[222] | 1 | #!/bin/ksh |
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| 2 | |
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| 3 | #************************************************************** |
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[373] | 4 | # Author: Sebastien Denvil, Martial Mancip, Arnaud Caubel |
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| 5 | # Contact: Arnaud.Caubel__at__lsce.ipsl.fr |
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| 6 | # $Revision:: $ Revision of last commit |
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| 7 | # $Author:: $ Author of last commit |
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| 8 | # $Date:: $ Date of last commit |
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[222] | 9 | # IPSL (2006) |
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| 10 | # This software is governed by the CeCILL licence see libIGCM/libIGCM_CeCILL.LIC |
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| 11 | # |
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| 12 | #************************************************************** |
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| 13 | |
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| 14 | #========================================================= |
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| 15 | # The documentation of this file can be automatically generated |
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| 16 | # if you use the prefix #D- for comments to be extracted. |
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| 17 | # Extract with command: cat lib* | grep "^#D-" | cut -c "4-" |
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| 18 | #========================================================= |
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| 19 | |
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| 20 | #D-#================================================== |
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| 21 | #D-LibIGCM_sys for Titane |
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| 22 | #D-#================================================== |
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| 23 | #D- |
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| 24 | #D- This ksh library if a layer under some usefull |
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| 25 | #D-environment variables and shell commands. |
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| 26 | #D-All those definitions depend on host particularities. |
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| 27 | #D-It manages a stack mechanism and test validity of operations. |
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| 28 | #D-All function described bellow must be prefixed by IGCM_sys. |
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| 29 | |
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| 30 | #==================================================== |
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| 31 | # libIGCM_sys PARAMETERS |
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| 32 | #==================================================== |
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| 33 | |
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| 34 | #==================================================== |
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| 35 | # set DEBUG_sys to true to output calls of function |
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| 36 | typeset -r DEBUG_sys=${DEBUG_sys:=true} |
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| 37 | |
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| 38 | #==================================================== |
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| 39 | # Turn in dry run mode ? (sys_Put_Rest, sys_Put_Out, sys_Get) |
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| 40 | typeset -r DRYRUN=${DRYRUN:=0} |
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| 41 | |
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| 42 | # YOU MUST COMPILE YOUR EXE FILES FOR DRYRUN MODE ! |
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| 43 | # ------------------------------------------------------------------------------------- |
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| 44 | # | DRYRUN= | Date computations, | sys_Get | Exe | sys_Put_Out; sys_Put_Rest | |
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| 45 | # | | Cp/Exe param files | | Chmod | | |
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| 46 | # | | Qsub | | | | |
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| 47 | # ------------------------------------------------------------------------------------- |
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| 48 | # | 0 | yes | yes | yes | yes | |
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| 49 | # ------------------------------------------------------------------------------------- |
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| 50 | # | 1 | yes | yes | yes | no | |
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| 51 | # ------------------------------------------------------------------------------------- |
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| 52 | # | 2 | yes | yes | no | no | |
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| 53 | # ------------------------------------------------------------------------------------- |
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| 54 | # | 3 | yes | no | no | no | |
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| 55 | # ------------------------------------------------------------------------------------- |
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| 56 | |
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| 57 | #===================================================== |
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| 58 | # Global Variables : |
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| 59 | #===================================================== |
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| 60 | # Language : "fr" or "en" |
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| 61 | typeset -r MYLANG="fr" |
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| 62 | |
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| 63 | #===================================================== |
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[245] | 64 | # Host and user names |
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| 65 | # $hostname ou hostname |
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| 66 | typeset HOST=${HOST:=$( hostname )} |
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[222] | 67 | # $username ou whoami |
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[245] | 68 | typeset LOGIN=${LOGIN:=$( whoami )} |
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[222] | 69 | # $hostname of the MASTER job |
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| 70 | typeset MASTER=titane |
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| 71 | |
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| 72 | #D- |
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| 73 | #D-#================================================== |
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| 74 | #D-Program used in libIGCM |
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| 75 | #D-#================================================== |
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| 76 | |
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| 77 | # rsync with path |
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| 78 | typeset -r RSYNC=/usr/bin/rsync |
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| 79 | # RSYNC_opt args to rsync |
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| 80 | typeset -r RSYNC_opt="-va" |
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| 81 | # ie storage filesystem |
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| 82 | typeset -r RHOST=titane |
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| 83 | |
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| 84 | #==================================================== |
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[305] | 85 | # Set environment tools (ferret, nco, cdo) |
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| 86 | #==================================================== |
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[222] | 87 | #. /home/cont003/p86ipsl/.atlas_env_titane_ksh |
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| 88 | |
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| 89 | #==================================================== |
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| 90 | # Specific for ocean additionnal diagnostic |
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| 91 | #export FER_GO="$FER_GO /home/cont003/p86denv/IGCM_POST_UTIL/JNL /home/cont003/p86denv/GRAF /home/cont003/p86denv/GRAF/GO" |
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| 92 | #export FER_PALETTE="$FER_PALETTE /home/cont003/p86denv/GRAF/PALET" |
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| 93 | |
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| 94 | #==================================================== |
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| 95 | # Host specific DIRECTORIES |
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| 96 | #==================================================== |
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| 97 | |
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| 98 | #==================================================== |
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| 99 | #- R_EXE (==> BIN_DIR = ${MODIPSL}/bin ) |
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| 100 | typeset -r R_EXE="${MODIPSL}/bin" |
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| 101 | |
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| 102 | #==================================================== |
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| 103 | #- SUBMIT_DIR : submission dir |
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| 104 | typeset SUBMIT_DIR=${SUBMIT_DIR:=${PWD}} |
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| 105 | |
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| 106 | #==================================================== |
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| 107 | #- ARCHIVE |
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| 108 | typeset -r ARCHIVE=${DMFDIR} |
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| 109 | |
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| 110 | #==================================================== |
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| 111 | #- Mirror libIGCM from titane to cesium if needed |
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| 112 | ROOTSYS=$( echo ${libIGCM} | gawk -F"/" '{print $2}' ) |
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| 113 | if [ ! ${ROOTSYS} = "home" ] ; then |
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| 114 | typeset -r MirrorlibIGCM=${MirrorlibIGCM:=true} |
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| 115 | else |
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| 116 | typeset -r MirrorlibIGCM=${MirrorlibIGCM:=false} |
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| 117 | fi |
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| 118 | |
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| 119 | #==================================================== |
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| 120 | #- libIGCM_POST |
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| 121 | if ( ${MirrorlibIGCM} ) ; then |
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| 122 | PATHlibIGCM=$( echo ${libIGCM} | gawk -F"${LOGIN}/" '{print $2}' | sed -e "s&/libIGCM&&" ) |
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| 123 | typeset -r libIGCM_POST=${HOME}/MIRROR/${PATHlibIGCM}/libIGCM |
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| 124 | else |
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| 125 | typeset -r libIGCM_POST=${libIGCM} |
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| 126 | fi |
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| 127 | |
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| 128 | #==================================================== |
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| 129 | #- IN |
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| 130 | typeset -r R_IN=${R_IN:=/dmnfs/cont003/p86ipsl/IGCM} |
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[438] | 131 | typeset -r R_IN_ECMWF=${R_IN_ECMWF:=/dmnfs/cont003/p24data} |
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[222] | 132 | |
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| 133 | #==================================================== |
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| 134 | #- OUT |
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| 135 | typeset -r R_OUT=${ARCHIVE}/IGCM_OUT |
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| 136 | |
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| 137 | #==================================================== |
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| 138 | #- OUT_SCR (ONLY FOR double copy an scratch) |
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| 139 | typeset -r R_OUT_SCR=${SCRATCHDIR}/IGCM_OUT |
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| 140 | |
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| 141 | #==================================================== |
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| 142 | #- OUT_POST |
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| 143 | typeset -r R_OUT_POST=${SCRATCHDIR}/IGCM_OUT |
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| 144 | |
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| 145 | #==================================================== |
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| 146 | #- RUN_DIR_PATH : Temporary working directory (=> TMP) |
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| 147 | typeset RUN_DIR_PATH=${RUN_DIR_PATH:=${SCRATCHDIR}} |
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| 148 | |
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| 149 | #==================================================== |
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| 150 | #- BIG_DIR : BIG_DIR to store files waiting for rebuild |
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| 151 | typeset -r BIG_DIR=${BIG_DIR:=${SCRATCHDIR}/REBUILD} |
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| 152 | |
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| 153 | #==================================================== |
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| 154 | #- HOST_MPIRUN_COMMAND |
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| 155 | typeset -r HOST_MPIRUN_COMMAND=${HOST_MPIRUN_COMMAND:="time mpirun"} |
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| 156 | |
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| 157 | #==================================================== |
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| 158 | #- Max number of arguments passed to nco operator or demigration command |
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| 159 | UNIX_MAX_LIMIT=360 |
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| 160 | |
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| 161 | #D-#================================================== |
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| 162 | #D-function IGCM_sys_RshMaster |
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| 163 | #D-* Purpose: Just a fake command to wrapp |
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| 164 | #D- IGCM_card call in post-treatment |
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| 165 | #D- Ulam do not see brodie filesystem |
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| 166 | #D- Cesium do not see all mercure filesystem |
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| 167 | #D- That's why we need this hack. |
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| 168 | #D-* Examples: |
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| 169 | #D- |
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| 170 | function IGCM_sys_RshMaster { |
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| 171 | IGCM_debug_PushStack "IGCM_sys_RshMaster" $@ |
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| 172 | /bin/ksh <<-EOF |
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| 173 | export libIGCM=${libIGCM} |
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| 174 | export DEBUG_debug=${DEBUG_debug} |
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| 175 | . ${libIGCM}/libIGCM_debug/libIGCM_debug.ksh |
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| 176 | . ${libIGCM}/libIGCM_card/libIGCM_card.ksh |
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| 177 | ${@} |
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| 178 | EOF |
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| 179 | if [ $? -gt 0 ] ; then |
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| 180 | echo "IGCM_sys_RshMaster : erreur." |
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| 181 | IGCM_debug_Exit "IGCM_sys_RshMaster" |
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| 182 | fi |
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| 183 | IGCM_debug_PopStack "IGCM_sys_RshMaster" |
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| 184 | } |
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| 185 | |
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| 186 | #D-#================================================== |
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| 187 | #D-function IGCM_sys_RshArchive |
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| 188 | #D-* Purpose: Archive rsh command |
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| 189 | #D-* Examples: |
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| 190 | #D- |
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| 191 | function IGCM_sys_RshArchive { |
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| 192 | IGCM_debug_PushStack "IGCM_sys_RshArchive" $@ |
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| 193 | /bin/ksh <<-EOF |
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| 194 | ${@} |
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| 195 | EOF |
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| 196 | if [ $? -gt 0 ] ; then |
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| 197 | echo "IGCM_sys_RshArchive : erreur." |
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| 198 | IGCM_debug_Exit "IGCM_sys_RshArchive" |
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| 199 | fi |
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| 200 | IGCM_debug_PopStack "IGCM_sys_RshArchive" |
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| 201 | } |
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| 202 | |
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| 203 | #D-#================================================== |
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| 204 | #D-function IGCM_sys_RshPost |
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| 205 | #D-* Purpose: Post-process rsh command |
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| 206 | #D-* Examples: |
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| 207 | #D- |
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| 208 | function IGCM_sys_RshPost { |
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| 209 | IGCM_debug_PushStack "IGCM_sys_RshPost" $@ |
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| 210 | if ( $DEBUG_sys ) ; then |
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| 211 | echo "IGCM_sys_RshPost :" $@ |
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| 212 | fi |
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[324] | 213 | |
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[364] | 214 | typeset NB_ESSAI DELAI status i |
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[324] | 215 | # keep standard input for the loop onto temporary file |
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| 216 | cat >tmp_IGCM_sys_RshPost_$$ |
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| 217 | # number of tentative |
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| 218 | NB_ESSAI=10 |
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| 219 | # time delay between tentative |
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[222] | 220 | DELAI=10 |
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| 221 | i=0 |
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| 222 | while [ $i -ne $NB_ESSAI ] ; do |
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[324] | 223 | ssh -t titane996 ssh cesium /bin/ksh <tmp_IGCM_sys_RshPost_$$ |
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[222] | 224 | status=$? |
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| 225 | if [ ${status} -ne 0 ]; |
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| 226 | then |
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| 227 | sleep $DELAI |
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| 228 | else |
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| 229 | break |
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| 230 | fi |
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| 231 | let i=$i+1 |
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[324] | 232 | done |
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| 233 | # delete temporary file |
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| 234 | /bin/rm tmp_IGCM_sys_RshPost_$$ |
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[222] | 235 | |
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| 236 | if [ ${status} -gt 0 ] ; then |
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| 237 | echo "IGCM_sys_RshPost : erreur." |
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| 238 | IGCM_debug_Exit "IGCM_sys_RshPost" |
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| 239 | fi |
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| 240 | IGCM_debug_PopStack "IGCM_sys_RshPost" |
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| 241 | } |
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| 242 | |
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| 243 | #D-#================================================== |
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| 244 | #D-function IGCM_sys_SendMail |
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| 245 | #D-* Purpose: Send mail when simulation is over |
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| 246 | #D-* Examples: |
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| 247 | #D- |
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| 248 | function IGCM_sys_SendMail { |
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[409] | 249 | IGCM_debug_PushStack "IGCM_sys_SendMail" $@ |
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[222] | 250 | if ( $DEBUG_sys ) ; then |
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| 251 | echo "IGCM_sys_SendMail :" $@ |
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| 252 | fi |
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| 253 | |
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[437] | 254 | if ( ${ExitFlag} ) ; then |
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| 255 | status=FAILED |
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| 256 | # Nothing more at this point of time |
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| 257 | else |
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| 258 | status=COMPLETED |
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| 259 | IGCM_sys_RshPost <<-EOF |
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[222] | 260 | export LOGIN=${LOGIN} |
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| 261 | export config_UserChoices_JobName=${config_UserChoices_JobName} |
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| 262 | export config_UserChoices_MailName=${config_UserChoices_MailName} |
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| 263 | export DateBegin=${DateBegin} |
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| 264 | export DateEnd=${DateEnd} |
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| 265 | export R_SAVE=${R_SAVE} |
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[288] | 266 | export SUBMIT_DIR=${SUBMIT_DIR} |
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[222] | 267 | |
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| 268 | cat << END_MAIL > job_end.mail |
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| 269 | Dear ${LOGIN}, |
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| 270 | |
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| 271 | Simulation ${config_UserChoices_JobName} is finished on supercomputer `hostname`. |
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| 272 | Job started : ${DateBegin} |
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| 273 | Job ended : ${DateEnd} |
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[434] | 274 | Output files are available in ${R_SAVE} |
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[288] | 275 | Script files and Script Outputs are available in ${SUBMIT_DIR} |
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[222] | 276 | END_MAIL |
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| 277 | |
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| 278 | if [ ! -z ${config_UserChoices_MailName} ] ; then |
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| 279 | mailx -s "${config_UserChoices_JobName} completed" ${config_UserChoices_MailName} < job_end.mail |
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| 280 | elif [ -f ~/.forward ] ; then |
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| 281 | mailx -s "${config_UserChoices_JobName} completed" $( cat ~/.forward ) < job_end.mail |
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| 282 | fi |
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| 283 | |
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| 284 | sleep 10 |
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| 285 | rm -f job_end.mail |
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| 286 | EOF |
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[437] | 287 | fi |
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[222] | 288 | |
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| 289 | if [ $? -gt 0 ] ; then |
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| 290 | echo "IGCM_sys_SendMail : erreur." |
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| 291 | IGCM_debug_Exit "IGCM_sys_SendMail" |
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| 292 | fi |
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| 293 | IGCM_debug_PopStack "IGCM_sys_SendMail" |
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| 294 | } |
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| 295 | |
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| 296 | #D-#================================================== |
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| 297 | #D-function IGCM_sys_Mkdir |
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| 298 | #D-* Purpose: Master locale mkdir command |
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| 299 | #D-* Examples: |
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| 300 | #D- |
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| 301 | function IGCM_sys_Mkdir { |
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| 302 | IGCM_debug_PushStack "IGCM_sys_Mkdir" $@ |
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| 303 | if ( $DEBUG_sys ) ; then |
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| 304 | echo "IGCM_sys_Mkdir :" $@ |
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| 305 | fi |
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| 306 | if [ ! -d ${1} ]; then |
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| 307 | \mkdir -p $1 |
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| 308 | if [ $? -gt 0 ] ; then |
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| 309 | echo "IGCM_sys_Mkdir : erreur." |
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| 310 | IGCM_debug_Exit "IGCM_sys_Mkdir" |
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| 311 | fi |
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| 312 | fi |
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| 313 | # vérification : |
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| 314 | if [ ! -d ${1} ] ; then |
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| 315 | echo "IGCM_sys_Mkdir : erreur." |
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| 316 | IGCM_debug_Exit "IGCM_sys_Mkdir" |
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| 317 | fi |
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| 318 | IGCM_debug_PopStack "IGCM_sys_Mkdir" |
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| 319 | } |
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| 320 | |
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| 321 | #D-#================================================== |
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| 322 | #D-function IGCM_sys_MkdirArchive |
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| 323 | #D-* Purpose: Mkdir on Archive |
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| 324 | #D-* Examples: |
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| 325 | #D- |
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| 326 | function IGCM_sys_MkdirArchive { |
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| 327 | IGCM_debug_PushStack "IGCM_sys_MkdirArchive" $@ |
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| 328 | if ( $DEBUG_sys ) ; then |
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| 329 | echo "IGCM_sys_MkdirArchive :" $@ |
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| 330 | fi |
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| 331 | #- creation de repertoire sur le serveur fichier |
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| 332 | if [ ! -d ${1} ]; then |
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| 333 | \mkdir -p $1 |
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| 334 | if [ $? -gt 0 ] ; then |
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| 335 | echo "IGCM_sys_MkdirArchive : erreur." |
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| 336 | IGCM_debug_Exit "IGCM_sys_MkdirArchive" |
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| 337 | fi |
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| 338 | fi |
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| 339 | IGCM_debug_PopStack "IGCM_sys_MkdirArchive" |
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| 340 | } |
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| 341 | |
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| 342 | #D-#================================================== |
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| 343 | #D-function IGCM_sys_MkdirWork |
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| 344 | #D-* Purpose: Mkdir on Work |
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| 345 | #D-* Examples: |
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| 346 | #D- |
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| 347 | function IGCM_sys_MkdirWork { |
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| 348 | IGCM_debug_PushStack "IGCM_sys_MkdirWork" $@ |
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| 349 | if ( $DEBUG_sys ) ; then |
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| 350 | echo "IGCM_sys_MkdirWork :" $@ |
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| 351 | fi |
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| 352 | #- creation de repertoire sur le serveur fichier |
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| 353 | if [ ! -d ${1} ]; then |
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| 354 | \mkdir -p $1 |
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| 355 | if [ $? -gt 0 ] ; then |
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| 356 | echo "IGCM_sys_MkdirWork : erreur." |
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| 357 | IGCM_debug_Exit "IGCM_sys_MkdirWork" |
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| 358 | fi |
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| 359 | fi |
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| 360 | IGCM_debug_PopStack "IGCM_sys_MkdirWork" |
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| 361 | } |
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| 362 | |
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| 363 | #D-#================================================== |
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| 364 | #D-function IGCM_sys_Cd |
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| 365 | #D-* Purpose: master cd command |
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| 366 | #D-* Examples: |
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| 367 | #D- |
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| 368 | function IGCM_sys_Cd { |
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| 369 | IGCM_debug_PushStack "IGCM_sys_Cd" $@ |
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| 370 | if ( $DEBUG_sys ) ; then |
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| 371 | echo "IGCM_sys_Cd :" $@ |
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| 372 | fi |
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| 373 | \cd $1 |
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| 374 | if [ $? -gt 0 ] ; then |
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| 375 | echo "IGCM_sys_Cd : erreur." |
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| 376 | IGCM_debug_Exit "IGCM_sys_Cd" |
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| 377 | fi |
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| 378 | IGCM_debug_PopStack "IGCM_sys_Cd" |
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| 379 | } |
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| 380 | |
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| 381 | #D-#================================================== |
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| 382 | #D-function IGCM_sys_Chmod |
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| 383 | #D-* Purpose: Chmod |
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| 384 | #D-* Examples: |
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| 385 | #D- |
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| 386 | function IGCM_sys_Chmod { |
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| 387 | IGCM_debug_PushStack "IGCM_sys_Chmod" -- $@ |
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| 388 | if ( $DEBUG_sys ) ; then |
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| 389 | echo "IGCM_sys_Chmod :" $@ |
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| 390 | fi |
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| 391 | if [ $DRYRUN -le 1 ]; then |
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| 392 | \chmod $@ |
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| 393 | if [ $? -gt 0 ] ; then |
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| 394 | echo "IGCM_sys_Chmod : erreur." |
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| 395 | IGCM_debug_Exit "IGCM_sys_Chmod" |
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| 396 | fi |
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| 397 | else |
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| 398 | ( ${DEBUG_debug} ) && echo "DRYRUN mode = " $DRYRUN >> stack |
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| 399 | fi |
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| 400 | IGCM_debug_PopStack "IGCM_sys_Chmod" |
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| 401 | } |
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| 402 | |
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| 403 | #D-#================================================== |
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| 404 | #D-function IGCM_sys_FileSize |
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| 405 | #D-* Purpose: Filesize |
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| 406 | #D-* Examples: |
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| 407 | #D- |
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| 408 | function IGCM_sys_FileSize { |
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| 409 | IGCM_debug_PushStack "IGCM_sys_FileSize" $@ |
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| 410 | |
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| 411 | typeset sizeF |
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| 412 | set +A sizeF -- $( ls -la ${1} ) |
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| 413 | if [ $? -gt 0 ] ; then |
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| 414 | IGCM_debug_Exit "IGCM_sys_FileSize" |
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| 415 | fi |
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| 416 | eval ${2}=${sizeF[4]} |
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| 417 | |
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| 418 | IGCM_debug_PopStack "IGCM_sys_FileSize" |
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| 419 | } |
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| 420 | |
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| 421 | #D-#================================================== |
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| 422 | #D-function IGCM_sys_TestDir |
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| 423 | #D-* Purpose: Test Directory that must exists |
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| 424 | #D-* Examples: |
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| 425 | #D- |
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| 426 | function IGCM_sys_TestDir { |
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| 427 | IGCM_debug_PushStack "IGCM_sys_TestDir" $@ |
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| 428 | if ( $DEBUG_sys ) ; then |
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| 429 | echo "IGCM_sys_TestDir :" $@ |
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| 430 | fi |
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| 431 | typeset ExistFlag |
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| 432 | ExistFlag=$( [ -d $1 ] && echo 0 || echo 1 ) |
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| 433 | IGCM_debug_PopStack "IGCM_sys_TestDir" |
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| 434 | |
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| 435 | return ${ExistFlag} |
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| 436 | } |
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| 437 | |
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| 438 | #D-#================================================== |
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| 439 | #D-function IGCM_sys_TestDirArchive |
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| 440 | #D-* Purpose: Test Directory that must exists on Archive |
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| 441 | #D-* Examples: |
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| 442 | #D- |
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| 443 | function IGCM_sys_TestDirArchive { |
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| 444 | IGCM_debug_PushStack "IGCM_sys_TestDirArchive" $@ |
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| 445 | if ( $DEBUG_sys ) ; then |
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| 446 | echo "IGCM_sys_TestDirArchive :" $@ |
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| 447 | fi |
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| 448 | typeset ExistFlag |
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| 449 | ExistFlag=$( [ -d $1 ] && echo 0 || echo 1 ) |
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| 450 | IGCM_debug_PopStack "IGCM_sys_TestDirArchive" |
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| 451 | |
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| 452 | return ${ExistFlag} |
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| 453 | } |
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| 454 | |
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| 455 | #D-#================================================== |
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| 456 | #D-function IGCM_sys_TestFileArchive |
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| 457 | #D-* Purpose: Test file that must NOT EXISTS on Archive |
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| 458 | #D-* Examples: |
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| 459 | #D- |
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| 460 | function IGCM_sys_TestFileArchive { |
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| 461 | IGCM_debug_PushStack "IGCM_sys_TestFileArchive" $@ |
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| 462 | typeset ExistFlag |
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| 463 | ExistFlag=$( [ -f $1 ] && echo 0 || echo 1 ) |
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| 464 | IGCM_debug_PopStack "IGCM_sys_TestFileArchive" |
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| 465 | |
---|
| 466 | return ${ExistFlag} |
---|
| 467 | } |
---|
| 468 | |
---|
| 469 | #D-#================================================== |
---|
| 470 | #D-function IGCM_sys_CountFileArchive |
---|
| 471 | #D-* Purpose: Count files on Archive filesystem |
---|
| 472 | #D-* Examples: |
---|
| 473 | #D- |
---|
| 474 | function IGCM_sys_CountFileArchive { |
---|
| 475 | IGCM_debug_PushStack "IGCM_sys_CountFileArchive" $@ |
---|
| 476 | ls ${@} 2>/dev/null | wc -l |
---|
| 477 | if [ $? -gt 0 ] ; then |
---|
| 478 | echo "IGCM_sys_CountFileArchive : erreur." |
---|
| 479 | fi |
---|
| 480 | IGCM_debug_PopStack "IGCM_sys_CountFileArchive" |
---|
| 481 | } |
---|
| 482 | |
---|
| 483 | #D-#================================================== |
---|
| 484 | #D-function IGCM_sys_Tree |
---|
| 485 | #D-* Purpose: Tree directories with files on ${ARCHIVE} |
---|
| 486 | #D-* Examples: IGCM_sys_Tree ${R_IN} ${R_OUT} |
---|
| 487 | #D- |
---|
| 488 | function IGCM_sys_Tree { |
---|
| 489 | IGCM_debug_PushStack "IGCM_sys_Tree" $@ |
---|
| 490 | if ( $DEBUG_sys ) ; then |
---|
| 491 | echo "IGCM_sys_Tree :" $@ |
---|
| 492 | fi |
---|
| 493 | |
---|
| 494 | \ls -lR ${@} |
---|
| 495 | |
---|
| 496 | IGCM_debug_PopStack "IGCM_sys_Tree" |
---|
| 497 | } |
---|
| 498 | |
---|
| 499 | #D-#================================================== |
---|
| 500 | #D-function IGCM_sys_Tar |
---|
| 501 | #D-* Purpose: master un-tar command |
---|
| 502 | #D-* Examples: |
---|
| 503 | #D- |
---|
| 504 | function IGCM_sys_Tar { |
---|
| 505 | IGCM_debug_PushStack "IGCM_sys_Tar" $@ |
---|
| 506 | if ( $DEBUG_sys ) ; then |
---|
| 507 | echo "IGCM_sys_Tar :" $@ |
---|
| 508 | fi |
---|
| 509 | \tar xvf $1 |
---|
| 510 | if [ $? -gt 0 ] ; then |
---|
| 511 | echo "IGCM_sys_Tar : erreur." |
---|
| 512 | IGCM_debug_Exit "IGCM_sys_Tar" |
---|
| 513 | fi |
---|
| 514 | IGCM_debug_PopStack "IGCM_sys_Tar" |
---|
| 515 | } |
---|
| 516 | |
---|
| 517 | #D-#================================================== |
---|
| 518 | #D-function IGCM_sys_UnTar |
---|
| 519 | #D-* Purpose: master un-tar command |
---|
| 520 | #D-* Examples: |
---|
| 521 | #D- |
---|
| 522 | function IGCM_sys_UnTar { |
---|
| 523 | IGCM_debug_PushStack "IGCM_sys_UnTar" $@ |
---|
| 524 | if ( $DEBUG_sys ) ; then |
---|
| 525 | echo "IGCM_sys_UnTar :" $@ |
---|
| 526 | fi |
---|
| 527 | \tar xvf $1 |
---|
| 528 | if [ $? -gt 0 ] ; then |
---|
| 529 | echo "IGCM_sys_UnTar : erreur." |
---|
| 530 | IGCM_debug_Exit "IGCM_sys_UnTar" |
---|
| 531 | fi |
---|
| 532 | IGCM_debug_PopStack "IGCM_sys_UnTar" |
---|
| 533 | } |
---|
| 534 | |
---|
| 535 | #D-#================================================== |
---|
| 536 | #D-function IGCM_sys_Qsub |
---|
| 537 | #D-* Purpose: Qsub new job |
---|
| 538 | #D-* Examples: |
---|
| 539 | #D- |
---|
| 540 | function IGCM_sys_Qsub { |
---|
| 541 | IGCM_debug_PushStack "IGCM_sys_Qsub" $@ |
---|
| 542 | if ( $DEBUG_sys ) ; then |
---|
| 543 | echo "IGCM_sys_Qsub :" $@ |
---|
| 544 | fi |
---|
| 545 | /usr/local/bin/ccc_msub -o ${Script_Output} -r ${config_UserChoices_JobName}.${CumulPeriod} < $1 |
---|
| 546 | if [ $? -gt 0 ] ; then |
---|
| 547 | echo "IGCM_sys_Qsub : erreur " $@ |
---|
| 548 | IGCM_debug_Exit "IGCM_sys_Qsub" |
---|
| 549 | fi |
---|
| 550 | IGCM_debug_PopStack "IGCM_sys_Qsub" |
---|
| 551 | } |
---|
| 552 | |
---|
| 553 | #D-#================================================== |
---|
| 554 | #D-function IGCM_sys_QsubPost |
---|
| 555 | #D-* Purpose: Qsub new job on scalaire |
---|
| 556 | #D-* Examples: |
---|
| 557 | #D- |
---|
| 558 | function IGCM_sys_QsubPost { |
---|
| 559 | IGCM_debug_PushStack "IGCM_sys_QsubPost" $@ |
---|
| 560 | if ( $DEBUG_sys ) ; then |
---|
| 561 | echo "IGCM_sys_QsubPost :" $@ |
---|
| 562 | fi |
---|
[387] | 563 | /usr/local/bin/ccc_msub -o ${POST_DIR}/${Script_Post_Output}.out -e ${POST_DIR}/${Script_Post_Output}.e.out -E "-v ${listVarEnv}" ${libIGCM_POST}/$1.job |
---|
[222] | 564 | if [ $? -gt 0 ] ; then |
---|
| 565 | echo "IGCM_sys_QsubPost : erreur " $@ |
---|
| 566 | IGCM_debug_Exit "IGCM_sys_QsubPost" |
---|
| 567 | fi |
---|
| 568 | IGCM_debug_PopStack "IGCM_sys_QsubPost" |
---|
| 569 | } |
---|
| 570 | |
---|
| 571 | #D-************************* |
---|
| 572 | #D- File transfer functions |
---|
| 573 | #D-************************* |
---|
| 574 | #D- |
---|
| 575 | |
---|
| 576 | #D-#================================================== |
---|
| 577 | #D-function IGCM_sys_Rsync_out |
---|
| 578 | #D-* Purpose: treat return val of rsync |
---|
| 579 | #D-* Examples: IGCM_sys_Rsync_out out_RET_rsync |
---|
| 580 | #D- Error values and explanations can depend on your system version. |
---|
| 581 | function IGCM_sys_Rsync_out { |
---|
| 582 | RET=$1 |
---|
| 583 | if [ ! $RET ] ; then |
---|
| 584 | echo "rsync error !" |
---|
| 585 | fi |
---|
| 586 | |
---|
| 587 | if [ $MYLANG = "fr" ]; then |
---|
| 588 | case $RET in |
---|
| 589 | 0) return ;; |
---|
| 590 | 1) echo "Erreur de rsync ; RERR_SYNTAX : " |
---|
| 591 | echo "Erreur de syntaxe ou d'utilisation." |
---|
| 592 | return;; |
---|
| 593 | 2) echo "Erreur de rsync ; RERR_PROTOCOL : " |
---|
| 594 | echo "Incompatibilité de protocole." |
---|
| 595 | return;; |
---|
| 596 | 3) echo "Erreur de rsync ; RERR_FILESELECT 3" |
---|
| 597 | echo "Erreurs lors de la sélection des fichiers d'entrée sortie et" |
---|
| 598 | echo "répertoires" |
---|
| 599 | return;; |
---|
| 600 | 4) echo "Erreur de rsync ; RERR_UNSUPPORTED" |
---|
| 601 | echo "Action demandée non supportée : une tentative de manipulation de" |
---|
| 602 | echo "fichiers 64-bits sur une plate-forme qui ne les supporte pas a" |
---|
| 603 | echo "été faite ; ou une option qui est supportée par le client mais" |
---|
| 604 | echo "pas par le serveur a été spécifiée." |
---|
| 605 | return;; |
---|
| 606 | 10) echo "Erreur de rsync ; RERR_SOCKETIO" |
---|
| 607 | echo "Erreur dans le socket d'entrée sortie" |
---|
| 608 | return;; |
---|
| 609 | 11) echo "Erreur de rsync ; RERR_FILEIO" |
---|
| 610 | echo "Erreur d'entrée sortie fichier" |
---|
| 611 | return;; |
---|
| 612 | 12) echo "Erreur de rsync ; RERR_STREAMIO" |
---|
| 613 | echo "Erreur dans flux de donnée du protocole rsync" |
---|
| 614 | return;; |
---|
| 615 | 13) echo "Erreur de rsync ; RERR_MESSAGEIO" |
---|
| 616 | echo "Erreur avec les diagnostics du programme" |
---|
| 617 | return;; |
---|
| 618 | 14) echo "Erreur de rsync ; RERR_IPC" |
---|
| 619 | echo "Erreur dans le code IPC" |
---|
| 620 | return;; |
---|
| 621 | 20) echo "Erreur de rsync ; RERR_SIGNAL" |
---|
| 622 | echo "SIGUSR1 ou SIGINT reçu" |
---|
| 623 | return;; |
---|
| 624 | 21) echo "Erreur de rsync ; RERR_WAITCHILD" |
---|
| 625 | echo "Une erreur retournée par waitpid()" |
---|
| 626 | return;; |
---|
| 627 | 22) echo "Erreur de rsync ; RERR_MALLOC" |
---|
| 628 | echo "Erreur lors de l'allocation des tampons de mémoire de coeur" |
---|
| 629 | return;; |
---|
| 630 | 23) echo "" |
---|
| 631 | echo "Erreur fichier inexistant" |
---|
| 632 | return;; |
---|
| 633 | 30) echo "Erreur de rsync ; RERR_TIMEOUT" |
---|
| 634 | echo "Temps d'attente écoulé dans l'envoi/réception de données" |
---|
| 635 | return;; |
---|
| 636 | *) echo "Erreur de rsync : code de retour de rsync inconnu :" $RET |
---|
| 637 | return;; |
---|
| 638 | esac |
---|
| 639 | elif [ $MYLANG = "en" ] ; then |
---|
| 640 | case $RET in |
---|
| 641 | 0) return;; |
---|
| 642 | 1) echo "rsync error : Syntax or usage error " |
---|
| 643 | return;; |
---|
| 644 | 2) echo "rsync error : Protocol incompatibility " |
---|
| 645 | return;; |
---|
| 646 | 3) echo "rsync error : Errors selecting input/output files, dirs" |
---|
| 647 | return;; |
---|
| 648 | 4) echo "rsync error : Requested action not supported: an attempt" |
---|
| 649 | echo "was made to manipulate 64-bit files on a platform that cannot support" |
---|
| 650 | echo "them; or an option was specified that is supported by the client and" |
---|
| 651 | echo "not by the server." |
---|
| 652 | return;; |
---|
| 653 | 5) echo "rsync error : Error starting client-server protocol" |
---|
| 654 | return;; |
---|
| 655 | 10) echo "rsync error : Error in socket I/O " |
---|
| 656 | return;; |
---|
| 657 | 11) echo "rsync error : Error in file I/O " |
---|
| 658 | return;; |
---|
| 659 | 12) echo "rsync error : Error in rsync protocol data stream " |
---|
| 660 | return;; |
---|
| 661 | 13) echo "rsync error : Errors with program diagnostics " |
---|
| 662 | return;; |
---|
| 663 | 14) echo "rsync error : Error in IPC code " |
---|
| 664 | return;; |
---|
| 665 | 20) echo "rsync error : Received SIGUSR1 or SIGINT " |
---|
| 666 | return;; |
---|
| 667 | 21) echo "rsync error : Some error returned by waitpid() " |
---|
| 668 | return;; |
---|
| 669 | 22) echo "rsync error : Error allocating core memory buffers " |
---|
| 670 | return;; |
---|
| 671 | 23) echo "rsync error : Partial transfer due to error" |
---|
| 672 | return;; |
---|
| 673 | 24) echo "rsync error : Partial transfer due to vanished source files" |
---|
| 674 | return;; |
---|
| 675 | 30) echo "rsync error : Timeout in data send/receive " |
---|
| 676 | return;; |
---|
| 677 | *) echo "rsync error : return code of rsync unknown :" $RET |
---|
| 678 | return;; |
---|
| 679 | esac |
---|
| 680 | else |
---|
| 681 | echo "unknown language $MYLANG." |
---|
| 682 | return |
---|
| 683 | fi |
---|
| 684 | } |
---|
| 685 | |
---|
| 686 | |
---|
| 687 | #D-#================================================== |
---|
| 688 | #D-function IGCM_sys_Miror_libIGCM |
---|
| 689 | #D-* Purpose: Mirror libIGCM PATH and lib to cesium |
---|
| 690 | #D-* Examples: |
---|
| 691 | #D- |
---|
| 692 | function IGCM_sys_Mirror_libIGCM { |
---|
| 693 | IGCM_debug_PushStack "IGCM_sys_Mirror_libIGCM" |
---|
| 694 | if ( $DEBUG_sys ) ; then |
---|
| 695 | echo "IGCM_sys_Mirror_libIGCM" |
---|
| 696 | fi |
---|
| 697 | |
---|
| 698 | typeset RET DEST |
---|
| 699 | |
---|
| 700 | mkdir -p ${HOME}/MIRROR/${PATHlibIGCM} |
---|
| 701 | |
---|
| 702 | echo ${RSYNC} ${RSYNC_opt} ${libIGCM} ${HOME}/MIRROR/${PATHlibIGCM} > out_rsync 2>&1 |
---|
| 703 | ${RSYNC} ${RSYNC_opt} ${libIGCM} ${HOME}/MIRROR/${PATHlibIGCM} >> out_rsync 2>&1 |
---|
| 704 | RET=$? |
---|
| 705 | |
---|
| 706 | if [ ${RET} -gt 0 ] ; then |
---|
| 707 | echo "IGCM_sys_Mirror_libIGCM Warning : no libIGCM on cesium." |
---|
| 708 | cat out_rsync |
---|
| 709 | fi |
---|
| 710 | IGCM_debug_PopStack "IGCM_sys_Mirror_libIGCM" |
---|
| 711 | } |
---|
| 712 | |
---|
| 713 | #==================================================== |
---|
| 714 | #- Call IGCM_sys_Mirror_libIGCM now ! |
---|
| 715 | if ( $MirrorlibIGCM ) ; then |
---|
| 716 | IGCM_sys_Mirror_libIGCM |
---|
| 717 | fi |
---|
| 718 | |
---|
| 719 | #D-#================================================== |
---|
| 720 | #D-function IGCM_sys_Cp |
---|
| 721 | #D-* Purpose: generic cp |
---|
| 722 | #D-* Examples: |
---|
| 723 | #D- |
---|
| 724 | function IGCM_sys_Cp { |
---|
| 725 | IGCM_debug_PushStack "IGCM_sys_Cp" $@ |
---|
| 726 | if ( $DEBUG_sys ) ; then |
---|
| 727 | echo "IGCM_sys_Cp :" $@ |
---|
| 728 | fi |
---|
| 729 | |
---|
| 730 | typeset RET |
---|
| 731 | |
---|
| 732 | echo cp $@ > out_rsync 2>&1 |
---|
| 733 | \cp $@ >> out_rsync 2>&1 |
---|
| 734 | RET=$? |
---|
| 735 | |
---|
| 736 | if [ ${RET} -gt 0 ] ; then |
---|
| 737 | echo "IGCM_sys_Cp : error." |
---|
| 738 | cat out_rsync |
---|
| 739 | IGCM_debug_Exit "IGCM_sys_Cp" |
---|
[343] | 740 | else |
---|
[404] | 741 | \rm out_rsync |
---|
[222] | 742 | fi |
---|
| 743 | IGCM_debug_PopStack "IGCM_sys_Cp" |
---|
| 744 | } |
---|
| 745 | |
---|
| 746 | #D-#================================================== |
---|
| 747 | #D-function IGCM_sys_Rm |
---|
| 748 | #D-* Purpose: generic rm |
---|
| 749 | #D-* Examples: |
---|
| 750 | #D- |
---|
| 751 | function IGCM_sys_Rm { |
---|
| 752 | IGCM_debug_PushStack "IGCM_sys_Rm" -- $@ |
---|
| 753 | if ( $DEBUG_sys ) ; then |
---|
| 754 | echo "IGCM_sys_Rm :" $@ |
---|
| 755 | fi |
---|
| 756 | |
---|
| 757 | typeset RET |
---|
| 758 | |
---|
| 759 | echo rm $@ > out_rsync 2>&1 |
---|
| 760 | \rm $@ >> out_rsync 2>&1 |
---|
| 761 | RET=$? |
---|
| 762 | |
---|
| 763 | if [ ${RET} -gt 0 ] ; then |
---|
| 764 | echo "IGCM_sys_Rm : error." |
---|
| 765 | cat out_rsync |
---|
| 766 | IGCM_debug_Exit "IGCM_sys_Rm" |
---|
[343] | 767 | else |
---|
[404] | 768 | \rm out_rsync |
---|
[222] | 769 | fi |
---|
| 770 | IGCM_debug_PopStack "IGCM_sys_Rm" |
---|
| 771 | } |
---|
| 772 | |
---|
| 773 | #D-#================================================== |
---|
| 774 | #D-function IGCM_sys_Mv |
---|
| 775 | #D-* Purpose: generic move |
---|
| 776 | #D-* Examples: |
---|
| 777 | #D- |
---|
| 778 | function IGCM_sys_Mv { |
---|
| 779 | IGCM_debug_PushStack "IGCM_sys_Mv" $@ |
---|
| 780 | if ( $DEBUG_sys ) ; then |
---|
| 781 | echo "IGCM_sys_Mv :" $@ |
---|
| 782 | fi |
---|
| 783 | |
---|
| 784 | if [ $DRYRUN = 0 ]; then |
---|
| 785 | |
---|
| 786 | typeset RET |
---|
| 787 | |
---|
| 788 | echo mv $@ > out_rsync 2>&1 |
---|
| 789 | \mv $@ >> out_rsync 2>&1 |
---|
| 790 | RET=$? |
---|
| 791 | |
---|
| 792 | if [ ${RET} -gt 0 ] ; then |
---|
| 793 | echo "IGCM_sys_Mv : error in mv." |
---|
| 794 | cat out_rsync |
---|
| 795 | IGCM_debug_Exit "IGCM_sys_Mv" |
---|
[343] | 796 | else |
---|
[404] | 797 | \rm out_rsync |
---|
[222] | 798 | fi |
---|
| 799 | else |
---|
| 800 | ( ${DEBUG_debug} ) && echo "DRYRUN mode = " $DRYRUN >> stack |
---|
| 801 | fi |
---|
| 802 | |
---|
| 803 | IGCM_debug_PopStack "IGCM_sys_Mv" |
---|
| 804 | } |
---|
| 805 | |
---|
| 806 | #D-#================================================== |
---|
| 807 | #D-function IGCM_sys_Put_Dir |
---|
| 808 | #D-* Purpose: Copy a complete directory on $(ARCHIVE) |
---|
| 809 | #D-* Examples: |
---|
| 810 | #D- |
---|
| 811 | function IGCM_sys_Put_Dir { |
---|
| 812 | IGCM_debug_PushStack "IGCM_sys_Put_Dir" $@ |
---|
| 813 | if ( $DEBUG_sys ) ; then |
---|
| 814 | echo "IGCM_sys_Put_Dir :" $@ |
---|
| 815 | fi |
---|
| 816 | if [ $DRYRUN = 0 ]; then |
---|
| 817 | if [ ! -d ${1} ] ; then |
---|
| 818 | echo "WARNING : IGCM_sys_Put_Dir ${1} DOES NOT EXIST ." |
---|
| 819 | IGCM_debug_PopStack "IGCM_sys_Put_Dir" |
---|
| 820 | return |
---|
| 821 | fi |
---|
| 822 | |
---|
| 823 | typeset RET |
---|
| 824 | |
---|
| 825 | # Only if we use rsync |
---|
| 826 | #IGCM_sys_TestDirArchive $( dirname $2 ) |
---|
| 827 | # |
---|
| 828 | #USUAL WAY |
---|
| 829 | \cp -r $1 $2 > out_rsync 2>&1 |
---|
| 830 | RET=$? |
---|
| 831 | |
---|
| 832 | if [ ${RET} -gt 0 ] ; then |
---|
| 833 | echo "IGCM_sys_Put_Dir : error." |
---|
| 834 | cat out_rsync |
---|
| 835 | IGCM_debug_Exit "IGCM_sys_Put_Dir" |
---|
[343] | 836 | else |
---|
[404] | 837 | \rm out_rsync |
---|
[222] | 838 | fi |
---|
| 839 | else |
---|
| 840 | ( ${DEBUG_debug} ) && echo "DRYRUN mode = " $DRYRUN >> stack |
---|
| 841 | fi |
---|
| 842 | IGCM_debug_PopStack "IGCM_sys_Put_Dir" |
---|
| 843 | } |
---|
| 844 | |
---|
| 845 | #D-#================================================== |
---|
| 846 | #D-function IGCM_sys_Get_Dir |
---|
| 847 | #D-* Purpose: Copy a complete directory from $(ARCHIVE) |
---|
| 848 | #D-* Examples: |
---|
| 849 | #D- |
---|
| 850 | function IGCM_sys_Get_Dir { |
---|
| 851 | IGCM_debug_PushStack "IGCM_sys_Get_Dir" $@ |
---|
| 852 | if ( $DEBUG_sys ) ; then |
---|
| 853 | echo "IGCM_sys_Get_Dir :" $@ |
---|
| 854 | fi |
---|
| 855 | if [ $DRYRUN = 0 ]; then |
---|
| 856 | if [ ! -d ${1} ] ; then |
---|
| 857 | echo "WARNING : IGCM_sys_Get_Dir ${1} DOES NOT EXIST ." |
---|
| 858 | IGCM_debug_PopStack "IGCM_sys_Get_Dir" |
---|
| 859 | return |
---|
| 860 | fi |
---|
| 861 | |
---|
| 862 | typeset RET |
---|
| 863 | |
---|
| 864 | # Only if we use rsync |
---|
| 865 | #IGCM_sys_TestDirArchive $( dirname $2 ) |
---|
| 866 | # |
---|
| 867 | #USUAL WAY |
---|
| 868 | \cp -r $1 $2 > out_rsync 2>&1 |
---|
| 869 | RET=$? |
---|
| 870 | |
---|
| 871 | if [ ${RET} -gt 0 ] ; then |
---|
| 872 | echo "IGCM_sys_Get_Dir : error." |
---|
| 873 | cat out_rsync |
---|
| 874 | IGCM_debug_Exit "IGCM_sys_Get_Dir" |
---|
[343] | 875 | else |
---|
[404] | 876 | \rm out_rsync |
---|
[222] | 877 | fi |
---|
| 878 | else |
---|
| 879 | ( ${DEBUG_debug} ) && echo "DRYRUN mode = " $DRYRUN >> stack |
---|
| 880 | fi |
---|
| 881 | IGCM_debug_PopStack "IGCM_sys_Get_Dir" |
---|
| 882 | } |
---|
| 883 | |
---|
| 884 | #D-#================================================== |
---|
| 885 | #D-function IGCM_sys_Get_Master |
---|
| 886 | #D-* Purpose: Copy a complete directory from MASTER filesystem |
---|
| 887 | #D-* Examples: |
---|
| 888 | #D- |
---|
| 889 | function IGCM_sys_Get_Master { |
---|
| 890 | IGCM_debug_PushStack "IGCM_sys_Get_Master" $@ |
---|
| 891 | if ( $DEBUG_sys ) ; then |
---|
| 892 | echo "IGCM_sys_Get_Master :" $@ |
---|
| 893 | fi |
---|
| 894 | if [ $DRYRUN = 0 ]; then |
---|
| 895 | if [ ! -d ${1} ] ; then |
---|
| 896 | echo "WARNING : IGCM_sys_Get_Master ${1} DOES NOT EXIST ." |
---|
| 897 | IGCM_debug_PopStack "IGCM_sys_Get_Master" |
---|
| 898 | return |
---|
| 899 | fi |
---|
| 900 | |
---|
| 901 | typeset RET |
---|
| 902 | sleep 60 |
---|
| 903 | |
---|
| 904 | #USUAL WAY |
---|
| 905 | \cp -r $1 $2 > out_rsync 2>&1 |
---|
| 906 | RET=$? |
---|
| 907 | |
---|
| 908 | if [ ${RET} -gt 0 ] ; then |
---|
| 909 | echo "IGCM_sys_Get_Master : error." |
---|
| 910 | cat out_rsync |
---|
| 911 | IGCM_debug_Exit "IGCM_sys_Get_Master" |
---|
| 912 | fi |
---|
| 913 | else |
---|
| 914 | ( ${DEBUG_debug} ) && echo "DRYRUN mode = " $DRYRUN >> stack |
---|
| 915 | fi |
---|
| 916 | IGCM_debug_PopStack "IGCM_sys_Get_Master" |
---|
| 917 | } |
---|
| 918 | |
---|
| 919 | #D-#================================================== |
---|
| 920 | #D-function IGCM_sys_Put_Rest |
---|
| 921 | #D-* Purpose: Put computied restarts on $(ARCHIVE). |
---|
| 922 | #D- File and target directory must exist. |
---|
| 923 | #D-* Examples: |
---|
| 924 | #D- |
---|
| 925 | function IGCM_sys_Put_Rest { |
---|
| 926 | IGCM_debug_PushStack "IGCM_sys_Put_Rest" $@ |
---|
| 927 | if ( $DEBUG_sys ) ; then |
---|
| 928 | echo "IGCM_sys_Put_Rest :" $@ |
---|
| 929 | fi |
---|
| 930 | if [ $DRYRUN = 0 ]; then |
---|
| 931 | if [ ! -f ${1} ] ; then |
---|
| 932 | echo "ERROR : IGCM_sys_Put_Rest ${1} DOES NOT EXIST ." |
---|
| 933 | IGCM_debug_Exit "IGCM_sys_Put_Rest" |
---|
| 934 | fi |
---|
| 935 | |
---|
| 936 | typeset RET |
---|
| 937 | # |
---|
| 938 | if [ X${JobType} = XRUN ] ; then |
---|
| 939 | IGCM_sys_Chmod 444 ${1} |
---|
| 940 | fi |
---|
| 941 | # |
---|
| 942 | IGCM_sys_TestDirArchive $( dirname $2 ) |
---|
| 943 | # |
---|
| 944 | # USUAL WAY |
---|
| 945 | \cp $1 $2 > out_rsync 2>&1 |
---|
| 946 | RET=$? |
---|
| 947 | |
---|
[245] | 948 | # #RSYNC WITH NETWORK SSH CALL |
---|
[222] | 949 | # echo ${RSYNC} ${RSYNC_opt} -e ssh ${RUN_DIR}/$1 ${RHOST}:${2} > out_rsync 2>&1 |
---|
| 950 | # ${RSYNC} ${RSYNC_opt} -e ssh ${RUN_DIR}/$1 ${RHOST}:${2} >> out_rsync 2>&1 |
---|
| 951 | |
---|
| 952 | # #RSYNC WITH NFS USE |
---|
| 953 | # echo ${RSYNC} ${RSYNC_opt} ${RUN_DIR}/$1 ${2} > out_rsync 2>&1 |
---|
| 954 | # ${RSYNC} ${RSYNC_opt} ${RUN_DIR}/$1 ${2} >> out_rsync 2>&1 |
---|
| 955 | |
---|
| 956 | # RET=$? |
---|
| 957 | # IGCM_sys_Rsync_out $RET |
---|
| 958 | |
---|
| 959 | # ${libIGCM}/libIGCM_sys/IGCM_analyse_rsync_out.awk out_rsync |
---|
| 960 | # (( RET=RET+$? )) |
---|
| 961 | |
---|
| 962 | if [ ${RET} -gt 0 ] ; then |
---|
| 963 | echo "IGCM_sys_Put_Rest : error." |
---|
| 964 | cat out_rsync |
---|
| 965 | IGCM_debug_Exit "IGCM_sys_Put_Rest" |
---|
[343] | 966 | else |
---|
[404] | 967 | \rm out_rsync |
---|
[222] | 968 | fi |
---|
| 969 | else |
---|
| 970 | ( ${DEBUG_debug} ) && echo "DRYRUN mode = " $DRYRUN >> stack |
---|
| 971 | fi |
---|
| 972 | IGCM_debug_PopStack "IGCM_sys_Put_Rest" |
---|
| 973 | } |
---|
| 974 | |
---|
| 975 | #D-#================================================== |
---|
| 976 | #D-function IGCM_sys_Put_Out |
---|
| 977 | #D-* Purpose: Copy a file on $(ARCHIVE) after have chmod it in readonly |
---|
| 978 | #D-* Examples: |
---|
| 979 | #D- |
---|
| 980 | function IGCM_sys_Put_Out { |
---|
| 981 | IGCM_debug_PushStack "IGCM_sys_Put_Out" $@ |
---|
| 982 | if ( $DEBUG_sys ) ; then |
---|
| 983 | echo "IGCM_sys_Put_Out :" $@ |
---|
| 984 | fi |
---|
| 985 | if [ $DRYRUN = 0 ]; then |
---|
| 986 | if [ ! -f ${1} ] ; then |
---|
| 987 | echo "WARNING : IGCM_sys_Put_Out ${1} DOES NOT EXIST ." |
---|
| 988 | IGCM_debug_PopStack "IGCM_sys_Put_Out" |
---|
| 989 | return 1 |
---|
| 990 | fi |
---|
| 991 | # |
---|
| 992 | IGCM_sys_MkdirArchive $( dirname $2 ) |
---|
| 993 | # |
---|
| 994 | typeset RET |
---|
| 995 | |
---|
| 996 | #===================================================== |
---|
| 997 | # COMMENT OUT DOUBLE COPY ON SCRATCHDIR |
---|
| 998 | #===================================================== |
---|
| 999 | |
---|
| 1000 | #echo ${2} | grep "${R_OUT}" > /dev/null 2>&1 |
---|
| 1001 | #if [ $? -eq 0 ] ; then |
---|
| 1002 | # typeset WORKPATH FILEPATH |
---|
| 1003 | # WORKPATH=$( dirname $2 | sed -e "s|${R_OUT}|${R_OUT_SCR}|" ) |
---|
| 1004 | # IGCM_sys_MkdirWork ${WORKPATH} |
---|
| 1005 | # FILEPATH=${WORKPATH}/$( basename $2 ) |
---|
| 1006 | # # |
---|
| 1007 | # IGCM_sys_Cp ${1} ${FILEPATH} |
---|
| 1008 | #fi |
---|
| 1009 | |
---|
| 1010 | if [ X${JobType} = XRUN ] ; then |
---|
[245] | 1011 | if [ X${3} = X ] ; then |
---|
| 1012 | IGCM_sys_Chmod 444 ${1} |
---|
| 1013 | fi |
---|
[222] | 1014 | fi |
---|
| 1015 | # |
---|
| 1016 | # USUAL WAY |
---|
| 1017 | \cp $1 $2 > out_rsync 2>&1 |
---|
| 1018 | RET=$? |
---|
| 1019 | |
---|
[245] | 1020 | # #RSYNC WITH NETWORK SSH CALL |
---|
[222] | 1021 | # echo ${RSYNC} ${RSYNC_opt} -e ssh ${RUN_DIR}/$1 ${RHOST}:${2} > out_rsync 2>&1 |
---|
| 1022 | # ${RSYNC} ${RSYNC_opt} -e ssh ${RUN_DIR}/$1 ${RHOST}:${2} >> out_rsync 2>&1 |
---|
| 1023 | |
---|
| 1024 | # #RSYNC WITH NFS USE |
---|
| 1025 | # echo ${RSYNC} ${RSYNC_opt} ${RUN_DIR}/$1 ${2} > out_rsync 2>&1 |
---|
| 1026 | # ${RSYNC} ${RSYNC_opt} ${RUN_DIR}/$1 ${2} >> out_rsync 2>&1 |
---|
| 1027 | |
---|
| 1028 | # RET=$? |
---|
| 1029 | # IGCM_sys_Rsync_out $RET |
---|
| 1030 | |
---|
| 1031 | # ${libIGCM}/libIGCM_sys/IGCM_analyse_rsync_out.awk out_rsync |
---|
| 1032 | # (( RET=RET+$? )) |
---|
| 1033 | |
---|
| 1034 | if [ ${RET} -gt 0 ] ; then |
---|
| 1035 | echo "IGCM_sys_Put_Out : error." |
---|
| 1036 | cat out_rsync |
---|
| 1037 | IGCM_debug_Exit "IGCM_sys_Put_Out" |
---|
[343] | 1038 | else |
---|
[404] | 1039 | \rm out_rsync |
---|
[222] | 1040 | fi |
---|
| 1041 | else |
---|
| 1042 | ( ${DEBUG_debug} ) && echo "DRYRUN mode = " $DRYRUN >> stack |
---|
| 1043 | fi |
---|
| 1044 | IGCM_debug_PopStack "IGCM_sys_Put_Out" |
---|
| 1045 | return 0 |
---|
| 1046 | } |
---|
| 1047 | |
---|
| 1048 | #D-#================================================== |
---|
| 1049 | #D-function IGCM_sys_Get |
---|
| 1050 | #D-* Purpose: Get a file from ${ARCHIVE} |
---|
| 1051 | #D-* Examples: IGCM_sys_Get myfile /destpath/myfile_with_PREFIX |
---|
| 1052 | #D- IGCM_sys_Get /l Array_contain_myfiles /destpath/ |
---|
| 1053 | function IGCM_sys_Get { |
---|
| 1054 | IGCM_debug_PushStack "IGCM_sys_Get" $@ |
---|
| 1055 | |
---|
| 1056 | typeset DEST RET dm_liste ifile target file_work |
---|
| 1057 | |
---|
| 1058 | if ( $DEBUG_sys ) ; then |
---|
| 1059 | echo "IGCM_sys_Get :" $@ |
---|
| 1060 | fi |
---|
| 1061 | if [ $DRYRUN -le 2 ]; then |
---|
| 1062 | if [ X${1} = X'/l' ] ; then |
---|
| 1063 | # test if the first file is present in the old computation : |
---|
| 1064 | eval set +A dm_liste \${${2}} |
---|
| 1065 | else |
---|
| 1066 | eval set +A dm_liste ${1} |
---|
| 1067 | fi |
---|
| 1068 | eval DEST=\${${#}} |
---|
| 1069 | |
---|
| 1070 | #===================================================== |
---|
| 1071 | # COMMENT OUT DOUBLE COPY ON SCRATCHDIR |
---|
| 1072 | #===================================================== |
---|
| 1073 | |
---|
| 1074 | # Is it an R_OUT file (not R_IN) ? |
---|
| 1075 | #echo ${dm_liste[0]} | grep "${R_OUT}" > /dev/null 2>&1 |
---|
| 1076 | #if [ $? -eq 0 ] ; then |
---|
| 1077 | # # Yes ? then we try to get it in SCRATCHDIR |
---|
| 1078 | # set +A file_work $( echo ${dm_liste[*]} | sed -e "s|${R_OUT}|${R_OUT_SCR}|g" ) |
---|
| 1079 | # if [ -f ${file_work[0]} ] ; then |
---|
| 1080 | # IGCM_sys_Cp ${file_work[*]} ${DEST} |
---|
| 1081 | # IGCM_debug_PopStack "IGCM_sys_Get" |
---|
| 1082 | # return |
---|
| 1083 | # fi |
---|
| 1084 | #fi |
---|
| 1085 | |
---|
| 1086 | # test if the (first) file is present in the old computation : |
---|
| 1087 | IGCM_sys_TestFileArchive ${dm_liste[0]} |
---|
| 1088 | RET=$? |
---|
| 1089 | if [ ${RET} -gt 0 ] ; then |
---|
| 1090 | echo "IGCM_sys_Get, ERROR : regular file ${dm_liste[0]} DOES NOT EXIST ." |
---|
| 1091 | IGCM_debug_Exit "IGCM_sys_Get" |
---|
| 1092 | IGCM_debug_PopStack "IGCM_sys_Get" |
---|
| 1093 | return |
---|
| 1094 | fi |
---|
| 1095 | |
---|
| 1096 | # dmget ${dm_liste[*]} > out_rsync 2>&1 |
---|
| 1097 | # RET=$? |
---|
| 1098 | # if [ ${RET} -gt 0 ] ; then |
---|
| 1099 | # echo "IGCM_sys_Get : demigration error." |
---|
| 1100 | # cat out_rsync |
---|
| 1101 | # IGCM_debug_Exit "IGCM_sys_Get" |
---|
| 1102 | # fi |
---|
| 1103 | |
---|
| 1104 | #USUAL WAY |
---|
| 1105 | if [ X${1} = X'/l' ] ; then |
---|
| 1106 | (( RET=0 )) |
---|
| 1107 | for target in ${dm_liste[*]} ; do |
---|
| 1108 | local_file=$( basename ${target} ) |
---|
| 1109 | \cp ${target} ${DEST}/${local_file} >> out_rsync 2>&1 |
---|
| 1110 | (( RET = RET + $? )) |
---|
| 1111 | done |
---|
| 1112 | else |
---|
| 1113 | \cp ${dm_liste} ${DEST} >> out_rsync 2>&1 |
---|
| 1114 | RET=$? |
---|
| 1115 | fi |
---|
| 1116 | |
---|
[245] | 1117 | # #RSYNC WITH NETWORK SSH CALL |
---|
[222] | 1118 | # echo ${RSYNC} ${RSYNC_opt} -e ssh ${RHOST}:"${dm_liste}" ${RHOST}:${RUN_DIR}/${DEST} > out_rsync 2>&1 |
---|
| 1119 | # ${RSYNC} ${RSYNC_opt} -e ssh ${RHOST}:"${dm_liste}" ${RHOST}:${RUN_DIR}/${DEST} >> out_rsync 2>&1 |
---|
| 1120 | |
---|
| 1121 | # #RSYNC WITH NFS USE |
---|
| 1122 | # echo ${RSYNC} ${RSYNC_opt} ${dm_liste} ${RUN_DIR}/${DEST} > out_rsync 2>&1 |
---|
| 1123 | # ${RSYNC} ${RSYNC_opt} ${dm_liste} ${RUN_DIR}/${DEST} >> out_rsync 2>&1 |
---|
| 1124 | |
---|
| 1125 | # RET=$? |
---|
| 1126 | # IGCM_sys_Rsync_out $RET |
---|
| 1127 | |
---|
| 1128 | # ${libIGCM}/libIGCM_sys/IGCM_analyse_rsync_out.awk out_rsync |
---|
| 1129 | # (( RET=RET+$? )) |
---|
| 1130 | |
---|
| 1131 | if [ ${RET} -gt 0 ] ; then |
---|
| 1132 | echo "IGCM_sys_Get : copy error." |
---|
| 1133 | cat out_rsync |
---|
| 1134 | IGCM_debug_Exit "IGCM_sys_Get" |
---|
[343] | 1135 | else |
---|
[404] | 1136 | \rm out_rsync |
---|
[222] | 1137 | fi |
---|
| 1138 | else |
---|
| 1139 | ( ${DEBUG_debug} ) && echo "DRYRUN mode = " $DRYRUN >> stack |
---|
| 1140 | fi |
---|
| 1141 | IGCM_debug_PopStack "IGCM_sys_Get" |
---|
| 1142 | } |
---|
| 1143 | |
---|
| 1144 | ############################################################## A FINIR !! |
---|
| 1145 | |
---|
| 1146 | #D-#================================================== |
---|
| 1147 | #D-function IGCM_sys_GetDate_FichWork |
---|
| 1148 | #D-* Purpose: donne la date filesys d'un fichier sur le filesystem WORK |
---|
| 1149 | #D-* Examples: |
---|
| 1150 | #D- |
---|
| 1151 | function IGCM_sys_GetDate_FichWork { |
---|
| 1152 | IGCM_debug_PushStack "IGCM_sys_FichWork" $@ |
---|
| 1153 | if ( $DEBUG_sys ) ; then |
---|
| 1154 | echo "IGCM_sys_GetDate_FichWork :" $@ |
---|
| 1155 | fi |
---|
| 1156 | # donne la date filesys d'un fichier sur la machine work |
---|
| 1157 | IGCM_debug_PopStack "IGCM_sys_FichWork" |
---|
| 1158 | } |
---|
| 1159 | |
---|
| 1160 | #D-#================================================== |
---|
| 1161 | #D-function IGCM_sys_GetDate_FichArchive |
---|
| 1162 | #D-* Purpose: donne la date filesys d'un fichier sur le filesystem ARCHIVE |
---|
| 1163 | #D-* Examples: |
---|
| 1164 | #D- |
---|
| 1165 | function IGCM_sys_GetDate_FichArchive { |
---|
| 1166 | IGCM_debug_PushStack "IGCM_sys_FichArchive" $@ |
---|
| 1167 | if ( $DEBUG_sys ) ; then |
---|
| 1168 | echo "IGCM_sys_GetDate_FichArchive :" $@ |
---|
| 1169 | fi |
---|
| 1170 | IGCM_debug_PopStack "IGCM_sys_FichArchive" |
---|
| 1171 | } |
---|
| 1172 | |
---|
| 1173 | ############################################################## |
---|
| 1174 | # REBUILD OPERATOR |
---|
| 1175 | |
---|
| 1176 | function IGCM_sys_rebuild { |
---|
| 1177 | IGCM_debug_PushStack "IGCM_sys_rebuild" -- $@ |
---|
| 1178 | if ( $DEBUG_sys ) ; then |
---|
| 1179 | echo "IGCM_sys_rebuild :" $@ |
---|
| 1180 | fi |
---|
| 1181 | /home/cont003/p86ipsl/X64/bin/rebuild -f -o $@ |
---|
| 1182 | if [ $? -gt 0 ] ; then |
---|
| 1183 | echo "IGCM_sys_rebuild : erreur ${@}." |
---|
| 1184 | IGCM_debug_Exit "rebuild" |
---|
| 1185 | fi |
---|
| 1186 | |
---|
| 1187 | IGCM_debug_PopStack "IGCM_sys_rebuild" |
---|
| 1188 | } |
---|
| 1189 | |
---|
| 1190 | ############################################################ |
---|
| 1191 | # Activate Running Environnment Variables |
---|
| 1192 | |
---|
| 1193 | function IGCM_sys_activ_variables { |
---|
| 1194 | IGCM_debug_PushStack "IGCM_sys_activ_variables" |
---|
| 1195 | if ( $DEBUG_sys ) ; then |
---|
| 1196 | echo "IGCM_sys_activ_variables" |
---|
| 1197 | fi |
---|
| 1198 | ulimit -s 2097152 |
---|
| 1199 | IGCM_debug_PopStack "IGCM_sys_activ_variables" |
---|
| 1200 | } |
---|
| 1201 | |
---|
| 1202 | ############################################################ |
---|
| 1203 | # Desactivate Running Environnment Variables |
---|
| 1204 | |
---|
| 1205 | function IGCM_sys_desactiv_variables { |
---|
| 1206 | IGCM_debug_PushStack "IGCM_sys_desactiv_variables" |
---|
| 1207 | if ( $DEBUG_sys ) ; then |
---|
| 1208 | echo "IGCM_sys_desactiv_variables" |
---|
| 1209 | fi |
---|
| 1210 | IGCM_debug_PopStack "IGCM_sys_desactiv_variables" |
---|
| 1211 | } |
---|
| 1212 | |
---|
| 1213 | ############################################################ |
---|
| 1214 | # Build run file |
---|
| 1215 | |
---|
| 1216 | function IGCM_sys_build_run_file { |
---|
| 1217 | IGCM_debug_PushStack "IGCM_sys_build_run_file" $@ |
---|
| 1218 | if ( $DEBUG_sys ) ; then |
---|
| 1219 | echo "IGCM_sys_build_run_file " $@ |
---|
| 1220 | fi |
---|
[395] | 1221 | |
---|
| 1222 | # set Number of processors for OCE here |
---|
| 1223 | NUM_PROC_OCE=5 |
---|
| 1224 | |
---|
[222] | 1225 | (( NUM_PROC_ATM = $BATCH_NUM_PROC_TOT - NUM_PROC_OCE - 1)) |
---|
| 1226 | (( nb_tot_m1 = $BATCH_NUM_PROC_TOT - NUM_PROC_OCE )) |
---|
| 1227 | if [ $1 = MPI1 ]; then |
---|
| 1228 | cat <<EOF > run_file |
---|
| 1229 | -np 1 ./oasis |
---|
| 1230 | -np ${NUM_PROC_ATM} ./lmdz.x |
---|
| 1231 | -np ${NUM_PROC_OCE} ./opa.xx |
---|
| 1232 | EOF |
---|
| 1233 | config_UserChoices_JobRunOptions='"--app"' |
---|
| 1234 | IGCM_sys_Chmod u+x run_file |
---|
| 1235 | fi |
---|
| 1236 | IGCM_debug_PopStack "IGCM_sys_build_run_file" |
---|
| 1237 | |
---|
| 1238 | } |
---|