[657] | 1 | #!/bin/ksh |
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[16] | 2 | |
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| 3 | #************************************************************** |
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| 4 | # Author: Sebastien Denvil, Martial Mancip, Christian Laguerre |
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[373] | 5 | # Contact: Martial.Mancip__at__ipsl.jussieu.fr |
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| 6 | # $Revision:: $ Revision of last commit |
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| 7 | # $Author:: $ Author of last commit |
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| 8 | # $Date:: $ Date of last commit |
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[16] | 9 | # IPSL (2006) |
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| 10 | # This software is governed by the CeCILL licence see libIGCM/libIGCM_CeCILL.LIC |
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[657] | 11 | # |
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[16] | 12 | #************************************************************** |
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| 13 | |
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| 14 | #========================================================= |
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| 15 | # The documentation of this file can be automatically generated |
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[657] | 16 | # if you use the prefix #D- for comments to be extracted. |
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[16] | 17 | # Extract with command: cat lib* | grep "^#D-" | cut -c "4-" |
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| 18 | #========================================================= |
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| 19 | |
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| 20 | #D-#================================================== |
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| 21 | #D-LibIGCM_sys for obelix |
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| 22 | #D-#================================================== |
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| 23 | #D- |
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[657] | 24 | #D- This ksh library if a layer under some usefull |
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[16] | 25 | #D-environment variables and shell commands. |
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| 26 | #D-All those definitions depend on host particularities. |
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| 27 | #D-It manages a stack mechanism and test validity of operations. |
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| 28 | #D-All function described bellow must be prefixed by IGCM_sys. |
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| 29 | |
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| 30 | #==================================================== |
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| 31 | # libIGCM_sys PARAMETERS |
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| 32 | #==================================================== |
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| 33 | |
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[343] | 34 | #==================================================== |
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[16] | 35 | # set DEBUG_sys to true to output calls of function |
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| 36 | typeset -r DEBUG_sys=${DEBUG_sys:=true} |
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| 37 | |
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[343] | 38 | #==================================================== |
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[16] | 39 | # Turn in dry run mode ? (sys_Put_Rest, sys_Put_Out, sys_Get) |
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| 40 | typeset -r DRYRUN=${DRYRUN:=0} |
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| 41 | |
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| 42 | # YOU MUST COMPILE YOUR EXE FILES FOR DRYRUN MODE ! |
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| 43 | # ------------------------------------------------------------------------------------- |
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| 44 | # | DRYRUN= | Date computations, | sys_Get | Exe | sys_Put_Out; sys_Put_Rest | |
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| 45 | # | | Cp/Exe param files | | Chmod | | |
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| 46 | # | | Qsub | | | | |
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| 47 | # ------------------------------------------------------------------------------------- |
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| 48 | # | 0 | yes | yes | yes | yes | |
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| 49 | # ------------------------------------------------------------------------------------- |
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| 50 | # | 1 | yes | yes | yes | no | |
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| 51 | # ------------------------------------------------------------------------------------- |
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| 52 | # | 2 | yes | yes | no | no | |
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| 53 | # ------------------------------------------------------------------------------------- |
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| 54 | # | 3 | yes | no | no | no | |
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| 55 | # ------------------------------------------------------------------------------------- |
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| 56 | |
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| 57 | #===================================================== |
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| 58 | # Global Variables : |
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| 59 | #===================================================== |
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| 60 | # Language : "fr" or "en" |
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| 61 | typeset -r MYLANG="fr" |
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| 62 | |
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| 63 | #===================================================== |
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[657] | 64 | # Host and user names |
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[217] | 65 | # $hostname ou hostname |
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[800] | 66 | typeset HOST=${HOST:=$( hostname )} |
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[16] | 67 | # $username ou whoami |
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[800] | 68 | typeset LOGIN=${LOGIN:=$( whoami )} |
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[657] | 69 | # $hostname of the MASTER job |
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[742] | 70 | typeset MASTER=${MASTER:=$( hostname )} |
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[16] | 71 | |
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| 72 | #D- |
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| 73 | #D-#================================================== |
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| 74 | #D-Program used in libIGCM |
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| 75 | #D-#================================================== |
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| 76 | |
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[742] | 77 | # Submit command |
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| 78 | typeset SUBMIT=${SUBMIT:=qsub} |
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[16] | 79 | # rsync with path |
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| 80 | typeset -r RSYNC=/usr/bin/rsync |
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| 81 | # RSYNC_opt args to rsync |
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[282] | 82 | typeset -r RSYNC_opt="-va" |
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[657] | 83 | # ie storage filesystem |
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| 84 | typeset -r STOREHOST=${MASTER} |
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[16] | 85 | |
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| 86 | #==================================================== |
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[305] | 87 | # Set environment tools (ferret, nco, cdo) |
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| 88 | #==================================================== |
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[16] | 89 | . /home/users/brock/.atlas_env_asterix_ksh |
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| 90 | |
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[343] | 91 | #==================================================== |
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[421] | 92 | # Set lf95 environment |
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| 93 | #==================================================== |
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| 94 | . /usr/local/install/lf6481/bash_laheyfort_setup |
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| 95 | |
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| 96 | #==================================================== |
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[16] | 97 | # Host specific DIRECTORIES |
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| 98 | #==================================================== |
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| 99 | |
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| 100 | #==================================================== |
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[657] | 101 | #- MirrorlibIGCM for frontend |
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| 102 | typeset -r MirrorlibIGCM=${MirrorlibIGCM:=false} |
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| 103 | |
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| 104 | #==================================================== |
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| 105 | #- libIGCM_POST for frontend |
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| 106 | typeset -r libIGCM_POST=${libIGCM} |
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| 107 | |
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| 108 | #==================================================== |
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[16] | 109 | #- R_EXE (==> BIN_DIR = ${MODIPSL}/bin ) |
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| 110 | typeset -r R_EXE="${MODIPSL}/bin" |
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| 111 | |
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| 112 | #==================================================== |
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| 113 | #- SUBMIT_DIR : submission dir |
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[256] | 114 | if [ X${PBS_O_WORKDIR} != X ] ; then |
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[657] | 115 | typeset -r SUBMIT_DIR=${SUBMIT_DIR:=${PBS_O_WORKDIR}} |
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[256] | 116 | else |
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[657] | 117 | typeset -r SUBMIT_DIR=${SUBMIT_DIR:=${PWD}} |
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[256] | 118 | fi |
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[657] | 119 | |
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[16] | 120 | #==================================================== |
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[725] | 121 | #- IN |
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| 122 | typeset -r R_IN=${R_IN:=/home/orchidee01/mmancip/IGCM} |
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| 123 | |
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| 124 | #==================================================== |
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[657] | 125 | #- ARCHIVE (dedicated to large files) |
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[800] | 126 | typeset ARCHIVE=${ARCHIVE:=/home/scratch01/${LOGIN}} |
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[16] | 127 | |
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[725] | 128 | #==================================================== |
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| 129 | #- STORAGE (dedicated to small/medium files) |
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[800] | 130 | typeset STORAGE=${ARCHIVE} |
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[282] | 131 | |
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| 132 | #==================================================== |
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[717] | 133 | #- R_OUT |
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[800] | 134 | typeset R_OUT=${ARCHIVE}/IGCM_OUT |
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[16] | 135 | |
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| 136 | #==================================================== |
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[657] | 137 | #- R_FIG (hosting figures : monitoring and atlas, and/or small files) |
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[800] | 138 | typeset R_FIG=${STORAGE}/IGCM_OUT |
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[657] | 139 | |
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| 140 | #==================================================== |
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| 141 | #- R_BUF (ONLY FOR double copy an scratch) |
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[800] | 142 | typeset -r R_BUF=${STORAGE}/IGCM_OUT |
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[657] | 143 | |
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| 144 | #==================================================== |
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| 145 | #- BIG_DIR : BIG_DIR to store files waiting for rebuild |
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[800] | 146 | typeset -r BIG_DIR=${BIG_DIR:=${STORAGE}/REBUILD} |
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[657] | 147 | |
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| 148 | #==================================================== |
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[16] | 149 | #- RUN_DIR_PATH : Temporary working directory (=> TMP) |
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[800] | 150 | typeset -r RUN_DIR_PATH=${RUN_DIR_PATH:=/scratch/$PBS_O_LOGNAME.$PBS_JOBID} |
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[16] | 151 | |
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| 152 | #==================================================== |
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| 153 | #- HOST_MPIRUN_COMMAND |
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| 154 | typeset -r HOST_MPIRUN_COMMAND=${HOST_MPIRUN_COMMAND:="time mpirun"} |
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| 155 | |
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[61] | 156 | #==================================================== |
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| 157 | #- Max number of arguments passed to nco operator or demigration command |
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| 158 | UNIX_MAX_LIMIT=360 |
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| 159 | |
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[657] | 160 | #==================================================== |
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| 161 | #- Number of core per node (max number of OpenMP task) |
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| 162 | NUM_COREPERNODE=1 |
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| 163 | |
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| 164 | #==================================================== |
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| 165 | #- Default number of MPI task for IPSL coupled model |
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| 166 | #- required for backward compatibility |
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| 167 | #- |
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| 168 | DEFAULT_NUM_PROC_OCE=1 |
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| 169 | DEFAULT_NUM_PROC_CPL=1 |
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| 170 | (( DEFAULT_NUM_PROC_ATM = BATCH_NUM_PROC_TOT - DEFAULT_NUM_PROC_OCE - DEFAULT_NUM_PROC_CPL )) |
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| 171 | DEFAULT_NUM_PROC_TOTAL=${BATCH_NUM_PROC_TOT} |
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| 172 | |
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[16] | 173 | #D-#================================================== |
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[725] | 174 | #D-function IGCM_sys_ChangeArchive |
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| 175 | #D-* Purpose: Just a dummy call on this machine |
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| 176 | #D-* Examples: |
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| 177 | #D- |
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| 178 | function IGCM_sys_ChangeArchive { |
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| 179 | |
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| 180 | IGCM_debug_Print 1 " dummy function : IGCM_sys_ChangeArchive " |
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| 181 | |
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| 182 | } |
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| 183 | |
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| 184 | #D-#================================================== |
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[16] | 185 | #D-function IGCM_sys_RshMaster |
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[800] | 186 | #D-* Purpose: Connection to frontend machine. |
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[16] | 187 | #D-* Examples: |
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| 188 | #D- |
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| 189 | function IGCM_sys_RshMaster { |
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[657] | 190 | IGCM_debug_PushStack "IGCM_sys_RshMaster" $@ |
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[664] | 191 | ssh obelix3 /bin/ksh <<-EOF |
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[16] | 192 | export libIGCM=${libIGCM} |
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[98] | 193 | export DEBUG_debug=${DEBUG_debug} |
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[16] | 194 | . ${libIGCM}/libIGCM_debug/libIGCM_debug.ksh |
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| 195 | . ${libIGCM}/libIGCM_card/libIGCM_card.ksh |
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| 196 | ${@} |
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| 197 | EOF |
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[657] | 198 | if [ $? -gt 0 ] ; then |
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| 199 | echo "IGCM_sys_RshMaster : erreur." |
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| 200 | IGCM_debug_Exit "IGCM_sys_RshMaster" |
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| 201 | fi |
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| 202 | IGCM_debug_PopStack "IGCM_sys_RshMaster" |
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[16] | 203 | } |
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| 204 | |
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| 205 | #D-#================================================== |
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[37] | 206 | #D-function IGCM_sys_RshArchive |
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| 207 | #D-* Purpose: Archive rsh command |
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| 208 | #D-* Examples: |
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| 209 | #D- |
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| 210 | function IGCM_sys_RshArchive { |
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[657] | 211 | IGCM_debug_PushStack "IGCM_sys_RshArchive" $@ |
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| 212 | /bin/ksh <<-EOF |
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[40] | 213 | ${@} |
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| 214 | EOF |
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[657] | 215 | if [ $? -gt 0 ] ; then |
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| 216 | echo "IGCM_sys_RshArchive : erreur." |
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| 217 | IGCM_debug_Exit "IGCM_sys_RshArchive" |
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| 218 | fi |
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| 219 | IGCM_debug_PopStack "IGCM_sys_RshArchive" |
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[37] | 220 | } |
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| 221 | |
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| 222 | #D-#================================================== |
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[16] | 223 | #D-function IGCM_sys_RshPost |
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[282] | 224 | #D-* Purpose: Post-process rsh command |
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[16] | 225 | #D-* Examples: |
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| 226 | #D- |
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| 227 | function IGCM_sys_RshPost { |
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[657] | 228 | IGCM_debug_PushStack "IGCM_sys_RshPost" $@ |
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| 229 | if ( $DEBUG_sys ) ; then |
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| 230 | echo "IGCM_sys_RshPost :" $@ |
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| 231 | fi |
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[800] | 232 | |
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| 233 | #echo cat tmp_IGCM_sys_RshPost_$$ INITIAL |
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| 234 | #cat tmp_IGCM_sys_RshPost_$$ |
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| 235 | # keep standard input (stdin) for the loop onto temporary file |
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| 236 | cat >tmp_IGCM_sys_RshPost_$$ |
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| 237 | |
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| 238 | # ============ FRONTEND START ============ # |
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| 239 | |
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| 240 | ssh obelix3 exec /bin/ksh <tmp_IGCM_sys_RshPost_$$ |
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[657] | 241 | if [ $? -gt 0 ] ; then |
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| 242 | echo "IGCM_sys_RshPost : erreur." |
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| 243 | IGCM_debug_Exit "IGCM_sys_RshPost" |
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| 244 | fi |
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[800] | 245 | # delete temporary file |
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| 246 | \rm tmp_IGCM_sys_RshPost_$$ |
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[657] | 247 | IGCM_debug_PopStack "IGCM_sys_RshPost" |
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[16] | 248 | } |
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| 249 | |
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| 250 | #D-#================================================== |
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[153] | 251 | #D-function IGCM_sys_SendMail |
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| 252 | #D-* Purpose: Send mail when simulation is over |
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| 253 | #D-* Examples: |
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| 254 | #D- |
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| 255 | function IGCM_sys_SendMail { |
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[657] | 256 | IGCM_debug_PushStack "IGCM_sys_SendMail" $@ |
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| 257 | if ( $DEBUG_sys ) ; then |
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| 258 | echo "IGCM_sys_SendMail :" $@ |
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| 259 | fi |
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[153] | 260 | |
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[657] | 261 | if ( ${ExitFlag} ) ; then |
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| 262 | status=failed |
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| 263 | else |
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| 264 | status=completed |
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| 265 | fi |
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[717] | 266 | |
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[657] | 267 | cat << END_MAIL > job_end.mail |
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[153] | 268 | Dear ${LOGIN}, |
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| 269 | |
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[664] | 270 | Simulation ${config_UserChoices_JobName} is ${status} on supercomputer `hostname`. |
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| 271 | Job started : ${DateBegin} |
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| 272 | Job ended : ${DateEnd} |
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[437] | 273 | Output files are available in ${R_SAVE} |
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[800] | 274 | Files to be rebuild are temporarily available in ${REBUILD_DIR} |
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| 275 | Pre-packed files are temporarily available in ${R_BUFR} |
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[452] | 276 | Script files, Script Outputs and Debug files (if necessary) are available in ${SUBMIT_DIR} |
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[437] | 277 | END_MAIL |
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| 278 | |
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[657] | 279 | if [ ! -z ${config_UserChoices_MailName} ] ; then |
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| 280 | mailx -s "${config_UserChoices_JobName} ${status}" ${config_UserChoices_MailName} < job_end.mail |
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| 281 | elif [ -f ~/.forward ] ; then |
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| 282 | mailx -s "${config_UserChoices_JobName} ${status}" $( cat ~/.forward ) < job_end.mail |
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| 283 | fi |
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[153] | 284 | |
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[657] | 285 | if [ $? -gt 0 ] ; then |
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| 286 | echo "IGCM_sys_SendMail : erreur." |
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| 287 | IGCM_debug_Exit "IGCM_sys_SendMail" |
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| 288 | fi |
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| 289 | IGCM_debug_PopStack "IGCM_sys_SendMail" |
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[153] | 290 | } |
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| 291 | |
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| 292 | #D-#================================================== |
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[16] | 293 | #D-function IGCM_sys_Mkdir |
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| 294 | #D-* Purpose: Master locale mkdir command |
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| 295 | #D-* Examples: |
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| 296 | #D- |
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| 297 | function IGCM_sys_Mkdir { |
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[657] | 298 | IGCM_debug_PushStack "IGCM_sys_Mkdir" $@ |
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| 299 | if ( $DEBUG_sys ) ; then |
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| 300 | echo "IGCM_sys_Mkdir :" $@ |
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| 301 | fi |
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| 302 | if [ ! -d ${1} ]; then |
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| 303 | \mkdir -p $1 |
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| 304 | if [ $? -gt 0 ] ; then |
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| 305 | echo "IGCM_sys_Mkdir : erreur." |
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| 306 | IGCM_debug_Exit "IGCM_sys_Mkdir" |
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[16] | 307 | fi |
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[657] | 308 | fi |
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[717] | 309 | # vérification : |
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[657] | 310 | if [ ! -d ${1} ] ; then |
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| 311 | echo "IGCM_sys_Mkdir : erreur." |
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| 312 | IGCM_debug_Exit "IGCM_sys_Mkdir" |
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| 313 | fi |
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| 314 | IGCM_debug_PopStack "IGCM_sys_Mkdir" |
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[16] | 315 | } |
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| 316 | |
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| 317 | #D-#================================================== |
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| 318 | #D-function IGCM_sys_MkdirArchive |
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| 319 | #D-* Purpose: Mkdir on Archive |
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| 320 | #D-* Examples: |
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| 321 | #D- |
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| 322 | function IGCM_sys_MkdirArchive { |
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[657] | 323 | IGCM_debug_PushStack "IGCM_sys_MkdirArchive" $@ |
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| 324 | if ( $DEBUG_sys ) ; then |
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| 325 | echo "IGCM_sys_MkdirArchive :" $@ |
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| 326 | fi |
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[717] | 327 | #- creation de repertoire sur le serveur fichier |
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[657] | 328 | if [ ! -d ${1} ]; then |
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| 329 | \mkdir -p $1 |
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| 330 | if [ $? -gt 0 ] ; then |
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| 331 | echo "IGCM_sys_MkdirArchive : erreur." |
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| 332 | IGCM_debug_Exit "IGCM_sys_MkdirArchive" |
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[16] | 333 | fi |
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[657] | 334 | fi |
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| 335 | IGCM_debug_PopStack "IGCM_sys_MkdirArchive" |
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[16] | 336 | } |
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| 337 | |
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| 338 | #D-#================================================== |
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| 339 | #D-function IGCM_sys_MkdirWork |
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| 340 | #D-* Purpose: Mkdir on Work |
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| 341 | #D-* Examples: |
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| 342 | #D- |
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| 343 | function IGCM_sys_MkdirWork { |
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[657] | 344 | IGCM_debug_PushStack "IGCM_sys_MkdirWork" $@ |
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| 345 | if ( $DEBUG_sys ) ; then |
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| 346 | echo "IGCM_sys_MkdirWork :" $@ |
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| 347 | fi |
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[717] | 348 | #- creation de repertoire sur le serveur fichier |
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[657] | 349 | if [ ! -d ${1} ]; then |
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| 350 | \mkdir -p $1 |
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| 351 | if [ $? -gt 0 ] ; then |
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| 352 | echo "IGCM_sys_MkdirWork : erreur." |
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| 353 | IGCM_debug_Exit "IGCM_sys_MkdirWork" |
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[16] | 354 | fi |
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[657] | 355 | fi |
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| 356 | IGCM_debug_PopStack "IGCM_sys_MkdirWork" |
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[16] | 357 | } |
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| 358 | |
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| 359 | #D-#================================================== |
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| 360 | #D-function IGCM_sys_Cd |
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| 361 | #D-* Purpose: master cd command |
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| 362 | #D-* Examples: |
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| 363 | #D- |
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| 364 | function IGCM_sys_Cd { |
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[657] | 365 | IGCM_debug_PushStack "IGCM_sys_Cd" $@ |
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| 366 | if ( $DEBUG_sys ) ; then |
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| 367 | echo "IGCM_sys_Cd :" $@ |
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| 368 | fi |
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| 369 | \cd $1 |
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| 370 | if [ $? -gt 0 ] ; then |
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| 371 | echo "IGCM_sys_Cd : erreur." |
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| 372 | IGCM_debug_Exit "IGCM_sys_Cd" |
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| 373 | fi |
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| 374 | IGCM_debug_PopStack "IGCM_sys_Cd" |
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[16] | 375 | } |
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| 376 | |
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| 377 | #D-#================================================== |
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| 378 | #D-function IGCM_sys_Chmod |
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| 379 | #D-* Purpose: Chmod |
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| 380 | #D-* Examples: |
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| 381 | #D- |
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| 382 | function IGCM_sys_Chmod { |
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[657] | 383 | IGCM_debug_PushStack "IGCM_sys_Chmod" -- $@ |
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| 384 | if ( $DEBUG_sys ) ; then |
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| 385 | echo "IGCM_sys_Chmod :" $@ |
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| 386 | fi |
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| 387 | if [ $DRYRUN -le 1 ]; then |
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| 388 | \chmod $@ |
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| 389 | if [ $? -gt 0 ] ; then |
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| 390 | echo "IGCM_sys_Chmod : erreur." |
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| 391 | IGCM_debug_Exit "IGCM_sys_Chmod" |
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[16] | 392 | fi |
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[657] | 393 | else |
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| 394 | ( ${DEBUG_debug} ) && echo "DRYRUN mode = " $DRYRUN >> stack |
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| 395 | fi |
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| 396 | IGCM_debug_PopStack "IGCM_sys_Chmod" |
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[16] | 397 | } |
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| 398 | |
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| 399 | #D-#================================================== |
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| 400 | #D-function IGCM_sys_FileSize |
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| 401 | #D-* Purpose: Filesize |
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| 402 | #D-* Examples: |
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| 403 | #D- |
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| 404 | function IGCM_sys_FileSize { |
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[657] | 405 | IGCM_debug_PushStack "IGCM_sys_FileSize" $@ |
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[16] | 406 | |
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[657] | 407 | typeset sizeF |
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| 408 | set +A sizeF -- $( ls -la ${1} ) |
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| 409 | if [ $? -gt 0 ] ; then |
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| 410 | IGCM_debug_Exit "IGCM_sys_FileSize" |
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| 411 | fi |
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| 412 | eval ${2}=${sizeF[4]} |
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[16] | 413 | |
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[657] | 414 | IGCM_debug_PopStack "IGCM_sys_FileSize" |
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[16] | 415 | } |
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| 416 | |
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| 417 | #D-#================================================== |
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| 418 | #D-function IGCM_sys_TestDir |
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| 419 | #D-* Purpose: Test Directory that must exists |
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| 420 | #D-* Examples: |
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| 421 | #D- |
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| 422 | function IGCM_sys_TestDir { |
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[657] | 423 | IGCM_debug_PushStack "IGCM_sys_TestDir" $@ |
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| 424 | if ( $DEBUG_sys ) ; then |
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| 425 | echo "IGCM_sys_TestDir :" $@ |
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| 426 | fi |
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| 427 | typeset ExistFlag |
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| 428 | ExistFlag=$( [ -d $1 ] && echo 0 || echo 1 ) |
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| 429 | IGCM_debug_PopStack "IGCM_sys_TestDir" |
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[67] | 430 | |
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[657] | 431 | return ${ExistFlag} |
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[16] | 432 | } |
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| 433 | |
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| 434 | #D-#================================================== |
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| 435 | #D-function IGCM_sys_TestDirArchive |
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| 436 | #D-* Purpose: Test Directory that must exists on Archive |
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| 437 | #D-* Examples: |
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| 438 | #D- |
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| 439 | function IGCM_sys_TestDirArchive { |
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[657] | 440 | IGCM_debug_PushStack "IGCM_sys_TestDirArchive" $@ |
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| 441 | if ( $DEBUG_sys ) ; then |
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| 442 | echo "IGCM_sys_TestDirArchive :" $@ |
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| 443 | fi |
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| 444 | typeset ExistFlag |
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| 445 | ExistFlag=$( [ -d $1 ] && echo 0 || echo 1 ) |
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| 446 | IGCM_debug_PopStack "IGCM_sys_TestDirArchive" |
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[67] | 447 | |
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[657] | 448 | return ${ExistFlag} |
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[16] | 449 | } |
---|
| 450 | |
---|
| 451 | #D-#================================================== |
---|
[800] | 452 | #D-function IGCM_sys_IsFileArchived |
---|
| 453 | #D-* Purpose: Test file that must NOT EXISTS on Archive |
---|
| 454 | #D-* Examples: |
---|
| 455 | #D- |
---|
| 456 | function IGCM_sys_IsFileArchived { |
---|
| 457 | IGCM_debug_PushStack "IGCM_sys_IsFileArchived" $@ |
---|
| 458 | if ( $DEBUG_sys ) ; then |
---|
| 459 | echo "IGCM_sys_IsFileArchived :" $@ |
---|
| 460 | fi |
---|
| 461 | typeset IsArchivedFlag |
---|
| 462 | # Never archived for this system |
---|
| 463 | IsArchivedFlag=1 |
---|
| 464 | IGCM_debug_PopStack "IGCM_sys_IsFileArchived" |
---|
| 465 | |
---|
| 466 | return ${IsArchivedFlag} |
---|
| 467 | } |
---|
| 468 | |
---|
| 469 | #D-#================================================== |
---|
[16] | 470 | #D-function IGCM_sys_TestFileArchive |
---|
| 471 | #D-* Purpose: Test file that must NOT EXISTS on Archive |
---|
| 472 | #D-* Examples: |
---|
| 473 | #D- |
---|
| 474 | function IGCM_sys_TestFileArchive { |
---|
[657] | 475 | IGCM_debug_PushStack "IGCM_sys_TestFileArchive" $@ |
---|
| 476 | typeset ExistFlag |
---|
| 477 | ExistFlag=$( [ -f $1 ] && echo 0 || echo 1 ) |
---|
| 478 | IGCM_debug_PopStack "IGCM_sys_TestFileArchive" |
---|
[67] | 479 | |
---|
[657] | 480 | return ${ExistFlag} |
---|
[67] | 481 | } |
---|
| 482 | |
---|
| 483 | #D-#================================================== |
---|
[657] | 484 | #D-function IGCM_sys_TestFileBuffer |
---|
| 485 | #D-* Purpose: Test file that must NOT EXISTS on Buffer |
---|
| 486 | #D-* Examples: |
---|
| 487 | #D- |
---|
| 488 | function IGCM_sys_TestFileBuffer { |
---|
| 489 | IGCM_debug_PushStack "IGCM_sys_TestFileBuffer" $@ |
---|
| 490 | typeset ExistFlag |
---|
| 491 | ExistFlag=$( [ -f $1 ] && echo 0 || echo 1 ) |
---|
| 492 | IGCM_debug_PopStack "IGCM_sys_TestFileBuffer" |
---|
| 493 | |
---|
| 494 | return ${ExistFlag} |
---|
| 495 | } |
---|
| 496 | |
---|
| 497 | #D-#================================================== |
---|
[67] | 498 | #D-function IGCM_sys_CountFileArchive |
---|
| 499 | #D-* Purpose: Count files on Archive filesystem |
---|
| 500 | #D-* Examples: |
---|
| 501 | #D- |
---|
| 502 | function IGCM_sys_CountFileArchive { |
---|
[657] | 503 | IGCM_debug_PushStack "IGCM_sys_CountFileArchive" $@ |
---|
| 504 | ls ${@} 2>/dev/null | wc -l |
---|
| 505 | if [ $? -gt 0 ] ; then |
---|
| 506 | echo "IGCM_sys_CountFileArchive : erreur." |
---|
| 507 | fi |
---|
| 508 | IGCM_debug_PopStack "IGCM_sys_CountFileArchive" |
---|
[16] | 509 | } |
---|
| 510 | |
---|
| 511 | #D-#================================================== |
---|
[657] | 512 | #D-function IGCM_sys_CountFileBuffer |
---|
| 513 | #D-* Purpose: Count files on Scratch filesystem |
---|
| 514 | #D-* Examples: |
---|
| 515 | #D- |
---|
| 516 | function IGCM_sys_CountFileBuffer { |
---|
| 517 | IGCM_debug_PushStack "IGCM_sys_CountFileBuffer" $@ |
---|
| 518 | ls ${@} 2>/dev/null | wc -l |
---|
| 519 | if [ $? -gt 0 ] ; then |
---|
| 520 | echo "IGCM_sys_CountFileBuffer : erreur." |
---|
| 521 | fi |
---|
| 522 | IGCM_debug_PopStack "IGCM_sys_CountFileBuffer" |
---|
| 523 | } |
---|
| 524 | |
---|
| 525 | #D-#================================================== |
---|
[16] | 526 | #D-function IGCM_sys_Tree |
---|
| 527 | #D-* Purpose: Tree directories with files on ${ARCHIVE} |
---|
| 528 | #D-* Examples: IGCM_sys_Tree ${R_IN} ${R_OUT} |
---|
| 529 | #D- |
---|
| 530 | function IGCM_sys_Tree { |
---|
[657] | 531 | IGCM_debug_PushStack "IGCM_sys_Tree" $@ |
---|
| 532 | if ( $DEBUG_sys ) ; then |
---|
| 533 | echo "IGCM_sys_Tree :" $@ |
---|
| 534 | fi |
---|
[16] | 535 | |
---|
[657] | 536 | \tree -f $@ |
---|
[16] | 537 | |
---|
[657] | 538 | IGCM_debug_PopStack "IGCM_sys_Tree" |
---|
[16] | 539 | } |
---|
| 540 | |
---|
| 541 | #D-#================================================== |
---|
| 542 | #D-function IGCM_sys_Tar |
---|
[657] | 543 | #D-* Purpose: master tar command |
---|
[16] | 544 | #D-* Examples: |
---|
| 545 | #D- |
---|
| 546 | function IGCM_sys_Tar { |
---|
[657] | 547 | IGCM_debug_PushStack "IGCM_sys_Tar" $@ |
---|
| 548 | if ( $DEBUG_sys ) ; then |
---|
| 549 | echo "IGCM_sys_Tar :" $@ |
---|
| 550 | fi |
---|
| 551 | \tar cf $@ |
---|
| 552 | if [ $? -gt 0 ] ; then |
---|
| 553 | echo "IGCM_sys_Tar : erreur." |
---|
| 554 | IGCM_debug_Exit "IGCM_sys_Tar" |
---|
| 555 | fi |
---|
| 556 | IGCM_debug_PopStack "IGCM_sys_Tar" |
---|
[16] | 557 | } |
---|
| 558 | |
---|
| 559 | #D-#================================================== |
---|
| 560 | #D-function IGCM_sys_UnTar |
---|
| 561 | #D-* Purpose: master un-tar command |
---|
| 562 | #D-* Examples: |
---|
| 563 | #D- |
---|
| 564 | function IGCM_sys_UnTar { |
---|
[657] | 565 | IGCM_debug_PushStack "IGCM_sys_UnTar" $@ |
---|
| 566 | if ( $DEBUG_sys ) ; then |
---|
| 567 | echo "IGCM_sys_UnTar :" $@ |
---|
| 568 | fi |
---|
| 569 | \tar xvf $1 |
---|
| 570 | if [ $? -gt 0 ] ; then |
---|
| 571 | echo "IGCM_sys_UnTar : erreur." |
---|
| 572 | IGCM_debug_Exit "IGCM_sys_UnTar" |
---|
| 573 | fi |
---|
| 574 | IGCM_debug_PopStack "IGCM_sys_UnTar" |
---|
[16] | 575 | } |
---|
| 576 | |
---|
| 577 | #D-#================================================== |
---|
| 578 | #D-function IGCM_sys_Qsub |
---|
| 579 | #D-* Purpose: Qsub new job |
---|
| 580 | #D-* Examples: |
---|
| 581 | #D- |
---|
| 582 | function IGCM_sys_Qsub { |
---|
[657] | 583 | IGCM_debug_PushStack "IGCM_sys_Qsub" $@ |
---|
| 584 | if ( $DEBUG_sys ) ; then |
---|
| 585 | echo "IGCM_sys_Qsub :" $@ |
---|
| 586 | fi |
---|
| 587 | /usr/local/bin/qsub -q medium -o ${Script_Output} -N ${config_UserChoices_JobName}.${CumulPeriod} < $1 |
---|
| 588 | if [ $? -gt 0 ] ; then |
---|
| 589 | echo "IGCM_sys_Qsub : erreur." |
---|
| 590 | IGCM_debug_Exit "IGCM_sys_Qsub" |
---|
| 591 | fi |
---|
| 592 | IGCM_debug_PopStack "IGCM_sys_Qsub" |
---|
[16] | 593 | } |
---|
| 594 | |
---|
| 595 | #D-#================================================== |
---|
| 596 | #D-function IGCM_sys_QsubPost |
---|
| 597 | #D-* Purpose: Qsub new job on scalaire |
---|
| 598 | #D-* Examples: |
---|
| 599 | #D- |
---|
| 600 | function IGCM_sys_QsubPost { |
---|
[657] | 601 | IGCM_debug_PushStack "IGCM_sys_QsubPost" $@ |
---|
| 602 | if ( $DEBUG_sys ) ; then |
---|
| 603 | echo "IGCM_sys_QsubPost :" $@ |
---|
| 604 | fi |
---|
| 605 | /usr/local/bin/qsub -q medium -o ${POST_DIR}/${Script_Post_Output}.out ${libIGCM_POST}/$1.job -v ${listVarEnv} |
---|
| 606 | if [ $? -gt 0 ] ; then |
---|
| 607 | echo "IGCM_sys_QsubPost : erreur " $@ |
---|
| 608 | IGCM_debug_Exit "IGCM_sys_QsubPost" |
---|
| 609 | fi |
---|
| 610 | IGCM_debug_PopStack "IGCM_sys_QsubPost" |
---|
[16] | 611 | } |
---|
| 612 | |
---|
| 613 | #D-************************* |
---|
[657] | 614 | #D- File transfer functions |
---|
[16] | 615 | #D-************************* |
---|
| 616 | #D- |
---|
| 617 | |
---|
| 618 | #D-#================================================== |
---|
| 619 | #D-function IGCM_sys_Rsync_out |
---|
| 620 | #D-* Purpose: treat return val of rsync |
---|
| 621 | #D-* Examples: IGCM_sys_Rsync_out out_RET_rsync |
---|
| 622 | #D- Error values and explanations can depend on your system version. |
---|
| 623 | function IGCM_sys_Rsync_out { |
---|
[717] | 624 | status=$1 |
---|
| 625 | if [ ! $status ] ; then |
---|
[657] | 626 | echo "rsync error !" |
---|
| 627 | fi |
---|
[16] | 628 | |
---|
[657] | 629 | if [ $MYLANG = "fr" ]; then |
---|
[717] | 630 | case $status in |
---|
[657] | 631 | 0) return ;; |
---|
| 632 | 1) echo "Erreur de rsync ; RERR_SYNTAX : " |
---|
| 633 | echo "Erreur de syntaxe ou d'utilisation." |
---|
| 634 | return;; |
---|
| 635 | 2) echo "Erreur de rsync ; RERR_PROTOCOL : " |
---|
| 636 | echo "Incompatibilité de protocole." |
---|
| 637 | return;; |
---|
| 638 | 3) echo "Erreur de rsync ; RERR_FILESELECT 3" |
---|
| 639 | echo "Erreurs lors de la sélection des fichiers d'entrée sortie et" |
---|
| 640 | echo "répertoires" |
---|
| 641 | return;; |
---|
| 642 | 4) echo "Erreur de rsync ; RERR_UNSUPPORTED" |
---|
| 643 | echo "Action demandée non supportée : une tentative de manipulation de" |
---|
| 644 | echo "fichiers 64-bits sur une plate-forme qui ne les supporte pas a" |
---|
| 645 | echo "été faite ; ou une option qui est supportée par le client mais" |
---|
| 646 | echo "pas par le serveur a été spécifiée." |
---|
| 647 | return;; |
---|
| 648 | 10) echo "Erreur de rsync ; RERR_SOCKETIO" |
---|
| 649 | echo "Erreur dans le socket d'entrée sortie" |
---|
| 650 | return;; |
---|
| 651 | 11) echo "Erreur de rsync ; RERR_FILEIO" |
---|
| 652 | echo "Erreur d'entrée sortie fichier" |
---|
| 653 | return;; |
---|
| 654 | 12) echo "Erreur de rsync ; RERR_STREAMIO" |
---|
| 655 | echo "Erreur dans flux de donnée du protocole rsync" |
---|
| 656 | return;; |
---|
| 657 | 13) echo "Erreur de rsync ; RERR_MESSAGEIO" |
---|
| 658 | echo "Erreur avec les diagnostics du programme" |
---|
| 659 | return;; |
---|
| 660 | 14) echo "Erreur de rsync ; RERR_IPC" |
---|
| 661 | echo "Erreur dans le code IPC" |
---|
| 662 | return;; |
---|
| 663 | 20) echo "Erreur de rsync ; RERR_SIGNAL" |
---|
| 664 | echo "SIGUSR1 ou SIGINT reçu" |
---|
| 665 | return;; |
---|
| 666 | 21) echo "Erreur de rsync ; RERR_WAITCHILD" |
---|
| 667 | echo "Une erreur retournée par waitpid()" |
---|
| 668 | return;; |
---|
| 669 | 22) echo "Erreur de rsync ; RERR_MALLOC" |
---|
| 670 | echo "Erreur lors de l'allocation des tampons de mémoire de coeur" |
---|
| 671 | return;; |
---|
| 672 | 23) echo "" |
---|
| 673 | echo "Erreur fichier inexistant" |
---|
| 674 | return;; |
---|
| 675 | 30) echo "Erreur de rsync ; RERR_TIMEOUT" |
---|
| 676 | echo "Temps d'attente écoulé dans l'envoi/réception de données" |
---|
| 677 | return;; |
---|
[717] | 678 | *) echo "Erreur de rsync : code de retour de rsync inconnu :" $status |
---|
[657] | 679 | return;; |
---|
| 680 | esac |
---|
| 681 | elif [ $MYLANG = "en" ] ; then |
---|
[717] | 682 | case $status in |
---|
[657] | 683 | 0) return;; |
---|
| 684 | 1) echo "rsync error : Syntax or usage error " |
---|
| 685 | return;; |
---|
| 686 | 2) echo "rsync error : Protocol incompatibility " |
---|
| 687 | return;; |
---|
| 688 | 3) echo "rsync error : Errors selecting input/output files, dirs" |
---|
| 689 | return;; |
---|
| 690 | 4) echo "rsync error : Requested action not supported: an attempt" |
---|
| 691 | echo "was made to manipulate 64-bit files on a platform that cannot support" |
---|
| 692 | echo "them; or an option was specified that is supported by the client and" |
---|
| 693 | echo "not by the server." |
---|
| 694 | return;; |
---|
| 695 | 5) echo "rsync error : Error starting client-server protocol" |
---|
| 696 | return;; |
---|
| 697 | 10) echo "rsync error : Error in socket I/O " |
---|
| 698 | return;; |
---|
| 699 | 11) echo "rsync error : Error in file I/O " |
---|
| 700 | return;; |
---|
| 701 | 12) echo "rsync error : Error in rsync protocol data stream " |
---|
| 702 | return;; |
---|
| 703 | 13) echo "rsync error : Errors with program diagnostics " |
---|
| 704 | return;; |
---|
| 705 | 14) echo "rsync error : Error in IPC code " |
---|
| 706 | return;; |
---|
| 707 | 20) echo "rsync error : Received SIGUSR1 or SIGINT " |
---|
| 708 | return;; |
---|
| 709 | 21) echo "rsync error : Some error returned by waitpid() " |
---|
| 710 | return;; |
---|
| 711 | 22) echo "rsync error : Error allocating core memory buffers " |
---|
| 712 | return;; |
---|
| 713 | 23) echo "rsync error : Partial transfer due to error" |
---|
| 714 | return;; |
---|
| 715 | 24) echo "rsync error : Partial transfer due to vanished source files" |
---|
| 716 | return;; |
---|
| 717 | 30) echo "rsync error : Timeout in data send/receive " |
---|
| 718 | return;; |
---|
[717] | 719 | *) echo "rsync error : return code of rsync unknown :" $status |
---|
[657] | 720 | return;; |
---|
| 721 | esac |
---|
| 722 | else |
---|
| 723 | echo "unknown language $MYLANG." |
---|
| 724 | return |
---|
| 725 | fi |
---|
[16] | 726 | } |
---|
[657] | 727 | |
---|
[16] | 728 | #D-#================================================== |
---|
| 729 | #D-function IGCM_sys_Cp |
---|
| 730 | #D-* Purpose: generic cp |
---|
| 731 | #D-* Examples: |
---|
| 732 | #D- |
---|
| 733 | function IGCM_sys_Cp { |
---|
[657] | 734 | IGCM_debug_PushStack "IGCM_sys_Cp" $@ |
---|
| 735 | if ( $DEBUG_sys ) ; then |
---|
| 736 | echo "IGCM_sys_Cp :" $@ |
---|
| 737 | fi |
---|
[16] | 738 | |
---|
[717] | 739 | typeset status |
---|
[16] | 740 | |
---|
[717] | 741 | echo cp $@ > out_rsync 2>&1 |
---|
| 742 | \cp $@ >> out_rsync 2>&1 |
---|
| 743 | status=$? |
---|
[657] | 744 | |
---|
[717] | 745 | if [ ${status} -gt 0 ] ; then |
---|
| 746 | echo "IGCM_sys_Cp : error code ${status}" |
---|
[657] | 747 | cat out_rsync |
---|
| 748 | IGCM_debug_Exit "IGCM_sys_Cp" |
---|
| 749 | else |
---|
[717] | 750 | \rm out_rsync |
---|
[657] | 751 | fi |
---|
| 752 | IGCM_debug_PopStack "IGCM_sys_Cp" |
---|
[16] | 753 | } |
---|
| 754 | |
---|
| 755 | #D-#================================================== |
---|
| 756 | #D-function IGCM_sys_Rm |
---|
| 757 | #D-* Purpose: generic rm |
---|
| 758 | #D-* Examples: |
---|
| 759 | #D- |
---|
| 760 | function IGCM_sys_Rm { |
---|
[657] | 761 | IGCM_debug_PushStack "IGCM_sys_Rm" -- $@ |
---|
| 762 | if ( $DEBUG_sys ) ; then |
---|
| 763 | echo "IGCM_sys_Rm :" $@ |
---|
| 764 | fi |
---|
[16] | 765 | |
---|
[717] | 766 | typeset status |
---|
[16] | 767 | |
---|
[657] | 768 | echo rm $@ > out_rsync 2>&1 |
---|
| 769 | \rm $@ >> out_rsync 2>&1 |
---|
[717] | 770 | status=$? |
---|
[657] | 771 | |
---|
[717] | 772 | if [ ${status} -gt 0 ] ; then |
---|
| 773 | echo "IGCM_sys_Rm : error code ${status}" |
---|
[657] | 774 | cat out_rsync |
---|
| 775 | IGCM_debug_Exit "IGCM_sys_Rm" |
---|
| 776 | else |
---|
[717] | 777 | \rm out_rsync |
---|
[657] | 778 | fi |
---|
| 779 | IGCM_debug_PopStack "IGCM_sys_Rm" |
---|
[16] | 780 | } |
---|
| 781 | |
---|
| 782 | #D-#================================================== |
---|
[203] | 783 | #D-function IGCM_sys_RmRunDir |
---|
| 784 | #D-* Purpose: rm tmpdir (dummy function most of the time batch |
---|
| 785 | #D- scheduler will do the job) |
---|
| 786 | #D-* Examples: |
---|
| 787 | #D- |
---|
| 788 | function IGCM_sys_RmRunDir { |
---|
[657] | 789 | IGCM_debug_PushStack "IGCM_sys_RmRunDir" -- $@ |
---|
| 790 | if ( $DEBUG_sys ) ; then |
---|
| 791 | echo "IGCM_sys_RmRunDir :" $@ |
---|
| 792 | fi |
---|
[282] | 793 | |
---|
[717] | 794 | typeset status |
---|
[282] | 795 | |
---|
[657] | 796 | echo rm $@ > out_rsync 2>&1 |
---|
| 797 | \rm $@ >> out_rsync 2>&1 |
---|
[717] | 798 | status=$? |
---|
[282] | 799 | |
---|
[717] | 800 | if [ ${status} -gt 0 ] ; then |
---|
| 801 | echo "IGCM_sys_RmRunDir : error code ${status}" |
---|
[657] | 802 | cat out_rsync |
---|
| 803 | IGCM_debug_Exit "IGCM_sys_RmRunDir" |
---|
[717] | 804 | else |
---|
| 805 | \rm out_rsync |
---|
[657] | 806 | fi |
---|
| 807 | IGCM_debug_PopStack "IGCM_sys_RmRunDir" |
---|
[203] | 808 | } |
---|
| 809 | |
---|
| 810 | #D-#================================================== |
---|
[16] | 811 | #D-function IGCM_sys_Mv |
---|
| 812 | #D-* Purpose: generic move |
---|
| 813 | #D-* Examples: |
---|
| 814 | #D- |
---|
| 815 | function IGCM_sys_Mv { |
---|
[657] | 816 | IGCM_debug_PushStack "IGCM_sys_Mv" $@ |
---|
| 817 | if ( $DEBUG_sys ) ; then |
---|
| 818 | echo "IGCM_sys_Mv :" $@ |
---|
| 819 | fi |
---|
[16] | 820 | |
---|
[657] | 821 | if [ $DRYRUN = 0 ]; then |
---|
[16] | 822 | |
---|
[717] | 823 | typeset status |
---|
[657] | 824 | |
---|
| 825 | echo mv $@ > out_rsync 2>&1 |
---|
| 826 | \mv $@ >> out_rsync 2>&1 |
---|
[717] | 827 | status=$? |
---|
[657] | 828 | |
---|
[717] | 829 | if [ ${status} -gt 0 ] ; then |
---|
| 830 | echo "IGCM_sys_Mv : error code ${status}" |
---|
[657] | 831 | cat out_rsync |
---|
| 832 | IGCM_debug_Exit "IGCM_sys_Mv" |
---|
[173] | 833 | else |
---|
[717] | 834 | \rm out_rsync |
---|
[16] | 835 | fi |
---|
[657] | 836 | else |
---|
| 837 | ( ${DEBUG_debug} ) && echo "DRYRUN mode = " $DRYRUN >> stack |
---|
| 838 | fi |
---|
[16] | 839 | |
---|
[657] | 840 | IGCM_debug_PopStack "IGCM_sys_Mv" |
---|
[16] | 841 | } |
---|
| 842 | |
---|
| 843 | #D-#================================================== |
---|
| 844 | #D-function IGCM_sys_Put_Dir |
---|
| 845 | #D-* Purpose: Copy a complete directory on $(ARCHIVE) |
---|
| 846 | #D-* Examples: |
---|
| 847 | #D- |
---|
| 848 | function IGCM_sys_Put_Dir { |
---|
[657] | 849 | IGCM_debug_PushStack "IGCM_sys_Put_Dir" $@ |
---|
| 850 | if ( $DEBUG_sys ) ; then |
---|
| 851 | echo "IGCM_sys_Put_Dir :" $@ |
---|
| 852 | fi |
---|
| 853 | if [ $DRYRUN = 0 ]; then |
---|
| 854 | if [ ! -d ${1} ] ; then |
---|
| 855 | echo "WARNING : IGCM_sys_Put_Dir ${1} DOES NOT EXIST ." |
---|
| 856 | IGCM_debug_PopStack "IGCM_sys_Put_Dir" |
---|
| 857 | return |
---|
[16] | 858 | fi |
---|
| 859 | |
---|
[717] | 860 | typeset status |
---|
[16] | 861 | |
---|
[717] | 862 | # Only if we use rsync |
---|
| 863 | #IGCM_sys_TestDirArchive $( dirname $2 ) |
---|
| 864 | # |
---|
| 865 | #USUAL WAY |
---|
| 866 | \cp -r $1 $2 > out_rsync 2>&1 |
---|
| 867 | status=$? |
---|
[16] | 868 | |
---|
[717] | 869 | if [ ${status} -gt 0 ] ; then |
---|
| 870 | echo "IGCM_sys_Put_Dir : error code ${status}" |
---|
[657] | 871 | cat out_rsync |
---|
| 872 | IGCM_debug_Exit "IGCM_sys_Put_Dir" |
---|
[16] | 873 | else |
---|
[717] | 874 | \rm out_rsync |
---|
[16] | 875 | fi |
---|
[657] | 876 | else |
---|
| 877 | ( ${DEBUG_debug} ) && echo "DRYRUN mode = " $DRYRUN >> stack |
---|
| 878 | fi |
---|
| 879 | IGCM_debug_PopStack "IGCM_sys_Put_Dir" |
---|
[16] | 880 | } |
---|
| 881 | |
---|
| 882 | #D-#================================================== |
---|
| 883 | #D-function IGCM_sys_Get_Dir |
---|
[717] | 884 | #D-* Purpose: Copy a complete directory from ${ARCHIVE} |
---|
[16] | 885 | #D-* Examples: |
---|
| 886 | #D- |
---|
| 887 | function IGCM_sys_Get_Dir { |
---|
[657] | 888 | IGCM_debug_PushStack "IGCM_sys_Get_Dir" $@ |
---|
| 889 | if ( $DEBUG_sys ) ; then |
---|
| 890 | echo "IGCM_sys_Get_Dir :" $@ |
---|
| 891 | fi |
---|
| 892 | if [ $DRYRUN = 0 ]; then |
---|
| 893 | if [ ! -d ${1} ] ; then |
---|
| 894 | echo "WARNING : IGCM_sys_Get_Dir ${1} DOES NOT EXIST ." |
---|
| 895 | IGCM_debug_PopStack "IGCM_sys_Get_Dir" |
---|
| 896 | return |
---|
[16] | 897 | fi |
---|
| 898 | |
---|
[717] | 899 | typeset status |
---|
[16] | 900 | |
---|
[719] | 901 | #USUAL WAY |
---|
[657] | 902 | \cp -R $1 $2 > out_rsync 2>&1 |
---|
[717] | 903 | status=$? |
---|
[16] | 904 | |
---|
[717] | 905 | if [ ${status} -gt 0 ] ; then |
---|
[657] | 906 | echo "IGCM_sys_Get_Dir : error." |
---|
| 907 | cat out_rsync |
---|
| 908 | IGCM_debug_Exit "IGCM_sys_Get_Dir" |
---|
[16] | 909 | else |
---|
[717] | 910 | \rm out_rsync |
---|
[16] | 911 | fi |
---|
[657] | 912 | else |
---|
| 913 | ( ${DEBUG_debug} ) && echo "DRYRUN mode = " $DRYRUN >> stack |
---|
| 914 | fi |
---|
| 915 | IGCM_debug_PopStack "IGCM_sys_Get_Dir" |
---|
[16] | 916 | } |
---|
| 917 | |
---|
| 918 | #D-#================================================== |
---|
| 919 | #D-function IGCM_sys_Get_Master |
---|
| 920 | #D-* Purpose: Copy a complete directory from MASTER filesystem |
---|
| 921 | #D-* Examples: |
---|
| 922 | #D- |
---|
| 923 | function IGCM_sys_Get_Master { |
---|
[657] | 924 | IGCM_debug_PushStack "IGCM_sys_Get_Master" $@ |
---|
| 925 | if ( $DEBUG_sys ) ; then |
---|
| 926 | echo "IGCM_sys_Get_Master :" $@ |
---|
| 927 | fi |
---|
| 928 | if [ $DRYRUN = 0 ]; then |
---|
| 929 | if ( [ ! -d ${1} ] && [ ! -f ${1} ] ) ; then |
---|
| 930 | echo "WARNING : IGCM_sys_Get_Master ${1} DOES NOT EXIST ." |
---|
| 931 | IGCM_debug_PopStack "IGCM_sys_Get_Master" |
---|
| 932 | return |
---|
[16] | 933 | fi |
---|
| 934 | |
---|
[717] | 935 | typeset status |
---|
[16] | 936 | |
---|
[719] | 937 | #USUAL WAY |
---|
[669] | 938 | cp -RL $1 $2 > out_rsync 2>&1 |
---|
[717] | 939 | status=$? |
---|
[16] | 940 | |
---|
[717] | 941 | if [ ${status} -gt 0 ] ; then |
---|
[657] | 942 | echo "IGCM_sys_Get_Master : error." |
---|
| 943 | cat out_rsync |
---|
| 944 | IGCM_debug_Exit "IGCM_sys_Get_Master" |
---|
[16] | 945 | else |
---|
[657] | 946 | rm out_rsync |
---|
[16] | 947 | fi |
---|
[657] | 948 | else |
---|
| 949 | ( ${DEBUG_debug} ) && echo "DRYRUN mode = " $DRYRUN >> stack |
---|
| 950 | fi |
---|
| 951 | IGCM_debug_PopStack "IGCM_sys_Get_Master" |
---|
[16] | 952 | } |
---|
| 953 | |
---|
| 954 | #D-#================================================== |
---|
| 955 | #D-function IGCM_sys_Put_Rest |
---|
[717] | 956 | #D-* Purpose: Put computied restarts on ${ARCHIVE}. |
---|
[282] | 957 | #D- File and target directory must exist. |
---|
[16] | 958 | #D-* Examples: |
---|
| 959 | #D- |
---|
| 960 | function IGCM_sys_Put_Rest { |
---|
[657] | 961 | IGCM_debug_PushStack "IGCM_sys_Put_Rest" $@ |
---|
| 962 | if ( $DEBUG_sys ) ; then |
---|
| 963 | echo "IGCM_sys_Put_Rest :" $@ |
---|
| 964 | fi |
---|
| 965 | if [ $DRYRUN = 0 ]; then |
---|
| 966 | if [ ! -f ${1} ] ; then |
---|
| 967 | echo "ERROR : IGCM_sys_Put_Rest ${1} DOES NOT EXIST ." |
---|
| 968 | IGCM_debug_Exit "IGCM_sys_Put_Rest" |
---|
[16] | 969 | fi |
---|
[717] | 970 | |
---|
| 971 | typeset status |
---|
| 972 | # |
---|
[657] | 973 | if [ X${JobType} = XRUN ] ; then |
---|
| 974 | IGCM_sys_Chmod 444 ${1} |
---|
| 975 | fi |
---|
[16] | 976 | |
---|
[717] | 977 | # |
---|
| 978 | # USUAL WAY |
---|
| 979 | \cp $1 $2 > out_rsync 2>&1 |
---|
| 980 | status=$? |
---|
[16] | 981 | |
---|
[717] | 982 | # #RSYNC WITH NETWORK SSH CALL |
---|
| 983 | # echo ${RSYNC} ${RSYNC_opt} -e ssh ${RUN_DIR}/$1 ${STOREHOST}:${2} > out_rsync 2>&1 |
---|
| 984 | # ${RSYNC} ${RSYNC_opt} -e ssh ${RUN_DIR}/$1 ${STOREHOST}:${2} >> out_rsync 2>&1 |
---|
[16] | 985 | |
---|
[717] | 986 | # #RSYNC WITH NFS USE |
---|
| 987 | # echo ${RSYNC} ${RSYNC_opt} ${RUN_DIR}/$1 ${2} > out_rsync 2>&1 |
---|
| 988 | # ${RSYNC} ${RSYNC_opt} ${RUN_DIR}/$1 ${2} >> out_rsync 2>&1 |
---|
[16] | 989 | |
---|
[717] | 990 | # status=$? |
---|
| 991 | # IGCM_sys_Rsync_out $status |
---|
| 992 | |
---|
| 993 | # ${libIGCM}/libIGCM_sys/IGCM_analyse_rsync_out.awk out_rsync |
---|
| 994 | # (( status=status+$? )) |
---|
| 995 | |
---|
| 996 | if [ ${status} -gt 0 ] ; then |
---|
| 997 | echo "IGCM_sys_Put_Rest : cp failed error code ${status}" |
---|
[657] | 998 | cat out_rsync |
---|
| 999 | IGCM_debug_Exit "IGCM_sys_Put_Rest" |
---|
| 1000 | else |
---|
[717] | 1001 | \rm out_rsync |
---|
[657] | 1002 | fi |
---|
| 1003 | else |
---|
| 1004 | ( ${DEBUG_debug} ) && echo "DRYRUN mode = " $DRYRUN >> stack |
---|
| 1005 | fi |
---|
| 1006 | IGCM_debug_PopStack "IGCM_sys_Put_Rest" |
---|
| 1007 | } |
---|
[16] | 1008 | |
---|
[657] | 1009 | #D-#================================================== |
---|
| 1010 | #D-function IGCM_sys_PutBuffer_Rest |
---|
| 1011 | #D-* Purpose: Put computied restarts on ${SCRATCHDIR}. |
---|
| 1012 | #D- File and target directory must exist. |
---|
| 1013 | #D-* Examples: |
---|
| 1014 | #D- |
---|
| 1015 | function IGCM_sys_PutBuffer_Rest { |
---|
| 1016 | IGCM_debug_PushStack "IGCM_sys_PutBuffer_Rest" $@ |
---|
| 1017 | if ( $DEBUG_sys ) ; then |
---|
| 1018 | echo "IGCM_sys_PutBuffer_Rest :" $@ |
---|
| 1019 | fi |
---|
| 1020 | if [ $DRYRUN = 0 ]; then |
---|
| 1021 | if [ ! -f ${1} ] ; then |
---|
| 1022 | echo "ERROR : IGCM_sys_PutBuffer_Rest ${1} DOES NOT EXIST ." |
---|
| 1023 | IGCM_debug_Exit "IGCM_sys_PutBuffer_Rest" |
---|
| 1024 | fi |
---|
[16] | 1025 | |
---|
[717] | 1026 | typeset status |
---|
[657] | 1027 | # |
---|
| 1028 | if [ X${JobType} = XRUN ] ; then |
---|
| 1029 | IGCM_sys_Chmod 444 ${1} |
---|
| 1030 | fi |
---|
| 1031 | |
---|
| 1032 | # |
---|
| 1033 | # USUAL WAY |
---|
| 1034 | \cp $1 $2 > out_rsync 2>&1 |
---|
[717] | 1035 | status=$? |
---|
[657] | 1036 | |
---|
[717] | 1037 | if [ ${status} -gt 0 ] ; then |
---|
| 1038 | echo "IGCM_sys_PutBuffer_Rest : error code ${status}" |
---|
[657] | 1039 | cat out_rsync |
---|
| 1040 | IGCM_debug_Exit "IGCM_sys_PutBuffer_Rest" |
---|
[16] | 1041 | else |
---|
[657] | 1042 | \rm out_rsync |
---|
[16] | 1043 | fi |
---|
[657] | 1044 | else |
---|
| 1045 | ( ${DEBUG_debug} ) && echo "DRYRUN mode = " $DRYRUN >> stack |
---|
| 1046 | fi |
---|
| 1047 | IGCM_debug_PopStack "IGCM_sys_PutBuffer_Rest" |
---|
[16] | 1048 | } |
---|
| 1049 | |
---|
| 1050 | #D-#================================================== |
---|
[801] | 1051 | #D-function IGCM_sys_PrepareTaredRestart |
---|
| 1052 | #D-* Purpose: Prepare tared restart to be access by computing job. Identity here. |
---|
| 1053 | #D-* Examples: |
---|
| 1054 | #D- |
---|
| 1055 | function IGCM_sys_PrepareTaredRestart { |
---|
| 1056 | IGCM_debug_PushStack "IGCM_sys_PrepareTaredRestart" $@ |
---|
| 1057 | echo $1 |
---|
| 1058 | IGCM_debug_PopStack "IGCM_sys_PrepareTaredRestart" |
---|
| 1059 | } |
---|
| 1060 | |
---|
| 1061 | #D-#================================================== |
---|
[16] | 1062 | #D-function IGCM_sys_Put_Out |
---|
[717] | 1063 | #D-* Purpose: Copy a file on ${ARCHIVE} after having chmod it in readonly |
---|
[16] | 1064 | #D-* Examples: |
---|
| 1065 | #D- |
---|
| 1066 | function IGCM_sys_Put_Out { |
---|
[657] | 1067 | IGCM_debug_PushStack "IGCM_sys_Put_Out" $@ |
---|
| 1068 | if ( $DEBUG_sys ) ; then |
---|
| 1069 | echo "IGCM_sys_Put_Out :" $@ |
---|
| 1070 | fi |
---|
| 1071 | if [ $DRYRUN = 0 ]; then |
---|
| 1072 | if [ -f ${1} ] ; then |
---|
| 1073 | if [ ! -d $( dirname $2 ) ] ; then |
---|
| 1074 | IGCM_sys_MkdirArchive $( dirname $2 ) |
---|
| 1075 | fi |
---|
| 1076 | else |
---|
| 1077 | echo "WARNING : IGCM_sys_Put_Out ${1} DOES NOT EXIST ." |
---|
| 1078 | IGCM_debug_PopStack "IGCM_sys_Put_Out" |
---|
| 1079 | return 1 |
---|
[16] | 1080 | fi |
---|
| 1081 | |
---|
[717] | 1082 | typeset status |
---|
[719] | 1083 | # |
---|
[657] | 1084 | if [ X${JobType} = XRUN ] ; then |
---|
| 1085 | if [ X${3} = X ] ; then |
---|
| 1086 | IGCM_sys_Chmod 444 ${1} |
---|
| 1087 | fi |
---|
| 1088 | fi |
---|
[717] | 1089 | # |
---|
[16] | 1090 | |
---|
[657] | 1091 | echo ${RSYNC} ${RSYNC_opt} $1 $2 > out_rsync 2>&1 |
---|
| 1092 | ${RSYNC} ${RSYNC_opt} $1 $2 >> out_rsync 2>&1 |
---|
[717] | 1093 | status=$? |
---|
| 1094 | IGCM_sys_Rsync_out $status |
---|
[16] | 1095 | |
---|
[657] | 1096 | ${libIGCM}/libIGCM_sys/IGCM_analyse_rsync_out.awk out_rsync |
---|
[717] | 1097 | (( status=status+$? )) |
---|
[16] | 1098 | |
---|
[717] | 1099 | if [ ${status} -gt 0 ] ; then |
---|
[657] | 1100 | echo "IGCM_sys_Put_Out : error." |
---|
| 1101 | cat out_rsync |
---|
| 1102 | IGCM_debug_Exit "IGCM_sys_Put_Out" |
---|
[16] | 1103 | else |
---|
[717] | 1104 | \rm out_rsync |
---|
[16] | 1105 | fi |
---|
[657] | 1106 | else |
---|
| 1107 | ( ${DEBUG_debug} ) && echo "DRYRUN mode = " $DRYRUN >> stack |
---|
| 1108 | fi |
---|
| 1109 | IGCM_debug_PopStack "IGCM_sys_Put_Out" |
---|
| 1110 | return 0 |
---|
[16] | 1111 | } |
---|
| 1112 | |
---|
| 1113 | #D-#================================================== |
---|
[657] | 1114 | #D-function IGCM_sys_PutBuffer_Out |
---|
| 1115 | #D-* Purpose: Copy a file on ${SCRATCHDIR} after having chmod it in readonly |
---|
| 1116 | #D-* Examples: |
---|
| 1117 | #D- |
---|
| 1118 | function IGCM_sys_PutBuffer_Out { |
---|
| 1119 | IGCM_debug_PushStack "IGCM_sys_PutBuffer_Out" $@ |
---|
| 1120 | if ( $DEBUG_sys ) ; then |
---|
| 1121 | echo "IGCM_sys_PutBuffer_Out :" $@ |
---|
| 1122 | fi |
---|
[719] | 1123 | |
---|
| 1124 | typeset status |
---|
| 1125 | |
---|
[657] | 1126 | if [ $DRYRUN = 0 ]; then |
---|
| 1127 | if [ ! -f ${1} ] ; then |
---|
| 1128 | echo "WARNING : IGCM_sys_PutBuffer_Out ${1} DOES NOT EXIST ." |
---|
| 1129 | IGCM_debug_PopStack "IGCM_sys_PutBuffer_Out" |
---|
| 1130 | return 1 |
---|
| 1131 | fi |
---|
| 1132 | # |
---|
| 1133 | IGCM_sys_Mkdir $( dirname $2 ) |
---|
| 1134 | # |
---|
| 1135 | |
---|
| 1136 | if [ X${JobType} = XRUN ] ; then |
---|
| 1137 | if [ X${3} = X ] ; then |
---|
| 1138 | IGCM_sys_Chmod 444 ${1} |
---|
| 1139 | fi |
---|
| 1140 | fi |
---|
| 1141 | # |
---|
| 1142 | # USUAL WAY |
---|
| 1143 | \cp $1 $2 > out_rsync 2>&1 |
---|
[717] | 1144 | status=$? |
---|
[657] | 1145 | |
---|
[717] | 1146 | if [ ${status} -gt 0 ] ; then |
---|
[657] | 1147 | echo "IGCM_sys_PutBuffer_Out : error." |
---|
| 1148 | cat out_rsync |
---|
| 1149 | IGCM_debug_Exit "IGCM_sys_PutBuffer_Out" |
---|
| 1150 | else |
---|
| 1151 | \rm out_rsync |
---|
| 1152 | fi |
---|
| 1153 | else |
---|
| 1154 | ( ${DEBUG_debug} ) && echo "DRYRUN mode = " $DRYRUN >> stack |
---|
| 1155 | fi |
---|
| 1156 | IGCM_debug_PopStack "IGCM_sys_PutBuffer_Out" |
---|
| 1157 | return 0 |
---|
| 1158 | } |
---|
| 1159 | |
---|
| 1160 | #D-#================================================== |
---|
[16] | 1161 | #D-function IGCM_sys_Get |
---|
| 1162 | #D-* Purpose: Get a file from ${ARCHIVE} |
---|
| 1163 | #D-* Examples: IGCM_sys_Get myfile /destpath/myfile_with_PREFIX |
---|
| 1164 | #D- IGCM_sys_Get /l Array_contain_myfiles /destpath/ |
---|
| 1165 | function IGCM_sys_Get { |
---|
[657] | 1166 | IGCM_debug_PushStack "IGCM_sys_Get" $@ |
---|
[16] | 1167 | |
---|
[717] | 1168 | typeset DEST RET status dm_liste ifile target |
---|
[16] | 1169 | |
---|
[657] | 1170 | if ( $DEBUG_sys ) ; then |
---|
| 1171 | echo "IGCM_sys_Get :" $@ |
---|
| 1172 | fi |
---|
| 1173 | if [ $DRYRUN -le 2 ]; then |
---|
| 1174 | if [ X${1} = X'/l' ] ; then |
---|
[717] | 1175 | # test if the first file is present in the old computation : |
---|
[657] | 1176 | eval set +A dm_liste \${${2}} |
---|
| 1177 | else |
---|
| 1178 | dm_liste=${1} |
---|
[16] | 1179 | fi |
---|
[657] | 1180 | eval DEST=\${${#}} |
---|
[16] | 1181 | |
---|
[717] | 1182 | # test if the (first) file is present in the old computation : |
---|
[657] | 1183 | IGCM_sys_TestFileArchive ${dm_liste[0]} |
---|
[717] | 1184 | status=$? |
---|
| 1185 | if [ ${status} -gt 0 ] ; then |
---|
[657] | 1186 | echo "IGCM_sys_Get, ERROR : regular file ${dm_liste[0]} DOES NOT EXIST ." |
---|
| 1187 | IGCM_debug_Exit "IGCM_sys_Get" |
---|
[719] | 1188 | #return |
---|
[657] | 1189 | fi |
---|
[16] | 1190 | |
---|
[657] | 1191 | (( RET=0 )) |
---|
| 1192 | for target in ${dm_liste[*]} ; do |
---|
| 1193 | \cp ${target} ${DEST} >> out_rsync 2>&1 |
---|
| 1194 | (( RET=RET+$? )) |
---|
| 1195 | done |
---|
[16] | 1196 | |
---|
| 1197 | # echo ${RSYNC} ${RSYNC_opt} $@ > out_rsync 2>&1 |
---|
| 1198 | # ${RSYNC} ${RSYNC_opt} $@ >> out_rsync 2>&1 |
---|
[717] | 1199 | # status=$? |
---|
| 1200 | # IGCM_sys_Rsync_out $status |
---|
[16] | 1201 | |
---|
[657] | 1202 | # ${libIGCM}/libIGCM_sys/IGCM_analyse_rsync_out.awk out_rsync |
---|
| 1203 | # (( RET=RET+$? )) |
---|
[16] | 1204 | |
---|
[657] | 1205 | if [ ${RET} -gt 0 ] ; then |
---|
[717] | 1206 | echo "IGCM_sys_Get : error" |
---|
[657] | 1207 | cat out_rsync |
---|
[717] | 1208 | \rm out_rsync |
---|
[657] | 1209 | IGCM_debug_Exit "IGCM_sys_Get" |
---|
[16] | 1210 | else |
---|
[717] | 1211 | \rm out_rsync |
---|
[16] | 1212 | fi |
---|
[657] | 1213 | else |
---|
| 1214 | ( ${DEBUG_debug} ) && echo "DRYRUN mode = " $DRYRUN >> stack |
---|
| 1215 | fi |
---|
| 1216 | IGCM_debug_PopStack "IGCM_sys_Get" |
---|
[16] | 1217 | } |
---|
| 1218 | |
---|
| 1219 | #D-#================================================== |
---|
[657] | 1220 | #D-function IGCM_sys_GetBuffer |
---|
| 1221 | #D-* Purpose: Get a file from ${SCRATCHDIR} |
---|
| 1222 | #D-* Examples: IGCM_sys_GetBuffer myfile /destpath/myfile_with_PREFIX |
---|
| 1223 | #D- IGCM_sys_GetBuffer /l Array_contain_myfiles /destpath/ |
---|
| 1224 | function IGCM_sys_GetBuffer { |
---|
| 1225 | IGCM_debug_PushStack "IGCM_sys_GetBuffer" $@ |
---|
| 1226 | |
---|
[717] | 1227 | typeset DEST RET status buf_liste ifile target file_work |
---|
[657] | 1228 | |
---|
| 1229 | if ( $DEBUG_sys ) ; then |
---|
| 1230 | echo "IGCM_sys_GetBuffer :" $@ |
---|
| 1231 | fi |
---|
| 1232 | if [ $DRYRUN -le 2 ]; then |
---|
| 1233 | if [ X${1} = X'/l' ] ; then |
---|
| 1234 | # test if the first file is present in the old computation : |
---|
| 1235 | eval set +A buf_liste \${${2}} |
---|
| 1236 | else |
---|
| 1237 | eval set +A buf_liste ${1} |
---|
| 1238 | fi |
---|
| 1239 | eval DEST=\${${#}} |
---|
| 1240 | |
---|
| 1241 | #USUAL WAY |
---|
| 1242 | if [ X${1} = X'/l' ] ; then |
---|
| 1243 | (( RET=0 )) |
---|
| 1244 | for target in ${buf_liste[*]} ; do |
---|
| 1245 | local_file=$( basename ${target} ) |
---|
| 1246 | \cp ${target} ${DEST}/${local_file} >> out_rsync 2>&1 |
---|
| 1247 | (( RET = RET + $? )) |
---|
| 1248 | done |
---|
| 1249 | else |
---|
| 1250 | \cp ${buf_liste} ${DEST} >> out_rsync 2>&1 |
---|
[717] | 1251 | status=$? |
---|
[657] | 1252 | fi |
---|
| 1253 | |
---|
| 1254 | if [ ${RET} -gt 0 ] ; then |
---|
[717] | 1255 | echo "IGCM_sys_GetBuffer : error" |
---|
[657] | 1256 | cat out_rsync |
---|
[717] | 1257 | \rm out_rsync |
---|
[657] | 1258 | IGCM_debug_Exit "IGCM_sys_GetBuffer" |
---|
| 1259 | else |
---|
| 1260 | \rm out_rsync |
---|
| 1261 | fi |
---|
| 1262 | else |
---|
| 1263 | ( ${DEBUG_debug} ) && echo "DRYRUN mode = " $DRYRUN >> stack |
---|
| 1264 | fi |
---|
| 1265 | IGCM_debug_PopStack "IGCM_sys_GetBuffer" |
---|
| 1266 | } |
---|
| 1267 | |
---|
| 1268 | #D-#================================================== |
---|
| 1269 | #D-function IGCM_sys_GetDate_FichWork |
---|
| 1270 | #D-* Purpose: donne la date filesys d'un fichier sur le filesystem WORK |
---|
| 1271 | #D-* Examples: |
---|
| 1272 | #D- |
---|
| 1273 | function IGCM_sys_GetDate_FichWork { |
---|
| 1274 | IGCM_debug_PushStack "IGCM_sys_FichWork" $@ |
---|
| 1275 | if ( $DEBUG_sys ) ; then |
---|
| 1276 | echo "IGCM_sys_GetDate_FichWork :" $@ |
---|
| 1277 | fi |
---|
| 1278 | typeset dateF |
---|
| 1279 | set +A dateF -- $( ls -l --full-time --time-style='+%Y%m%d%H%M%S' ${1} ) |
---|
| 1280 | eval ${2}=${dateF[5]} |
---|
| 1281 | |
---|
[800] | 1282 | # donne la date filesys d'un fichier sur la machine work |
---|
[657] | 1283 | IGCM_debug_PopStack "IGCM_sys_FichWork" |
---|
| 1284 | } |
---|
| 1285 | |
---|
| 1286 | #D-#================================================== |
---|
| 1287 | #D-function IGCM_sys_GetDate_FichArchive |
---|
| 1288 | #D-* Purpose: donne la date filesys d'un fichier sur le filesystem ARCHIVE |
---|
| 1289 | #D-* Examples: |
---|
| 1290 | #D- |
---|
| 1291 | function IGCM_sys_GetDate_FichArchive { |
---|
| 1292 | IGCM_debug_PushStack "IGCM_sys_FichArchive" $@ |
---|
| 1293 | if ( $DEBUG_sys ) ; then |
---|
| 1294 | echo "IGCM_sys_GetDate_FichArchive :" $@ |
---|
| 1295 | fi |
---|
| 1296 | typeset dateF |
---|
| 1297 | set +A dateF -- $( ls -l --full-time --time-style='+%Y%m%d%H%M%S' ${1} ) |
---|
| 1298 | eval ${2}=${dateF[5]} |
---|
| 1299 | |
---|
| 1300 | IGCM_debug_PopStack "IGCM_sys_FichArchive" |
---|
| 1301 | } |
---|
| 1302 | |
---|
| 1303 | #D-#================================================== |
---|
[343] | 1304 | #D-function IGCM_sys_Dods_Rm |
---|
[717] | 1305 | #D-* Purpose: DO NOTHING ! Put ${ARCHIVE} files on DODS internet protocole. |
---|
[343] | 1306 | #D-* Examples: |
---|
| 1307 | #D- |
---|
| 1308 | function IGCM_sys_Dods_Rm { |
---|
[657] | 1309 | if ( $DEBUG_sys ) ; then |
---|
| 1310 | echo "IGCM_sys_Dods_Rm :" $@ |
---|
| 1311 | fi |
---|
| 1312 | return 0 |
---|
[343] | 1313 | } |
---|
| 1314 | |
---|
| 1315 | #D-#================================================== |
---|
| 1316 | #D-function IGCM_sys_Dods_Cp |
---|
[717] | 1317 | #D-* Purpose: Copy $(ARCHIVE) files on DODS internet protocole. |
---|
[343] | 1318 | #D-* Examples: |
---|
| 1319 | #D- |
---|
| 1320 | function IGCM_sys_Dods_Cp { |
---|
[657] | 1321 | if ( $DEBUG_sys ) ; then |
---|
| 1322 | echo "IGCM_sys_Dods_Cp :" $@ |
---|
| 1323 | fi |
---|
| 1324 | return 0 |
---|
[343] | 1325 | } |
---|
| 1326 | |
---|
| 1327 | #D-#================================================== |
---|
[16] | 1328 | #D-function IGCM_sys_Put_Dods |
---|
[717] | 1329 | #D-* Purpose: Put $(ARCHIVE) files on DODS internet protocole. |
---|
[16] | 1330 | #D-* Examples: |
---|
| 1331 | #D- |
---|
| 1332 | function IGCM_sys_Put_Dods { |
---|
[657] | 1333 | IGCM_debug_PushStack "IGCM_sys_Put_Dods" $@ |
---|
| 1334 | if ( $DEBUG_sys ) ; then |
---|
| 1335 | echo "IGCM_sys_Put_Dods :" $@ |
---|
| 1336 | fi |
---|
| 1337 | IGCM_debug_PopStack "IGCM_sys_Put_Dods" |
---|
[16] | 1338 | } |
---|
| 1339 | |
---|
[657] | 1340 | ############################################################## |
---|
| 1341 | # REBUILD OPERATOR |
---|
[536] | 1342 | |
---|
[657] | 1343 | function IGCM_sys_rebuild { |
---|
| 1344 | IGCM_debug_PushStack "IGCM_sys_rebuild" -- $@ |
---|
| 1345 | if ( $DEBUG_sys ) ; then |
---|
| 1346 | echo "IGCM_sys_rebuild :" $@ |
---|
| 1347 | fi |
---|
[717] | 1348 | |
---|
| 1349 | typeset status |
---|
| 1350 | |
---|
[657] | 1351 | /home/users/igcmg/rebuild/bin/rebuild -f -o $@ |
---|
[717] | 1352 | status=$? |
---|
| 1353 | if [ ${status} -gt 0 ] ; then |
---|
| 1354 | IGCM_debug_Print 2 "IGCM_sys_rebuild : error code ${status}" |
---|
[657] | 1355 | IGCM_debug_Exit "rebuild" |
---|
| 1356 | fi |
---|
| 1357 | |
---|
| 1358 | IGCM_debug_PopStack "IGCM_sys_rebuild" |
---|
[16] | 1359 | } |
---|
| 1360 | |
---|
[697] | 1361 | function IGCM_sys_rebuild_station { |
---|
| 1362 | IGCM_debug_PushStack "IGCM_sys_rebuild_station" -- $@ |
---|
| 1363 | typeset i list_opt file_in file_out prefix_invert list_invert |
---|
| 1364 | if ( $DEBUG_sys ) ; then |
---|
| 1365 | echo "IGCM_sys_rebuild_station :" $@ |
---|
| 1366 | fi |
---|
| 1367 | list_opt=$@ |
---|
| 1368 | |
---|
[800] | 1369 | # Invert Axis : t,x -> x,t |
---|
[697] | 1370 | # t,pres,x -> x,t,pres |
---|
| 1371 | # So that we can concatenate along x |
---|
| 1372 | i=0 |
---|
| 1373 | for file_in in ${list_opt} ; do |
---|
| 1374 | (( i = i + 1)) |
---|
| 1375 | [ ${i} = 1 ] && file_out=${file_in} && continue |
---|
| 1376 | prefix_invert=$( basename ${file_in} .nc ) |
---|
| 1377 | IGCM_sys_ncpdq -a x,time_counter -a x,time_counter,presnivs ${file_in} ${prefix_invert}_xt.nc |
---|
| 1378 | list_invert[${#list_invert[*]}]=${prefix_invert}_xt.nc |
---|
| 1379 | done |
---|
| 1380 | |
---|
| 1381 | # Concatenate |
---|
| 1382 | IGCM_sys_ncrcat ${list_invert[*]} histstn_xt.nc |
---|
| 1383 | |
---|
| 1384 | # Re-ivert file |
---|
| 1385 | IGCM_sys_ncpdq -a time_counter,x -a time_counter,presnivs,x histstn_xt.nc ${file_out} |
---|
| 1386 | |
---|
| 1387 | # Station re-ordering is too expansive to be run within libICGM |
---|
| 1388 | # This is due to (ncpdq - nrcat - ncpdq) I/O sequence. |
---|
| 1389 | # This re-ordering must be done "in memory" by the cmorization process |
---|
| 1390 | # Anyway this is the best sequence using (ncpdq - nrcat - ncpdq) |
---|
| 1391 | # BEGIN reordering |
---|
| 1392 | |
---|
| 1393 | # Only LMDZ text output contains the exact ordering of the station. |
---|
| 1394 | # We isolate this in the code below: |
---|
| 1395 | # 0 38 -157.5000000000000 70.98591549295774 |
---|
| 1396 | # 0 54 27.49999999999999 67.18309859154928 |
---|
| 1397 | # 0 56 -62.50000000000001 82.39436619718309 |
---|
| 1398 | # 0 79 12.49999999999999 78.59154929577466 |
---|
| 1399 | # 0 116 -165.0000000000000 76.05633802816901 |
---|
| 1400 | # 0 117 130.0000000000000 70.98591549295774 |
---|
| 1401 | # 0 118 110.0000000000000 87.46478873239437 |
---|
| 1402 | # 1 40 4.999999999999995 51.97183098591550 |
---|
| 1403 | # typeset iStation iProc list_opt file_in file_out prefix_invert |
---|
| 1404 | # typeset -Z4 j4 |
---|
| 1405 | # typeset -Z3 j3 |
---|
| 1406 | |
---|
| 1407 | # unset list_opt |
---|
| 1408 | # set +A list_opt $@ |
---|
| 1409 | |
---|
| 1410 | # Filename after rebuild |
---|
| 1411 | # file_out=${list_opt[0]} |
---|
| 1412 | # Prefix of output files |
---|
| 1413 | # prefix_invert=$( basename ${file_out} .nc ) |
---|
| 1414 | # Number of procs |
---|
| 1415 | # num_proc=$( grep -i mpi_size ${PREFIX}_${Exe_Output} | wc -l ) |
---|
| 1416 | |
---|
| 1417 | # iProc=0 |
---|
| 1418 | # while [ ${iProc} -lt ${num_proc} ] ; do |
---|
| 1419 | # Array containing Station as a number |
---|
| 1420 | # unset proc_stn |
---|
| 1421 | # set +A proc_stn $( grep "iophy_mpi rank ip lon lat $iProc" ${PREFIX}_${Exe_Output} | sed -e "s/iophy_mpi rank ip lon lat //g" | awk ' {print $2}' ) |
---|
| 1422 | # Number of stations produced by processor proc |
---|
| 1423 | # stationLast=${#proc_stn[*]} |
---|
| 1424 | # Proc number on 4 digits |
---|
| 1425 | # j4=${iProc} |
---|
| 1426 | # Init |
---|
| 1427 | # iStation=0 |
---|
| 1428 | # while [ ${iStation} -lt ${stationLast} ] ; do |
---|
| 1429 | # Station number on 3 digits |
---|
| 1430 | # j3=${proc_stn[${iStation}]} |
---|
| 1431 | # Extract station |
---|
[800] | 1432 | # Invert Axis : t,x -> x,t |
---|
[697] | 1433 | # t,pres,x -> x,t,pres |
---|
| 1434 | # So that we can concatenate along x |
---|
| 1435 | # IGCM_sys_ncpdq -a x,time_counter -a x,time_counter,presnivs -d x,$iStation,$iStation ${prefix_invert}_${j4}.nc ${prefix_invert}_stn_${j3}.nc |
---|
| 1436 | # (( iStation = iStation + 1 )) |
---|
| 1437 | # done |
---|
| 1438 | # (( iProc = iProc + 1 )) |
---|
| 1439 | # done |
---|
| 1440 | |
---|
| 1441 | # Concatenate all station along x |
---|
| 1442 | # IGCM_sys_ncrcat ${prefix_invert}_stn_???.nc ${prefix_invert}_xt.nc |
---|
| 1443 | |
---|
| 1444 | # Re-invert file |
---|
| 1445 | # IGCM_sys_ncpdq -a time_counter,x -a time_counter,presnivs,x ${prefix_invert}_xt.nc ${file_out} |
---|
| 1446 | |
---|
| 1447 | # END reordering |
---|
| 1448 | |
---|
| 1449 | IGCM_debug_PopStack "IGCM_sys_rebuild_station" |
---|
| 1450 | } |
---|
| 1451 | |
---|
[657] | 1452 | ############################################################ |
---|
| 1453 | # Activate Running Environnment Variables |
---|
[536] | 1454 | |
---|
[657] | 1455 | function IGCM_sys_activ_variables { |
---|
| 1456 | IGCM_debug_PushStack "IGCM_sys_activ_variables" |
---|
| 1457 | if ( $DEBUG_sys ) ; then |
---|
| 1458 | echo "IGCM_sys_activ_variables" |
---|
| 1459 | fi |
---|
| 1460 | IGCM_debug_PopStack "IGCM_sys_activ_variables" |
---|
[16] | 1461 | } |
---|
| 1462 | |
---|
[657] | 1463 | ############################################################ |
---|
| 1464 | # Desactivate Running Environnment Variables |
---|
[16] | 1465 | |
---|
[657] | 1466 | function IGCM_sys_desactiv_variables { |
---|
| 1467 | IGCM_debug_PushStack "IGCM_sys_desactiv_variables" |
---|
| 1468 | if ( $DEBUG_sys ) ; then |
---|
| 1469 | echo "IGCM_sys_desactiv_variables" |
---|
| 1470 | fi |
---|
| 1471 | IGCM_debug_PopStack "IGCM_sys_desactiv_variables" |
---|
| 1472 | } |
---|
| 1473 | |
---|
| 1474 | ############################################################ |
---|
[800] | 1475 | # Build MPI/OMP scripts run file (dummy function) |
---|
[657] | 1476 | |
---|
| 1477 | function IGCM_sys_build_run_file { |
---|
| 1478 | |
---|
[664] | 1479 | IGCM_debug_Print 3 " dummy function : IGCM_sys_build_run_file " |
---|
[657] | 1480 | |
---|
| 1481 | } |
---|
| 1482 | |
---|
| 1483 | ############################################################ |
---|
| 1484 | # Build MPI/OMP scripts |
---|
| 1485 | function IGCM_sys_build_execution_scripts |
---|
| 1486 | { |
---|
| 1487 | IGCM_debug_PushStack "IGCM_sys_build_execution_scripts" $@ |
---|
| 1488 | if ( $DEBUG_sys ) ; then |
---|
| 1489 | echo "IGCM_sys_build_execution_scripts " $@ |
---|
| 1490 | fi |
---|
| 1491 | typeset nodes listnodes init_node start_num init_exec comp ExeNameIn ExeNameOut |
---|
| 1492 | typeset node_num_current node_current comp_proc_mpi_loc comp_proc_omp_loc |
---|
| 1493 | typeset num_corempi nombre_restant_node nombre_restant_comp |
---|
| 1494 | |
---|
| 1495 | if [ ! -f ${SUBMIT_DIR}/Job_${config_UserChoices_JobName} ] ; then |
---|
| 1496 | IGCM_debug_Exit "IGCM_sys_titane build_execution_scripts : Job_${config_UserChoices_JobName} doesn't exist in SUBMIT_DIR : ${SUBMIT_DIR} " |
---|
| 1497 | fi |
---|
| 1498 | |
---|
| 1499 | if ( ${OK_PARA_MPMD} ) ; then |
---|
| 1500 | |
---|
| 1501 | if [ -f run_file ] ; then |
---|
| 1502 | IGCM_sys_Rm -f run_file |
---|
[16] | 1503 | fi |
---|
[657] | 1504 | touch run_file |
---|
| 1505 | |
---|
| 1506 | if ( ${OK_PARA_OMP} ) ; then |
---|
| 1507 | |
---|
| 1508 | # Hosts treatment |
---|
| 1509 | |
---|
| 1510 | ${HOST_MPIRUN_COMMAND} hostname | sort | uniq > hosts.tmp |
---|
| 1511 | |
---|
| 1512 | i=0 |
---|
| 1513 | rm -f hosts |
---|
| 1514 | IGCM_debug_Print 1 "sys Obelix, Hosts avaible :" |
---|
| 1515 | for nodes in `cat hosts.tmp` ; do |
---|
| 1516 | host[$i]=$nodes |
---|
| 1517 | echo "${host[$i]} slots=1 max_slots=1" >> hosts |
---|
| 1518 | IGCM_debug_Print 1 ${host[$i]} |
---|
| 1519 | i=$((i+1)) |
---|
| 1520 | done |
---|
| 1521 | rm -f hosts.tmp |
---|
| 1522 | |
---|
| 1523 | listnodes=${host[*]} |
---|
| 1524 | |
---|
| 1525 | EXECUTION="${HOST_MPIRUN_COMMAND} -hostfile hosts" |
---|
| 1526 | |
---|
| 1527 | # Initialisation |
---|
| 1528 | |
---|
| 1529 | init_node=y |
---|
| 1530 | node_num_current=0 |
---|
| 1531 | start_num=0 |
---|
| 1532 | init_exec=n |
---|
| 1533 | |
---|
| 1534 | # Test : if oasis is there, we put it at the first position |
---|
| 1535 | |
---|
| 1536 | for comp in ${config_ListOfComponents[*]} ; do |
---|
| 1537 | |
---|
| 1538 | if [ "X${comp}" = "XCPL" ] ; then |
---|
| 1539 | |
---|
| 1540 | eval ExeNameIn=\${config_Executable_${comp}[0]} |
---|
| 1541 | eval ExeNameOut=\${config_Executable_${comp}[1]} |
---|
| 1542 | |
---|
| 1543 | echo "#!/bin/ksh" > script_${ExeNameOut}.ksh |
---|
| 1544 | echo "" >> script_${ExeNameOut}.ksh |
---|
| 1545 | #echo "export KMP_STACKSIZE=3g" >> script_${ExeNameOut}.ksh |
---|
| 1546 | #echo "export KMP_LIBRARY=turnaround" >> script_${ExeNameOut}.ksh |
---|
| 1547 | #echo "export MKL_SERIAL=YES" >> script_${ExeNameOut}.ksh |
---|
| 1548 | echo "./${ExeNameOut} > out_${ExeNameOut}.out 2>out_${ExeNameOut}.err" >> script_${ExeNameOut}.ksh |
---|
| 1549 | IGCM_sys_Chmod u+x script_${ExeNameOut}.ksh |
---|
| 1550 | |
---|
| 1551 | init_node=n |
---|
| 1552 | |
---|
| 1553 | (( nombre_restant_node = NUM_COREPERNODE - 1 )) |
---|
| 1554 | node_num_current=0 |
---|
| 1555 | node_current=${host[${node_num_current}]} |
---|
| 1556 | |
---|
| 1557 | EXECUTION="${EXECUTION} -H ${node_current} -np 1 ./script_${ExeNameOut}.ksh" |
---|
| 1558 | |
---|
| 1559 | init_exec=y |
---|
| 1560 | start_num=1 |
---|
| 1561 | |
---|
| 1562 | fi |
---|
| 1563 | |
---|
| 1564 | done |
---|
| 1565 | |
---|
| 1566 | # Then loop on the components (except for oasis) |
---|
| 1567 | |
---|
| 1568 | for comp in ${config_ListOfComponents[*]} ; do |
---|
| 1569 | |
---|
| 1570 | eval ExeNameIn=\${config_Executable_${comp}[0]} |
---|
| 1571 | eval ExeNameOut=\${config_Executable_${comp}[1]} |
---|
| 1572 | |
---|
| 1573 | # Only if we really have an executable for the component : |
---|
| 1574 | if ( [ "X${ExeNameOut}" != X\"\" ] && [ "X${comp}" != "XCPL" ] ) ; then |
---|
| 1575 | |
---|
| 1576 | eval comp_proc_mpi_loc=\${${comp}_PROC_MPI} |
---|
| 1577 | eval comp_proc_omp_loc=\${${comp}_PROC_OMP} |
---|
| 1578 | |
---|
| 1579 | echo "#!/bin/ksh" > script_${ExeNameOut}.ksh |
---|
| 1580 | # echo "set -vx" >> script_${ExeNameOut}.ksh |
---|
| 1581 | echo "" >> script_${ExeNameOut}.ksh |
---|
| 1582 | #echo "export KMP_STACKSIZE=3g" >> script_${ExeNameOut}.ksh |
---|
| 1583 | #echo "export KMP_LIBRARY=turnaround" >> script_${ExeNameOut}.ksh |
---|
| 1584 | #echo "export MKL_SERIAL=YES" >> script_${ExeNameOut}.ksh |
---|
| 1585 | echo "OMP_NUM_THREADS=${comp_proc_omp_loc}" >> script_${ExeNameOut}.ksh |
---|
| 1586 | echo "(( MYMPIRANK = OMPI_COMM_WORLD_RANK - ${start_num})) " >> script_${ExeNameOut}.ksh |
---|
| 1587 | echo "./${ExeNameOut} > out_${ExeNameOut}.out.\${MYMPIRANK} 2>out_${ExeNameOut}.err.\${MYMPIRANK}" >> script_${ExeNameOut}.ksh |
---|
| 1588 | IGCM_sys_Chmod u+x script_${ExeNameOut}.ksh |
---|
| 1589 | |
---|
| 1590 | node_num=0 |
---|
| 1591 | |
---|
| 1592 | # We define the number of MPI process to be assigned for the component |
---|
| 1593 | |
---|
| 1594 | nombre_restant_comp=${comp_proc_mpi_loc} |
---|
| 1595 | |
---|
| 1596 | # Loop on the allocated nodes |
---|
| 1597 | |
---|
| 1598 | for node in ${listnodes} ; do |
---|
| 1599 | |
---|
| 1600 | # We go to the current node |
---|
| 1601 | if [ ${node_num} = ${node_num_current} ] ; then |
---|
| 1602 | |
---|
| 1603 | node_current=${host[${node_num_current}]} |
---|
| 1604 | |
---|
| 1605 | # If first time on the node : initialisation |
---|
| 1606 | |
---|
| 1607 | if [ ${init_node} = y ] ; then |
---|
| 1608 | nombre_restant_node=${NUM_COREPERNODE} |
---|
| 1609 | fi |
---|
| 1610 | |
---|
| 1611 | # Test on the number of OMP threads |
---|
| 1612 | |
---|
| 1613 | if [ ${comp_proc_omp_loc} -gt ${nombre_restant_node} ] ; then |
---|
| 1614 | (( node_num = node_num + 1 )) |
---|
| 1615 | node_num_current=${node_num} |
---|
| 1616 | init_node=y |
---|
| 1617 | continue |
---|
| 1618 | fi |
---|
| 1619 | |
---|
| 1620 | # Number of MPI process to assign |
---|
| 1621 | |
---|
| 1622 | (( num_corempi = nombre_restant_node / comp_proc_omp_loc )) |
---|
| 1623 | |
---|
| 1624 | if [ ${num_corempi} -gt ${nombre_restant_comp} ] ; then |
---|
| 1625 | num_corempi=${nombre_restant_comp} |
---|
| 1626 | fi |
---|
| 1627 | |
---|
| 1628 | (( nombre_restant_node = nombre_restant_node - num_corempi * comp_proc_omp_loc )) |
---|
| 1629 | (( nombre_restant_comp = nombre_restant_comp - num_corempi )) |
---|
| 1630 | |
---|
| 1631 | if [ ${init_exec} = y ] ; then |
---|
| 1632 | EXECUTION="${EXECUTION} : -H ${node_current} -np ${num_corempi} ./script_${ExeNameOut}.ksh" |
---|
| 1633 | else |
---|
| 1634 | EXECUTION="${EXECUTION} -H ${node_current} -np ${num_corempi} ./script_${ExeNameOut}.ksh" |
---|
| 1635 | init_exec=y |
---|
| 1636 | fi |
---|
| 1637 | |
---|
| 1638 | (( start_num = num_corempi + start_num )) |
---|
| 1639 | |
---|
| 1640 | else |
---|
| 1641 | |
---|
| 1642 | (( node_num = node_num + 1 )) |
---|
| 1643 | continue |
---|
| 1644 | fi |
---|
| 1645 | |
---|
| 1646 | # Test on the number of core/process remaining on the node/component |
---|
| 1647 | |
---|
| 1648 | if [ ${nombre_restant_node} = 0 ] ; then |
---|
| 1649 | (( node_num = node_num + 1 )) |
---|
| 1650 | node_num_current=${node_num} |
---|
| 1651 | init_node=y |
---|
| 1652 | |
---|
| 1653 | if [ ${nombre_restant_comp} = 0 ] ; then |
---|
| 1654 | break 1 |
---|
| 1655 | fi |
---|
| 1656 | else |
---|
| 1657 | |
---|
| 1658 | node_num_current=${node_num} |
---|
| 1659 | init_node=n |
---|
| 1660 | |
---|
| 1661 | if [ ${nombre_restant_comp} = 0 ] ; then |
---|
| 1662 | break 1 |
---|
| 1663 | fi |
---|
| 1664 | fi |
---|
| 1665 | done |
---|
| 1666 | fi |
---|
| 1667 | done |
---|
| 1668 | |
---|
| 1669 | else |
---|
| 1670 | |
---|
[664] | 1671 | # Then first loop on the components for the coupler ie oasis |
---|
[657] | 1672 | |
---|
[664] | 1673 | ## the coupler ie oasis must be the first one |
---|
| 1674 | for comp in ${config_ListOfComponents[*]} ; do |
---|
[657] | 1675 | |
---|
[664] | 1676 | eval ExeNameOut=\${config_Executable_${comp}[1]} |
---|
[657] | 1677 | |
---|
| 1678 | # for CPL component only |
---|
[664] | 1679 | if [ "X${comp}" = "XCPL" ] ; then |
---|
| 1680 | eval comp_proc_mpi_loc=\${${comp}_PROC_MPI} |
---|
| 1681 | echo "-np ${comp_proc_mpi_loc} ./${ExeNameOut} " >> run_file |
---|
| 1682 | fi |
---|
| 1683 | done |
---|
[657] | 1684 | |
---|
| 1685 | # Then second loop on the components |
---|
| 1686 | |
---|
[664] | 1687 | for comp in ${config_ListOfComponents[*]} ; do |
---|
[657] | 1688 | |
---|
[664] | 1689 | eval ExeNameOut=\${config_Executable_${comp}[1]} |
---|
[657] | 1690 | |
---|
[664] | 1691 | # Only if we really have an executable for the component and not the coupler ie oasis: |
---|
| 1692 | if ( [ "X${ExeNameOut}" != X\"\" ] && [ "X${comp}" != "XCPL" ] ) ; then |
---|
| 1693 | eval comp_proc_mpi_loc=\${${comp}_PROC_MPI} |
---|
| 1694 | echo "-np ${comp_proc_mpi_loc} ./${ExeNameOut}" >> run_file |
---|
| 1695 | fi |
---|
| 1696 | done |
---|
| 1697 | IGCM_sys_Chmod u+x run_file |
---|
[657] | 1698 | |
---|
[664] | 1699 | EXECUTION="${HOST_MPIRUN_COMMAND} --app ./run_file" |
---|
[657] | 1700 | |
---|
[16] | 1701 | fi |
---|
| 1702 | |
---|
[657] | 1703 | else # Only one executable. launch it. |
---|
| 1704 | |
---|
[664] | 1705 | for comp in ${config_ListOfComponents[*]} ; do |
---|
[657] | 1706 | |
---|
[664] | 1707 | # Only if we really have an executable for the component : |
---|
| 1708 | eval ExeNameOut=\${config_Executable_${comp}[1]} |
---|
| 1709 | if ( [ "X${ExeNameOut}" != X\"\" ] && [ "X${ExeNameOut}" != "Xinca.dat" ] ) ; then |
---|
[657] | 1710 | |
---|
[664] | 1711 | echo "#!/bin/ksh" > script_${ExeNameOut}.ksh |
---|
| 1712 | echo "" >> script_${ExeNameOut}.ksh |
---|
| 1713 | if ( ${OK_PARA_OMP} ) ; then |
---|
| 1714 | eval comp_proc_omp_loc=\${${comp}_PROC_OMP} |
---|
| 1715 | echo "OMP_NUM_THREADS=${comp_proc_omp_loc}" >> script_${ExeNameOut}.ksh |
---|
| 1716 | fi |
---|
| 1717 | if ( ${OK_PARA_MPI} ) ; then |
---|
| 1718 | # Default : mpirun used if nb_proc gt 1 |
---|
| 1719 | # pour sortie out/err par process |
---|
| 1720 | # echo "./${ExeNameOut} > out_${ExeNameOut}.out.\${OMPI_COMM_WORLD_RANK} 2>out_${ExeNameOut}.err.\${OMPI_COMM_WORLD_RANK}" >> script_${ExeNameOut}.ksh |
---|
| 1721 | echo "./${ExeNameOut}" >> script_${ExeNameOut}.ksh |
---|
| 1722 | IGCM_sys_Chmod u+x script_${ExeNameOut}.ksh |
---|
| 1723 | EXECUTION="${HOST_MPIRUN_COMMAND} ./script_${ExeNameOut}.ksh" |
---|
| 1724 | else |
---|
| 1725 | # Default : mpirun is NOT used if nb_proc eq 1 |
---|
| 1726 | # pour sortie out/err par process |
---|
| 1727 | # echo "./${ExeNameOut} > out_${ExeNameOut}.out 2>out_${ExeNameOut}.err" >> script_${ExeNameOut}.ksh |
---|
| 1728 | echo "./${ExeNameOut}" >> script_${ExeNameOut}.ksh |
---|
| 1729 | IGCM_sys_Chmod u+x script_${ExeNameOut}.ksh |
---|
| 1730 | EXECUTION="time ./script_${ExeNameOut}.ksh" |
---|
| 1731 | fi |
---|
| 1732 | fi |
---|
| 1733 | done |
---|
[657] | 1734 | |
---|
| 1735 | fi |
---|
| 1736 | |
---|
| 1737 | IGCM_debug_Print 1 "sys Obelix : La commande d execution est " |
---|
| 1738 | IGCM_debug_Print 1 $EXECUTION |
---|
| 1739 | |
---|
| 1740 | IGCM_debug_PopStack "IGCM_sys_build_execution_scripts" |
---|
[16] | 1741 | } |
---|
| 1742 | |
---|
[657] | 1743 | ############################################################ |
---|
| 1744 | # Check of space available on temporary filesytems |
---|
| 1745 | function IGCM_sys_check_quota { |
---|
| 1746 | IGCM_debug_PushStack "IGCM_sys_check_quota" |
---|
| 1747 | if ( $DEBUG_sys ) ; then |
---|
| 1748 | echo "IGCM_sys_check_quota" |
---|
| 1749 | fi |
---|
| 1750 | IGCM_debug_PopStack "IGCM_sys_check_quota" |
---|
| 1751 | } |
---|
| 1752 | |
---|
[16] | 1753 | ############################################################## |
---|
| 1754 | # NCO OPERATOR |
---|
| 1755 | |
---|
[377] | 1756 | function IGCM_sys_ncap2 { |
---|
[657] | 1757 | IGCM_debug_PushStack "IGCM_sys_ncap2" -- $@ |
---|
| 1758 | if ( $DEBUG_sys ) ; then |
---|
| 1759 | echo "IGCM_sys_ncap2 :" $@ |
---|
| 1760 | fi |
---|
[714] | 1761 | |
---|
| 1762 | typeset NB_ESSAI DELAI status i |
---|
| 1763 | # number of tentative |
---|
| 1764 | NB_ESSAI=3 |
---|
| 1765 | # time delay between tentative |
---|
| 1766 | DELAI=2 |
---|
| 1767 | |
---|
| 1768 | i=0 |
---|
| 1769 | while [ $i -lt $NB_ESSAI ] ; do |
---|
| 1770 | ncap2 "$@" > out_rsync 2>&1 |
---|
| 1771 | status=$? |
---|
| 1772 | if [ ${status} -gt 0 ] ; then |
---|
| 1773 | IGCM_debug_Print 2 "IGCM_sys_ncap2 : error code ${status}" |
---|
| 1774 | cat out_rsync |
---|
| 1775 | \rm out_rsync |
---|
| 1776 | IGCM_debug_Print 2 "IGCM_sys_ncap2 : ${i}/${NB_ESSAI} sleep ${DELAI} seconds and try again." |
---|
[800] | 1777 | sleep $DELAI |
---|
[714] | 1778 | else |
---|
| 1779 | \rm out_rsync |
---|
| 1780 | break |
---|
| 1781 | fi |
---|
| 1782 | (( i = i + 1 )) |
---|
| 1783 | done |
---|
| 1784 | |
---|
| 1785 | if [ ${status} -gt 0 ] ; then |
---|
| 1786 | echo "IGCM_sys_ncap2 : ncap2 error" |
---|
| 1787 | IGCM_debug_Exit "ncap2" |
---|
[657] | 1788 | fi |
---|
[16] | 1789 | |
---|
[657] | 1790 | IGCM_debug_PopStack "IGCM_sys_ncap2" |
---|
[16] | 1791 | } |
---|
| 1792 | |
---|
[375] | 1793 | function IGCM_sys_ncatted { |
---|
[657] | 1794 | IGCM_debug_PushStack "IGCM_sys_ncatted" -- $@ |
---|
| 1795 | if ( $DEBUG_sys ) ; then |
---|
| 1796 | echo "IGCM_sys_ncatted :" $@ |
---|
| 1797 | fi |
---|
[714] | 1798 | |
---|
| 1799 | typeset NB_ESSAI DELAI status i |
---|
| 1800 | # number of tentative |
---|
| 1801 | NB_ESSAI=3 |
---|
| 1802 | # time delay between tentative |
---|
| 1803 | DELAI=2 |
---|
| 1804 | |
---|
| 1805 | i=0 |
---|
| 1806 | while [ $i -lt $NB_ESSAI ] ; do |
---|
| 1807 | ncatted "$@" > out_rsync 2>&1 |
---|
| 1808 | status=$? |
---|
| 1809 | if [ ${status} -gt 0 ] ; then |
---|
| 1810 | IGCM_debug_Print 2 "IGCM_sys_ncatted : error code ${status}" |
---|
| 1811 | cat out_rsync |
---|
| 1812 | \rm out_rsync |
---|
| 1813 | IGCM_debug_Print 2 "IGCM_sys_ncatted : ${i}/${NB_ESSAI} sleep ${DELAI} seconds and try again." |
---|
[800] | 1814 | sleep $DELAI |
---|
[714] | 1815 | else |
---|
| 1816 | \rm out_rsync |
---|
| 1817 | break |
---|
| 1818 | fi |
---|
| 1819 | (( i = i + 1 )) |
---|
| 1820 | done |
---|
| 1821 | |
---|
| 1822 | if [ ${status} -gt 0 ] ; then |
---|
| 1823 | echo "IGCM_sys_ncatted : ncatted error" |
---|
| 1824 | IGCM_debug_Exit "ncatted" |
---|
[657] | 1825 | fi |
---|
[16] | 1826 | |
---|
[657] | 1827 | IGCM_debug_PopStack "IGCM_sys_ncatted" |
---|
[375] | 1828 | } |
---|
[16] | 1829 | |
---|
| 1830 | function IGCM_sys_ncbo { |
---|
[657] | 1831 | IGCM_debug_PushStack "IGCM_sys_ncbo" -- $@ |
---|
| 1832 | if ( $DEBUG_sys ) ; then |
---|
| 1833 | echo "IGCM_sys_ncbo :" $@ |
---|
| 1834 | fi |
---|
[714] | 1835 | |
---|
| 1836 | typeset NB_ESSAI DELAI status i |
---|
| 1837 | # number of tentative |
---|
| 1838 | NB_ESSAI=3 |
---|
| 1839 | # time delay between tentative |
---|
| 1840 | DELAI=2 |
---|
| 1841 | |
---|
| 1842 | i=0 |
---|
| 1843 | while [ $i -lt $NB_ESSAI ] ; do |
---|
| 1844 | ncbo $@ > out_rsync 2>&1 |
---|
| 1845 | status=$? |
---|
| 1846 | if [ ${status} -gt 0 ] ; then |
---|
| 1847 | IGCM_debug_Print 2 "IGCM_sys_ncbo : error code ${status}" |
---|
| 1848 | cat out_rsync |
---|
| 1849 | \rm out_rsync |
---|
| 1850 | IGCM_debug_Print 2 "IGCM_sys_ncbo : ${i}/${NB_ESSAI} sleep ${DELAI} seconds and try again." |
---|
[800] | 1851 | sleep $DELAI |
---|
[714] | 1852 | else |
---|
| 1853 | \rm out_rsync |
---|
| 1854 | break |
---|
| 1855 | fi |
---|
| 1856 | (( i = i + 1 )) |
---|
| 1857 | done |
---|
| 1858 | |
---|
| 1859 | if [ ${status} -gt 0 ] ; then |
---|
| 1860 | echo "IGCM_sys_ncbo : ncbo error" |
---|
| 1861 | IGCM_debug_Exit "ncbo" |
---|
[657] | 1862 | fi |
---|
[16] | 1863 | |
---|
[657] | 1864 | IGCM_debug_PopStack "IGCM_sys_ncbo" |
---|
[16] | 1865 | } |
---|
| 1866 | |
---|
| 1867 | function IGCM_sys_ncdiff { |
---|
[657] | 1868 | IGCM_debug_PushStack "IGCM_sys_ncdiff" -- $@ |
---|
| 1869 | if ( $DEBUG_sys ) ; then |
---|
| 1870 | echo "IGCM_sys_ncdiff :" $@ |
---|
| 1871 | fi |
---|
[714] | 1872 | |
---|
| 1873 | typeset NB_ESSAI DELAI status i |
---|
| 1874 | # number of tentative |
---|
| 1875 | NB_ESSAI=3 |
---|
| 1876 | # time delay between tentative |
---|
| 1877 | DELAI=2 |
---|
| 1878 | |
---|
| 1879 | i=0 |
---|
| 1880 | while [ $i -lt $NB_ESSAI ] ; do |
---|
| 1881 | ncdiff $@ > out_rsync 2>&1 |
---|
| 1882 | status=$? |
---|
| 1883 | if [ ${status} -gt 0 ] ; then |
---|
| 1884 | IGCM_debug_Print 2 "IGCM_sys_ncdiff : error code ${status}" |
---|
| 1885 | cat out_rsync |
---|
| 1886 | \rm out_rsync |
---|
| 1887 | IGCM_debug_Print 2 "IGCM_sys_ncdiff : ${i}/${NB_ESSAI} sleep ${DELAI} seconds and try again." |
---|
[800] | 1888 | sleep $DELAI |
---|
[714] | 1889 | else |
---|
| 1890 | \rm out_rsync |
---|
| 1891 | break |
---|
| 1892 | fi |
---|
| 1893 | (( i = i + 1 )) |
---|
| 1894 | done |
---|
| 1895 | |
---|
| 1896 | if [ ${status} -gt 0 ] ; then |
---|
| 1897 | echo "IGCM_sys_ncdiff : ncdiff error" |
---|
| 1898 | IGCM_debug_Exit "ncdiff" |
---|
[657] | 1899 | fi |
---|
[16] | 1900 | |
---|
[657] | 1901 | IGCM_debug_PopStack "IGCM_sys_ncdiff" |
---|
[16] | 1902 | } |
---|
| 1903 | |
---|
| 1904 | function IGCM_sys_ncea { |
---|
[657] | 1905 | IGCM_debug_PushStack "IGCM_sys_ncea" -- $@ |
---|
| 1906 | if ( $DEBUG_sys ) ; then |
---|
| 1907 | echo "IGCM_sys_ncea :" $@ |
---|
| 1908 | fi |
---|
[714] | 1909 | |
---|
| 1910 | typeset NB_ESSAI DELAI status i |
---|
| 1911 | # number of tentative |
---|
| 1912 | NB_ESSAI=3 |
---|
| 1913 | # time delay between tentative |
---|
| 1914 | DELAI=2 |
---|
| 1915 | |
---|
| 1916 | i=0 |
---|
| 1917 | while [ $i -lt $NB_ESSAI ] ; do |
---|
| 1918 | ncea $@ > out_rsync 2>&1 |
---|
| 1919 | status=$? |
---|
| 1920 | if [ ${status} -gt 0 ] ; then |
---|
| 1921 | IGCM_debug_Print 2 "IGCM_sys_ncea : error code ${status}" |
---|
| 1922 | cat out_rsync |
---|
| 1923 | \rm out_rsync |
---|
| 1924 | IGCM_debug_Print 2 "IGCM_sys_ncea : ${i}/${NB_ESSAI} sleep ${DELAI} seconds and try again." |
---|
[800] | 1925 | sleep $DELAI |
---|
[714] | 1926 | else |
---|
| 1927 | \rm out_rsync |
---|
| 1928 | break |
---|
| 1929 | fi |
---|
| 1930 | (( i = i + 1 )) |
---|
| 1931 | done |
---|
| 1932 | |
---|
| 1933 | if [ ${status} -gt 0 ] ; then |
---|
| 1934 | echo "IGCM_sys_ncea : ncea error" |
---|
| 1935 | IGCM_debug_Exit "ncea" |
---|
[657] | 1936 | fi |
---|
[16] | 1937 | |
---|
[657] | 1938 | IGCM_debug_PopStack "IGCM_sys_ncea" |
---|
[16] | 1939 | } |
---|
| 1940 | |
---|
| 1941 | function IGCM_sys_ncecat { |
---|
[657] | 1942 | IGCM_debug_PushStack "IGCM_sys_ncecat" -- $@ |
---|
| 1943 | if ( $DEBUG_sys ) ; then |
---|
| 1944 | echo "IGCM_sys_ncecat :" $@ |
---|
| 1945 | fi |
---|
[714] | 1946 | |
---|
| 1947 | typeset NB_ESSAI DELAI status i |
---|
| 1948 | # number of tentative |
---|
| 1949 | NB_ESSAI=3 |
---|
| 1950 | # time delay between tentative |
---|
| 1951 | DELAI=2 |
---|
| 1952 | |
---|
| 1953 | i=0 |
---|
| 1954 | while [ $i -lt $NB_ESSAI ] ; do |
---|
| 1955 | ncecat $@ > out_rsync 2>&1 |
---|
| 1956 | status=$? |
---|
| 1957 | if [ ${status} -gt 0 ] ; then |
---|
| 1958 | IGCM_debug_Print 2 "IGCM_sys_ncecat : error code ${status}" |
---|
| 1959 | cat out_rsync |
---|
| 1960 | \rm out_rsync |
---|
| 1961 | IGCM_debug_Print 2 "IGCM_sys_ncecat : ${i}/${NB_ESSAI} sleep ${DELAI} seconds and try again." |
---|
[800] | 1962 | sleep $DELAI |
---|
[714] | 1963 | else |
---|
| 1964 | \rm out_rsync |
---|
| 1965 | break |
---|
| 1966 | fi |
---|
| 1967 | (( i = i + 1 )) |
---|
| 1968 | done |
---|
| 1969 | |
---|
| 1970 | if [ ${status} -gt 0 ] ; then |
---|
| 1971 | echo "IGCM_sys_ncecat : ncecat error" |
---|
| 1972 | IGCM_debug_Exit "ncecat" |
---|
[657] | 1973 | fi |
---|
[16] | 1974 | |
---|
[657] | 1975 | IGCM_debug_PopStack "IGCM_sys_ncecat" |
---|
[16] | 1976 | } |
---|
| 1977 | |
---|
| 1978 | function IGCM_sys_ncflint { |
---|
[657] | 1979 | IGCM_debug_PushStack "IGCM_sys_ncflint" -- $@ |
---|
| 1980 | if ( $DEBUG_sys ) ; then |
---|
| 1981 | echo "IGCM_sys_ncflint :" $@ |
---|
| 1982 | fi |
---|
[714] | 1983 | |
---|
| 1984 | typeset NB_ESSAI DELAI status i |
---|
| 1985 | # number of tentative |
---|
| 1986 | NB_ESSAI=3 |
---|
| 1987 | # time delay between tentative |
---|
| 1988 | DELAI=2 |
---|
| 1989 | |
---|
| 1990 | i=0 |
---|
| 1991 | while [ $i -lt $NB_ESSAI ] ; do |
---|
| 1992 | ncflint $@ > out_rsync 2>&1 |
---|
| 1993 | status=$? |
---|
| 1994 | if [ ${status} -gt 0 ] ; then |
---|
| 1995 | IGCM_debug_Print 2 "IGCM_sys_ncflint : error code ${status}" |
---|
| 1996 | cat out_rsync |
---|
| 1997 | \rm out_rsync |
---|
| 1998 | IGCM_debug_Print 2 "IGCM_sys_ncflint : ${i}/${NB_ESSAI} sleep ${DELAI} seconds and try again." |
---|
[800] | 1999 | sleep $DELAI |
---|
[714] | 2000 | else |
---|
| 2001 | \rm out_rsync |
---|
| 2002 | break |
---|
| 2003 | fi |
---|
| 2004 | (( i = i + 1 )) |
---|
| 2005 | done |
---|
| 2006 | |
---|
| 2007 | if [ ${status} -gt 0 ] ; then |
---|
| 2008 | echo "IGCM_sys_ncflint : ncflint error" |
---|
| 2009 | IGCM_debug_Exit "ncflint" |
---|
[657] | 2010 | fi |
---|
[16] | 2011 | |
---|
[657] | 2012 | IGCM_debug_PopStack "IGCM_sys_ncflint" |
---|
[16] | 2013 | } |
---|
| 2014 | |
---|
| 2015 | function IGCM_sys_ncks { |
---|
[657] | 2016 | IGCM_debug_PushStack "IGCM_sys_ncks" -- $@ |
---|
| 2017 | if ( $DEBUG_sys ) ; then |
---|
| 2018 | echo "IGCM_sys_ncks :" $@ |
---|
| 2019 | fi |
---|
[714] | 2020 | |
---|
| 2021 | typeset NB_ESSAI DELAI status i |
---|
| 2022 | # number of tentative |
---|
| 2023 | NB_ESSAI=3 |
---|
| 2024 | # time delay between tentative |
---|
| 2025 | DELAI=2 |
---|
| 2026 | |
---|
| 2027 | i=0 |
---|
| 2028 | while [ $i -lt $NB_ESSAI ] ; do |
---|
| 2029 | ncks $@ > out_rsync 2>&1 |
---|
| 2030 | status=$? |
---|
| 2031 | if [ ${status} -gt 0 ] ; then |
---|
| 2032 | IGCM_debug_Print 2 "IGCM_sys_ncks : error code ${status}" |
---|
| 2033 | cat out_rsync |
---|
| 2034 | \rm out_rsync |
---|
| 2035 | IGCM_debug_Print 2 "IGCM_sys_ncks : ${i}/${NB_ESSAI} sleep ${DELAI} seconds and try again." |
---|
[800] | 2036 | sleep $DELAI |
---|
[714] | 2037 | else |
---|
| 2038 | \rm out_rsync |
---|
| 2039 | break |
---|
| 2040 | fi |
---|
| 2041 | (( i = i + 1 )) |
---|
| 2042 | done |
---|
| 2043 | |
---|
| 2044 | if [ ${status} -gt 0 ] ; then |
---|
| 2045 | echo "IGCM_sys_ncks : ncks error" |
---|
| 2046 | IGCM_debug_Exit "ncks" |
---|
[657] | 2047 | fi |
---|
[16] | 2048 | |
---|
[657] | 2049 | IGCM_debug_PopStack "IGCM_sys_ncks" |
---|
[16] | 2050 | } |
---|
| 2051 | |
---|
| 2052 | function IGCM_sys_ncpdq { |
---|
[657] | 2053 | IGCM_debug_PushStack "IGCM_sys_ncpdq" -- $@ |
---|
| 2054 | if ( $DEBUG_sys ) ; then |
---|
| 2055 | echo "IGCM_sys_ncpdq :" $@ |
---|
| 2056 | fi |
---|
[714] | 2057 | |
---|
| 2058 | typeset NB_ESSAI DELAI status i |
---|
| 2059 | # number of tentative |
---|
| 2060 | NB_ESSAI=3 |
---|
| 2061 | # time delay between tentative |
---|
| 2062 | DELAI=2 |
---|
| 2063 | |
---|
| 2064 | i=0 |
---|
| 2065 | while [ $i -lt $NB_ESSAI ] ; do |
---|
| 2066 | ncpdq $@ > out_rsync 2>&1 |
---|
| 2067 | status=$? |
---|
| 2068 | if [ ${status} -gt 0 ] ; then |
---|
| 2069 | IGCM_debug_Print 2 "IGCM_sys_ncpdq : error code ${status}" |
---|
| 2070 | cat out_rsync |
---|
| 2071 | \rm out_rsync |
---|
| 2072 | IGCM_debug_Print 2 "IGCM_sys_ncpdq : ${i}/${NB_ESSAI} sleep ${DELAI} seconds and try again." |
---|
[800] | 2073 | sleep $DELAI |
---|
[714] | 2074 | else |
---|
| 2075 | \rm out_rsync |
---|
| 2076 | break |
---|
| 2077 | fi |
---|
| 2078 | (( i = i + 1 )) |
---|
| 2079 | done |
---|
| 2080 | |
---|
| 2081 | if [ ${status} -gt 0 ] ; then |
---|
| 2082 | echo "IGCM_sys_ncpdq : ncpdq error" |
---|
| 2083 | IGCM_debug_Exit "ncpdq" |
---|
[657] | 2084 | fi |
---|
[16] | 2085 | |
---|
[657] | 2086 | IGCM_debug_PopStack "IGCM_sys_ncpdq" |
---|
[16] | 2087 | } |
---|
| 2088 | |
---|
| 2089 | function IGCM_sys_ncra { |
---|
[657] | 2090 | IGCM_debug_PushStack "IGCM_sys_ncra" -- $@ |
---|
| 2091 | if ( $DEBUG_sys ) ; then |
---|
| 2092 | echo "IGCM_sys_ncra :" $@ |
---|
| 2093 | fi |
---|
[714] | 2094 | |
---|
| 2095 | typeset NB_ESSAI DELAI status i |
---|
| 2096 | # number of tentative |
---|
| 2097 | NB_ESSAI=3 |
---|
| 2098 | # time delay between tentative |
---|
| 2099 | DELAI=2 |
---|
| 2100 | |
---|
| 2101 | i=0 |
---|
| 2102 | while [ $i -lt $NB_ESSAI ] ; do |
---|
| 2103 | ncra $@ > out_rsync 2>&1 |
---|
| 2104 | status=$? |
---|
| 2105 | if [ ${status} -gt 0 ] ; then |
---|
| 2106 | IGCM_debug_Print 2 "IGCM_sys_ncra : error code ${status}" |
---|
| 2107 | cat out_rsync |
---|
| 2108 | \rm out_rsync |
---|
| 2109 | IGCM_debug_Print 2 "IGCM_sys_ncra : ${i}/${NB_ESSAI} sleep ${DELAI} seconds and try again." |
---|
[800] | 2110 | sleep $DELAI |
---|
[714] | 2111 | else |
---|
| 2112 | \rm out_rsync |
---|
| 2113 | break |
---|
| 2114 | fi |
---|
| 2115 | (( i = i + 1 )) |
---|
| 2116 | done |
---|
| 2117 | |
---|
| 2118 | if [ ${status} -gt 0 ] ; then |
---|
| 2119 | echo "IGCM_sys_ncra : ncra error" |
---|
| 2120 | IGCM_debug_Exit "ncra" |
---|
[657] | 2121 | fi |
---|
[16] | 2122 | |
---|
[657] | 2123 | IGCM_debug_PopStack "IGCM_sys_ncra" |
---|
[16] | 2124 | } |
---|
| 2125 | |
---|
| 2126 | function IGCM_sys_ncrcat { |
---|
[657] | 2127 | IGCM_debug_PushStack "IGCM_sys_ncrcat" -- $@ |
---|
| 2128 | if ( $DEBUG_sys ) ; then |
---|
| 2129 | echo "IGCM_sys_ncrcat :" $@ |
---|
| 2130 | fi |
---|
[714] | 2131 | |
---|
| 2132 | typeset NB_ESSAI DELAI status i |
---|
| 2133 | # number of tentative |
---|
| 2134 | NB_ESSAI=3 |
---|
| 2135 | # time delay between tentative |
---|
| 2136 | DELAI=2 |
---|
| 2137 | |
---|
| 2138 | i=0 |
---|
| 2139 | while [ $i -lt $NB_ESSAI ] ; do |
---|
| 2140 | ncrcat $@ > out_rsync 2>&1 |
---|
| 2141 | status=$? |
---|
| 2142 | if [ ${status} -gt 0 ] ; then |
---|
| 2143 | IGCM_debug_Print 2 "IGCM_sys_ncrcat : error code ${status}" |
---|
| 2144 | cat out_rsync |
---|
| 2145 | \rm out_rsync |
---|
| 2146 | IGCM_debug_Print 2 "IGCM_sys_ncrcat : ${i}/${NB_ESSAI} sleep ${DELAI} seconds and try again." |
---|
[800] | 2147 | sleep $DELAI |
---|
[714] | 2148 | else |
---|
| 2149 | \rm out_rsync |
---|
| 2150 | break |
---|
| 2151 | fi |
---|
| 2152 | (( i = i + 1 )) |
---|
| 2153 | done |
---|
| 2154 | |
---|
| 2155 | if [ ${status} -gt 0 ] ; then |
---|
| 2156 | echo "IGCM_sys_ncrcat : ncrcat error" |
---|
| 2157 | #IGCM_debug_Exit "ncrcat" |
---|
[657] | 2158 | fi |
---|
[16] | 2159 | |
---|
[657] | 2160 | IGCM_debug_PopStack "IGCM_sys_ncrcat" |
---|
[16] | 2161 | } |
---|
| 2162 | |
---|
| 2163 | function IGCM_sys_ncrename { |
---|
[657] | 2164 | IGCM_debug_PushStack "IGCM_sys_ncrename" -- $@ |
---|
| 2165 | if ( $DEBUG_sys ) ; then |
---|
| 2166 | echo "IGCM_sys_ncrename :" $@ |
---|
| 2167 | fi |
---|
[714] | 2168 | |
---|
| 2169 | typeset NB_ESSAI DELAI status i |
---|
| 2170 | # number of tentative |
---|
| 2171 | NB_ESSAI=3 |
---|
| 2172 | # time delay between tentative |
---|
| 2173 | DELAI=2 |
---|
| 2174 | |
---|
| 2175 | i=0 |
---|
| 2176 | while [ $i -lt $NB_ESSAI ] ; do |
---|
| 2177 | ncrename $@ > out_rsync 2>&1 |
---|
| 2178 | status=$? |
---|
| 2179 | if [ ${status} -gt 0 ] ; then |
---|
| 2180 | IGCM_debug_Print 2 "IGCM_sys_ncrename : error code ${status}" |
---|
| 2181 | cat out_rsync |
---|
| 2182 | \rm out_rsync |
---|
| 2183 | IGCM_debug_Print 2 "IGCM_sys_ncrename : ${i}/${NB_ESSAI} sleep ${DELAI} seconds and try again." |
---|
[800] | 2184 | sleep $DELAI |
---|
[714] | 2185 | else |
---|
| 2186 | \rm out_rsync |
---|
| 2187 | break |
---|
| 2188 | fi |
---|
| 2189 | (( i = i + 1 )) |
---|
| 2190 | done |
---|
| 2191 | |
---|
| 2192 | if [ ${status} -gt 0 ] ; then |
---|
| 2193 | echo "IGCM_sys_ncrename : ncrename error" |
---|
| 2194 | IGCM_debug_Exit "ncrename" |
---|
[657] | 2195 | fi |
---|
[16] | 2196 | |
---|
[657] | 2197 | IGCM_debug_PopStack "IGCM_sys_ncrename" |
---|
[16] | 2198 | } |
---|
| 2199 | |
---|
| 2200 | function IGCM_sys_ncwa { |
---|
[657] | 2201 | IGCM_debug_PushStack "IGCM_sys_ncwa" -- $@ |
---|
| 2202 | if ( $DEBUG_sys ) ; then |
---|
| 2203 | echo "IGCM_sys_ncwa :" $@ |
---|
| 2204 | fi |
---|
[714] | 2205 | |
---|
| 2206 | typeset NB_ESSAI DELAI status i |
---|
| 2207 | # number of tentative |
---|
| 2208 | NB_ESSAI=3 |
---|
| 2209 | # time delay between tentative |
---|
| 2210 | DELAI=2 |
---|
| 2211 | |
---|
| 2212 | i=0 |
---|
| 2213 | while [ $i -lt $NB_ESSAI ] ; do |
---|
| 2214 | ncwa $@ > out_rsync 2>&1 |
---|
| 2215 | status=$? |
---|
| 2216 | if [ ${status} -gt 0 ] ; then |
---|
| 2217 | IGCM_debug_Print 2 "IGCM_sys_ncwa : error code ${status}" |
---|
| 2218 | cat out_rsync |
---|
| 2219 | \rm out_rsync |
---|
| 2220 | IGCM_debug_Print 2 "IGCM_sys_ncwa : ${i}/${NB_ESSAI} sleep ${DELAI} seconds and try again." |
---|
[800] | 2221 | sleep $DELAI |
---|
[714] | 2222 | else |
---|
| 2223 | \rm out_rsync |
---|
| 2224 | break |
---|
| 2225 | fi |
---|
| 2226 | (( i = i + 1 )) |
---|
| 2227 | done |
---|
| 2228 | |
---|
| 2229 | if [ ${status} -gt 0 ] ; then |
---|
| 2230 | echo "IGCM_sys_ncwa : ncwa error" |
---|
| 2231 | IGCM_debug_Exit "ncwa" |
---|
[657] | 2232 | fi |
---|
[16] | 2233 | |
---|
[657] | 2234 | IGCM_debug_PopStack "IGCM_sys_ncwa" |
---|
[16] | 2235 | } |
---|
| 2236 | |
---|
[284] | 2237 | ############################################################## |
---|
| 2238 | # CDO OPERATOR |
---|
| 2239 | |
---|
| 2240 | function IGCM_sys_cdo { |
---|
[657] | 2241 | IGCM_debug_PushStack "IGCM_sys_cdo" -- $@ |
---|
[714] | 2242 | if ( $DEBUG_sys ) ; then |
---|
| 2243 | echo "IGCM_sys_cdo :" $@ |
---|
| 2244 | fi |
---|
[284] | 2245 | |
---|
[714] | 2246 | typeset status |
---|
| 2247 | |
---|
| 2248 | \cdo $@ > out_rsync 2>&1 |
---|
| 2249 | status=$? |
---|
| 2250 | if [ ${status} -gt 0 ] ; then |
---|
| 2251 | echo "IGCM_sys_cdo : error code ${status}" |
---|
| 2252 | cat out_rsync |
---|
| 2253 | \rm out_rsync |
---|
[284] | 2254 | IGCM_debug_PopStack "IGCM_sys_cdo" |
---|
[657] | 2255 | return 1 |
---|
| 2256 | else |
---|
| 2257 | IGCM_debug_PopStack "IGCM_sys_cdo" |
---|
| 2258 | return 0 |
---|
| 2259 | fi |
---|
[284] | 2260 | |
---|
[657] | 2261 | IGCM_debug_PopStack "IGCM_sys_cdo" |
---|
[16] | 2262 | } |
---|