#!/bin/ksh #************************************************************** # Author: Sebastien Denvil, Martial Mancip # Contact: Sebastien.Denvil__at__ipsl.jussieu.fr # $Revision:: $ Revision of last commit # $Author:: $ Author of last commit # $Date:: $ Date of last commit # IPSL (2006) # This software is governed by the CeCILL licence see libIGCM/libIGCM_CeCILL.LIC # #************************************************************** #========================================================= # The documentation of this file can be automatically generated # if you use the prefix #D- for comments to be extracted. # Extract with command: cat lib* | grep "^#D-" | cut -c "4-" #========================================================= #D-#================================================== #D-LibIGCM_sys for Mercure SX9 #D-#================================================== #D- #D- This ksh library if a layer under some usefull #D-environment variables and shell commands. #D-All those definitions depend on host particularities. #D-It manages a stack mechanism and test validity of operations. #D-All function described bellow must be prefixed by IGCM_sys. #==================================================== # libIGCM_sys PARAMETERS #==================================================== # gawk specific location on SX9 export PATH=/applications/gawk-3.0.4/bin:${PATH} #==================================================== # set DEBUG_sys to true to output calls of function typeset -r DEBUG_sys=${DEBUG_sys:=true} #==================================================== # Turn in dry run mode ? (sys_Put_Rest, sys_Put_Out, sys_Get) typeset -r DRYRUN=${DRYRUN:=0} # YOU MUST COMPILE YOUR EXE FILES FOR DRYRUN MODE ! # ------------------------------------------------------------------------------------- # | DRYRUN= | Date computations, | sys_Get | Exe | sys_Put_Out; sys_Put_Rest | # | | Cp/Exe param files | | Chmod | | # | | Qsub | | | | # ------------------------------------------------------------------------------------- # | 0 | yes | yes | yes | yes | # ------------------------------------------------------------------------------------- # | 1 | yes | yes | yes | no | # ------------------------------------------------------------------------------------- # | 2 | yes | yes | no | no | # ------------------------------------------------------------------------------------- # | 3 | yes | no | no | no | # ------------------------------------------------------------------------------------- #===================================================== # Global Variables : #===================================================== # Language : "fr" or "en" typeset -r MYLANG="fr" #===================================================== # Host and user names # $hostname ou hostname typeset HOST=${HOST:=$( hostname )} # $username ou whoami typeset LOGIN=${LOGIN:=$( whoami )} # $hostname of the MASTER job typeset -r MASTER=mercure #D- #D-#================================================== #D-Program used in libIGCM #D-#================================================== # Submit command typeset SUBMIT=${SUBMIT:=qsub} # rsync with path typeset -r RSYNC=/home/cont003/p86denv/SX_RSYNC/bin/rsync # RSYNC_opt args to rsync typeset -r RSYNC_opt="-va" # ie storage filesystem typeset -r STOREHOST=${MASTER} #==================================================== # Host specific DIRECTORIES #==================================================== # ============ CESIUM START ============ # #==================================================== #- Mirror libIGCM from mercure to cesium if needed #ROOTSYS=$( echo ${libIGCM} | gawk -F"/" '{print $3}' ) #if [ ! ${ROOTSYS} = "home" ] ; then # typeset -r MirrorlibIGCM=${MirrorlibIGCM:=true} #else # typeset -r MirrorlibIGCM=${MirrorlibIGCM:=false} #fi #==================================================== #- libIGCM_POST #if ( ${MirrorlibIGCM} ) ; then # PATHlibIGCM=$( echo ${libIGCM} | gawk -F"${LOGIN}/" '{print $2}' | sed -e "s&/libIGCM&&" ) # typeset -r libIGCM_POST=${HOME}/MIRROR/${PATHlibIGCM}/libIGCM #else # typeset -r libIGCM_POST=${libIGCM} #fi # ============ CESIUM END ============ # #==================================================== #- MirrorlibIGCM for frontend typeset -r MirrorlibIGCM=${MirrorlibIGCM:=false} #==================================================== #- libIGCM_POST for frontend typeset -r libIGCM_POST=${libIGCM} #==================================================== #- R_EXE (==> BIN_DIR = ${MODIPSL}/bin ) typeset -r R_EXE="${MODIPSL}/bin" #==================================================== #- SUBMIT_DIR : submission dir typeset SUBMIT_DIR=${SUBMIT_DIR:=${PBS_O_WORKDIR}} #==================================================== #- IN typeset -r R_IN=${R_IN:=/ccc/work/cont003/dsm/p86ipsl/IGCM} typeset -r R_IN_ECMWF=${R_IN_ECMWF:=/ccc/work/cont003/dsm/p24data} #==================================================== #- ARCHIVE (dedicated to large files) typeset ARCHIVE=${CCCSTOREDIR} #==================================================== #- STORAGE (dedicated to small/medium files) typeset STORAGE=${CCCWORKDIR} #==================================================== #- R_OUT typeset R_OUT=${ARCHIVE}/IGCM_OUT #==================================================== #- R_FIG (hosting figures : monitoring and atlas, and/or small files) typeset R_FIG=${STORAGE}/IGCM_OUT #==================================================== #- R_BUF (ONLY FOR double copy an scratch) typeset -r R_BUF=${SCRATCHDIR}/IGCM_OUT #==================================================== #- BIG_DIR : BIG_DIR to store files waiting for rebuild typeset -r BIG_DIR=${BIG_DIR:=${SCRATCHDIR}/REBUILD} #==================================================== #- OUT_POST typeset -r R_OUT_POST=${SCRATCHDIR}/IGCM_OUT #==================================================== #- RUN_DIR_PATH : Temporary working directory (=> TMP) typeset -r RUN_DIR_PATH=${RUN_DIR_PATH:=${LOCALTMPDIR}} #==================================================== #- HOST_MPIRUN_COMMAND typeset -r HOST_MPIRUN_COMMAND=${HOST_MPIRUN_COMMAND:="mpirun"} #==================================================== #- Max number of arguments passed to nco operator or demigration command UNIX_MAX_LIMIT=360 #==================================================== #- set PackDefault true on NEC SX9 PackDefault=true #==================================================== #- Default number of MPI task for IPSL coupled model #- required for backward compatibility #- DEFAULT_NUM_PROC_OCE=1 DEFAULT_NUM_PROC_CPL=1 (( DEFAULT_NUM_PROC_ATM = BATCH_NUM_PROC_TOT - 1 )) DEFAULT_NUM_PROC_TOTAL=${BATCH_NUM_PROC_TOT} #D-#================================================== #D-function IGCM_sys_ChangeArchive #D-* Purpose: if SpaceName=TEST everything is stored on SCRATCHDIR #D-* Examples: #D- function IGCM_sys_ChangeArchive { IGCM_debug_PushStack "IGCM_sys_ChangeArchive" ARCHIVE=${SCRATCHDIR} STORAGE=${SCRATCHDIR} R_OUT=${ARCHIVE}/IGCM_OUT R_FIG=${STORAGE}/IGCM_OUT IGCM_debug_Print 1 "ARCHIVE has been redefined = ${ARCHIVE}" IGCM_debug_Print 1 "STORAGE has been redefined = ${STORAGE}" IGCM_debug_Print 1 "R_OUT has been redefined = ${R_OUT}" IGCM_debug_Print 1 "R_FIG has been redefined = ${R_FIG}" IGCM_debug_PopStack "IGCM_sys_ChangeArchive" } #D-#================================================== #D-function IGCM_sys_RshMaster #D-* Purpose: Connection to frontend machine. #D-* Examples: #D- function IGCM_sys_RshMaster { IGCM_debug_PushStack "IGCM_sys_RshMaster" $@ ssh -t ${MASTER} /bin/ksh <<-EOF export libIGCM=${libIGCM} export DEBUG_debug=${DEBUG_debug} . ${libIGCM}/libIGCM_debug/libIGCM_debug.ksh . ${libIGCM}/libIGCM_card/libIGCM_card.ksh ${@} EOF if [ $? -gt 0 ] ; then echo "IGCM_sys_RshMaster : erreur." IGCM_debug_Exit "IGCM_sys_RshMaster" fi IGCM_debug_PopStack "IGCM_sys_RshMaster" } #D-#================================================== #D-function IGCM_sys_RshArchive #D-* Purpose: Archive rsh command #D-* Examples: #D- function IGCM_sys_RshArchive { IGCM_debug_PushStack "IGCM_sys_RshArchive" $@ /bin/ksh <<-EOF ${@} EOF if [ $? -gt 0 ] ; then echo "IGCM_sys_RshArchive : erreur." IGCM_debug_Exit "IGCM_sys_RshArchive" fi IGCM_debug_PopStack "IGCM_sys_RshArchive" } #D-#================================================== #D-function IGCM_sys_RshPost #D-* Purpose: Post-process rsh command #D-* Examples: #D- function IGCM_sys_RshPost { IGCM_debug_PushStack "IGCM_sys_RshPost" $@ if ( $DEBUG_sys ) ; then echo "IGCM_sys_RshPost :" $@ fi #echo cat tmp_IGCM_sys_RshPost_$$ INITIAL #cat tmp_IGCM_sys_RshPost_$$ # keep standard input (stdin) for the loop onto temporary file cat >tmp_IGCM_sys_RshPost_$$ # ============ FRONTEND START ============ # /bin/ksh job_end.mail Dear ${LOGIN}, Simulation ${config_UserChoices_JobName} is ${status} on supercomputer `hostname`. Job started : ${DateBegin} Job ended : ${DateEnd} Output files are available in ${R_SAVE} Files to be rebuild are temporarily available in ${REBUILD_DIR} Pre-packed files are temporarily available in ${R_BUFR} Script files, Script Outputs and Debug files (if necessary) are available in ${SUBMIT_DIR} END_MAIL if [ X"${config_UserChoices_MailName}" != X ] ; then mailx -s "${config_UserChoices_JobName} ${status}" ${config_UserChoices_MailName} < job_end.mail elif [ -f ~/.forward ] ; then mailx -s "${config_UserChoices_JobName} ${status}" $( cat ~/.forward ) < job_end.mail else mailx -s "${config_UserChoices_JobName} ${status}" ${LOGIN} < job_end.mail fi if [ $? -gt 0 ] ; then echo "IGCM_sys_SendMail : erreur." IGCM_debug_Exit "IGCM_sys_SendMail" fi IGCM_debug_PopStack "IGCM_sys_SendMail" } #D-#================================================== #D-function IGCM_sys_Mkdir #D-* Purpose: Master locale mkdir command #D-* Examples: #D- function IGCM_sys_Mkdir { IGCM_debug_PushStack "IGCM_sys_Mkdir" $@ if ( $DEBUG_sys ) ; then echo "IGCM_sys_Mkdir :" $@ fi typeset NB_ESSAI DELAI status i # number of tentative NB_ESSAI=3 # time delay between tentative DELAI=2 if [ ! -d ${1} ]; then i=0 while [ $i -lt $NB_ESSAI ] ; do \mkdir -p $1 status=$? if [ ${status} -gt 0 ] ; then IGCM_debug_Print 2 "IGCM_sys_Mkdir : mkdir failed error code ${status} ${i}/${NB_ESSAI}" IGCM_debug_Print 2 "IGCM_sys_Mkdir : sleep ${DELAI} seconds and try again." sleep $DELAI else break fi (( i = i + 1 )) done fi # vérification : if [ ! -d ${1} ] ; then echo "IGCM_sys_Mkdir : erreur." IGCM_debug_Exit "IGCM_sys_Mkdir" fi IGCM_debug_PopStack "IGCM_sys_Mkdir" } #D-#================================================== #D-function IGCM_sys_MkdirArchive #D-* Purpose: Mkdir on Archive #D-* Examples: #D- function IGCM_sys_MkdirArchive { IGCM_debug_PushStack "IGCM_sys_MkdirArchive" $@ if ( $DEBUG_sys ) ; then echo "IGCM_sys_MkdirArchive :" $@ fi typeset NB_ESSAI DELAI status i # number of tentative NB_ESSAI=3 # time delay between tentative DELAI=2 if [ ! -d ${1} ]; then i=0 while [ $i -lt $NB_ESSAI ] ; do \mkdir -p $1 status=$? if [ ${status} -gt 0 ] ; then IGCM_debug_Print 2 "IGCM_sys_MkdirArchive : mkdir failed error code ${status} ${i}/${NB_ESSAI}" IGCM_debug_Print 2 "IGCM_sys_MkdirArchive : sleep ${DELAI} seconds and try again." sleep $DELAI else break fi (( i = i + 1 )) done fi # vérification : if [ ! -d ${1} ] ; then echo "IGCM_sys_MkdirArchive : erreur." IGCM_debug_Exit "IGCM_sys_MkdirArchive" fi IGCM_debug_PopStack "IGCM_sys_MkdirArchive" } #D-#================================================== #D-function IGCM_sys_MkdirWork #D-* Purpose: Mkdir on Work #D-* Examples: #D- function IGCM_sys_MkdirWork { IGCM_debug_PushStack "IGCM_sys_MkdirWork" $@ if ( $DEBUG_sys ) ; then echo "IGCM_sys_MkdirWork :" $@ fi #- creation de repertoire sur le serveur fichier if [ ! -d ${1} ]; then \mkdir -p $1 if [ $? -gt 0 ] ; then echo "IGCM_sys_MkdirWork : erreur." IGCM_debug_Exit "IGCM_sys_MkdirWork" fi fi IGCM_debug_PopStack "IGCM_sys_MkdirWork" } #D-#================================================== #D-function IGCM_sys_Cd #D-* Purpose: master cd command #D-* Examples: #D- function IGCM_sys_Cd { IGCM_debug_PushStack "IGCM_sys_Cd" $@ if ( $DEBUG_sys ) ; then echo "IGCM_sys_Cd :" $@ fi \cd $1 if [ $? -gt 0 ] ; then echo "IGCM_sys_Cd : erreur." IGCM_debug_Exit "IGCM_sys_Cd" fi IGCM_debug_PopStack "IGCM_sys_Cd" } #D-#================================================== #D-function IGCM_sys_Chmod #D-* Purpose: Chmod #D-* Examples: #D- function IGCM_sys_Chmod { IGCM_debug_PushStack "IGCM_sys_Chmod" -- $@ if ( $DEBUG_sys ) ; then echo "IGCM_sys_Chmod :" $@ fi if [ $DRYRUN -le 1 ]; then \chmod $@ if [ $? -gt 0 ] ; then echo "IGCM_sys_Chmod : erreur." IGCM_debug_Exit "IGCM_sys_Chmod" fi else ( ${DEBUG_debug} ) && echo "DRYRUN mode = " $DRYRUN >> stack fi IGCM_debug_PopStack "IGCM_sys_Chmod" } #D-#================================================== #D-function IGCM_sys_FileSize #D-* Purpose: Filesize #D-* Examples: #D- function IGCM_sys_FileSize { IGCM_debug_PushStack "IGCM_sys_FileSize" $@ typeset sizeF set +A sizeF -- $( ls -la ${1} ) if [ $? -gt 0 ] ; then IGCM_debug_Exit "IGCM_sys_FileSize" fi eval ${2}=${sizeF[4]} IGCM_debug_PopStack "IGCM_sys_FileSize" } #D-#================================================== #D-function IGCM_sys_TestDir #D-* Purpose: Test Directory that must exists #D-* Examples: #D- function IGCM_sys_TestDir { IGCM_debug_PushStack "IGCM_sys_TestDir" $@ if ( $DEBUG_sys ) ; then echo "IGCM_sys_TestDir :" $@ fi typeset ExistFlag ExistFlag=$( [ -d $1 ] && echo 0 || echo 1 ) IGCM_debug_PopStack "IGCM_sys_TestDir" return ${ExistFlag} } #D-#================================================== #D-function IGCM_sys_TestDirArchive #D-* Purpose: Test Directory that must exists on Archive #D-* Examples: #D- function IGCM_sys_TestDirArchive { IGCM_debug_PushStack "IGCM_sys_TestDirArchive" $@ if ( $DEBUG_sys ) ; then echo "IGCM_sys_TestDirArchive :" $@ fi typeset ExistFlag ExistFlag=$( [ -d $1 ] && echo 0 || echo 1 ) IGCM_debug_PopStack "IGCM_sys_TestDirArchive" return ${ExistFlag} } #D-#================================================== #D-function IGCM_sys_IsFileArchived #D-* Purpose: Test file that must NOT EXISTS on Archive #D-* Examples: #D- function IGCM_sys_IsFileArchived { IGCM_debug_PushStack "IGCM_sys_IsFileArchived" $@ if ( $DEBUG_sys ) ; then echo "IGCM_sys_IsFileArchived :" $@ fi typeset IsArchivedFlag IsArchivedFlag=$( [ X$( echo $1 | grep ^\/ccc\/store ) != X ] && echo 0 || echo 1 ) IGCM_debug_PopStack "IGCM_sys_IsFileArchived" return ${IsArchivedFlag} } #D-#================================================== #D-function IGCM_sys_TestFileArchive #D-* Purpose: Test file that must NOT EXISTS on Archive #D-* Examples: #D- function IGCM_sys_TestFileArchive { IGCM_debug_PushStack "IGCM_sys_TestFileArchive" $@ typeset ExistFlag ExistFlag=$( [ -f $1 ] && echo 0 || echo 1 ) IGCM_debug_PopStack "IGCM_sys_TestFileArchive" return ${ExistFlag} } #D-#================================================== #D-function IGCM_sys_TestFileBuffer #D-* Purpose: Test file that must NOT EXISTS on Buffer #D-* Examples: #D- function IGCM_sys_TestFileBuffer { IGCM_debug_PushStack "IGCM_sys_TestFileBuffer" $@ typeset ExistFlag ExistFlag=$( [ -f $1 ] && echo 0 || echo 1 ) IGCM_debug_PopStack "IGCM_sys_TestFileBuffer" return ${ExistFlag} } #D-#================================================== #D-function IGCM_sys_CountFileArchive #D-* Purpose: Count files on Archive filesystem #D-* Examples: #D- function IGCM_sys_CountFileArchive { IGCM_debug_PushStack "IGCM_sys_CountFileArchive" $@ ls ${@} 2>/dev/null | wc -l if [ $? -gt 0 ] ; then echo "IGCM_sys_CountFileArchive : erreur." fi IGCM_debug_PopStack "IGCM_sys_CountFileArchive" } #D-#================================================== #D-function IGCM_sys_CountFileBuffer #D-* Purpose: Count files on Scratch filesystem #D-* Examples: #D- function IGCM_sys_CountFileBuffer { IGCM_debug_PushStack "IGCM_sys_CountFileBuffer" $@ ls ${@} 2>/dev/null | wc -l if [ $? -gt 0 ] ; then echo "IGCM_sys_CountFileBuffer : erreur." fi IGCM_debug_PopStack "IGCM_sys_CountFileBuffer" } #D-#================================================== #D-function IGCM_sys_Tree #D-* Purpose: Tree directories with files on ${ARCHIVE} #D-* Examples: IGCM_sys_Tree ${R_IN} ${R_OUT} #D- function IGCM_sys_Tree { IGCM_debug_PushStack "IGCM_sys_Tree" $@ if ( $DEBUG_sys ) ; then echo "IGCM_sys_Tree :" $@ fi \ls -lR ${@} IGCM_debug_PopStack "IGCM_sys_Tree" } #D-#================================================== #D-function IGCM_sys_Tar #D-* Purpose: master tar command #D-* Examples: #D- function IGCM_sys_Tar { IGCM_debug_PushStack "IGCM_sys_Tar" $@ if ( $DEBUG_sys ) ; then echo "IGCM_sys_Tar :" $@ fi IGCM_sys_RshMaster "\tar $@" if [ $? -gt 0 ] ; then echo "IGCM_sys_Tar : erreur." IGCM_debug_Exit "IGCM_sys_Tar" fi IGCM_debug_PopStack "IGCM_sys_Tar" } #D-#================================================== #D-function IGCM_sys_UnTar #D-* Purpose: master un-tar command #D-* Examples: #D- function IGCM_sys_UnTar { IGCM_debug_PushStack "IGCM_sys_UnTar" $@ if ( $DEBUG_sys ) ; then echo "IGCM_sys_UnTar :" $@ fi \tar xvf $1 if [ $? -gt 0 ] ; then echo "IGCM_sys_UnTar : erreur." IGCM_debug_Exit "IGCM_sys_UnTar" fi IGCM_debug_PopStack "IGCM_sys_UnTar" } #D-#================================================== #D-function IGCM_sys_Qsub #D-* Purpose: Qsub new job #D-* Examples: #D- function IGCM_sys_Qsub { IGCM_debug_PushStack "IGCM_sys_Qsub" $@ if ( $DEBUG_sys ) ; then echo "IGCM_sys_Qsub :" $@ fi /usr/bin/nqsII/qsub -o ${Script_Output} -N ${config_UserChoices_JobName}.${CumulPeriod} < $1 if [ $? -gt 0 ] ; then echo "IGCM_sys_Qsub : erreur -o ${Script_Output} -N ${config_UserChoices_JobName}.${CumulPeriod} $@." IGCM_debug_Exit "IGCM_sys_Qsub" fi IGCM_debug_PopStack "IGCM_sys_Qsub" } #D-#================================================== #D-function IGCM_sys_QsubPost #D-* Purpose: Qsub new job on scalaire #D-* Examples: #D- function IGCM_sys_QsubPost { IGCM_debug_PushStack "IGCM_sys_QsubPost" $@ if ( $DEBUG_sys ) ; then echo "IGCM_sys_QsubPost :" $@ fi # ============ FRONTEND START ============ # /usr/bin/nqsII/qsub -q scalaire -o ${POST_DIR}/${Script_Post_Output}.out ${libIGCM}/$1.job -v ${listVarEnv} # ============ FRONTEND END ============ # # ============ CESIUM START ============ # # typeset NB_ESSAI DELAI status i # # number of tentative # NB_ESSAI=10 # # time delay between tentative # DELAI=10 # (( i = 0 )) # while [ $i -lt $NB_ESSAI ] ; do # /usr/local/bin/ccc_msub -o ${POST_DIR}/${Script_Post_Output}.out -e ${POST_DIR}/${Script_Post_Output}.e.out -E "-v ${listVarEnv}" ${libIGCM_POST}/$1.job # status=$? # if [ ${status} -gt 0 ]; then # sleep $DELAI # else # break # fi # (( i = i + 1 )) # done # ============ CESIUM END ============ # if [ $? -gt 0 ] ; then echo "IGCM_sys_QsubPost : erreur " $@ IGCM_debug_Exit "IGCM_sys_QsubPost" fi IGCM_debug_PopStack "IGCM_sys_QsubPost" } #D-************************* #D- File transfer functions #D-************************* #D- #D-#================================================== #D-function IGCM_sys_Rsync_out #D-* Purpose: treat return val of rsync #D-* Examples: IGCM_sys_Rsync_out out_RET_rsync #D- Error values and explanations can depend on your system version. function IGCM_sys_Rsync_out { status=$1 if [ ! $status ] ; then echo "rsync error !" fi if [ $MYLANG = "fr" ]; then case $status in 0) return ;; 1) echo "Erreur de rsync ; RERR_SYNTAX : " echo "Erreur de syntaxe ou d'utilisation." return;; 2) echo "Erreur de rsync ; RERR_PROTOCOL : " echo "Incompatibilité de protocole." return;; 3) echo "Erreur de rsync ; RERR_FILESELECT 3" echo "Erreurs lors de la sélection des fichiers d'entrée sortie et" echo "répertoires" return;; 4) echo "Erreur de rsync ; RERR_UNSUPPORTED" echo "Action demandée non supportée : une tentative de manipulation de" echo "fichiers 64-bits sur une plate-forme qui ne les supporte pas a" echo "été faite ; ou une option qui est supportée par le client mais" echo "pas par le serveur a été spécifiée." return;; 10) echo "Erreur de rsync ; RERR_SOCKETIO" echo "Erreur dans le socket d'entrée sortie" return;; 11) echo "Erreur de rsync ; RERR_FILEIO" echo "Erreur d'entrée sortie fichier" return;; 12) echo "Erreur de rsync ; RERR_STREAMIO" echo "Erreur dans flux de donnée du protocole rsync" return;; 13) echo "Erreur de rsync ; RERR_MESSAGEIO" echo "Erreur avec les diagnostics du programme" return;; 14) echo "Erreur de rsync ; RERR_IPC" echo "Erreur dans le code IPC" return;; 20) echo "Erreur de rsync ; RERR_SIGNAL" echo "SIGUSR1 ou SIGINT reçu" return;; 21) echo "Erreur de rsync ; RERR_WAITCHILD" echo "Une erreur retournée par waitpid()" return;; 22) echo "Erreur de rsync ; RERR_MALLOC" echo "Erreur lors de l'allocation des tampons de mémoire de coeur" return;; 23) echo "" echo "Erreur fichier inexistant" return;; 30) echo "Erreur de rsync ; RERR_TIMEOUT" echo "Temps d'attente écoulé dans l'envoi/réception de données" return;; *) echo "Erreur de rsync : code de retour de rsync inconnu :" $status return;; esac elif [ $MYLANG = "en" ] ; then case $status in 0) return;; 1) echo "rsync error : Syntax or usage error " return;; 2) echo "rsync error : Protocol incompatibility " return;; 3) echo "rsync error : Errors selecting input/output files, dirs" return;; 4) echo "rsync error : Requested action not supported: an attempt" echo "was made to manipulate 64-bit files on a platform that cannot support" echo "them; or an option was specified that is supported by the client and" echo "not by the server." return;; 5) echo "rsync error : Error starting client-server protocol" return;; 10) echo "rsync error : Error in socket I/O " return;; 11) echo "rsync error : Error in file I/O " return;; 12) echo "rsync error : Error in rsync protocol data stream " return;; 13) echo "rsync error : Errors with program diagnostics " return;; 14) echo "rsync error : Error in IPC code " return;; 20) echo "rsync error : Received SIGUSR1 or SIGINT " return;; 21) echo "rsync error : Some error returned by waitpid() " return;; 22) echo "rsync error : Error allocating core memory buffers " return;; 23) echo "rsync error : Partial transfer due to error" return;; 24) echo "rsync error : Partial transfer due to vanished source files" return;; 30) echo "rsync error : Timeout in data send/receive " return;; *) echo "rsync error : return code of rsync unknown :" $status return;; esac else echo "unknown language $MYLANG." return fi } #D-#================================================== #D-function IGCM_sys_Miror_libIGCM #D-* Purpose: Mirror libIGCM PATH and lib to cesium #D-* Examples: #D- function IGCM_sys_Mirror_libIGCM { IGCM_debug_PushStack "IGCM_sys_Mirror_libIGCM" if ( $DEBUG_sys ) ; then echo "IGCM_sys_Mirror_libIGCM" fi typeset status DEST mkdir -p ${HOME}/MIRROR/${PATHlibIGCM} echo ${RSYNC} ${RSYNC_opt} ${libIGCM} ${HOME}/MIRROR/${PATHlibIGCM} > out_rsync 2>&1 ${RSYNC} ${RSYNC_opt} ${libIGCM} ${HOME}/MIRROR/${PATHlibIGCM} >> out_rsync 2>&1 status=$? if [ ${status} -gt 0 ] ; then echo "IGCM_sys_Mirror_libIGCM Warning : no libIGCM on cesium." cat out_rsync fi IGCM_debug_PopStack "IGCM_sys_Mirror_libIGCM" } #D-#================================================== #D-function IGCM_sys_Cp #D-* Purpose: generic cp #D-* Examples: #D- function IGCM_sys_Cp { IGCM_debug_PushStack "IGCM_sys_Cp" $@ if ( $DEBUG_sys ) ; then echo "IGCM_sys_Cp :" $@ fi typeset status echo cp $@ > out_rsync 2>&1 \cp $@ >> out_rsync 2>&1 status=$? if [ ${status} -gt 0 ] ; then echo "IGCM_sys_Cp : error code ${status}" cat out_rsync IGCM_debug_Exit "IGCM_sys_Cp" else \rm out_rsync fi IGCM_debug_PopStack "IGCM_sys_Cp" } #D-#================================================== #D-function IGCM_sys_Rm #D-* Purpose: generic rm #D-* Examples: #D- function IGCM_sys_Rm { IGCM_debug_PushStack "IGCM_sys_Rm" -- $@ if ( $DEBUG_sys ) ; then echo "IGCM_sys_Rm :" $@ fi typeset status echo rm $@ > out_rsync 2>&1 \rm $@ >> out_rsync 2>&1 status=$? if [ ${status} -gt 0 ] ; then echo "IGCM_sys_Rm : error code ${status}" cat out_rsync IGCM_debug_Exit "IGCM_sys_Rm" else \rm out_rsync fi IGCM_debug_PopStack "IGCM_sys_Rm" } #D-#================================================== #D-function IGCM_sys_Mv #D-* Purpose: generic move #D-* Examples: #D- function IGCM_sys_Mv { IGCM_debug_PushStack "IGCM_sys_Mv" $@ if ( $DEBUG_sys ) ; then echo "IGCM_sys_Mv :" $@ fi if [ $DRYRUN = 0 ]; then typeset status echo mv $@ > out_rsync 2>&1 \mv $@ >> out_rsync 2>&1 status=$? if [ ${status} -gt 0 ] ; then echo "IGCM_sys_Mv : error code ${status}" cat out_rsync IGCM_debug_Exit "IGCM_sys_Mv" else \rm out_rsync fi else ( ${DEBUG_debug} ) && echo "DRYRUN mode = " $DRYRUN >> stack fi IGCM_debug_PopStack "IGCM_sys_Mv" } #D-#================================================== #D-function IGCM_sys_Put_Dir #D-* Purpose: Copy a complete directory on $(ARCHIVE) #D-* Examples: #D- function IGCM_sys_Put_Dir { IGCM_debug_PushStack "IGCM_sys_Put_Dir" $@ if ( $DEBUG_sys ) ; then echo "IGCM_sys_Put_Dir :" $@ fi if [ $DRYRUN = 0 ]; then if [ ! -d ${1} ] ; then echo "WARNING : IGCM_sys_Put_Dir ${1} DOES NOT EXIST ." IGCM_debug_PopStack "IGCM_sys_Put_Dir" return fi typeset status # Only if we use rsync #IGCM_sys_TestDirArchive $( dirname $2 ) # #USUAL WAY \cp -r $1 $2 > out_rsync 2>&1 status=$? if [ ${status} -gt 0 ] ; then echo "IGCM_sys_Put_Dir : error code ${status}" cat out_rsync IGCM_debug_Exit "IGCM_sys_Put_Dir" else \rm out_rsync fi else ( ${DEBUG_debug} ) && echo "DRYRUN mode = " $DRYRUN >> stack fi IGCM_debug_PopStack "IGCM_sys_Put_Dir" } #D-#================================================== #D-function IGCM_sys_Get_Dir #D-* Purpose: Copy a complete directory from ${ARCHIVE} #D-* Examples: #D- function IGCM_sys_Get_Dir { IGCM_debug_PushStack "IGCM_sys_Get_Dir" $@ if ( $DEBUG_sys ) ; then echo "IGCM_sys_Get_Dir :" $@ fi if [ $DRYRUN = 0 ]; then # if [ ! -d ${1} ] ; then # echo "WARNING : IGCM_sys_Get_Dir ${1} DOES NOT EXIST ." # IGCM_debug_PopStack "IGCM_sys_Get_Dir" # return # fi typeset NB_ESSAI DELAI status i # number of tentative NB_ESSAI=3 # time delay between tentative DELAI=2 # Only if we use rsync #IGCM_sys_TestDirArchive $( dirname $2 ) # # USUAL WAY # add 'ccc_hsm get' (to demigrate all offline files) to reduce time of this command : ccc_hsm get -r $1 i=0 while [ $i -lt $NB_ESSAI ] ; do \cp -ur $1 $2 >> out_rsync 2>&1 status=$? if [ ${status} -gt 0 ]; then IGCM_debug_Print 2 "IGCM_sys_Get_Dir : cp failed error code ${status} ${i}/${NB_ESSAI}" IGCM_debug_Print 2 "IGCM_sys_Get_Dir : sleep ${DELAI} seconds and try again." sleep $DELAI else break fi (( i = i + 1 )) done if [ ${status} -gt 0 ] ; then echo "IGCM_sys_Get_Dir : error." cat out_rsync IGCM_debug_Exit "IGCM_sys_Get_Dir" else \rm out_rsync fi else ( ${DEBUG_debug} ) && echo "DRYRUN mode = " $DRYRUN >> stack fi IGCM_debug_PopStack "IGCM_sys_Get_Dir" } #==================================================== #- Call IGCM_sys_Mirror_libIGCM now ! if ( $MirrorlibIGCM ) ; then IGCM_sys_Mirror_libIGCM fi #D-#================================================== #D-function IGCM_sys_Put_Rest #D-* Purpose: Put computied restarts on ${ARCHIVE}. #D- File and target directory must exist. #D-* Examples: #D- function IGCM_sys_Put_Rest { IGCM_debug_PushStack "IGCM_sys_Put_Rest" $@ if ( $DEBUG_sys ) ; then echo "IGCM_sys_Put_Rest :" $@ fi if [ $DRYRUN = 0 ]; then if [ ! -f ${1} ] ; then echo "ERROR : IGCM_sys_Put_Rest ${1} DOES NOT EXIST ." IGCM_debug_Exit "IGCM_sys_Put_Rest" fi typeset status # if [ X${JobType} = XRUN ] ; then IGCM_sys_Chmod 444 ${1} fi # # USUAL WAY \cp $1 $2 > out_rsync 2>&1 status=$? # #RSYNC WITH NETWORK SSH CALL # echo ${RSYNC} ${RSYNC_opt} -e ssh ${RUN_DIR}/$1 ${STOREHOST}:${2} > out_rsync 2>&1 # ${RSYNC} ${RSYNC_opt} -e ssh ${RUN_DIR}/$1 ${STOREHOST}:${2} >> out_rsync 2>&1 # #RSYNC WITH NFS USE # echo ${RSYNC} ${RSYNC_opt} ${RUN_DIR}/$1 ${2} > out_rsync 2>&1 # ${RSYNC} ${RSYNC_opt} ${RUN_DIR}/$1 ${2} >> out_rsync 2>&1 # status=$? # IGCM_sys_Rsync_out $status # ${libIGCM}/libIGCM_sys/IGCM_analyse_rsync_out.awk out_rsync # (( status=status+$? )) if [ ${status} -gt 0 ] ; then echo "IGCM_sys_Put_Rest : cp failed error code ${status}" cat out_rsync IGCM_debug_Exit "IGCM_sys_Put_Rest" else \rm out_rsync fi else ( ${DEBUG_debug} ) && echo "DRYRUN mode = " $DRYRUN >> stack fi IGCM_debug_PopStack "IGCM_sys_Put_Rest" } #D-#================================================== #D-function IGCM_sys_PutBuffer_Rest #D-* Purpose: Put computied restarts on ${SCRATCHDIR}. #D- File and target directory must exist. #D-* Examples: #D- function IGCM_sys_PutBuffer_Rest { IGCM_debug_PushStack "IGCM_sys_PutBuffer_Rest" $@ if ( $DEBUG_sys ) ; then echo "IGCM_sys_PutBuffer_Rest :" $@ fi if [ $DRYRUN = 0 ]; then if [ ! -f ${1} ] ; then echo "ERROR : IGCM_sys_PutBuffer_Rest ${1} DOES NOT EXIST ." IGCM_debug_Exit "IGCM_sys_PutBuffer_Rest" fi typeset status # if [ X${JobType} = XRUN ] ; then IGCM_sys_Chmod 444 ${1} fi # # USUAL WAY \cp $1 $2 > out_rsync 2>&1 status=$? if [ ${status} -gt 0 ] ; then echo "IGCM_sys_PutBuffer_Rest : error code ${status}" cat out_rsync IGCM_debug_Exit "IGCM_sys_PutBuffer_Rest" else \rm out_rsync fi else ( ${DEBUG_debug} ) && echo "DRYRUN mode = " $DRYRUN >> stack fi IGCM_debug_PopStack "IGCM_sys_PutBuffer_Rest" } #D-#================================================== #D-function IGCM_sys_Put_Out #D-* Purpose: Copy a file on ${ARCHIVE} after having chmod it in readonly #D-* Examples: #D- function IGCM_sys_Put_Out { IGCM_debug_PushStack "IGCM_sys_Put_Out" $@ if ( $DEBUG_sys ) ; then echo "IGCM_sys_Put_Out :" $@ fi typeset NB_ESSAI DELAI status i exist skip # number of tentative NB_ESSAI=3 # time delay between tentative DELAI=2 if [ $DRYRUN = 0 ]; then if [ ! -f ${1} ] ; then echo "WARNING : IGCM_sys_Put_Out ${1} DOES NOT EXIST ." IGCM_debug_PopStack "IGCM_sys_Put_Out" return 1 fi # IGCM_sys_MkdirArchive $( dirname $2 ) # #===================================================== # COMMENT OUT DOUBLE COPY ON SCRATCHDIR #===================================================== #echo ${2} | grep "${R_OUT}" > /dev/null 2>&1 #if [ $? -eq 0 ] ; then # typeset WORKPATH FILEPATH # WORKPATH=$( dirname $2 | sed -e "s|${R_OUT}|${R_BUF}|" ) # IGCM_sys_MkdirWork ${WORKPATH} # FILEPATH=${WORKPATH}/$( basename $2 ) # # # IGCM_sys_Cp ${1} ${FILEPATH} #fi if [ X${JobType} = XRUN ] ; then if [ X${3} = X ] ; then IGCM_sys_Chmod 444 ${1} fi fi # exist=false skip=false if [ -f $2 ] ; then IGCM_debug_Print 1 "$2 already exist" #dmget $2 ccc_hsm get $2 exist=true if [ "X$( diff $1 $2 )" = X ] ; then IGCM_debug_Print 2 "$1 and $2 are the same file, we skip the copy" skip=true else IGCM_debug_Print 2 "$1 and $2 are not the same file, we force the copy" skip=false fi fi # if ( [ X${exist} = Xtrue ] && [ X${skip} = Xfalse ] ) ; then IGCM_sys_Chmod u+w $2 fi if [ X${skip} = Xfalse ] ; then i=0 while [ $i -lt $NB_ESSAI ] ; do # USUAL WAY \cp $1 $2 > out_rsync 2>&1 status=$? if [ ${status} -gt 0 ]; then IGCM_debug_Print 2 "IGCM_sys_Put_Out : cp failed error code ${status} ${i}/${NB_ESSAI}" IGCM_debug_Print 2 "IGCM_sys_Put_Out : sleep ${DELAI} seconds and try again." sleep $DELAI else break fi (( i = i + 1 )) done fi # #RSYNC WITH NETWORK SSH CALL # echo ${RSYNC} ${RSYNC_opt} -e ssh ${RUN_DIR}/$1 ${STOREHOST}:${2} > out_rsync 2>&1 # ${RSYNC} ${RSYNC_opt} -e ssh ${RUN_DIR}/$1 ${STOREHOST}:${2} >> out_rsync 2>&1 # #RSYNC WITH NFS USE # echo ${RSYNC} ${RSYNC_opt} ${RUN_DIR}/$1 ${2} > out_rsync 2>&1 # ${RSYNC} ${RSYNC_opt} ${RUN_DIR}/$1 ${2} >> out_rsync 2>&1 # status=$? # IGCM_sys_Rsync_out $status # ${libIGCM}/libIGCM_sys/IGCM_analyse_rsync_out.awk out_rsync # (( status=status+$? )) if [ ${status} -gt 0 ] ; then echo "IGCM_sys_Put_Out : error." cat out_rsync IGCM_debug_Exit "IGCM_sys_Put_Out" else \rm out_rsync fi else ( ${DEBUG_debug} ) && echo "DRYRUN mode = " $DRYRUN >> stack fi IGCM_debug_PopStack "IGCM_sys_Put_Out" return 0 } #D-#================================================== #D-function IGCM_sys_PutBuffer_Out #D-* Purpose: Copy a file on ${SCRATCHDIR} after having chmod it in readonly #D-* Examples: #D- function IGCM_sys_PutBuffer_Out { IGCM_debug_PushStack "IGCM_sys_PutBuffer_Out" $@ if ( $DEBUG_sys ) ; then echo "IGCM_sys_PutBuffer_Out :" $@ fi typeset NB_ESSAI DELAI status i exist skip # number of tentative NB_ESSAI=3 # time delay between tentative DELAI=2 if [ $DRYRUN = 0 ]; then if [ ! -f ${1} ] ; then echo "WARNING : IGCM_sys_PutBuffer_Out ${1} DOES NOT EXIST ." IGCM_debug_PopStack "IGCM_sys_PutBuffer_Out" return 1 fi # IGCM_sys_Mkdir $( dirname $2 ) # if [ X${JobType} = XRUN ] ; then if [ X${3} = X ] ; then IGCM_sys_Chmod 444 ${1} fi fi exist=false skip=false if [ -f $2 ] ; then IGCM_debug_Print 1 "$2 already exist" exist=true if [ "X$( diff $1 $2 )" = X ] ; then IGCM_debug_Print 2 "$1 and $2 are the same file, we skip the copy" skip=true else IGCM_debug_Print 2 "$1 and $2 are not the same file, we force the copy" skip=false fi fi # if ( [ X${exist} = Xtrue ] && [ X${skip} = Xfalse ] ) ; then IGCM_sys_Chmod u+w $2 fi if [ X${skip} = Xfalse ] ; then i=0 while [ $i -lt $NB_ESSAI ] ; do # USUAL WAY \cp $1 $2 > out_rsync 2>&1 status=$? if [ ${status} -gt 0 ]; then IGCM_debug_Print 2 "IGCM_sys_PutBuffer_Out : cp failed error code ${status} ${i}/${NB_ESSAI}" IGCM_debug_Print 2 "IGCM_sys_PutBuffer_Out : sleep ${DELAI} seconds and try again." sleep $DELAI else break fi (( i = i + 1 )) done fi if [ ${status} -gt 0 ] ; then echo "IGCM_sys_PutBuffer_Out : error." cat out_rsync IGCM_debug_Exit "IGCM_sys_PutBuffer_Out" else \rm out_rsync fi else ( ${DEBUG_debug} ) && echo "DRYRUN mode = " $DRYRUN >> stack fi IGCM_debug_PopStack "IGCM_sys_PutBuffer_Out" return 0 } #D-#================================================== #D-function IGCM_sys_Get #D-* Purpose: Get a file from ${ARCHIVE} #D-* Examples: IGCM_sys_Get myfile /destpath/myfile_with_PREFIX #D- IGCM_sys_Get /l Array_contain_myfiles /destpath/ function IGCM_sys_Get { IGCM_debug_PushStack "IGCM_sys_Get" $@ typeset DEST dm_liste ifile target file_work typeset NB_ESSAI DELAI status i if ( $DEBUG_sys ) ; then echo "IGCM_sys_Get :" $@ fi # number of tentative NB_ESSAI=3 # time delay between tentative DELAI=2 if [ $DRYRUN -le 2 ]; then if [ X${1} = X'/l' ] ; then # test if the first file is present in the old computation : eval set +A dm_liste \${${2}} else eval set +A dm_liste ${1} fi eval DEST=\${${#}} #===================================================== # COMMENT OUT DOUBLE COPY ON SCRATCHDIR #===================================================== # Is it an R_OUT file (not R_IN) ? #echo ${dm_liste[0]} | grep "${R_OUT}" > /dev/null 2>&1 #if [ $? -eq 0 ] ; then # # Yes ? then we try to get it in SCRATCHDIR # set +A file_work $( echo ${dm_liste[*]} | sed -e "s|${R_OUT}|${R_BUF}|g" ) # if [ -f ${file_work[0]} ] ; then # IGCM_sys_Cp ${file_work[*]} ${DEST} # IGCM_debug_PopStack "IGCM_sys_Get" # return # fi #fi ccc_hsm get ${dm_liste[*]} > out_rsync 2>&1 status=$? if [ ${status} -gt 0 ] ; then echo "WARNING IGCM_sys_Get : error code ${status}" cat out_rsync echo "WARNING IGCM_sys_Get : will stop later if the cp fails." fi #if [ ${status} -gt 0 ] ; then # if [ ! "X$( grep "Lost dmusrcmd connection" out_rsync )" = "X" ] ; then # cat out_rsync # echo "WARNING IGCM_sys_Get : Lost dmusrcmd connection : " # sleep 30 # echo "We try another time" ## dmget ${dm_liste[*]} > out_rsync 2>&1 # ccc_hsm get ${dm_liste[*]} > out_rsync 2>&1 # status=$? # if [ ${status} -gt 0 ] ; then # echo "ERROR IGCM_sys_Get : again demigration error :" # cat out_rsync # IGCM_debug_Exit "IGCM_sys_Get" # fi # else # echo "ERROR IGCM_sys_Get : demigration error :" # cat out_rsync # IGCM_debug_Exit "IGCM_sys_Get" # fi #fi # #RSYNC WITH NETWORK SSH CALL # echo ${RSYNC} ${RSYNC_opt} -e ssh ${STOREHOST}:"${dm_liste}" ${STOREHOST}:${RUN_DIR}/${DEST} > out_rsync 2>&1 # ${RSYNC} ${RSYNC_opt} -e ssh ${STOREHOST}:"${dm_liste}" ${STOREHOST}:${RUN_DIR}/${DEST} >> out_rsync 2>&1 # #RSYNC WITH NFS USE # echo ${RSYNC} ${RSYNC_opt} ${dm_liste} ${RUN_DIR}/${DEST} > out_rsync 2>&1 # ${RSYNC} ${RSYNC_opt} ${dm_liste} ${RUN_DIR}/${DEST} >> out_rsync 2>&1 # status=$? # IGCM_sys_Rsync_out $status # ${libIGCM}/libIGCM_sys/IGCM_analyse_rsync_out.awk out_rsync # (( status=status+$? )) #USUAL WAY if [ X${1} = X'/l' ] ; then for target in ${dm_liste[*]} ; do local_file=$( basename ${target} ) # test if the target file is present before the loop IGCM_sys_TestFileArchive ${target} status=$? if [ ${status} -gt 0 ] ; then echo "IGCM_sys_Get, ERROR : regular file ${target} DOES NOT EXIST ." IGCM_debug_Exit "IGCM_sys_Get" else i=0 while [ $i -lt $NB_ESSAI ] ; do \cp ${target} ${DEST}/${local_file} >> out_rsync 2>&1 status=$? if [ ${status} -gt 0 ]; then IGCM_debug_Print 2 "IGCM_sys_Get : cp failed error code ${status} ${i}/${NB_ESSAI}" IGCM_debug_Print 2 "IGCM_sys_Get : sleep ${DELAI} seconds and try again." sleep $DELAI else break fi (( i = i + 1 )) done if [ ${status} -gt 0 ] ; then echo "IGCM_sys_Get : error" cat out_rsync \rm out_rsync IGCM_debug_Exit "IGCM_sys_Get" else \rm out_rsync fi fi done else i=0 while [ $i -lt $NB_ESSAI ] ; do \cp ${dm_liste} ${DEST} >> out_rsync 2>&1 status=$? if [ ${status} -gt 0 ]; then IGCM_debug_Print 2 "IGCM_sys_Get : cp failed error code ${status} ${i}/${NB_ESSAI}" IGCM_debug_Print 2 "IGCM_sys_Get : sleep ${DELAI} seconds and try again." sleep $DELAI else break fi (( i = i + 1 )) done if [ ${status} -gt 0 ] ; then echo "IGCM_sys_Get : error" cat out_rsync \rm out_rsync IGCM_debug_Exit "IGCM_sys_Get" else \rm out_rsync fi fi else ( ${DEBUG_debug} ) && echo "DRYRUN mode = " $DRYRUN >> stack fi IGCM_debug_PopStack "IGCM_sys_Get" } #D-#================================================== #D-function IGCM_sys_GetBuffer #D-* Purpose: Get a file from ${SCRATCHDIR} #D-* Examples: IGCM_sys_GetBuffer myfile /destpath/myfile_with_PREFIX #D- IGCM_sys_GetBuffer /l Array_contain_myfiles /destpath/ function IGCM_sys_GetBuffer { IGCM_debug_PushStack "IGCM_sys_GetBuffer" $@ typeset DEST buf_liste ifile target file_work typeset NB_ESSAI DELAI status i if ( $DEBUG_sys ) ; then echo "IGCM_sys_GetBuffer :" $@ fi # number of tentative NB_ESSAI=3 # time delay between tentative DELAI=2 if [ $DRYRUN -le 2 ]; then if [ X${1} = X'/l' ] ; then # test if the first file is present in the old computation : eval set +A buf_liste \${${2}} else eval set +A buf_liste ${1} fi eval DEST=\${${#}} #USUAL WAY if [ X${1} = X'/l' ] ; then for target in ${buf_liste[*]} ; do local_file=$( basename ${target} ) i=0 while [ $i -lt $NB_ESSAI ] ; do \cp ${target} ${DEST}/${local_file} >> out_rsync 2>&1 status=$? if [ ${status} -gt 0 ]; then IGCM_debug_Print 2 "IGCM_sys_GetBuffer : cp failed error code ${status} ${i}/${NB_ESSAI}" IGCM_debug_Print 2 "IGCM_sys_GetBuffer : sleep ${DELAI} seconds and try again." sleep $DELAI else break fi (( i = i + 1 )) done if [ ${status} -gt 0 ] ; then echo "IGCM_sys_Get : error" cat out_rsync \rm out_rsync IGCM_debug_Exit "IGCM_sys_GetBuffer" else \rm out_rsync fi done else i=0 while [ $i -lt $NB_ESSAI ] ; do \cp ${buf_liste} ${DEST} >> out_rsync 2>&1 status=$? if [ ${status} -gt 0 ]; then IGCM_debug_Print 2 "IGCM_sys_GetBuffer : cp failed error code ${status} ${i}/${NB_ESSAI}" IGCM_debug_Print 2 "IGCM_sys_GetBuffer : sleep ${DELAI} seconds and try again." sleep $DELAI else break fi (( i = i + 1 )) done if [ ${status} -gt 0 ] ; then echo "IGCM_sys_Get : error" cat out_rsync \rm out_rsync IGCM_debug_Exit "IGCM_sys_GetBuffer" else \rm out_rsync fi fi else ( ${DEBUG_debug} ) && echo "DRYRUN mode = " $DRYRUN >> stack fi IGCM_debug_PopStack "IGCM_sys_GetBuffer" } #D-#================================================== #D-function IGCM_sys_GetDate_FichWork #D-* Purpose: donne la date filesys d'un fichier sur le filesystem WORK #D-* Examples: #D- function IGCM_sys_GetDate_FichWork { IGCM_debug_PushStack "IGCM_sys_FichWork" $@ if ( $DEBUG_sys ) ; then echo "IGCM_sys_GetDate_FichWork :" $@ fi typeset dateF set +A dateF -- $( IGCM_sys_RshMaster "ls -l --full-time --time-style='+%Y%m%d%H%M%S' ${1}" ) eval ${2}=${dateF[5]} # donne la date filesys d'un fichier sur la machine work IGCM_debug_PopStack "IGCM_sys_FichWork" } #D-#================================================== #D-function IGCM_sys_GetDate_FichArchive #D-* Purpose: donne la date filesys d'un fichier sur le filesystem ARCHIVE #D-* Examples: #D- function IGCM_sys_GetDate_FichArchive { IGCM_debug_PushStack "IGCM_sys_FichArchive" $@ if ( $DEBUG_sys ) ; then echo "IGCM_sys_GetDate_FichArchive :" $@ fi typeset dateF set +A dateF -- $( IGCM_sys_RshMaster "ls -l --full-time --time-style='+%Y%m%d%H%M%S' ${1}" ) eval ${2}=${dateF[5]} IGCM_debug_PopStack "IGCM_sys_FichArchive" } ############################################################## # REBUILD OPERATOR function IGCM_sys_rebuild { IGCM_debug_PushStack "IGCM_sys_rebuild" -- $@ if ( $DEBUG_sys ) ; then echo "IGCM_sys_rebuild :" $@ fi typeset NB_ESSAI DELAI status i firstArg # number of tentative NB_ESSAI=3 # time delay between tentative DELAI=2 i=0 while [ $i -lt $NB_ESSAI ] ; do /home/cont003/p86ipsl/SX8/bin/rebuild -f -o $@ > out_rsync 2>&1 status=$? if [ ${status} -gt 0 ] ; then IGCM_debug_Print 2 "IGCM_sys_rebuild : error code ${status}" cat out_rsync \rm out_rsync IGCM_debug_Print 2 "IGCM_sys_rebuild : ${i}/${NB_ESSAI} sleep ${DELAI} seconds and try again." firstArg=${1} \rm ${firstArg} sleep $DELAI else \rm out_rsync break fi (( i = i + 1 )) done if [ ${status} -gt 0 ] ; then echo "IGCM_sys_rebuild : rebuild error" IGCM_debug_Exit "rebuild" fi IGCM_debug_PopStack "IGCM_sys_rebuild" } function IGCM_sys_rebuild_station { IGCM_debug_PushStack "IGCM_sys_rebuild_station" -- $@ typeset i list_opt file_in file_out prefix_invert list_invert if ( $DEBUG_sys ) ; then echo "IGCM_sys_rebuild_station :" $@ fi list_opt=$@ # Invert Axis : t,x -> x,t # t,pres,x -> x,t,pres # So that we can concatenate along x i=0 for file_in in ${list_opt} ; do (( i = i + 1)) [ ${i} = 1 ] && file_out=${file_in} && continue prefix_invert=$( basename ${file_in} .nc ) IGCM_sys_ncpdq -a x,time_counter -a x,time_counter,presnivs ${file_in} ${prefix_invert}_xt.nc list_invert[${#list_invert[*]}]=${prefix_invert}_xt.nc done # Concatenate IGCM_sys_ncrcat ${list_invert[*]} histstn_xt.nc # Re-ivert file IGCM_sys_ncpdq -a time_counter,x -a time_counter,presnivs,x histstn_xt.nc ${file_out} # Station re-ordering is too expansive to be run within libICGM # This is due to (ncpdq - nrcat - ncpdq) I/O sequence. # This re-ordering must be done "in memory" by the cmorization process # Anyway this is the best sequence using (ncpdq - nrcat - ncpdq) # BEGIN reordering # Only LMDZ text output contains the exact ordering of the station. # We isolate this in the code below: # 0 38 -157.5000000000000 70.98591549295774 # 0 54 27.49999999999999 67.18309859154928 # 0 56 -62.50000000000001 82.39436619718309 # 0 79 12.49999999999999 78.59154929577466 # 0 116 -165.0000000000000 76.05633802816901 # 0 117 130.0000000000000 70.98591549295774 # 0 118 110.0000000000000 87.46478873239437 # 1 40 4.999999999999995 51.97183098591550 # typeset iStation iProc list_opt file_in file_out prefix_invert # typeset -Z4 j4 # typeset -Z3 j3 # unset list_opt # set +A list_opt $@ # Filename after rebuild # file_out=${list_opt[0]} # Prefix of output files # prefix_invert=$( basename ${file_out} .nc ) # Number of procs # num_proc=$( grep -i mpi_size ${PREFIX}_${Exe_Output} | wc -l ) # iProc=0 # while [ ${iProc} -lt ${num_proc} ] ; do # Array containing Station as a number # unset proc_stn # set +A proc_stn $( grep "iophy_mpi rank ip lon lat $iProc" ${PREFIX}_${Exe_Output} | sed -e "s/iophy_mpi rank ip lon lat //g" | awk ' {print $2}' ) # Number of stations produced by processor proc # stationLast=${#proc_stn[*]} # Proc number on 4 digits # j4=${iProc} # Init # iStation=0 # while [ ${iStation} -lt ${stationLast} ] ; do # Station number on 3 digits # j3=${proc_stn[${iStation}]} # Extract station # Invert Axis : t,x -> x,t # t,pres,x -> x,t,pres # So that we can concatenate along x # IGCM_sys_ncpdq -a x,time_counter -a x,time_counter,presnivs -d x,$iStation,$iStation ${prefix_invert}_${j4}.nc ${prefix_invert}_stn_${j3}.nc # (( iStation = iStation + 1 )) # done # (( iProc = iProc + 1 )) # done # Concatenate all station along x # IGCM_sys_ncrcat ${prefix_invert}_stn_???.nc ${prefix_invert}_xt.nc # Re-invert file # IGCM_sys_ncpdq -a time_counter,x -a time_counter,presnivs,x ${prefix_invert}_xt.nc ${file_out} # END reordering IGCM_debug_PopStack "IGCM_sys_rebuild_station" } ############################################################ # Activate Running Environnment Variables function IGCM_sys_activ_variables { IGCM_debug_PushStack "IGCM_sys_activ_variables" if ( $DEBUG_sys ) ; then echo "IGCM_sys_activ_variables" fi # -------------------------------------------------------------------- #D- MPI specifications # -------------------------------------------------------------------- #D-- MPISUSPEND export MPISUSPEND=${MPISUSPEND:=OFF} #D-- MPIPROGINF #other choices : ALL_DETAIL2 export MPIPROGINF=ALL #D- activate ftrace (with -ftrace) export F_FTRACE=YES #D- communication information (with -ftrace) export MPICOMMINF=DETAIL # -------------------------------------------------------------------- #D- Other specifications # -------------------------------------------------------------------- #D- max number of character/line in output job export F_SYSLEN=5000 #D- number of error that can be admitted on the NEC export F_ERRCNT=0 #D- global performance export F_PROGINF=DETAIL #D- I/O performance (FORTRAN I/O only not netCDF) export F_FILEINF=${F_FILEINF:=NO} #D- netCDF I/O performance export NC_FILEINF=${NC_FILEINF:=NO} IGCM_debug_PopStack "IGCM_sys_activ_variables" } ############################################################ # Desactivate Running Environnment Variables function IGCM_sys_desactiv_variables { IGCM_debug_PushStack "IGCM_sys_desactiv_variables" if ( $DEBUG_sys ) ; then echo "IGCM_sys_desactiv_variables" fi # -------------------------------------------------------------------- #D- MPI specifications # -------------------------------------------------------------------- #D-- MPIPROGINF export MPIPROGINF=NO # -------------------------------------------------------------------- #D- Other specifications # -------------------------------------------------------------------- #D- global performance export F_PROGINF=NO IGCM_debug_PopStack "IGCM_sys_desactiv_variables" } ############################################################ # Build MPI/OMP scripts function IGCM_sys_build_execution_scripts { IGCM_debug_PushStack "IGCM_sys_build_execution_scripts" $@ if ( $DEBUG_sys ) ; then echo "IGCM_sys_build_execution_scripts " $@ fi typeset NbNodes_Job NbProc_Job comp_proc_mpi_loc comp_proc_omp_loc mpi_count if [ ! -f ${SUBMIT_DIR}/Job_${config_UserChoices_JobName} ] ; then IGCM_debug_Exit "IGCM_sys_mercurex9 build_execution_scripts : Job_${config_UserChoices_JobName} don't exist in SUBMIT_DIR : ${SUBMIT_DIR} " fi if ( ${OK_PARA_MPMD} ) ; then if [ -f run_file ] ; then IGCM_sys_Rm -f run_file fi touch run_file if ( ${OK_PARA_OMP} ) ; then IGCM_debug_Print 2 "Error in config.card on SX9 : OpenMP not available" exit 1 else # OLD : #PBS -v BATCH_NUM_PROC_TOT=4 #PBS -l cpunum_job=${BATCH_NUM_PROC_TOT} echo "Job_${config_UserChoices_JobName} includes BATCH_NUM_PROC_TOT = \c" cat ${SUBMIT_DIR}/Job_${config_UserChoices_JobName} | grep -- "-v *BATCH_NUM_PROC_TOT" | sed -e "s/.*BATCH_NUM_PROC_TOT *= *//" NbProc_Job=$( cat ${SUBMIT_DIR}/Job_${config_UserChoices_JobName} | grep -- "-v *BATCH_NUM_PROC_TOT" | sed -e "s/.*BATCH_NUM_PROC_TOT *= *//" ) NbProc_Job=${NbProc_Job:=0} if [ ${NbProc_Job} -eq 0 ] ; then IGCM_debug_Print 2 "Error in Job_${config_UserChoices_JobName} ressources : no BATCH_NUM_PROC_TOT defined with MPI only run." exit 1 fi fi # run_file construction # Then first loop on the components for the coupler ie oasis ### the coupler ie oasis must be the first one for comp in ${config_ListOfComponents[*]} ; do eval ExeNameIn=\${config_Executable_${comp}[0]} eval ExeNameOut=\${config_Executable_${comp}[1]} # for CPL component only if [ "X${comp}" = "XCPL" ] ; then eval comp_proc_mpi_loc=\${${comp}_PROC_MPI} eval comp_proc_omp_loc=\${${comp}_PROC_OMP} if ( ${OK_PARA_MPI} ) ; then echo "-p ${comp_proc_mpi_loc} -e ./${ExeNameOut}" >> run_file fi fi done # Then second loop on the components for comp in ${config_ListOfComponents[*]} ; do eval ExeNameIn=\${config_Executable_${comp}[0]} eval ExeNameOut=\${config_Executable_${comp}[1]} # Only if we really have an executable for the component and not the coupler ie oasis: if ( [ "X${ExeNameOut}" != X\"\" ] && [ "X${comp}" != "XCPL" ] ) ; then eval comp_proc_mpi_loc=\${${comp}_PROC_MPI} eval comp_proc_omp_loc=\${${comp}_PROC_OMP} if ( ${OK_PARA_MPI} ) ; then echo "-p ${comp_proc_mpi_loc} -e ./${ExeNameOut}" >> run_file fi fi done EXECUTION="${HOST_MPIRUN_COMMAND} -f ./run_file" IGCM_sys_Chmod u+x run_file if ( $DEBUG_sys ) ; then echo "run_file contains : " cat run_file fi else # Only one executable. launch it. for comp in ${config_ListOfComponents[*]} ; do eval ExeNameIn=\${config_Executable_${comp}[0]} eval ExeNameOut=\${config_Executable_${comp}[1]} if ( [ "X${ExeNameOut}" != X\"\" ] && [ "X${ExeNameOut}" != "Xinca.dat" ] ) ; then EXECUTION="time mpirun -np ${BATCH_NUM_PROC_TOT} ./${ExeNameOut}" fi done fi IGCM_debug_Print 1 "sys mercurex9 : execution command is " IGCM_debug_Print 1 "$EXECUTION" IGCM_debug_PopStack "IGCM_sys_build_execution_scripts" } function IGCM_sys_build_run_file { IGCM_debug_Print 3 " dummy function : IGCM_sys_build_run_file " } ############################################################ # Check of space available on temporary filesytems function IGCM_sys_check_quota { IGCM_debug_PushStack "IGCM_sys_check_quota" if ( $DEBUG_sys ) ; then echo "IGCM_sys_check_quota " fi # Limit of quota (in %) limit_quota=95 # Check of the volume (use of RshMaster waiting for ccc_quota command available on SX9 nodes) # volume_quota=$( IGCM_sys_RshMaster "/applications/ccc-tools/ccc_quota | grep ' scratch' | awk '{print \$2}'" ) # volume_avail=$( IGCM_sys_RshMaster "/applications/ccc-tools/ccc_quota | grep ' scratch' | awk '{print \$3}'" ) volume_quota=$(quota -h | grep 'scratch' | awk '{print $2}') volume_avail=$(quota -h | grep 'scratch' | awk '{print $3}') if ( [ ! X${volume_quota} = X ] && [ ! ${volume_quota} = "-" ] ) ; then unit_quota=$( echo $volume_quota | awk '{print(substr($0, length($0), length($0)))}' ) unit_avail=$( echo $volume_avail | awk '{print(substr($0, length($0), length($0)))}' ) if [ "${unit_quota}" = "*" ] ; then IGCM_debug_Print 1 "Please, check your quota of volume on scratch" IGCM_debug_Print 1 "More than 100% of your quota is used" IGCM_debug_Print 1 "Use the ccc_quota command to check" IGCM_debug_Print 1 "You must have more than 10% available to run" IGCM_debug_Exit "Not enough space to run ! STOP HERE" IGCM_debug_Verif_Exit fi temp_avail=${volume_avail%%${unit_avail}*} temp_quota=${volume_quota%%${unit_quota}*} if [ ! ${unit_avail} = ${unit_quota} ] ; then # Convertion if [ ${unit_avail} = "T" ] ; then (( temp_avail = temp_avail * 1000000000000 )) elif [ ${unit_avail} = "G" ] ; then (( temp_avail = temp_avail * 1000000000 )) elif [ ${unit_avail} = "M" ] ; then (( temp_avail = temp_avail * 1000000 )) elif [ ${unit_avail} = "k" ] ; then (( temp_avail = temp_avail * 1000 )) else (( temp_avail = volume_avail )) fi if [ ${unit_quota} = "T" ] ; then (( temp_quota = temp_quota * 1000000000000 )) elif [ ${unit_quota} = "G" ] ; then (( temp_quota = temp_quota * 1000000000 )) elif [ ${unit_quota} = "M" ] ; then (( temp_quota = temp_quota * 1000000 )) elif [ ${unit_quota} = "k" ] ; then (( temp_quota = temp_quota * 1000 )) else (( temp_quota = volume_quota )) fi fi quota_volume=$(echo "scale=2 ; $temp_quota/$temp_avail*100" | bc) # echo "volume ratio is " $quota_volume if [ ${quota_volume} -ge ${limit_quota} ] ; then IGCM_debug_Print 1 "Please, check your quota of volume on scratch" IGCM_debug_Print 1 "${quota_volume}% of your quota is used" IGCM_debug_Print 1 "Use the ccc_quota command to check" IGCM_debug_Print 1 "You must have more than 10% available to run" IGCM_debug_Exit "Not enough space to run ! STOP HERE" IGCM_debug_Verif_Exit fi fi IGCM_debug_PopStack "IGCM_sys_check_quota" }