---|
| 1726 | # stationLast=${#proc_stn[*]} |
---|
| 1727 | # Proc number on 4 digits |
---|
| 1728 | # j4=${iProc} |
---|
| 1729 | # Init |
---|
| 1730 | # iStation=0 |
---|
| 1731 | # while [ ${iStation} -lt ${stationLast} ] ; do |
---|
| 1732 | # Station number on 3 digits |
---|
| 1733 | # j3=${proc_stn[${iStation}]} |
---|
| 1734 | # Extract station |
---|
| 1735 | # Invert Axis : t,x -> x,t |
---|
| 1736 | # t,pres,x -> x,t,pres |
---|
| 1737 | # So that we can concatenate along x |
---|
| 1738 | # IGCM_sys_ncpdq -a x,time_counter -a x,time_counter,presnivs -d x,$iStation,$iStation ${prefix_invert}_${j4}.nc ${prefix_invert}_stn_${j3}.nc |
---|
| 1739 | # (( iStation = iStation + 1 )) |
---|
| 1740 | # done |
---|
| 1741 | # (( iProc = iProc + 1 )) |
---|
| 1742 | # done |
---|
| 1743 | |
---|
| 1744 | # Concatenate all station along x |
---|
| 1745 | # IGCM_sys_ncrcat ${prefix_invert}_stn_???.nc ${prefix_invert}_xt.nc |
---|
| 1746 | |
---|
| 1747 | # Re-invert file |
---|
| 1748 | # IGCM_sys_ncpdq -a time_counter,x -a time_counter,presnivs,x ${prefix_invert}_xt.nc ${file_out} |
---|
| 1749 | |
---|
| 1750 | # END reordering |
---|
| 1751 | |
---|
| 1752 | IGCM_debug_PopStack "IGCM_sys_rebuild_station" |
---|
| 1753 | } |
---|
| 1754 | |
---|
[99] | 1755 | ############################################################ |
---|
| 1756 | # Activate Running Environnment Variables |
---|
| 1757 | |
---|
| 1758 | function IGCM_sys_activ_variables { |
---|
[544] | 1759 | IGCM_debug_PushStack "IGCM_sys_activ_variables" |
---|
| 1760 | if ( $DEBUG_sys ) ; then |
---|
| 1761 | echo "IGCM_sys_activ_variables" |
---|
| 1762 | fi |
---|
[99] | 1763 | |
---|
| 1764 | # -------------------------------------------------------------------- |
---|
| 1765 | #D- MPI specifications |
---|
| 1766 | # -------------------------------------------------------------------- |
---|
| 1767 | |
---|
| 1768 | #D-- MPISUSPEND |
---|
[544] | 1769 | export MPISUSPEND=${MPISUSPEND:=OFF} |
---|
[136] | 1770 | |
---|
| 1771 | #D-- MPIPROGINF #other choices : ALL_DETAIL2 |
---|
[544] | 1772 | export MPIPROGINF=ALL |
---|
[136] | 1773 | #D- activate ftrace (with -ftrace) |
---|
[544] | 1774 | export F_FTRACE=YES |
---|
[136] | 1775 | #D- communication information (with -ftrace) |
---|
[544] | 1776 | export MPICOMMINF=DETAIL |
---|
[99] | 1777 | |
---|
| 1778 | # -------------------------------------------------------------------- |
---|
| 1779 | #D- Other specifications |
---|
| 1780 | # -------------------------------------------------------------------- |
---|
| 1781 | |
---|
| 1782 | #D- max number of character/line in output job |
---|
[544] | 1783 | export F_SYSLEN=5000 |
---|
[99] | 1784 | #D- number of error that can be admitted on the NEC |
---|
[544] | 1785 | export F_ERRCNT=0 |
---|
[99] | 1786 | #D- global performance |
---|
[544] | 1787 | export F_PROGINF=DETAIL |
---|
[136] | 1788 | |
---|
[99] | 1789 | #D- I/O performance (FORTRAN I/O only not netCDF) |
---|
[544] | 1790 | export F_FILEINF=${F_FILEINF:=NO} |
---|
[136] | 1791 | #D- netCDF I/O performance |
---|
[544] | 1792 | export NC_FILEINF=${NC_FILEINF:=NO} |
---|
[99] | 1793 | |
---|
[544] | 1794 | IGCM_debug_PopStack "IGCM_sys_activ_variables" |
---|
[99] | 1795 | } |
---|
| 1796 | |
---|
| 1797 | ############################################################ |
---|
| 1798 | # Desactivate Running Environnment Variables |
---|
| 1799 | |
---|
| 1800 | function IGCM_sys_desactiv_variables { |
---|
[544] | 1801 | IGCM_debug_PushStack "IGCM_sys_desactiv_variables" |
---|
| 1802 | if ( $DEBUG_sys ) ; then |
---|
| 1803 | echo "IGCM_sys_desactiv_variables" |
---|
| 1804 | fi |
---|
[99] | 1805 | # -------------------------------------------------------------------- |
---|
| 1806 | #D- MPI specifications |
---|
| 1807 | # -------------------------------------------------------------------- |
---|
| 1808 | |
---|
| 1809 | #D-- MPIPROGINF |
---|
[544] | 1810 | export MPIPROGINF=NO |
---|
[99] | 1811 | |
---|
| 1812 | # -------------------------------------------------------------------- |
---|
| 1813 | #D- Other specifications |
---|
| 1814 | # -------------------------------------------------------------------- |
---|
| 1815 | |
---|
| 1816 | #D- global performance |
---|
[544] | 1817 | export F_PROGINF=NO |
---|
[99] | 1818 | |
---|
[544] | 1819 | IGCM_debug_PopStack "IGCM_sys_desactiv_variables" |
---|
[99] | 1820 | } |
---|
| 1821 | |
---|
| 1822 | ############################################################ |
---|
[621] | 1823 | # Build MPI/OMP scripts |
---|
[717] | 1824 | function IGCM_sys_build_execution_scripts |
---|
[621] | 1825 | { |
---|
[664] | 1826 | IGCM_debug_PushStack "IGCM_sys_build_execution_scripts" $@ |
---|
| 1827 | if ( $DEBUG_sys ) ; then |
---|
| 1828 | echo "IGCM_sys_build_execution_scripts " $@ |
---|
| 1829 | fi |
---|
[99] | 1830 | |
---|
[664] | 1831 | typeset NbNodes_Job NbProc_Job comp_proc_mpi_loc comp_proc_omp_loc mpi_count |
---|
| 1832 | |
---|
| 1833 | if [ ! -f ${SUBMIT_DIR}/Job_${config_UserChoices_JobName} ] ; then |
---|
| 1834 | IGCM_debug_Exit "IGCM_sys_mercurex9 build_execution_scripts : Job_${config_UserChoices_JobName} don't exist in SUBMIT_DIR : ${SUBMIT_DIR} " |
---|
| 1835 | fi |
---|
[621] | 1836 | |
---|
[664] | 1837 | if ( ${OK_PARA_MPMD} ) ; then |
---|
[621] | 1838 | |
---|
[664] | 1839 | if [ -f run_file ] ; then |
---|
| 1840 | IGCM_sys_Rm -f run_file |
---|
| 1841 | fi |
---|
| 1842 | touch run_file |
---|
[621] | 1843 | |
---|
[664] | 1844 | if ( ${OK_PARA_OMP} ) ; then |
---|
| 1845 | IGCM_debug_Print 2 "Error in config.card on SX9 : OpenMP not available" |
---|
| 1846 | exit 1 |
---|
| 1847 | else |
---|
[621] | 1848 | # OLD : |
---|
| 1849 | #PBS -v BATCH_NUM_PROC_TOT=4 |
---|
| 1850 | #PBS -l cpunum_job=${BATCH_NUM_PROC_TOT} |
---|
[664] | 1851 | echo "Job_${config_UserChoices_JobName} includes BATCH_NUM_PROC_TOT = \c" |
---|
| 1852 | cat ${SUBMIT_DIR}/Job_${config_UserChoices_JobName} | grep -- "-v *BATCH_NUM_PROC_TOT" | sed -e "s/.*BATCH_NUM_PROC_TOT *= *//" |
---|
| 1853 | NbProc_Job=$( cat ${SUBMIT_DIR}/Job_${config_UserChoices_JobName} | grep -- "-v *BATCH_NUM_PROC_TOT" | sed -e "s/.*BATCH_NUM_PROC_TOT *= *//" ) |
---|
| 1854 | NbProc_Job=${NbProc_Job:=0} |
---|
| 1855 | if [ ${NbProc_Job} -eq 0 ] ; then |
---|
| 1856 | IGCM_debug_Print 2 "Error in Job_${config_UserChoices_JobName} ressources : no BATCH_NUM_PROC_TOT defined with MPI only run." |
---|
| 1857 | exit 1 |
---|
| 1858 | fi |
---|
| 1859 | fi |
---|
[621] | 1860 | |
---|
| 1861 | # run_file construction |
---|
| 1862 | |
---|
| 1863 | # Then first loop on the components for the coupler ie oasis |
---|
| 1864 | |
---|
| 1865 | ### the coupler ie oasis must be the first one |
---|
| 1866 | for comp in ${config_ListOfComponents[*]} ; do |
---|
[664] | 1867 | |
---|
| 1868 | eval ExeNameIn=\${config_Executable_${comp}[0]} |
---|
| 1869 | eval ExeNameOut=\${config_Executable_${comp}[1]} |
---|
| 1870 | |
---|
| 1871 | # for CPL component only |
---|
| 1872 | if [ "X${comp}" = "XCPL" ] ; then |
---|
| 1873 | |
---|
| 1874 | eval comp_proc_mpi_loc=\${${comp}_PROC_MPI} |
---|
| 1875 | eval comp_proc_omp_loc=\${${comp}_PROC_OMP} |
---|
[621] | 1876 | |
---|
[664] | 1877 | if ( ${OK_PARA_MPI} ) ; then |
---|
| 1878 | echo "-p ${comp_proc_mpi_loc} -e ./${ExeNameOut}" >> run_file |
---|
[621] | 1879 | fi |
---|
[664] | 1880 | fi |
---|
[621] | 1881 | done |
---|
| 1882 | |
---|
| 1883 | # Then second loop on the components |
---|
| 1884 | |
---|
| 1885 | for comp in ${config_ListOfComponents[*]} ; do |
---|
[664] | 1886 | |
---|
| 1887 | eval ExeNameIn=\${config_Executable_${comp}[0]} |
---|
| 1888 | eval ExeNameOut=\${config_Executable_${comp}[1]} |
---|
| 1889 | |
---|
| 1890 | # Only if we really have an executable for the component and not the coupler ie oasis: |
---|
| 1891 | if ( [ "X${ExeNameOut}" != X\"\" ] && [ "X${comp}" != "XCPL" ] ) ; then |
---|
| 1892 | |
---|
| 1893 | eval comp_proc_mpi_loc=\${${comp}_PROC_MPI} |
---|
| 1894 | eval comp_proc_omp_loc=\${${comp}_PROC_OMP} |
---|
[621] | 1895 | |
---|
[664] | 1896 | if ( ${OK_PARA_MPI} ) ; then |
---|
| 1897 | echo "-p ${comp_proc_mpi_loc} -e ./${ExeNameOut}" >> run_file |
---|
[621] | 1898 | fi |
---|
[664] | 1899 | fi |
---|
[621] | 1900 | done |
---|
| 1901 | |
---|
| 1902 | EXECUTION="${HOST_MPIRUN_COMMAND} -f ./run_file" |
---|
| 1903 | |
---|
| 1904 | IGCM_sys_Chmod u+x run_file |
---|
| 1905 | if ( $DEBUG_sys ) ; then |
---|
| 1906 | echo "run_file contains : " |
---|
| 1907 | cat run_file |
---|
| 1908 | fi |
---|
| 1909 | |
---|
[664] | 1910 | else # Only one executable. launch it. |
---|
[621] | 1911 | |
---|
| 1912 | for comp in ${config_ListOfComponents[*]} ; do |
---|
| 1913 | |
---|
[664] | 1914 | eval ExeNameIn=\${config_Executable_${comp}[0]} |
---|
| 1915 | eval ExeNameOut=\${config_Executable_${comp}[1]} |
---|
[621] | 1916 | |
---|
[664] | 1917 | if ( [ "X${ExeNameOut}" != X\"\" ] && [ "X${ExeNameOut}" != "Xinca.dat" ] ) ; then |
---|
| 1918 | EXECUTION="time mpirun -np ${BATCH_NUM_PROC_TOT} ./${ExeNameOut}" |
---|
| 1919 | fi |
---|
[621] | 1920 | done |
---|
| 1921 | |
---|
[664] | 1922 | fi |
---|
[621] | 1923 | |
---|
[664] | 1924 | IGCM_debug_Print 1 "sys mercurex9 : execution command is " |
---|
| 1925 | IGCM_debug_Print 1 "$EXECUTION" |
---|
[621] | 1926 | |
---|
[664] | 1927 | IGCM_debug_PopStack "IGCM_sys_build_execution_scripts" |
---|
[621] | 1928 | |
---|
| 1929 | } |
---|
| 1930 | |
---|
[99] | 1931 | function IGCM_sys_build_run_file { |
---|
| 1932 | |
---|
[621] | 1933 | IGCM_debug_Print 3 " dummy function : IGCM_sys_build_run_file " |
---|
| 1934 | |
---|
[99] | 1935 | } |
---|
[651] | 1936 | |
---|
| 1937 | ############################################################ |
---|
| 1938 | # Check of space available on temporary filesytems |
---|
| 1939 | function IGCM_sys_check_quota { |
---|
| 1940 | IGCM_debug_PushStack "IGCM_sys_check_quota" |
---|
[664] | 1941 | |
---|
[651] | 1942 | if ( $DEBUG_sys ) ; then |
---|
| 1943 | echo "IGCM_sys_check_quota " |
---|
| 1944 | fi |
---|
| 1945 | # Limit of quota (in %) |
---|
[705] | 1946 | limit_quota=95 |
---|
[651] | 1947 | |
---|
[652] | 1948 | # Check of the volume (use of RshMaster waiting for ccc_quota command available on SX9 nodes) |
---|
[674] | 1949 | # volume_quota=$( IGCM_sys_RshMaster "/applications/ccc-tools/ccc_quota | grep ' scratch' | awk '{print \$2}'" ) |
---|
| 1950 | # volume_avail=$( IGCM_sys_RshMaster "/applications/ccc-tools/ccc_quota | grep ' scratch' | awk '{print \$3}'" ) |
---|
[651] | 1951 | |
---|
[674] | 1952 | volume_quota=$(quota -h | grep 'scratch' | awk '{print $2}') |
---|
| 1953 | volume_avail=$(quota -h | grep 'scratch' | awk '{print $3}') |
---|
[652] | 1954 | |
---|
[651] | 1955 | if ( [ ! X${volume_quota} = X ] && [ ! ${volume_quota} = "-" ] ) ; then |
---|
| 1956 | |
---|
[652] | 1957 | unit_quota=$( echo $volume_quota | awk '{print(substr($0, length($0), length($0)))}' ) |
---|
| 1958 | unit_avail=$( echo $volume_avail | awk '{print(substr($0, length($0), length($0)))}' ) |
---|
[651] | 1959 | |
---|
[696] | 1960 | if [ "${unit_quota}" = "*" ] ; then |
---|
| 1961 | IGCM_debug_Print 1 "Please, check your quota of volume on scratch" |
---|
| 1962 | IGCM_debug_Print 1 "More than 100% of your quota is used" |
---|
| 1963 | IGCM_debug_Print 1 "Use the ccc_quota command to check" |
---|
| 1964 | IGCM_debug_Print 1 "You must have more than 10% available to run" |
---|
| 1965 | IGCM_debug_Exit "Not enough space to run ! STOP HERE" |
---|
| 1966 | IGCM_debug_Verif_Exit |
---|
| 1967 | fi |
---|
| 1968 | |
---|
[652] | 1969 | temp_avail=${volume_avail%%${unit_avail}*} |
---|
| 1970 | temp_quota=${volume_quota%%${unit_quota}*} |
---|
[651] | 1971 | |
---|
| 1972 | if [ ! ${unit_avail} = ${unit_quota} ] ; then |
---|
| 1973 | |
---|
| 1974 | # Convertion |
---|
[652] | 1975 | if [ ${unit_avail} = "T" ] ; then |
---|
[651] | 1976 | (( temp_avail = temp_avail * 1000000000000 )) |
---|
[652] | 1977 | elif [ ${unit_avail} = "G" ] ; then |
---|
[651] | 1978 | (( temp_avail = temp_avail * 1000000000 )) |
---|
[652] | 1979 | elif [ ${unit_avail} = "M" ] ; then |
---|
[651] | 1980 | (( temp_avail = temp_avail * 1000000 )) |
---|
[652] | 1981 | elif [ ${unit_avail} = "k" ] ; then |
---|
[651] | 1982 | (( temp_avail = temp_avail * 1000 )) |
---|
| 1983 | else |
---|
| 1984 | (( temp_avail = volume_avail )) |
---|
| 1985 | fi |
---|
[652] | 1986 | if [ ${unit_quota} = "T" ] ; then |
---|
[651] | 1987 | (( temp_quota = temp_quota * 1000000000000 )) |
---|
[652] | 1988 | elif [ ${unit_quota} = "G" ] ; then |
---|
[651] | 1989 | (( temp_quota = temp_quota * 1000000000 )) |
---|
[652] | 1990 | elif [ ${unit_quota} = "M" ] ; then |
---|
[651] | 1991 | (( temp_quota = temp_quota * 1000000 )) |
---|
[652] | 1992 | elif [ ${unit_quota} = "k" ] ; then |
---|
[651] | 1993 | (( temp_quota = temp_quota * 1000 )) |
---|
| 1994 | else |
---|
| 1995 | (( temp_quota = volume_quota )) |
---|
| 1996 | fi |
---|
| 1997 | fi |
---|
| 1998 | |
---|
| 1999 | quota_volume=$(echo "scale=2 ; $temp_quota/$temp_avail*100" | bc) |
---|
| 2000 | # echo "volume ratio is " $quota_volume |
---|
| 2001 | |
---|
| 2002 | if [ ${quota_volume} -ge ${limit_quota} ] ; then |
---|
[652] | 2003 | IGCM_debug_Print 1 "Please, check your quota of volume on scratch" |
---|
[654] | 2004 | IGCM_debug_Print 1 "${quota_volume}% of your quota is used" |
---|
| 2005 | IGCM_debug_Print 1 "Use the ccc_quota command to check" |
---|
[651] | 2006 | IGCM_debug_Print 1 "You must have more than 10% available to run" |
---|
| 2007 | IGCM_debug_Exit "Not enough space to run ! STOP HERE" |
---|
| 2008 | IGCM_debug_Verif_Exit |
---|
| 2009 | fi |
---|
| 2010 | |
---|
| 2011 | fi |
---|
| 2012 | IGCM_debug_PopStack "IGCM_sys_check_quota" |
---|
| 2013 | } |
---|