[222] | 1 | #!/bin/ksh |
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| 2 | |
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| 3 | #************************************************************** |
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[373] | 4 | # Author: Sebastien Denvil, Martial Mancip, Arnaud Caubel |
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| 5 | # Contact: Arnaud.Caubel__at__lsce.ipsl.fr |
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| 6 | # $Revision:: $ Revision of last commit |
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| 7 | # $Author:: $ Author of last commit |
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| 8 | # $Date:: $ Date of last commit |
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[222] | 9 | # IPSL (2006) |
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| 10 | # This software is governed by the CeCILL licence see libIGCM/libIGCM_CeCILL.LIC |
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| 11 | # |
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| 12 | #************************************************************** |
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| 13 | |
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| 14 | #========================================================= |
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| 15 | # The documentation of this file can be automatically generated |
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[623] | 16 | # if you use the prefix #D- for comments to be extracted. |
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[222] | 17 | # Extract with command: cat lib* | grep "^#D-" | cut -c "4-" |
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| 18 | #========================================================= |
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| 19 | |
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| 20 | #D-#================================================== |
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| 21 | #D-LibIGCM_sys for Titane |
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| 22 | #D-#================================================== |
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| 23 | #D- |
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[623] | 24 | #D- This ksh library if a layer under some usefull |
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[222] | 25 | #D-environment variables and shell commands. |
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| 26 | #D-All those definitions depend on host particularities. |
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| 27 | #D-It manages a stack mechanism and test validity of operations. |
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| 28 | #D-All function described bellow must be prefixed by IGCM_sys. |
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| 29 | |
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| 30 | #==================================================== |
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| 31 | # libIGCM_sys PARAMETERS |
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| 32 | #==================================================== |
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| 33 | |
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| 34 | #==================================================== |
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| 35 | # set DEBUG_sys to true to output calls of function |
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| 36 | typeset -r DEBUG_sys=${DEBUG_sys:=true} |
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| 37 | |
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| 38 | #==================================================== |
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| 39 | # Turn in dry run mode ? (sys_Put_Rest, sys_Put_Out, sys_Get) |
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| 40 | typeset -r DRYRUN=${DRYRUN:=0} |
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| 41 | |
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| 42 | # YOU MUST COMPILE YOUR EXE FILES FOR DRYRUN MODE ! |
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| 43 | # ------------------------------------------------------------------------------------- |
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[623] | 44 | # | DRYRUN= | Date computations, | sys_Get | Exe | sys_Put_Out; sys_Put_Rest | |
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| 45 | # | | Cp/Exe param files | | Chmod | | |
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| 46 | # | | Qsub | | | | |
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[222] | 47 | # ------------------------------------------------------------------------------------- |
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[623] | 48 | # | 0 | yes | yes | yes | yes | |
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[222] | 49 | # ------------------------------------------------------------------------------------- |
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[623] | 50 | # | 1 | yes | yes | yes | no | |
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[222] | 51 | # ------------------------------------------------------------------------------------- |
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[623] | 52 | # | 2 | yes | yes | no | no | |
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[222] | 53 | # ------------------------------------------------------------------------------------- |
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[623] | 54 | # | 3 | yes | no | no | no | |
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[222] | 55 | # ------------------------------------------------------------------------------------- |
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| 56 | |
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| 57 | #===================================================== |
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| 58 | # Global Variables : |
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| 59 | #===================================================== |
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| 60 | # Language : "fr" or "en" |
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| 61 | typeset -r MYLANG="fr" |
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| 62 | |
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| 63 | #===================================================== |
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[245] | 64 | # Host and user names |
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| 65 | # $hostname ou hostname |
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| 66 | typeset HOST=${HOST:=$( hostname )} |
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[222] | 67 | # $username ou whoami |
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[245] | 68 | typeset LOGIN=${LOGIN:=$( whoami )} |
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[222] | 69 | # $hostname of the MASTER job |
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[544] | 70 | typeset MASTER=titane |
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[222] | 71 | |
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| 72 | #D- |
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| 73 | #D-#================================================== |
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| 74 | #D-Program used in libIGCM |
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| 75 | #D-#================================================== |
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| 76 | |
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| 77 | # rsync with path |
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| 78 | typeset -r RSYNC=/usr/bin/rsync |
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| 79 | # RSYNC_opt args to rsync |
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| 80 | typeset -r RSYNC_opt="-va" |
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| 81 | # ie storage filesystem |
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[538] | 82 | typeset -r STOREHOST=${MASTER} |
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[222] | 83 | |
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| 84 | #==================================================== |
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[451] | 85 | # Source default environment |
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| 86 | #==================================================== |
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| 87 | . /etc/profile |
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| 88 | |
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| 89 | #==================================================== |
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[305] | 90 | # Set environment tools (ferret, nco, cdo) |
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| 91 | #==================================================== |
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[451] | 92 | . /home/cont003/p86ipsl/.atlas_env_titane_ksh |
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[648] | 93 | if ( [ X${LSB_QUEUE} = Xmono ] || [ X${LSB_QUEUE} = Xmonoext ] ) ; then |
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[634] | 94 | module switch nco/3.9.4 nco/3.9.4_netcdf4 |
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| 95 | fi |
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[222] | 96 | |
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| 97 | #==================================================== |
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| 98 | # Specific for ocean additionnal diagnostic |
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[451] | 99 | export FER_GO="$FER_GO /home/cont003/p86denv/IGCM_POST_UTIL/JNL /home/cont003/p86denv/GRAF /home/cont003/p86denv/GRAF/GO" |
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| 100 | export FER_PALETTE="$FER_PALETTE /home/cont003/p86denv/GRAF/PALET" |
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[222] | 101 | |
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| 102 | #==================================================== |
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| 103 | # Host specific DIRECTORIES |
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| 104 | #==================================================== |
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| 105 | |
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[544] | 106 | # ============ CESIUM START ============ # |
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| 107 | |
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[222] | 108 | #==================================================== |
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| 109 | #- Mirror libIGCM from titane to cesium if needed |
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[544] | 110 | #ROOTSYS=$( echo ${libIGCM} | gawk -F"/" '{print $3}' ) |
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| 111 | #if [ ! ${ROOTSYS} = "home" ] ; then |
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| 112 | # typeset -r MirrorlibIGCM=${MirrorlibIGCM:=true} |
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| 113 | #else |
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| 114 | # typeset -r MirrorlibIGCM=${MirrorlibIGCM:=false} |
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| 115 | #fi |
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[222] | 116 | |
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| 117 | #==================================================== |
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| 118 | #- libIGCM_POST |
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[544] | 119 | #if ( ${MirrorlibIGCM} ) ; then |
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| 120 | # PATHlibIGCM=$( echo ${libIGCM} | gawk -F"${LOGIN}/" '{print $2}' | sed -e "s&/libIGCM&&" ) |
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| 121 | # typeset -r libIGCM_POST=${HOME}/MIRROR/${PATHlibIGCM}/libIGCM |
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| 122 | #else |
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| 123 | # typeset -r libIGCM_POST=${libIGCM} |
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| 124 | #fi |
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[222] | 125 | |
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[544] | 126 | # ============ CESIUM END ============ # |
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| 127 | |
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[222] | 128 | #==================================================== |
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[544] | 129 | #- MirrorlibIGCM for frontend |
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| 130 | typeset -r MirrorlibIGCM=${MirrorlibIGCM:=false} |
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| 131 | |
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| 132 | #==================================================== |
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| 133 | #- libIGCM_POST for frontend |
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| 134 | typeset -r libIGCM_POST=${libIGCM} |
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| 135 | |
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| 136 | #==================================================== |
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[587] | 137 | #- R_EXE (==> BIN_DIR = ${MODIPSL}/bin ) |
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| 138 | typeset -r R_EXE="${MODIPSL}/bin" |
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| 139 | |
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| 140 | #==================================================== |
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| 141 | #- SUBMIT_DIR : submission dir |
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| 142 | typeset SUBMIT_DIR=${SUBMIT_DIR:=${LS_SUBCWD}} |
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| 143 | |
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| 144 | #==================================================== |
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| 145 | #- ARCHIVE (dedicated to large files) |
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| 146 | typeset -r ARCHIVE=${CCCSTOREDIR} |
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| 147 | |
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| 148 | #- ARCHIVE (dedicated to small/medium files) |
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| 149 | typeset -r STORAGE=${CCCWORKDIR} |
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| 150 | |
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| 151 | #==================================================== |
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[222] | 152 | #- IN |
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[545] | 153 | typeset -r R_IN=${R_IN:=/ccc/work/cont003/dsm/p86ipsl/IGCM} |
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[438] | 154 | typeset -r R_IN_ECMWF=${R_IN_ECMWF:=/dmnfs/cont003/p24data} |
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[222] | 155 | |
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| 156 | #==================================================== |
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[544] | 157 | #- R_OUT |
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[222] | 158 | typeset -r R_OUT=${ARCHIVE}/IGCM_OUT |
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| 159 | |
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| 160 | #==================================================== |
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[587] | 161 | #- R_FIG (hosting figures : monitoring and atlas, and/or small files) |
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| 162 | typeset -r R_FIG=${STORAGE}/IGCM_OUT |
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| 163 | |
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| 164 | #==================================================== |
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[544] | 165 | #- R_BUF (ONLY FOR double copy an scratch) |
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| 166 | typeset -r R_BUF=${SCRATCHDIR}/IGCM_OUT |
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[222] | 167 | |
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| 168 | #==================================================== |
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[544] | 169 | #- BIG_DIR : BIG_DIR to store files waiting for rebuild |
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| 170 | typeset -r BIG_DIR=${BIG_DIR:=${SCRATCHDIR}/REBUILD} |
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| 171 | |
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| 172 | #==================================================== |
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[222] | 173 | #- OUT_POST |
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| 174 | typeset -r R_OUT_POST=${SCRATCHDIR}/IGCM_OUT |
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| 175 | |
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| 176 | #==================================================== |
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| 177 | #- RUN_DIR_PATH : Temporary working directory (=> TMP) |
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[648] | 178 | if ( [ ! X${LSB_QUEUE} = Xmono ] && [ ! X${LSB_QUEUE} = Xmonoext ] ) ; then |
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[544] | 179 | typeset -r RUN_DIR_PATH=${RUN_DIR_PATH:=${SCRATCHDIR}/RUN_DIR/${LSB_JOBID}} |
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[459] | 180 | else |
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[544] | 181 | typeset -r RUN_DIR_PATH=${RUN_DIR_PATH:=${SCRATCHDIR}/TMPDIR_IGCM/${LSB_JOBID}} |
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[459] | 182 | fi |
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[222] | 183 | |
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| 184 | #==================================================== |
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| 185 | #- HOST_MPIRUN_COMMAND |
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| 186 | typeset -r HOST_MPIRUN_COMMAND=${HOST_MPIRUN_COMMAND:="time mpirun"} |
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| 187 | |
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| 188 | #==================================================== |
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| 189 | #- Max number of arguments passed to nco operator or demigration command |
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| 190 | UNIX_MAX_LIMIT=360 |
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| 191 | |
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[616] | 192 | #==================================================== |
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| 193 | #- set PackDefault true on titane |
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| 194 | PackDefault=true |
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| 195 | |
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[664] | 196 | #==================================================== |
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| 197 | #- Number of core per node (max number of OpenMP task) |
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[616] | 198 | NUM_COREPERNODE=8 |
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[623] | 199 | |
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[616] | 200 | #==================================================== |
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| 201 | #- Default number of MPI task for IPSL coupled model |
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| 202 | #- required for backward compatibility |
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| 203 | #- |
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| 204 | DEFAULT_NUM_PROC_OCE=5 |
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| 205 | DEFAULT_NUM_PROC_CPL=1 |
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[637] | 206 | (( DEFAULT_NUM_PROC_ATM = BATCH_NUM_PROC_TOT - DEFAULT_NUM_PROC_OCE - DEFAULT_NUM_PROC_CPL )) |
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| 207 | DEFAULT_NUM_PROC_TOTAL=${BATCH_NUM_PROC_TOT} |
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[616] | 208 | |
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[637] | 209 | |
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[222] | 210 | #D-#================================================== |
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| 211 | #D-function IGCM_sys_RshMaster |
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[531] | 212 | #D-* Purpose: Connection to frontend machine. |
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[222] | 213 | #D-* Examples: |
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| 214 | #D- |
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| 215 | function IGCM_sys_RshMaster { |
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[544] | 216 | IGCM_debug_PushStack "IGCM_sys_RshMaster" $@ |
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| 217 | /bin/ksh <<-EOF |
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[222] | 218 | export libIGCM=${libIGCM} |
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| 219 | export DEBUG_debug=${DEBUG_debug} |
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| 220 | . ${libIGCM}/libIGCM_debug/libIGCM_debug.ksh |
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| 221 | . ${libIGCM}/libIGCM_card/libIGCM_card.ksh |
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| 222 | ${@} |
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| 223 | EOF |
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[544] | 224 | if [ $? -gt 0 ] ; then |
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| 225 | echo "IGCM_sys_RshMaster : erreur." |
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| 226 | IGCM_debug_Exit "IGCM_sys_RshMaster" |
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| 227 | fi |
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| 228 | IGCM_debug_PopStack "IGCM_sys_RshMaster" |
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[222] | 229 | } |
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| 230 | |
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| 231 | #D-#================================================== |
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| 232 | #D-function IGCM_sys_RshArchive |
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| 233 | #D-* Purpose: Archive rsh command |
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| 234 | #D-* Examples: |
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| 235 | #D- |
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| 236 | function IGCM_sys_RshArchive { |
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[544] | 237 | IGCM_debug_PushStack "IGCM_sys_RshArchive" $@ |
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| 238 | /bin/ksh <<-EOF |
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[222] | 239 | ${@} |
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| 240 | EOF |
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[544] | 241 | if [ $? -gt 0 ] ; then |
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| 242 | echo "IGCM_sys_RshArchive : erreur." |
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| 243 | IGCM_debug_Exit "IGCM_sys_RshArchive" |
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| 244 | fi |
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| 245 | IGCM_debug_PopStack "IGCM_sys_RshArchive" |
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[222] | 246 | } |
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| 247 | |
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| 248 | #D-#================================================== |
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| 249 | #D-function IGCM_sys_RshPost |
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| 250 | #D-* Purpose: Post-process rsh command |
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| 251 | #D-* Examples: |
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| 252 | #D- |
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| 253 | function IGCM_sys_RshPost { |
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[544] | 254 | IGCM_debug_PushStack "IGCM_sys_RshPost" $@ |
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| 255 | if ( $DEBUG_sys ) ; then |
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| 256 | echo "IGCM_sys_RshPost :" $@ |
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| 257 | fi |
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[324] | 258 | |
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[544] | 259 | #echo cat tmp_IGCM_sys_RshPost_$$ INITIAL |
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| 260 | #cat tmp_IGCM_sys_RshPost_$$ |
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| 261 | # keep standard input (stdin) for the loop onto temporary file |
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| 262 | cat >tmp_IGCM_sys_RshPost_$$ |
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[222] | 263 | |
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[544] | 264 | # ============ FRONTEND START ============ # |
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[451] | 265 | |
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[544] | 266 | /bin/ksh <tmp_IGCM_sys_RshPost_$$ |
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| 267 | if [ $? -gt 0 ] ; then |
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| 268 | echo "IGCM_sys_RshPost : erreur." |
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| 269 | IGCM_debug_Exit "IGCM_sys_RshPost" |
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| 270 | fi |
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| 271 | # delete temporary file |
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| 272 | \rm tmp_IGCM_sys_RshPost_$$ |
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[451] | 273 | |
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[544] | 274 | # ============ FRONTEND END ============ # |
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| 275 | |
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| 276 | # ============ CESIUM START ============ # |
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| 277 | # typeset NB_ESSAI DELAI status i |
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| 278 | # if [ "X$( grep rebuild_from tmp_IGCM_sys_RshPost_$$ )" != "X" ] ; then |
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| 279 | # #little hack so that rebuild submission is done on titane not an cesium |
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[623] | 280 | # |
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[544] | 281 | # libIGCM_POST_sed=$( echo $libIGCM_POST | sed 's/\//\\\//g' ) |
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| 282 | # POST_DIR_sed=$( echo ${POST_DIR} | sed 's/\//\\\//g' ) |
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| 283 | # sed "s/IGCM_sys_QsubPost/IGCM_sys_Qsub/g" tmp_IGCM_sys_RshPost_$$ > tmp.txt |
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| 284 | # sed "s/ rebuild_fromWorkdir/ ${libIGCM_POST_sed}\/rebuild_fromWorkdir.job/g" tmp.txt > tmp_IGCM_sys_RshPost_$$ |
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| 285 | # sed "s/ rebuild_fromArchive/ ${libIGCM_POST_sed}\/rebuild_fromArchive.job/g" tmp_IGCM_sys_RshPost_$$ > tmp.txt |
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| 286 | # sed "s/Script_Post_Output=/Script_Output=${POST_DIR_sed}\//g" tmp.txt > tmp_IGCM_sys_RshPost_$$ |
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| 287 | # \mv tmp.txt tmp_IGCM_sys_RshPost_$$ |
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[623] | 288 | # |
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[544] | 289 | # echo cat tmp_IGCM_sys_RshPost_$$ AFTER |
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| 290 | # cat tmp_IGCM_sys_RshPost_$$ |
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| 291 | # |
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| 292 | # /bin/ksh <tmp_IGCM_sys_RshPost_$$ |
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| 293 | # if [ $? -gt 0 ] ; then |
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| 294 | # echo "IGCM_sys_RshPost : erreur." |
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| 295 | # IGCM_debug_Exit "IGCM_sys_RshPost" |
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| 296 | # fi |
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| 297 | # # delete temporary file |
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| 298 | # \rm tmp_IGCM_sys_RshPost_$$ |
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| 299 | # |
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| 300 | # else |
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| 301 | # # number of tentative |
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| 302 | # NB_ESSAI=10 |
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| 303 | # # time delay between tentative |
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| 304 | # DELAI=10 |
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| 305 | # i=0 |
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| 306 | # while [ $i -ne $NB_ESSAI ] ; do |
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| 307 | # ssh -t titane996 ssh cesium /bin/ksh <tmp_IGCM_sys_RshPost_$$ |
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| 308 | # status=$? |
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| 309 | # if [ ${status} -ne 0 ]; |
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| 310 | # then |
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| 311 | # sleep $DELAI |
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| 312 | # else |
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| 313 | # break |
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| 314 | # fi |
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| 315 | # let i=$i+1 |
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| 316 | # done |
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| 317 | # # delete temporary file |
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| 318 | # \rm tmp_IGCM_sys_RshPost_$$ |
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| 319 | # |
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| 320 | # if [ ${status} -gt 0 ] ; then |
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| 321 | # echo "IGCM_sys_RshPost : erreur." |
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| 322 | # IGCM_debug_Exit "IGCM_sys_RshPost" |
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| 323 | # fi |
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| 324 | # fi |
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| 325 | |
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| 326 | # ============ CESIUM END ============ # |
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| 327 | |
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| 328 | IGCM_debug_PopStack "IGCM_sys_RshPost" |
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[222] | 329 | } |
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| 330 | |
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| 331 | #D-#================================================== |
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| 332 | #D-function IGCM_sys_SendMail |
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| 333 | #D-* Purpose: Send mail when simulation is over |
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| 334 | #D-* Examples: |
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| 335 | #D- |
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| 336 | function IGCM_sys_SendMail { |
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[544] | 337 | IGCM_debug_PushStack "IGCM_sys_SendMail" $@ |
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| 338 | if ( $DEBUG_sys ) ; then |
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| 339 | echo "IGCM_sys_SendMail :" $@ |
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| 340 | fi |
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[222] | 341 | |
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[544] | 342 | if ( ${ExitFlag} ) ; then |
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| 343 | status=failed |
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| 344 | else |
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| 345 | status=completed |
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| 346 | fi |
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[452] | 347 | |
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[222] | 348 | cat << END_MAIL > job_end.mail |
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| 349 | Dear ${LOGIN}, |
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| 350 | |
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[452] | 351 | Simulation ${config_UserChoices_JobName} is ${status} on supercomputer `hostname`. |
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[222] | 352 | Job started : ${DateBegin} |
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| 353 | Job ended : ${DateEnd} |
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[434] | 354 | Output files are available in ${R_SAVE} |
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[616] | 355 | Files to be rebuild are temporarily available in ${REBUILD_DIR} |
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| 356 | Pre-packed files are temporarily available in ${R_BUFR} |
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[452] | 357 | Script files, Script Outputs and Debug files (if necessary) are available in ${SUBMIT_DIR} |
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[222] | 358 | END_MAIL |
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| 359 | |
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| 360 | if [ ! -z ${config_UserChoices_MailName} ] ; then |
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[623] | 361 | mail -s "${config_UserChoices_JobName} ${status}" ${config_UserChoices_MailName} < job_end.mail |
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[222] | 362 | elif [ -f ~/.forward ] ; then |
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[623] | 363 | mail -s "${config_UserChoices_JobName} ${status}" $( cat ~/.forward ) < job_end.mail |
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[222] | 364 | fi |
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| 365 | sleep 10 |
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| 366 | rm -f job_end.mail |
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| 367 | |
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[544] | 368 | if [ $? -gt 0 ] ; then |
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| 369 | echo "IGCM_sys_SendMail : erreur." |
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| 370 | IGCM_debug_Exit "IGCM_sys_SendMail" |
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| 371 | fi |
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| 372 | IGCM_debug_PopStack "IGCM_sys_SendMail" |
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[222] | 373 | } |
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| 374 | |
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| 375 | #D-#================================================== |
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| 376 | #D-function IGCM_sys_Mkdir |
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| 377 | #D-* Purpose: Master locale mkdir command |
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| 378 | #D-* Examples: |
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| 379 | #D- |
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| 380 | function IGCM_sys_Mkdir { |
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[544] | 381 | IGCM_debug_PushStack "IGCM_sys_Mkdir" $@ |
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| 382 | if ( $DEBUG_sys ) ; then |
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| 383 | echo "IGCM_sys_Mkdir :" $@ |
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| 384 | fi |
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| 385 | if [ ! -d ${1} ]; then |
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| 386 | \mkdir -p $1 |
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| 387 | if [ $? -gt 0 ] ; then |
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| 388 | echo "IGCM_sys_Mkdir : erreur." |
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| 389 | IGCM_debug_Exit "IGCM_sys_Mkdir" |
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[222] | 390 | fi |
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[544] | 391 | fi |
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| 392 | # vérification : |
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| 393 | if [ ! -d ${1} ] ; then |
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| 394 | echo "IGCM_sys_Mkdir : erreur." |
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| 395 | IGCM_debug_Exit "IGCM_sys_Mkdir" |
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| 396 | fi |
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| 397 | IGCM_debug_PopStack "IGCM_sys_Mkdir" |
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[222] | 398 | } |
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| 399 | |
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| 400 | #D-#================================================== |
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| 401 | #D-function IGCM_sys_MkdirArchive |
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| 402 | #D-* Purpose: Mkdir on Archive |
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| 403 | #D-* Examples: |
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| 404 | #D- |
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| 405 | function IGCM_sys_MkdirArchive { |
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[544] | 406 | IGCM_debug_PushStack "IGCM_sys_MkdirArchive" $@ |
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| 407 | if ( $DEBUG_sys ) ; then |
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| 408 | echo "IGCM_sys_MkdirArchive :" $@ |
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| 409 | fi |
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| 410 | #- creation de repertoire sur le serveur fichier |
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[623] | 411 | if [ ! -d ${1} ]; then |
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[544] | 412 | \mkdir -p $1 |
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| 413 | if [ $? -gt 0 ] ; then |
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| 414 | echo "IGCM_sys_MkdirArchive : erreur." |
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| 415 | IGCM_debug_Exit "IGCM_sys_MkdirArchive" |
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[222] | 416 | fi |
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[544] | 417 | fi |
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| 418 | IGCM_debug_PopStack "IGCM_sys_MkdirArchive" |
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[222] | 419 | } |
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| 420 | |
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| 421 | #D-#================================================== |
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| 422 | #D-function IGCM_sys_MkdirWork |
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| 423 | #D-* Purpose: Mkdir on Work |
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| 424 | #D-* Examples: |
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| 425 | #D- |
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| 426 | function IGCM_sys_MkdirWork { |
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[544] | 427 | IGCM_debug_PushStack "IGCM_sys_MkdirWork" $@ |
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| 428 | if ( $DEBUG_sys ) ; then |
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| 429 | echo "IGCM_sys_MkdirWork :" $@ |
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| 430 | fi |
---|
| 431 | #- creation de repertoire sur le serveur fichier |
---|
[623] | 432 | if [ ! -d ${1} ]; then |
---|
[544] | 433 | \mkdir -p $1 |
---|
| 434 | if [ $? -gt 0 ] ; then |
---|
| 435 | echo "IGCM_sys_MkdirWork : erreur." |
---|
| 436 | IGCM_debug_Exit "IGCM_sys_MkdirWork" |
---|
[222] | 437 | fi |
---|
[544] | 438 | fi |
---|
| 439 | IGCM_debug_PopStack "IGCM_sys_MkdirWork" |
---|
[222] | 440 | } |
---|
| 441 | |
---|
| 442 | #D-#================================================== |
---|
| 443 | #D-function IGCM_sys_Cd |
---|
| 444 | #D-* Purpose: master cd command |
---|
| 445 | #D-* Examples: |
---|
| 446 | #D- |
---|
| 447 | function IGCM_sys_Cd { |
---|
[544] | 448 | IGCM_debug_PushStack "IGCM_sys_Cd" $@ |
---|
| 449 | if ( $DEBUG_sys ) ; then |
---|
| 450 | echo "IGCM_sys_Cd :" $@ |
---|
| 451 | fi |
---|
| 452 | \cd $1 |
---|
| 453 | if [ $? -gt 0 ] ; then |
---|
| 454 | echo "IGCM_sys_Cd : erreur." |
---|
| 455 | IGCM_debug_Exit "IGCM_sys_Cd" |
---|
| 456 | fi |
---|
| 457 | IGCM_debug_PopStack "IGCM_sys_Cd" |
---|
[222] | 458 | } |
---|
| 459 | |
---|
| 460 | #D-#================================================== |
---|
| 461 | #D-function IGCM_sys_Chmod |
---|
| 462 | #D-* Purpose: Chmod |
---|
| 463 | #D-* Examples: |
---|
| 464 | #D- |
---|
| 465 | function IGCM_sys_Chmod { |
---|
[544] | 466 | IGCM_debug_PushStack "IGCM_sys_Chmod" -- $@ |
---|
| 467 | if ( $DEBUG_sys ) ; then |
---|
| 468 | echo "IGCM_sys_Chmod :" $@ |
---|
| 469 | fi |
---|
| 470 | if [ $DRYRUN -le 1 ]; then |
---|
| 471 | \chmod $@ |
---|
| 472 | if [ $? -gt 0 ] ; then |
---|
| 473 | echo "IGCM_sys_Chmod : erreur." |
---|
| 474 | IGCM_debug_Exit "IGCM_sys_Chmod" |
---|
[222] | 475 | fi |
---|
[544] | 476 | else |
---|
| 477 | ( ${DEBUG_debug} ) && echo "DRYRUN mode = " $DRYRUN >> stack |
---|
| 478 | fi |
---|
| 479 | IGCM_debug_PopStack "IGCM_sys_Chmod" |
---|
[222] | 480 | } |
---|
| 481 | |
---|
| 482 | #D-#================================================== |
---|
| 483 | #D-function IGCM_sys_FileSize |
---|
| 484 | #D-* Purpose: Filesize |
---|
| 485 | #D-* Examples: |
---|
| 486 | #D- |
---|
| 487 | function IGCM_sys_FileSize { |
---|
[544] | 488 | IGCM_debug_PushStack "IGCM_sys_FileSize" $@ |
---|
[222] | 489 | |
---|
[544] | 490 | typeset sizeF |
---|
| 491 | set +A sizeF -- $( ls -la ${1} ) |
---|
| 492 | if [ $? -gt 0 ] ; then |
---|
| 493 | IGCM_debug_Exit "IGCM_sys_FileSize" |
---|
| 494 | fi |
---|
| 495 | eval ${2}=${sizeF[4]} |
---|
[222] | 496 | |
---|
[544] | 497 | IGCM_debug_PopStack "IGCM_sys_FileSize" |
---|
[222] | 498 | } |
---|
| 499 | |
---|
| 500 | #D-#================================================== |
---|
| 501 | #D-function IGCM_sys_TestDir |
---|
| 502 | #D-* Purpose: Test Directory that must exists |
---|
| 503 | #D-* Examples: |
---|
| 504 | #D- |
---|
| 505 | function IGCM_sys_TestDir { |
---|
[544] | 506 | IGCM_debug_PushStack "IGCM_sys_TestDir" $@ |
---|
| 507 | if ( $DEBUG_sys ) ; then |
---|
| 508 | echo "IGCM_sys_TestDir :" $@ |
---|
| 509 | fi |
---|
| 510 | typeset ExistFlag |
---|
| 511 | ExistFlag=$( [ -d $1 ] && echo 0 || echo 1 ) |
---|
| 512 | IGCM_debug_PopStack "IGCM_sys_TestDir" |
---|
[222] | 513 | |
---|
[544] | 514 | return ${ExistFlag} |
---|
[222] | 515 | } |
---|
| 516 | |
---|
| 517 | #D-#================================================== |
---|
| 518 | #D-function IGCM_sys_TestDirArchive |
---|
| 519 | #D-* Purpose: Test Directory that must exists on Archive |
---|
| 520 | #D-* Examples: |
---|
| 521 | #D- |
---|
| 522 | function IGCM_sys_TestDirArchive { |
---|
[544] | 523 | IGCM_debug_PushStack "IGCM_sys_TestDirArchive" $@ |
---|
| 524 | if ( $DEBUG_sys ) ; then |
---|
| 525 | echo "IGCM_sys_TestDirArchive :" $@ |
---|
| 526 | fi |
---|
| 527 | typeset ExistFlag |
---|
| 528 | ExistFlag=$( [ -d $1 ] && echo 0 || echo 1 ) |
---|
| 529 | IGCM_debug_PopStack "IGCM_sys_TestDirArchive" |
---|
[222] | 530 | |
---|
[544] | 531 | return ${ExistFlag} |
---|
[222] | 532 | } |
---|
| 533 | |
---|
| 534 | #D-#================================================== |
---|
[548] | 535 | #D-function IGCM_sys_IsFileArchived |
---|
| 536 | #D-* Purpose: Test file that must NOT EXISTS on Archive |
---|
| 537 | #D-* Examples: |
---|
| 538 | #D- |
---|
| 539 | function IGCM_sys_IsFileArchived { |
---|
| 540 | IGCM_debug_PushStack "IGCM_sys_IsFileArchived" $@ |
---|
| 541 | if ( $DEBUG_sys ) ; then |
---|
| 542 | echo "IGCM_sys_IsFileArchived :" $@ |
---|
| 543 | fi |
---|
| 544 | typeset IsArchivedFlag |
---|
[618] | 545 | IsArchivedFlag=$( [ X$( echo $1 | grep ^\/ccc\/store ) != X ] && echo 0 || echo 1 ) |
---|
[548] | 546 | IGCM_debug_PopStack "IGCM_sys_IsFileArchived" |
---|
| 547 | |
---|
| 548 | return ${IsArchivedFlag} |
---|
| 549 | } |
---|
| 550 | |
---|
| 551 | #D-#================================================== |
---|
[222] | 552 | #D-function IGCM_sys_TestFileArchive |
---|
| 553 | #D-* Purpose: Test file that must NOT EXISTS on Archive |
---|
| 554 | #D-* Examples: |
---|
| 555 | #D- |
---|
| 556 | function IGCM_sys_TestFileArchive { |
---|
[544] | 557 | IGCM_debug_PushStack "IGCM_sys_TestFileArchive" $@ |
---|
| 558 | typeset ExistFlag |
---|
| 559 | ExistFlag=$( [ -f $1 ] && echo 0 || echo 1 ) |
---|
| 560 | IGCM_debug_PopStack "IGCM_sys_TestFileArchive" |
---|
[222] | 561 | |
---|
[544] | 562 | return ${ExistFlag} |
---|
[222] | 563 | } |
---|
| 564 | |
---|
| 565 | #D-#================================================== |
---|
[544] | 566 | #D-function IGCM_sys_TestFileBuffer |
---|
| 567 | #D-* Purpose: Test file that must NOT EXISTS on Buffer |
---|
| 568 | #D-* Examples: |
---|
| 569 | #D- |
---|
| 570 | function IGCM_sys_TestFileBuffer { |
---|
| 571 | IGCM_debug_PushStack "IGCM_sys_TestFileBuffer" $@ |
---|
| 572 | typeset ExistFlag |
---|
| 573 | ExistFlag=$( [ -f $1 ] && echo 0 || echo 1 ) |
---|
| 574 | IGCM_debug_PopStack "IGCM_sys_TestFileBuffer" |
---|
| 575 | |
---|
| 576 | return ${ExistFlag} |
---|
| 577 | } |
---|
| 578 | |
---|
| 579 | #D-#================================================== |
---|
[222] | 580 | #D-function IGCM_sys_CountFileArchive |
---|
| 581 | #D-* Purpose: Count files on Archive filesystem |
---|
| 582 | #D-* Examples: |
---|
| 583 | #D- |
---|
| 584 | function IGCM_sys_CountFileArchive { |
---|
[544] | 585 | IGCM_debug_PushStack "IGCM_sys_CountFileArchive" $@ |
---|
| 586 | ls ${@} 2>/dev/null | wc -l |
---|
| 587 | if [ $? -gt 0 ] ; then |
---|
| 588 | echo "IGCM_sys_CountFileArchive : erreur." |
---|
| 589 | fi |
---|
| 590 | IGCM_debug_PopStack "IGCM_sys_CountFileArchive" |
---|
[222] | 591 | } |
---|
| 592 | |
---|
| 593 | #D-#================================================== |
---|
[544] | 594 | #D-function IGCM_sys_CountFileBuffer |
---|
| 595 | #D-* Purpose: Count files on Scratch filesystem |
---|
| 596 | #D-* Examples: |
---|
| 597 | #D- |
---|
| 598 | function IGCM_sys_CountFileBuffer { |
---|
| 599 | IGCM_debug_PushStack "IGCM_sys_CountFileBuffer" $@ |
---|
| 600 | ls ${@} 2>/dev/null | wc -l |
---|
| 601 | if [ $? -gt 0 ] ; then |
---|
| 602 | echo "IGCM_sys_CountFileBuffer : erreur." |
---|
| 603 | fi |
---|
| 604 | IGCM_debug_PopStack "IGCM_sys_CountFileBuffer" |
---|
| 605 | } |
---|
| 606 | |
---|
| 607 | #D-#================================================== |
---|
[222] | 608 | #D-function IGCM_sys_Tree |
---|
| 609 | #D-* Purpose: Tree directories with files on ${ARCHIVE} |
---|
| 610 | #D-* Examples: IGCM_sys_Tree ${R_IN} ${R_OUT} |
---|
| 611 | #D- |
---|
| 612 | function IGCM_sys_Tree { |
---|
[544] | 613 | IGCM_debug_PushStack "IGCM_sys_Tree" $@ |
---|
| 614 | if ( $DEBUG_sys ) ; then |
---|
| 615 | echo "IGCM_sys_Tree :" $@ |
---|
| 616 | fi |
---|
[222] | 617 | |
---|
[544] | 618 | \ls -lR ${@} |
---|
[222] | 619 | |
---|
[544] | 620 | IGCM_debug_PopStack "IGCM_sys_Tree" |
---|
[222] | 621 | } |
---|
| 622 | |
---|
| 623 | #D-#================================================== |
---|
| 624 | #D-function IGCM_sys_Tar |
---|
[544] | 625 | #D-* Purpose: master tar command |
---|
[222] | 626 | #D-* Examples: |
---|
| 627 | #D- |
---|
| 628 | function IGCM_sys_Tar { |
---|
[544] | 629 | IGCM_debug_PushStack "IGCM_sys_Tar" $@ |
---|
| 630 | if ( $DEBUG_sys ) ; then |
---|
| 631 | echo "IGCM_sys_Tar :" $@ |
---|
| 632 | fi |
---|
| 633 | \tar cf $@ |
---|
| 634 | if [ $? -gt 0 ] ; then |
---|
| 635 | echo "IGCM_sys_Tar : erreur." |
---|
| 636 | IGCM_debug_Exit "IGCM_sys_Tar" |
---|
| 637 | fi |
---|
| 638 | IGCM_debug_PopStack "IGCM_sys_Tar" |
---|
[222] | 639 | } |
---|
| 640 | |
---|
| 641 | #D-#================================================== |
---|
| 642 | #D-function IGCM_sys_UnTar |
---|
| 643 | #D-* Purpose: master un-tar command |
---|
| 644 | #D-* Examples: |
---|
| 645 | #D- |
---|
| 646 | function IGCM_sys_UnTar { |
---|
[544] | 647 | IGCM_debug_PushStack "IGCM_sys_UnTar" $@ |
---|
| 648 | if ( $DEBUG_sys ) ; then |
---|
| 649 | echo "IGCM_sys_UnTar :" $@ |
---|
| 650 | fi |
---|
| 651 | \tar xvf $1 |
---|
| 652 | if [ $? -gt 0 ] ; then |
---|
| 653 | echo "IGCM_sys_UnTar : erreur." |
---|
| 654 | IGCM_debug_Exit "IGCM_sys_UnTar" |
---|
| 655 | fi |
---|
| 656 | IGCM_debug_PopStack "IGCM_sys_UnTar" |
---|
[222] | 657 | } |
---|
| 658 | |
---|
| 659 | #D-#================================================== |
---|
| 660 | #D-function IGCM_sys_Qsub |
---|
| 661 | #D-* Purpose: Qsub new job |
---|
| 662 | #D-* Examples: |
---|
| 663 | #D- |
---|
| 664 | function IGCM_sys_Qsub { |
---|
[544] | 665 | IGCM_debug_PushStack "IGCM_sys_Qsub" $@ |
---|
| 666 | if ( $DEBUG_sys ) ; then |
---|
| 667 | echo "IGCM_sys_Qsub :" $@ |
---|
| 668 | fi |
---|
| 669 | typeset options |
---|
| 670 | if [ ${config_UserChoices_JobName}.${CumulPeriod} = "." ] ; then |
---|
| 671 | options=" -o ${Script_Output} -e ${Script_Output}" |
---|
| 672 | else |
---|
| 673 | options=" -o ${Script_Output} -e ${Script_Output} -r ${config_UserChoices_JobName}.${CumulPeriod}" |
---|
| 674 | fi |
---|
[467] | 675 | |
---|
[544] | 676 | /usr/local/bin/ccc_msub ${options} < $1 |
---|
| 677 | if [ $? -gt 0 ] ; then |
---|
| 678 | echo "IGCM_sys_Qsub : erreur ${options} $1" |
---|
| 679 | IGCM_debug_Exit "IGCM_sys_Qsub" |
---|
| 680 | fi |
---|
| 681 | IGCM_debug_PopStack "IGCM_sys_Qsub" |
---|
[222] | 682 | } |
---|
| 683 | |
---|
| 684 | #D-#================================================== |
---|
| 685 | #D-function IGCM_sys_QsubPost |
---|
| 686 | #D-* Purpose: Qsub new job on scalaire |
---|
| 687 | #D-* Examples: |
---|
| 688 | #D- |
---|
| 689 | function IGCM_sys_QsubPost { |
---|
[544] | 690 | IGCM_debug_PushStack "IGCM_sys_QsubPost" $@ |
---|
| 691 | if ( $DEBUG_sys ) ; then |
---|
| 692 | echo "IGCM_sys_QsubPost :" $@ |
---|
| 693 | fi |
---|
| 694 | |
---|
| 695 | # Need to export listVarEnv for cesium |
---|
| 696 | # NO Need to export listVarEnv for titane |
---|
| 697 | # ============ FRONTEND START ============ # |
---|
| 698 | |
---|
| 699 | /usr/local/bin/ccc_msub -p ${BRIDGE_MSUB_PROJECT} -o ${POST_DIR}/${Script_Post_Output}.out -e ${POST_DIR}/${Script_Post_Output}.out ${libIGCM_POST}/$1.job |
---|
| 700 | |
---|
| 701 | # ============ FRONTEND END ============ # |
---|
| 702 | |
---|
| 703 | # ============ CESIUM START ============ # |
---|
| 704 | # typeset NB_ESSAI DELAI status i |
---|
| 705 | # # number of tentative |
---|
| 706 | # NB_ESSAI=10 |
---|
| 707 | # # time delay between tentative |
---|
| 708 | # DELAI=10 |
---|
| 709 | # (( i = 0 )) |
---|
| 710 | # while [ $i -lt $NB_ESSAI ] ; do |
---|
| 711 | # /usr/local/bin/ccc_msub -o ${POST_DIR}/${Script_Post_Output}.out -e ${POST_DIR}/${Script_Post_Output}.e.out -E "-v ${listVarEnv}" ${libIGCM_POST}/$1.job |
---|
| 712 | # status=$? |
---|
| 713 | # if [ ${status} -gt 0 ]; then |
---|
| 714 | # sleep $DELAI |
---|
| 715 | # else |
---|
| 716 | # break |
---|
| 717 | # fi |
---|
| 718 | # (( i = i + 1 )) |
---|
[623] | 719 | # done |
---|
[544] | 720 | # ============ CESIUM END ============ # |
---|
| 721 | |
---|
| 722 | if [ $? -gt 0 ] ; then |
---|
| 723 | echo "IGCM_sys_QsubPost : erreur " $@ |
---|
| 724 | IGCM_debug_Exit "IGCM_sys_QsubPost" |
---|
| 725 | fi |
---|
| 726 | IGCM_debug_PopStack "IGCM_sys_QsubPost" |
---|
[222] | 727 | } |
---|
| 728 | |
---|
| 729 | #D-************************* |
---|
[623] | 730 | #D- File transfer functions |
---|
[222] | 731 | #D-************************* |
---|
| 732 | #D- |
---|
| 733 | |
---|
| 734 | #D-#================================================== |
---|
| 735 | #D-function IGCM_sys_Rsync_out |
---|
| 736 | #D-* Purpose: treat return val of rsync |
---|
| 737 | #D-* Examples: IGCM_sys_Rsync_out out_RET_rsync |
---|
| 738 | #D- Error values and explanations can depend on your system version. |
---|
| 739 | function IGCM_sys_Rsync_out { |
---|
[544] | 740 | RET=$1 |
---|
| 741 | if [ ! $RET ] ; then |
---|
| 742 | echo "rsync error !" |
---|
| 743 | fi |
---|
[222] | 744 | |
---|
[544] | 745 | if [ $MYLANG = "fr" ]; then |
---|
| 746 | case $RET in |
---|
| 747 | 0) return ;; |
---|
| 748 | 1) echo "Erreur de rsync ; RERR_SYNTAX : " |
---|
| 749 | echo "Erreur de syntaxe ou d'utilisation." |
---|
| 750 | return;; |
---|
| 751 | 2) echo "Erreur de rsync ; RERR_PROTOCOL : " |
---|
| 752 | echo "Incompatibilité de protocole." |
---|
| 753 | return;; |
---|
| 754 | 3) echo "Erreur de rsync ; RERR_FILESELECT 3" |
---|
| 755 | echo "Erreurs lors de la sélection des fichiers d'entrée sortie et" |
---|
| 756 | echo "répertoires" |
---|
| 757 | return;; |
---|
| 758 | 4) echo "Erreur de rsync ; RERR_UNSUPPORTED" |
---|
| 759 | echo "Action demandée non supportée : une tentative de manipulation de" |
---|
| 760 | echo "fichiers 64-bits sur une plate-forme qui ne les supporte pas a" |
---|
| 761 | echo "été faite ; ou une option qui est supportée par le client mais" |
---|
| 762 | echo "pas par le serveur a été spécifiée." |
---|
| 763 | return;; |
---|
| 764 | 10) echo "Erreur de rsync ; RERR_SOCKETIO" |
---|
| 765 | echo "Erreur dans le socket d'entrée sortie" |
---|
| 766 | return;; |
---|
| 767 | 11) echo "Erreur de rsync ; RERR_FILEIO" |
---|
| 768 | echo "Erreur d'entrée sortie fichier" |
---|
| 769 | return;; |
---|
| 770 | 12) echo "Erreur de rsync ; RERR_STREAMIO" |
---|
| 771 | echo "Erreur dans flux de donnée du protocole rsync" |
---|
| 772 | return;; |
---|
| 773 | 13) echo "Erreur de rsync ; RERR_MESSAGEIO" |
---|
| 774 | echo "Erreur avec les diagnostics du programme" |
---|
| 775 | return;; |
---|
| 776 | 14) echo "Erreur de rsync ; RERR_IPC" |
---|
| 777 | echo "Erreur dans le code IPC" |
---|
| 778 | return;; |
---|
| 779 | 20) echo "Erreur de rsync ; RERR_SIGNAL" |
---|
| 780 | echo "SIGUSR1 ou SIGINT reçu" |
---|
| 781 | return;; |
---|
| 782 | 21) echo "Erreur de rsync ; RERR_WAITCHILD" |
---|
| 783 | echo "Une erreur retournée par waitpid()" |
---|
| 784 | return;; |
---|
| 785 | 22) echo "Erreur de rsync ; RERR_MALLOC" |
---|
| 786 | echo "Erreur lors de l'allocation des tampons de mémoire de coeur" |
---|
| 787 | return;; |
---|
| 788 | 23) echo "" |
---|
| 789 | echo "Erreur fichier inexistant" |
---|
| 790 | return;; |
---|
| 791 | 30) echo "Erreur de rsync ; RERR_TIMEOUT" |
---|
| 792 | echo "Temps d'attente écoulé dans l'envoi/réception de données" |
---|
| 793 | return;; |
---|
| 794 | *) echo "Erreur de rsync : code de retour de rsync inconnu :" $RET |
---|
| 795 | return;; |
---|
| 796 | esac |
---|
| 797 | elif [ $MYLANG = "en" ] ; then |
---|
| 798 | case $RET in |
---|
[623] | 799 | 0) return;; |
---|
[544] | 800 | 1) echo "rsync error : Syntax or usage error " |
---|
| 801 | return;; |
---|
| 802 | 2) echo "rsync error : Protocol incompatibility " |
---|
| 803 | return;; |
---|
| 804 | 3) echo "rsync error : Errors selecting input/output files, dirs" |
---|
| 805 | return;; |
---|
| 806 | 4) echo "rsync error : Requested action not supported: an attempt" |
---|
| 807 | echo "was made to manipulate 64-bit files on a platform that cannot support" |
---|
| 808 | echo "them; or an option was specified that is supported by the client and" |
---|
| 809 | echo "not by the server." |
---|
| 810 | return;; |
---|
| 811 | 5) echo "rsync error : Error starting client-server protocol" |
---|
| 812 | return;; |
---|
| 813 | 10) echo "rsync error : Error in socket I/O " |
---|
| 814 | return;; |
---|
| 815 | 11) echo "rsync error : Error in file I/O " |
---|
| 816 | return;; |
---|
| 817 | 12) echo "rsync error : Error in rsync protocol data stream " |
---|
| 818 | return;; |
---|
| 819 | 13) echo "rsync error : Errors with program diagnostics " |
---|
| 820 | return;; |
---|
| 821 | 14) echo "rsync error : Error in IPC code " |
---|
| 822 | return;; |
---|
| 823 | 20) echo "rsync error : Received SIGUSR1 or SIGINT " |
---|
| 824 | return;; |
---|
| 825 | 21) echo "rsync error : Some error returned by waitpid() " |
---|
| 826 | return;; |
---|
| 827 | 22) echo "rsync error : Error allocating core memory buffers " |
---|
| 828 | return;; |
---|
| 829 | 23) echo "rsync error : Partial transfer due to error" |
---|
| 830 | return;; |
---|
| 831 | 24) echo "rsync error : Partial transfer due to vanished source files" |
---|
| 832 | return;; |
---|
| 833 | 30) echo "rsync error : Timeout in data send/receive " |
---|
| 834 | return;; |
---|
| 835 | *) echo "rsync error : return code of rsync unknown :" $RET |
---|
| 836 | return;; |
---|
| 837 | esac |
---|
| 838 | else |
---|
| 839 | echo "unknown language $MYLANG." |
---|
| 840 | return |
---|
| 841 | fi |
---|
[222] | 842 | } |
---|
| 843 | |
---|
| 844 | #D-#================================================== |
---|
| 845 | #D-function IGCM_sys_Miror_libIGCM |
---|
| 846 | #D-* Purpose: Mirror libIGCM PATH and lib to cesium |
---|
| 847 | #D-* Examples: |
---|
| 848 | #D- |
---|
| 849 | function IGCM_sys_Mirror_libIGCM { |
---|
[544] | 850 | IGCM_debug_PushStack "IGCM_sys_Mirror_libIGCM" |
---|
| 851 | if ( $DEBUG_sys ) ; then |
---|
| 852 | echo "IGCM_sys_Mirror_libIGCM" |
---|
| 853 | fi |
---|
[222] | 854 | |
---|
[544] | 855 | typeset RET DEST |
---|
[222] | 856 | |
---|
[544] | 857 | mkdir -p ${HOME}/MIRROR/${PATHlibIGCM} |
---|
[222] | 858 | |
---|
[544] | 859 | echo ${RSYNC} ${RSYNC_opt} ${libIGCM} ${HOME}/MIRROR/${PATHlibIGCM} > out_rsync 2>&1 |
---|
| 860 | ${RSYNC} ${RSYNC_opt} ${libIGCM} ${HOME}/MIRROR/${PATHlibIGCM} >> out_rsync 2>&1 |
---|
| 861 | RET=$? |
---|
[222] | 862 | |
---|
[544] | 863 | if [ ${RET} -gt 0 ] ; then |
---|
| 864 | echo "IGCM_sys_Mirror_libIGCM Warning : no libIGCM on cesium." |
---|
| 865 | cat out_rsync |
---|
| 866 | fi |
---|
| 867 | IGCM_debug_PopStack "IGCM_sys_Mirror_libIGCM" |
---|
[222] | 868 | } |
---|
| 869 | |
---|
| 870 | #D-#================================================== |
---|
| 871 | #D-function IGCM_sys_Cp |
---|
| 872 | #D-* Purpose: generic cp |
---|
| 873 | #D-* Examples: |
---|
| 874 | #D- |
---|
| 875 | function IGCM_sys_Cp { |
---|
[544] | 876 | IGCM_debug_PushStack "IGCM_sys_Cp" $@ |
---|
| 877 | if ( $DEBUG_sys ) ; then |
---|
| 878 | echo "IGCM_sys_Cp :" $@ |
---|
| 879 | fi |
---|
[222] | 880 | |
---|
[544] | 881 | typeset RET |
---|
[222] | 882 | |
---|
[544] | 883 | echo cp $@ > out_rsync 2>&1 |
---|
| 884 | \cp $@ >> out_rsync 2>&1 |
---|
| 885 | RET=$? |
---|
[222] | 886 | |
---|
[544] | 887 | if [ ${RET} -gt 0 ] ; then |
---|
| 888 | echo "IGCM_sys_Cp : error." |
---|
| 889 | cat out_rsync |
---|
| 890 | IGCM_debug_Exit "IGCM_sys_Cp" |
---|
| 891 | else |
---|
| 892 | \rm out_rsync |
---|
| 893 | fi |
---|
| 894 | IGCM_debug_PopStack "IGCM_sys_Cp" |
---|
[222] | 895 | } |
---|
| 896 | |
---|
| 897 | #D-#================================================== |
---|
| 898 | #D-function IGCM_sys_Rm |
---|
| 899 | #D-* Purpose: generic rm |
---|
| 900 | #D-* Examples: |
---|
| 901 | #D- |
---|
| 902 | function IGCM_sys_Rm { |
---|
[544] | 903 | IGCM_debug_PushStack "IGCM_sys_Rm" -- $@ |
---|
| 904 | if ( $DEBUG_sys ) ; then |
---|
| 905 | echo "IGCM_sys_Rm :" $@ |
---|
| 906 | fi |
---|
[222] | 907 | |
---|
[544] | 908 | typeset RET |
---|
[222] | 909 | |
---|
[544] | 910 | echo rm $@ > out_rsync 2>&1 |
---|
| 911 | \rm $@ >> out_rsync 2>&1 |
---|
| 912 | RET=$? |
---|
[222] | 913 | |
---|
[544] | 914 | if [ ${RET} -gt 0 ] ; then |
---|
| 915 | echo "IGCM_sys_Rm : error." |
---|
| 916 | cat out_rsync |
---|
| 917 | IGCM_debug_Exit "IGCM_sys_Rm" |
---|
| 918 | else |
---|
| 919 | \rm out_rsync |
---|
| 920 | fi |
---|
| 921 | IGCM_debug_PopStack "IGCM_sys_Rm" |
---|
[222] | 922 | } |
---|
| 923 | |
---|
| 924 | #D-#================================================== |
---|
[467] | 925 | #D-function IGCM_sys_RmRunDir |
---|
| 926 | #D-* Purpose: rm tmpdir (dummy function most of the time batch |
---|
| 927 | #D- scheduler will do the job) |
---|
| 928 | #D-* Examples: |
---|
| 929 | #D- |
---|
| 930 | function IGCM_sys_RmRunDir { |
---|
[544] | 931 | IGCM_debug_PushStack "IGCM_sys_RmRunDir" -- $@ |
---|
| 932 | if ( $DEBUG_sys ) ; then |
---|
| 933 | echo "IGCM_sys_RmRunDir :" $@ |
---|
| 934 | fi |
---|
[467] | 935 | |
---|
[544] | 936 | typeset RET |
---|
[467] | 937 | |
---|
[544] | 938 | echo rm $@ > out_rsync 2>&1 |
---|
| 939 | \rm $@ >> out_rsync 2>&1 |
---|
| 940 | RET=$? |
---|
[467] | 941 | |
---|
[544] | 942 | if [ ${RET} -gt 0 ] ; then |
---|
| 943 | echo "IGCM_sys_RmRunDir : error." |
---|
| 944 | cat out_rsync |
---|
| 945 | IGCM_debug_Exit "IGCM_sys_RmRunDir" |
---|
| 946 | else |
---|
| 947 | \rm out_rsync |
---|
| 948 | fi |
---|
| 949 | IGCM_debug_PopStack "IGCM_sys_RmRunDir" |
---|
[467] | 950 | } |
---|
| 951 | |
---|
| 952 | #D-#================================================== |
---|
[222] | 953 | #D-function IGCM_sys_Mv |
---|
| 954 | #D-* Purpose: generic move |
---|
| 955 | #D-* Examples: |
---|
| 956 | #D- |
---|
| 957 | function IGCM_sys_Mv { |
---|
[544] | 958 | IGCM_debug_PushStack "IGCM_sys_Mv" $@ |
---|
| 959 | if ( $DEBUG_sys ) ; then |
---|
| 960 | echo "IGCM_sys_Mv :" $@ |
---|
| 961 | fi |
---|
[222] | 962 | |
---|
[544] | 963 | if [ $DRYRUN = 0 ]; then |
---|
[222] | 964 | |
---|
[544] | 965 | typeset RET |
---|
[623] | 966 | |
---|
[544] | 967 | echo mv $@ > out_rsync 2>&1 |
---|
| 968 | \mv $@ >> out_rsync 2>&1 |
---|
| 969 | RET=$? |
---|
[623] | 970 | |
---|
[544] | 971 | if [ ${RET} -gt 0 ] ; then |
---|
| 972 | echo "IGCM_sys_Mv : error in mv." |
---|
| 973 | cat out_rsync |
---|
| 974 | IGCM_debug_Exit "IGCM_sys_Mv" |
---|
[222] | 975 | else |
---|
[544] | 976 | \rm out_rsync |
---|
[222] | 977 | fi |
---|
[544] | 978 | else |
---|
| 979 | ( ${DEBUG_debug} ) && echo "DRYRUN mode = " $DRYRUN >> stack |
---|
| 980 | fi |
---|
[222] | 981 | |
---|
[544] | 982 | IGCM_debug_PopStack "IGCM_sys_Mv" |
---|
[222] | 983 | } |
---|
| 984 | |
---|
| 985 | #D-#================================================== |
---|
| 986 | #D-function IGCM_sys_Put_Dir |
---|
| 987 | #D-* Purpose: Copy a complete directory on $(ARCHIVE) |
---|
| 988 | #D-* Examples: |
---|
| 989 | #D- |
---|
| 990 | function IGCM_sys_Put_Dir { |
---|
[544] | 991 | IGCM_debug_PushStack "IGCM_sys_Put_Dir" $@ |
---|
| 992 | if ( $DEBUG_sys ) ; then |
---|
| 993 | echo "IGCM_sys_Put_Dir :" $@ |
---|
| 994 | fi |
---|
| 995 | if [ $DRYRUN = 0 ]; then |
---|
| 996 | if [ ! -d ${1} ] ; then |
---|
| 997 | echo "WARNING : IGCM_sys_Put_Dir ${1} DOES NOT EXIST ." |
---|
| 998 | IGCM_debug_PopStack "IGCM_sys_Put_Dir" |
---|
| 999 | return |
---|
[222] | 1000 | fi |
---|
| 1001 | |
---|
[544] | 1002 | typeset RET |
---|
[222] | 1003 | |
---|
[544] | 1004 | # Only if we use rsync |
---|
| 1005 | #IGCM_sys_TestDirArchive $( dirname $2 ) |
---|
| 1006 | # |
---|
| 1007 | #USUAL WAY |
---|
| 1008 | \cp -r $1 $2 > out_rsync 2>&1 |
---|
| 1009 | RET=$? |
---|
[222] | 1010 | |
---|
[544] | 1011 | if [ ${RET} -gt 0 ] ; then |
---|
| 1012 | echo "IGCM_sys_Put_Dir : error." |
---|
| 1013 | cat out_rsync |
---|
| 1014 | IGCM_debug_Exit "IGCM_sys_Put_Dir" |
---|
[222] | 1015 | else |
---|
[544] | 1016 | \rm out_rsync |
---|
[222] | 1017 | fi |
---|
[544] | 1018 | else |
---|
| 1019 | ( ${DEBUG_debug} ) && echo "DRYRUN mode = " $DRYRUN >> stack |
---|
| 1020 | fi |
---|
| 1021 | IGCM_debug_PopStack "IGCM_sys_Put_Dir" |
---|
[222] | 1022 | } |
---|
| 1023 | |
---|
| 1024 | #D-#================================================== |
---|
| 1025 | #D-function IGCM_sys_Get_Dir |
---|
[544] | 1026 | #D-* Purpose: Copy a complete directory from ${ARCHIVE} |
---|
[222] | 1027 | #D-* Examples: |
---|
| 1028 | #D- |
---|
| 1029 | function IGCM_sys_Get_Dir { |
---|
[544] | 1030 | IGCM_debug_PushStack "IGCM_sys_Get_Dir" $@ |
---|
| 1031 | if ( $DEBUG_sys ) ; then |
---|
| 1032 | echo "IGCM_sys_Get_Dir :" $@ |
---|
| 1033 | fi |
---|
| 1034 | if [ $DRYRUN = 0 ]; then |
---|
| 1035 | # if [ ! -d ${1} ] ; then |
---|
| 1036 | # echo "WARNING : IGCM_sys_Get_Dir ${1} DOES NOT EXIST ." |
---|
| 1037 | # IGCM_debug_PopStack "IGCM_sys_Get_Dir" |
---|
| 1038 | # return |
---|
| 1039 | # fi |
---|
[222] | 1040 | |
---|
[544] | 1041 | typeset RET |
---|
[222] | 1042 | |
---|
[544] | 1043 | # Only if we use rsync |
---|
| 1044 | #IGCM_sys_TestDirArchive $( dirname $2 ) |
---|
| 1045 | # |
---|
| 1046 | # USUAL WAY |
---|
| 1047 | # add dmfind/dmget (to demigrate all offline files) : |
---|
[587] | 1048 | #dmfind $1 -state MIG -o -state OFL -o -state PAR | dmget |
---|
[713] | 1049 | ccc_hsm get -r $1 |
---|
[544] | 1050 | \cp -r $1 $2 > out_rsync 2>&1 |
---|
| 1051 | RET=$? |
---|
[222] | 1052 | |
---|
[544] | 1053 | if [ ${RET} -gt 0 ] ; then |
---|
| 1054 | echo "IGCM_sys_Get_Dir : error." |
---|
| 1055 | cat out_rsync |
---|
| 1056 | IGCM_debug_Exit "IGCM_sys_Get_Dir" |
---|
[222] | 1057 | else |
---|
[544] | 1058 | \rm out_rsync |
---|
[222] | 1059 | fi |
---|
[544] | 1060 | else |
---|
| 1061 | ( ${DEBUG_debug} ) && echo "DRYRUN mode = " $DRYRUN >> stack |
---|
| 1062 | fi |
---|
| 1063 | IGCM_debug_PopStack "IGCM_sys_Get_Dir" |
---|
[222] | 1064 | } |
---|
| 1065 | |
---|
| 1066 | #D-#================================================== |
---|
| 1067 | #D-function IGCM_sys_Get_Master |
---|
| 1068 | #D-* Purpose: Copy a complete directory from MASTER filesystem |
---|
| 1069 | #D-* Examples: |
---|
| 1070 | #D- |
---|
| 1071 | function IGCM_sys_Get_Master { |
---|
[544] | 1072 | IGCM_debug_PushStack "IGCM_sys_Get_Master" $@ |
---|
| 1073 | if ( $DEBUG_sys ) ; then |
---|
| 1074 | echo "IGCM_sys_Get_Master :" $@ |
---|
| 1075 | fi |
---|
| 1076 | if [ $DRYRUN = 0 ]; then |
---|
[640] | 1077 | if ( [ ! -d ${1} ] && [ ! -f ${1} ] ) ; then |
---|
[544] | 1078 | echo "WARNING : IGCM_sys_Get_Master ${1} DOES NOT EXIST ." |
---|
| 1079 | IGCM_debug_PopStack "IGCM_sys_Get_Master" |
---|
| 1080 | return |
---|
[222] | 1081 | fi |
---|
| 1082 | |
---|
[544] | 1083 | typeset RET |
---|
[222] | 1084 | |
---|
[544] | 1085 | #USUAL WAY |
---|
[669] | 1086 | \cp -rL $1 $2 > out_rsync 2>&1 |
---|
[544] | 1087 | RET=$? |
---|
[222] | 1088 | |
---|
[544] | 1089 | if [ ${RET} -gt 0 ] ; then |
---|
| 1090 | echo "IGCM_sys_Get_Master : error." |
---|
| 1091 | cat out_rsync |
---|
| 1092 | IGCM_debug_Exit "IGCM_sys_Get_Master" |
---|
[222] | 1093 | else |
---|
[544] | 1094 | \rm out_rsync |
---|
[222] | 1095 | fi |
---|
[544] | 1096 | else |
---|
| 1097 | ( ${DEBUG_debug} ) && echo "DRYRUN mode = " $DRYRUN >> stack |
---|
| 1098 | fi |
---|
| 1099 | IGCM_debug_PopStack "IGCM_sys_Get_Master" |
---|
[222] | 1100 | } |
---|
| 1101 | |
---|
[689] | 1102 | #==================================================== |
---|
| 1103 | #- Call IGCM_sys_Mirror_libIGCM now ! |
---|
| 1104 | if ( $MirrorlibIGCM ) ; then |
---|
| 1105 | IGCM_sys_Mirror_libIGCM |
---|
| 1106 | fi |
---|
| 1107 | |
---|
[222] | 1108 | #D-#================================================== |
---|
| 1109 | #D-function IGCM_sys_Put_Rest |
---|
[544] | 1110 | #D-* Purpose: Put computied restarts on ${ARCHIVE}. |
---|
[222] | 1111 | #D- File and target directory must exist. |
---|
| 1112 | #D-* Examples: |
---|
| 1113 | #D- |
---|
| 1114 | function IGCM_sys_Put_Rest { |
---|
[544] | 1115 | IGCM_debug_PushStack "IGCM_sys_Put_Rest" $@ |
---|
| 1116 | if ( $DEBUG_sys ) ; then |
---|
| 1117 | echo "IGCM_sys_Put_Rest :" $@ |
---|
| 1118 | fi |
---|
| 1119 | if [ $DRYRUN = 0 ]; then |
---|
| 1120 | if [ ! -f ${1} ] ; then |
---|
| 1121 | echo "ERROR : IGCM_sys_Put_Rest ${1} DOES NOT EXIST ." |
---|
| 1122 | IGCM_debug_Exit "IGCM_sys_Put_Rest" |
---|
[222] | 1123 | fi |
---|
| 1124 | |
---|
[544] | 1125 | typeset RET |
---|
| 1126 | # |
---|
| 1127 | if [ X${JobType} = XRUN ] ; then |
---|
| 1128 | IGCM_sys_Chmod 444 ${1} |
---|
| 1129 | fi |
---|
[222] | 1130 | |
---|
[544] | 1131 | # |
---|
| 1132 | # USUAL WAY |
---|
| 1133 | \cp $1 $2 > out_rsync 2>&1 |
---|
| 1134 | RET=$? |
---|
| 1135 | |
---|
[623] | 1136 | # #RSYNC WITH NETWORK SSH CALL |
---|
| 1137 | # echo ${RSYNC} ${RSYNC_opt} -e ssh ${RUN_DIR}/$1 ${STOREHOST}:${2} > out_rsync 2>&1 |
---|
| 1138 | # ${RSYNC} ${RSYNC_opt} -e ssh ${RUN_DIR}/$1 ${STOREHOST}:${2} >> out_rsync 2>&1 |
---|
[222] | 1139 | |
---|
[623] | 1140 | # #RSYNC WITH NFS USE |
---|
| 1141 | # echo ${RSYNC} ${RSYNC_opt} ${RUN_DIR}/$1 ${2} > out_rsync 2>&1 |
---|
| 1142 | # ${RSYNC} ${RSYNC_opt} ${RUN_DIR}/$1 ${2} >> out_rsync 2>&1 |
---|
[222] | 1143 | |
---|
[623] | 1144 | # RET=$? |
---|
| 1145 | # IGCM_sys_Rsync_out $RET |
---|
[222] | 1146 | |
---|
[623] | 1147 | # ${libIGCM}/libIGCM_sys/IGCM_analyse_rsync_out.awk out_rsync |
---|
| 1148 | # (( RET=RET+$? )) |
---|
[222] | 1149 | |
---|
[544] | 1150 | if [ ${RET} -gt 0 ] ; then |
---|
| 1151 | echo "IGCM_sys_Put_Rest : error." |
---|
| 1152 | cat out_rsync |
---|
| 1153 | IGCM_debug_Exit "IGCM_sys_Put_Rest" |
---|
[222] | 1154 | else |
---|
[544] | 1155 | \rm out_rsync |
---|
[222] | 1156 | fi |
---|
[544] | 1157 | else |
---|
| 1158 | ( ${DEBUG_debug} ) && echo "DRYRUN mode = " $DRYRUN >> stack |
---|
| 1159 | fi |
---|
| 1160 | IGCM_debug_PopStack "IGCM_sys_Put_Rest" |
---|
[222] | 1161 | } |
---|
| 1162 | |
---|
| 1163 | #D-#================================================== |
---|
[544] | 1164 | #D-function IGCM_sys_PutBuffer_Rest |
---|
| 1165 | #D-* Purpose: Put computied restarts on ${SCRATCHDIR}. |
---|
| 1166 | #D- File and target directory must exist. |
---|
| 1167 | #D-* Examples: |
---|
| 1168 | #D- |
---|
| 1169 | function IGCM_sys_PutBuffer_Rest { |
---|
| 1170 | IGCM_debug_PushStack "IGCM_sys_PutBuffer_Rest" $@ |
---|
| 1171 | if ( $DEBUG_sys ) ; then |
---|
| 1172 | echo "IGCM_sys_PutBuffer_Rest :" $@ |
---|
| 1173 | fi |
---|
| 1174 | if [ $DRYRUN = 0 ]; then |
---|
| 1175 | if [ ! -f ${1} ] ; then |
---|
| 1176 | echo "ERROR : IGCM_sys_PutBuffer_Rest ${1} DOES NOT EXIST ." |
---|
| 1177 | IGCM_debug_Exit "IGCM_sys_PutBuffer_Rest" |
---|
| 1178 | fi |
---|
| 1179 | |
---|
| 1180 | typeset RET |
---|
| 1181 | # |
---|
| 1182 | if [ X${JobType} = XRUN ] ; then |
---|
| 1183 | IGCM_sys_Chmod 444 ${1} |
---|
| 1184 | fi |
---|
| 1185 | |
---|
| 1186 | # |
---|
| 1187 | # USUAL WAY |
---|
| 1188 | \cp $1 $2 > out_rsync 2>&1 |
---|
| 1189 | RET=$? |
---|
| 1190 | |
---|
| 1191 | if [ ${RET} -gt 0 ] ; then |
---|
| 1192 | echo "IGCM_sys_PutBuffer_Rest : error." |
---|
| 1193 | cat out_rsync |
---|
| 1194 | IGCM_debug_Exit "IGCM_sys_PutBuffer_Rest" |
---|
| 1195 | else |
---|
| 1196 | \rm out_rsync |
---|
| 1197 | fi |
---|
| 1198 | else |
---|
| 1199 | ( ${DEBUG_debug} ) && echo "DRYRUN mode = " $DRYRUN >> stack |
---|
| 1200 | fi |
---|
| 1201 | IGCM_debug_PopStack "IGCM_sys_PutBuffer_Rest" |
---|
| 1202 | } |
---|
| 1203 | |
---|
| 1204 | #D-#================================================== |
---|
[222] | 1205 | #D-function IGCM_sys_Put_Out |
---|
[544] | 1206 | #D-* Purpose: Copy a file on ${ARCHIVE} after having chmod it in readonly |
---|
[222] | 1207 | #D-* Examples: |
---|
| 1208 | #D- |
---|
| 1209 | function IGCM_sys_Put_Out { |
---|
[544] | 1210 | IGCM_debug_PushStack "IGCM_sys_Put_Out" $@ |
---|
| 1211 | if ( $DEBUG_sys ) ; then |
---|
| 1212 | echo "IGCM_sys_Put_Out :" $@ |
---|
| 1213 | fi |
---|
[676] | 1214 | |
---|
| 1215 | typeset NB_ESSAI DELAI RET i |
---|
| 1216 | |
---|
| 1217 | # number of tentative |
---|
| 1218 | NB_ESSAI=3 |
---|
| 1219 | # time delay between tentative |
---|
| 1220 | DELAI=2 |
---|
| 1221 | |
---|
[544] | 1222 | if [ $DRYRUN = 0 ]; then |
---|
| 1223 | if [ ! -f ${1} ] ; then |
---|
| 1224 | echo "WARNING : IGCM_sys_Put_Out ${1} DOES NOT EXIST ." |
---|
| 1225 | IGCM_debug_PopStack "IGCM_sys_Put_Out" |
---|
| 1226 | return 1 |
---|
[222] | 1227 | fi |
---|
[544] | 1228 | # |
---|
| 1229 | IGCM_sys_MkdirArchive $( dirname $2 ) |
---|
| 1230 | # |
---|
[222] | 1231 | |
---|
[544] | 1232 | #===================================================== |
---|
| 1233 | # COMMENT OUT DOUBLE COPY ON SCRATCHDIR |
---|
| 1234 | #===================================================== |
---|
[222] | 1235 | |
---|
[544] | 1236 | #echo ${2} | grep "${R_OUT}" > /dev/null 2>&1 |
---|
| 1237 | #if [ $? -eq 0 ] ; then |
---|
| 1238 | # typeset WORKPATH FILEPATH |
---|
| 1239 | # WORKPATH=$( dirname $2 | sed -e "s|${R_OUT}|${R_BUF}|" ) |
---|
[623] | 1240 | # IGCM_sys_MkdirWork ${WORKPATH} |
---|
[544] | 1241 | # FILEPATH=${WORKPATH}/$( basename $2 ) |
---|
| 1242 | # # |
---|
| 1243 | # IGCM_sys_Cp ${1} ${FILEPATH} |
---|
| 1244 | #fi |
---|
[222] | 1245 | |
---|
[544] | 1246 | if [ X${JobType} = XRUN ] ; then |
---|
| 1247 | if [ X${3} = X ] ; then |
---|
[623] | 1248 | IGCM_sys_Chmod 444 ${1} |
---|
[544] | 1249 | fi |
---|
| 1250 | fi |
---|
| 1251 | # |
---|
[676] | 1252 | |
---|
| 1253 | (( i = 0 )) |
---|
| 1254 | while [ $i -lt $NB_ESSAI ] ; do |
---|
[544] | 1255 | # USUAL WAY |
---|
[676] | 1256 | \cp $1 $2 > out_rsync 2>&1 |
---|
| 1257 | RET=$? |
---|
| 1258 | if [ ${RET} -gt 0 ]; then |
---|
| 1259 | IGCM_debug_Print 2 "IGCM_sys_Put_Out : cp failed ${i}/${NB_ESSAI}" |
---|
| 1260 | IGCM_debug_Print 2 "IGCM_sys_Put_Out : sleep ${DELAI} seconds and try again." |
---|
| 1261 | sleep $DELAI |
---|
| 1262 | else |
---|
| 1263 | break |
---|
| 1264 | fi |
---|
| 1265 | (( i = i + 1 )) |
---|
| 1266 | done |
---|
[222] | 1267 | |
---|
[623] | 1268 | # #RSYNC WITH NETWORK SSH CALL |
---|
| 1269 | # echo ${RSYNC} ${RSYNC_opt} -e ssh ${RUN_DIR}/$1 ${STOREHOST}:${2} > out_rsync 2>&1 |
---|
| 1270 | # ${RSYNC} ${RSYNC_opt} -e ssh ${RUN_DIR}/$1 ${STOREHOST}:${2} >> out_rsync 2>&1 |
---|
[222] | 1271 | |
---|
[623] | 1272 | # #RSYNC WITH NFS USE |
---|
| 1273 | # echo ${RSYNC} ${RSYNC_opt} ${RUN_DIR}/$1 ${2} > out_rsync 2>&1 |
---|
| 1274 | # ${RSYNC} ${RSYNC_opt} ${RUN_DIR}/$1 ${2} >> out_rsync 2>&1 |
---|
[222] | 1275 | |
---|
[623] | 1276 | # RET=$? |
---|
| 1277 | # IGCM_sys_Rsync_out $RET |
---|
[222] | 1278 | |
---|
[623] | 1279 | # ${libIGCM}/libIGCM_sys/IGCM_analyse_rsync_out.awk out_rsync |
---|
| 1280 | # (( RET=RET+$? )) |
---|
[222] | 1281 | |
---|
[544] | 1282 | if [ ${RET} -gt 0 ] ; then |
---|
| 1283 | echo "IGCM_sys_Put_Out : error." |
---|
| 1284 | cat out_rsync |
---|
| 1285 | IGCM_debug_Exit "IGCM_sys_Put_Out" |
---|
[222] | 1286 | else |
---|
[544] | 1287 | \rm out_rsync |
---|
[222] | 1288 | fi |
---|
[544] | 1289 | else |
---|
| 1290 | ( ${DEBUG_debug} ) && echo "DRYRUN mode = " $DRYRUN >> stack |
---|
| 1291 | fi |
---|
| 1292 | IGCM_debug_PopStack "IGCM_sys_Put_Out" |
---|
| 1293 | return 0 |
---|
[222] | 1294 | } |
---|
| 1295 | |
---|
| 1296 | #D-#================================================== |
---|
[544] | 1297 | #D-function IGCM_sys_PutBuffer_Out |
---|
| 1298 | #D-* Purpose: Copy a file on ${SCRATCHDIR} after having chmod it in readonly |
---|
| 1299 | #D-* Examples: |
---|
| 1300 | #D- |
---|
| 1301 | function IGCM_sys_PutBuffer_Out { |
---|
| 1302 | IGCM_debug_PushStack "IGCM_sys_PutBuffer_Out" $@ |
---|
| 1303 | if ( $DEBUG_sys ) ; then |
---|
| 1304 | echo "IGCM_sys_PutBuffer_Out :" $@ |
---|
| 1305 | fi |
---|
| 1306 | if [ $DRYRUN = 0 ]; then |
---|
| 1307 | if [ ! -f ${1} ] ; then |
---|
| 1308 | echo "WARNING : IGCM_sys_PutBuffer_Out ${1} DOES NOT EXIST ." |
---|
| 1309 | IGCM_debug_PopStack "IGCM_sys_PutBuffer_Out" |
---|
| 1310 | return 1 |
---|
| 1311 | fi |
---|
| 1312 | # |
---|
| 1313 | IGCM_sys_Mkdir $( dirname $2 ) |
---|
| 1314 | # |
---|
| 1315 | typeset RET |
---|
| 1316 | |
---|
| 1317 | if [ X${JobType} = XRUN ] ; then |
---|
| 1318 | if [ X${3} = X ] ; then |
---|
[623] | 1319 | IGCM_sys_Chmod 444 ${1} |
---|
[544] | 1320 | fi |
---|
| 1321 | fi |
---|
| 1322 | # |
---|
| 1323 | # USUAL WAY |
---|
| 1324 | \cp $1 $2 > out_rsync 2>&1 |
---|
| 1325 | RET=$? |
---|
| 1326 | |
---|
| 1327 | if [ ${RET} -gt 0 ] ; then |
---|
| 1328 | echo "IGCM_sys_PutBuffer_Out : error." |
---|
| 1329 | cat out_rsync |
---|
| 1330 | IGCM_debug_Exit "IGCM_sys_PutBuffer_Out" |
---|
| 1331 | else |
---|
| 1332 | \rm out_rsync |
---|
| 1333 | fi |
---|
| 1334 | else |
---|
| 1335 | ( ${DEBUG_debug} ) && echo "DRYRUN mode = " $DRYRUN >> stack |
---|
| 1336 | fi |
---|
| 1337 | IGCM_debug_PopStack "IGCM_sys_PutBuffer_Out" |
---|
| 1338 | return 0 |
---|
| 1339 | } |
---|
| 1340 | |
---|
| 1341 | #D-#================================================== |
---|
[222] | 1342 | #D-function IGCM_sys_Get |
---|
| 1343 | #D-* Purpose: Get a file from ${ARCHIVE} |
---|
| 1344 | #D-* Examples: IGCM_sys_Get myfile /destpath/myfile_with_PREFIX |
---|
| 1345 | #D- IGCM_sys_Get /l Array_contain_myfiles /destpath/ |
---|
| 1346 | function IGCM_sys_Get { |
---|
[544] | 1347 | IGCM_debug_PushStack "IGCM_sys_Get" $@ |
---|
[222] | 1348 | |
---|
[623] | 1349 | typeset DEST RET dm_liste ifile target file_work |
---|
[676] | 1350 | typeset NB_ESSAI DELAI status i |
---|
[222] | 1351 | |
---|
[544] | 1352 | if ( $DEBUG_sys ) ; then |
---|
| 1353 | echo "IGCM_sys_Get :" $@ |
---|
| 1354 | fi |
---|
[676] | 1355 | |
---|
| 1356 | # number of tentative |
---|
| 1357 | NB_ESSAI=3 |
---|
| 1358 | # time delay between tentative |
---|
| 1359 | DELAI=2 |
---|
| 1360 | |
---|
[544] | 1361 | if [ $DRYRUN -le 2 ]; then |
---|
| 1362 | if [ X${1} = X'/l' ] ; then |
---|
| 1363 | # test if the first file is present in the old computation : |
---|
| 1364 | eval set +A dm_liste \${${2}} |
---|
| 1365 | else |
---|
| 1366 | eval set +A dm_liste ${1} |
---|
[222] | 1367 | fi |
---|
[544] | 1368 | eval DEST=\${${#}} |
---|
[222] | 1369 | |
---|
[544] | 1370 | #===================================================== |
---|
| 1371 | # COMMENT OUT DOUBLE COPY ON SCRATCHDIR |
---|
| 1372 | #===================================================== |
---|
[222] | 1373 | |
---|
[544] | 1374 | # Is it an R_OUT file (not R_IN) ? |
---|
| 1375 | #echo ${dm_liste[0]} | grep "${R_OUT}" > /dev/null 2>&1 |
---|
| 1376 | #if [ $? -eq 0 ] ; then |
---|
| 1377 | # # Yes ? then we try to get it in SCRATCHDIR |
---|
| 1378 | # set +A file_work $( echo ${dm_liste[*]} | sed -e "s|${R_OUT}|${R_BUF}|g" ) |
---|
| 1379 | # if [ -f ${file_work[0]} ] ; then |
---|
| 1380 | # IGCM_sys_Cp ${file_work[*]} ${DEST} |
---|
| 1381 | # IGCM_debug_PopStack "IGCM_sys_Get" |
---|
| 1382 | # return |
---|
| 1383 | # fi |
---|
| 1384 | #fi |
---|
[222] | 1385 | |
---|
[587] | 1386 | ccc_hsm get ${dm_liste[*]} > out_rsync 2>&1 |
---|
[544] | 1387 | RET=$? |
---|
| 1388 | if [ ${RET} -gt 0 ] ; then |
---|
| 1389 | echo "WARNING IGCM_sys_Get : demigration error." |
---|
| 1390 | cat out_rsync |
---|
| 1391 | echo "WARNING IGCM_sys_Get : will stop later if the cp fails." |
---|
| 1392 | fi |
---|
[222] | 1393 | |
---|
[544] | 1394 | #if [ ${RET} -gt 0 ] ; then |
---|
| 1395 | # if [ ! "X$( grep "Lost dmusrcmd connection" out_rsync )" = "X" ] ; then |
---|
| 1396 | # cat out_rsync |
---|
| 1397 | # echo "WARNING IGCM_sys_Get : Lost dmusrcmd connection : " |
---|
| 1398 | # sleep 30 |
---|
| 1399 | # echo "We try another time" |
---|
[587] | 1400 | ## dmget ${dm_liste[*]} > out_rsync 2>&1 |
---|
| 1401 | # ccc_hsm get ${dm_liste[*]} > out_rsync 2>&1 |
---|
[544] | 1402 | # RET=$? |
---|
| 1403 | # if [ ${RET} -gt 0 ] ; then |
---|
[623] | 1404 | # echo "ERROR IGCM_sys_Get : again demigration error :" |
---|
| 1405 | # cat out_rsync |
---|
| 1406 | # IGCM_debug_Exit "IGCM_sys_Get" |
---|
[544] | 1407 | # fi |
---|
| 1408 | # else |
---|
| 1409 | # echo "ERROR IGCM_sys_Get : demigration error :" |
---|
| 1410 | # cat out_rsync |
---|
| 1411 | # IGCM_debug_Exit "IGCM_sys_Get" |
---|
| 1412 | # fi |
---|
| 1413 | #fi |
---|
[520] | 1414 | |
---|
[544] | 1415 | #USUAL WAY |
---|
| 1416 | if [ X${1} = X'/l' ] ; then |
---|
| 1417 | (( RET=0 )) |
---|
| 1418 | for target in ${dm_liste[*]} ; do |
---|
[623] | 1419 | local_file=$( basename ${target} ) |
---|
[676] | 1420 | (( i = 0 )) |
---|
| 1421 | # test if the target file is present before the loop |
---|
| 1422 | IGCM_sys_TestFileArchive ${target} |
---|
| 1423 | RET=$? |
---|
| 1424 | if [ ${RET} -gt 0 ] ; then |
---|
[705] | 1425 | echo "IGCM_sys_Get, ERROR : regular file ${target} DOES NOT EXIST ." |
---|
[676] | 1426 | IGCM_debug_Exit "IGCM_sys_Get" |
---|
| 1427 | else |
---|
| 1428 | while [ $i -lt $NB_ESSAI ] ; do |
---|
| 1429 | \cp ${target} ${DEST}/${local_file} >> out_rsync 2>&1 |
---|
| 1430 | status=$? |
---|
| 1431 | if [ ${status} -gt 0 ]; then |
---|
| 1432 | IGCM_debug_Print 2 "IGCM_sys_Get : cp failed ${i}/${NB_ESSAI}" |
---|
| 1433 | IGCM_debug_Print 2 "IGCM_sys_Get : sleep ${DELAI} seconds and try again." |
---|
| 1434 | sleep $DELAI |
---|
| 1435 | else |
---|
| 1436 | break |
---|
| 1437 | fi |
---|
| 1438 | (( i = i + 1 )) |
---|
| 1439 | done |
---|
| 1440 | (( RET = RET + status )) |
---|
| 1441 | fi |
---|
[544] | 1442 | done |
---|
| 1443 | else |
---|
| 1444 | \cp ${dm_liste} ${DEST} >> out_rsync 2>&1 |
---|
| 1445 | RET=$? |
---|
| 1446 | fi |
---|
[520] | 1447 | |
---|
[623] | 1448 | # #RSYNC WITH NETWORK SSH CALL |
---|
| 1449 | # echo ${RSYNC} ${RSYNC_opt} -e ssh ${STOREHOST}:"${dm_liste}" ${STOREHOST}:${RUN_DIR}/${DEST} > out_rsync 2>&1 |
---|
| 1450 | # ${RSYNC} ${RSYNC_opt} -e ssh ${STOREHOST}:"${dm_liste}" ${STOREHOST}:${RUN_DIR}/${DEST} >> out_rsync 2>&1 |
---|
[222] | 1451 | |
---|
[623] | 1452 | # #RSYNC WITH NFS USE |
---|
| 1453 | # echo ${RSYNC} ${RSYNC_opt} ${dm_liste} ${RUN_DIR}/${DEST} > out_rsync 2>&1 |
---|
| 1454 | # ${RSYNC} ${RSYNC_opt} ${dm_liste} ${RUN_DIR}/${DEST} >> out_rsync 2>&1 |
---|
[222] | 1455 | |
---|
[623] | 1456 | # RET=$? |
---|
| 1457 | # IGCM_sys_Rsync_out $RET |
---|
[222] | 1458 | |
---|
[623] | 1459 | # ${libIGCM}/libIGCM_sys/IGCM_analyse_rsync_out.awk out_rsync |
---|
| 1460 | # (( RET=RET+$? )) |
---|
[222] | 1461 | |
---|
[544] | 1462 | if [ ${RET} -gt 0 ] ; then |
---|
| 1463 | echo "IGCM_sys_Get : copy error." |
---|
| 1464 | cat out_rsync |
---|
| 1465 | IGCM_debug_Exit "IGCM_sys_Get" |
---|
[222] | 1466 | else |
---|
[544] | 1467 | \rm out_rsync |
---|
[222] | 1468 | fi |
---|
[544] | 1469 | else |
---|
| 1470 | ( ${DEBUG_debug} ) && echo "DRYRUN mode = " $DRYRUN >> stack |
---|
| 1471 | fi |
---|
| 1472 | IGCM_debug_PopStack "IGCM_sys_Get" |
---|
[222] | 1473 | } |
---|
| 1474 | |
---|
| 1475 | #D-#================================================== |
---|
[544] | 1476 | #D-function IGCM_sys_GetBuffer |
---|
| 1477 | #D-* Purpose: Get a file from ${SCRATCHDIR} |
---|
| 1478 | #D-* Examples: IGCM_sys_GetBuffer myfile /destpath/myfile_with_PREFIX |
---|
| 1479 | #D- IGCM_sys_GetBuffer /l Array_contain_myfiles /destpath/ |
---|
| 1480 | function IGCM_sys_GetBuffer { |
---|
| 1481 | IGCM_debug_PushStack "IGCM_sys_GetBuffer" $@ |
---|
| 1482 | |
---|
[623] | 1483 | typeset DEST RET buf_liste ifile target file_work |
---|
[544] | 1484 | |
---|
| 1485 | if ( $DEBUG_sys ) ; then |
---|
| 1486 | echo "IGCM_sys_GetBuffer :" $@ |
---|
| 1487 | fi |
---|
| 1488 | if [ $DRYRUN -le 2 ]; then |
---|
| 1489 | if [ X${1} = X'/l' ] ; then |
---|
| 1490 | # test if the first file is present in the old computation : |
---|
| 1491 | eval set +A buf_liste \${${2}} |
---|
| 1492 | else |
---|
| 1493 | eval set +A buf_liste ${1} |
---|
| 1494 | fi |
---|
| 1495 | eval DEST=\${${#}} |
---|
| 1496 | |
---|
| 1497 | #USUAL WAY |
---|
| 1498 | if [ X${1} = X'/l' ] ; then |
---|
| 1499 | (( RET=0 )) |
---|
| 1500 | for target in ${buf_liste[*]} ; do |
---|
[623] | 1501 | local_file=$( basename ${target} ) |
---|
| 1502 | \cp ${target} ${DEST}/${local_file} >> out_rsync 2>&1 |
---|
| 1503 | (( RET = RET + $? )) |
---|
[544] | 1504 | done |
---|
| 1505 | else |
---|
| 1506 | \cp ${buf_liste} ${DEST} >> out_rsync 2>&1 |
---|
| 1507 | RET=$? |
---|
| 1508 | fi |
---|
| 1509 | |
---|
| 1510 | if [ ${RET} -gt 0 ] ; then |
---|
| 1511 | echo "IGCM_sys_GetBuffer : copy error." |
---|
| 1512 | cat out_rsync |
---|
| 1513 | IGCM_debug_Exit "IGCM_sys_GetBuffer" |
---|
| 1514 | else |
---|
| 1515 | \rm out_rsync |
---|
| 1516 | fi |
---|
| 1517 | else |
---|
| 1518 | ( ${DEBUG_debug} ) && echo "DRYRUN mode = " $DRYRUN >> stack |
---|
| 1519 | fi |
---|
| 1520 | IGCM_debug_PopStack "IGCM_sys_GetBuffer" |
---|
| 1521 | } |
---|
| 1522 | |
---|
| 1523 | #D-#================================================== |
---|
[222] | 1524 | #D-function IGCM_sys_GetDate_FichWork |
---|
| 1525 | #D-* Purpose: donne la date filesys d'un fichier sur le filesystem WORK |
---|
| 1526 | #D-* Examples: |
---|
| 1527 | #D- |
---|
| 1528 | function IGCM_sys_GetDate_FichWork { |
---|
[544] | 1529 | IGCM_debug_PushStack "IGCM_sys_FichWork" $@ |
---|
| 1530 | if ( $DEBUG_sys ) ; then |
---|
| 1531 | echo "IGCM_sys_GetDate_FichWork :" $@ |
---|
| 1532 | fi |
---|
| 1533 | typeset dateF |
---|
| 1534 | set +A dateF -- $( ls -l --full-time --time-style='+%Y%m%d%H%M%S' ${1} ) |
---|
| 1535 | eval ${2}=${dateF[5]} |
---|
[538] | 1536 | |
---|
[222] | 1537 | # donne la date filesys d'un fichier sur la machine work |
---|
[544] | 1538 | IGCM_debug_PopStack "IGCM_sys_FichWork" |
---|
[222] | 1539 | } |
---|
| 1540 | |
---|
| 1541 | #D-#================================================== |
---|
| 1542 | #D-function IGCM_sys_GetDate_FichArchive |
---|
[623] | 1543 | #D-* Purpose: donne la date filesys d'un fichier sur le filesystem ARCHIVE |
---|
[222] | 1544 | #D-* Examples: |
---|
| 1545 | #D- |
---|
| 1546 | function IGCM_sys_GetDate_FichArchive { |
---|
[544] | 1547 | IGCM_debug_PushStack "IGCM_sys_FichArchive" $@ |
---|
| 1548 | if ( $DEBUG_sys ) ; then |
---|
| 1549 | echo "IGCM_sys_GetDate_FichArchive :" $@ |
---|
| 1550 | fi |
---|
| 1551 | typeset dateF |
---|
| 1552 | set +A dateF -- $( ls -l --full-time --time-style='+%Y%m%d%H%M%S' ${1} ) |
---|
| 1553 | eval ${2}=${dateF[5]} |
---|
| 1554 | |
---|
| 1555 | IGCM_debug_PopStack "IGCM_sys_FichArchive" |
---|
| 1556 | } |
---|
| 1557 | |
---|
| 1558 | #D-#================================================== |
---|
| 1559 | #D-function IGCM_sys_Dods_Rm |
---|
| 1560 | #D-* Purpose: DO NOTHING ! Put ${ARCHIVE} files on DODS internet protocole. |
---|
| 1561 | #D-* Examples: |
---|
| 1562 | #D- |
---|
| 1563 | function IGCM_sys_Dods_Rm { |
---|
| 1564 | if ( $DEBUG_sys ) ; then |
---|
| 1565 | echo "IGCM_sys_Dods_Rm :" $@ |
---|
| 1566 | fi |
---|
| 1567 | typeset RET |
---|
| 1568 | RET=0 |
---|
| 1569 | if [ $DRYRUN = 0 ]; then |
---|
[591] | 1570 | |
---|
| 1571 | # if [ ! -d /dmnfs/cont003/dods/public/${LOGIN}/${R_DODS}/${1} ] ; then |
---|
| 1572 | # echo "WARNING : IGCM_sys_Dods_Rm /dmnfs/cont003/dods/public/${LOGIN}/${R_DODS}/${1} DOES NOT EXIST ." |
---|
| 1573 | # echo "Nothing has been done." |
---|
| 1574 | # return |
---|
| 1575 | # fi |
---|
| 1576 | |
---|
[649] | 1577 | /ccc/cont003/home/dsm/p86ipsl/bin/dods_rm public/${LOGIN}/${R_DODS}/${1} # > out_dods_rm 2>&1 |
---|
[544] | 1578 | RET=$? |
---|
[623] | 1579 | |
---|
[544] | 1580 | # if [ ${RET} -gt 0 ] ; then |
---|
[623] | 1581 | # echo "IGCM_sys_Dods_Rm : error." |
---|
| 1582 | # cat out_dods_rm |
---|
| 1583 | # IGCM_debug_Exit "IGCM_sys_Dods_Rm" |
---|
[544] | 1584 | # else |
---|
[623] | 1585 | # rm out_dods_rm |
---|
[544] | 1586 | # fi |
---|
[538] | 1587 | |
---|
[544] | 1588 | else |
---|
| 1589 | ( ${DEBUG_debug} ) && echo "DRYRUN mode = " $DRYRUN >> stack |
---|
| 1590 | fi |
---|
| 1591 | return $RET |
---|
[222] | 1592 | } |
---|
| 1593 | |
---|
[544] | 1594 | #D-#================================================== |
---|
| 1595 | #D-function IGCM_sys_Dods_Cp |
---|
| 1596 | #D-* Purpose: Copy $(ARCHIVE) files on DODS internet protocole. |
---|
| 1597 | #D-* Examples: |
---|
| 1598 | #D- |
---|
| 1599 | function IGCM_sys_Dods_Cp { |
---|
| 1600 | if ( $DEBUG_sys ) ; then |
---|
| 1601 | echo "IGCM_sys_Dods_Cp :" $@ |
---|
| 1602 | fi |
---|
| 1603 | typeset RET |
---|
| 1604 | RET=0 |
---|
| 1605 | if [ $DRYRUN = 0 ]; then |
---|
[591] | 1606 | |
---|
| 1607 | # if [ ! -d ${R_SAVE}/${1} ] ; then |
---|
| 1608 | # echo "WARNING : IGCM_sys_Dods_Cp ${R_SAVE}/${1} DOES NOT EXIST ." |
---|
| 1609 | # echo "Nothing has been done." |
---|
| 1610 | # return |
---|
| 1611 | # fi |
---|
| 1612 | |
---|
[649] | 1613 | /ccc/cont003/home/dsm/p86ipsl/bin/dods_cp ${1} public/${LOGIN}/${R_DODS} # > out_dods_cp 2>&1 |
---|
[544] | 1614 | RET=$? |
---|
| 1615 | |
---|
[623] | 1616 | # if [ ${RET} -gt 0 ] ; then |
---|
| 1617 | # echo "IGCM_sys_Dods_Cp : error." |
---|
| 1618 | # cat out_dods_cp |
---|
| 1619 | # IGCM_debug_Exit "IGCM_sys_Dods_Cp" |
---|
| 1620 | # else |
---|
| 1621 | # rm out_dods_cp |
---|
| 1622 | # fi |
---|
[544] | 1623 | |
---|
| 1624 | else |
---|
| 1625 | ( ${DEBUG_debug} ) && echo "DRYRUN mode = " $DRYRUN >> stack |
---|
| 1626 | fi |
---|
| 1627 | return $RET |
---|
| 1628 | } |
---|
| 1629 | |
---|
| 1630 | #D-#================================================== |
---|
| 1631 | #D-function IGCM_sys_Put_Dods |
---|
| 1632 | #D-* Purpose: Put $(ARCHIVE) files on DODS internet protocole. |
---|
| 1633 | #D-* Examples: |
---|
| 1634 | #D- |
---|
| 1635 | function IGCM_sys_Put_Dods { |
---|
| 1636 | IGCM_debug_PushStack "IGCM_sys_Put_Dods" $@ |
---|
| 1637 | if ( $DEBUG_sys ) ; then |
---|
| 1638 | echo "IGCM_sys_Put_Dods :" $@ |
---|
| 1639 | fi |
---|
[591] | 1640 | set -vx |
---|
[587] | 1641 | typeset RET |
---|
[544] | 1642 | if [ $DRYRUN = 0 ]; then |
---|
[587] | 1643 | if ( [ ! -d ${R_SAVE}/${1} ] && [ ! -d ${R_FIGR}/${1} ] ) ; then |
---|
| 1644 | echo "WARNING IGCM_sys_Put_Dods : None of the following directories exist. Exactly one should." |
---|
| 1645 | echo "WARNING IGCM_sys_Put_Dods : ${R_SAVE}/${1} DOES NOT EXIST." |
---|
| 1646 | echo "WARNING IGCM_sys_Put_Dods : ${R_FIGR}/${1} DOES NOT EXIST." |
---|
[544] | 1647 | IGCM_debug_PopStack "IGCM_sys_Put_Dods" |
---|
| 1648 | return |
---|
| 1649 | fi |
---|
| 1650 | |
---|
[587] | 1651 | if ( [ -d ${R_SAVE}/${1} ] && [ -d ${R_FIGR}/${1} ] ) ; then |
---|
| 1652 | echo "WARNING IGCM_sys_Put_Dods : Both of the following directories exist. Exactly one should." |
---|
| 1653 | echo "WARNING IGCM_sys_Put_Dods : ${R_SAVE}/${1} EXISTS." |
---|
| 1654 | echo "WARNING IGCM_sys_Put_Dods : ${R_FIGR}/${1} EXISTS." |
---|
| 1655 | IGCM_debug_PopStack "IGCM_sys_Put_Dods" |
---|
| 1656 | return |
---|
| 1657 | fi |
---|
| 1658 | # |
---|
| 1659 | if [ -d ${R_SAVE}/${1} ] ; then |
---|
| 1660 | cd ${R_SAVE} |
---|
| 1661 | elif [ -d ${R_FIGR}/${1} ] ; then |
---|
| 1662 | cd ${R_FIGR} |
---|
| 1663 | fi |
---|
| 1664 | |
---|
[544] | 1665 | IGCM_sys_Dods_Rm ${1} |
---|
| 1666 | IGCM_sys_Dods_Cp ${1} |
---|
| 1667 | RET=0 |
---|
[623] | 1668 | |
---|
[544] | 1669 | if [ ${RET} -gt 0 ] ; then |
---|
| 1670 | echo "IGCM_sys_Put_Dods : error." |
---|
| 1671 | IGCM_debug_Exit "IGCM_sys_Put_Dods" |
---|
| 1672 | fi |
---|
| 1673 | else |
---|
| 1674 | ( ${DEBUG_debug} ) && echo "DRYRUN mode = " $DRYRUN >> stack |
---|
| 1675 | fi |
---|
| 1676 | IGCM_debug_PopStack "IGCM_sys_Put_Dods" |
---|
| 1677 | } |
---|
| 1678 | |
---|
[222] | 1679 | ############################################################## |
---|
| 1680 | # REBUILD OPERATOR |
---|
| 1681 | |
---|
| 1682 | function IGCM_sys_rebuild { |
---|
[544] | 1683 | IGCM_debug_PushStack "IGCM_sys_rebuild" -- $@ |
---|
| 1684 | if ( $DEBUG_sys ) ; then |
---|
| 1685 | echo "IGCM_sys_rebuild :" $@ |
---|
| 1686 | fi |
---|
| 1687 | /home/cont003/p86ipsl/X64/bin/rebuild -f -o $@ |
---|
| 1688 | if [ $? -gt 0 ] ; then |
---|
| 1689 | echo "IGCM_sys_rebuild : erreur ${@}." |
---|
| 1690 | IGCM_debug_Exit "rebuild" |
---|
| 1691 | fi |
---|
[222] | 1692 | |
---|
[544] | 1693 | IGCM_debug_PopStack "IGCM_sys_rebuild" |
---|
[222] | 1694 | } |
---|
| 1695 | |
---|
[697] | 1696 | function IGCM_sys_rebuild_station { |
---|
| 1697 | IGCM_debug_PushStack "IGCM_sys_rebuild_station" -- $@ |
---|
| 1698 | typeset i list_opt file_in file_out prefix_invert list_invert |
---|
| 1699 | if ( $DEBUG_sys ) ; then |
---|
| 1700 | echo "IGCM_sys_rebuild_station :" $@ |
---|
| 1701 | fi |
---|
| 1702 | list_opt=$@ |
---|
| 1703 | |
---|
| 1704 | # Invert Axis : t,x -> x,t |
---|
| 1705 | # t,pres,x -> x,t,pres |
---|
| 1706 | # So that we can concatenate along x |
---|
| 1707 | i=0 |
---|
| 1708 | for file_in in ${list_opt} ; do |
---|
| 1709 | (( i = i + 1)) |
---|
| 1710 | [ ${i} = 1 ] && file_out=${file_in} && continue |
---|
| 1711 | prefix_invert=$( basename ${file_in} .nc ) |
---|
| 1712 | IGCM_sys_ncpdq -a x,time_counter -a x,time_counter,presnivs ${file_in} ${prefix_invert}_xt.nc |
---|
| 1713 | list_invert[${#list_invert[*]}]=${prefix_invert}_xt.nc |
---|
| 1714 | done |
---|
| 1715 | |
---|
| 1716 | # Concatenate |
---|
| 1717 | IGCM_sys_ncrcat ${list_invert[*]} histstn_xt.nc |
---|
| 1718 | |
---|
| 1719 | # Re-ivert file |
---|
| 1720 | IGCM_sys_ncpdq -a time_counter,x -a time_counter,presnivs,x histstn_xt.nc ${file_out} |
---|
| 1721 | |
---|
| 1722 | # Station re-ordering is too expansive to be run within libICGM |
---|
| 1723 | # This is due to (ncpdq - nrcat - ncpdq) I/O sequence. |
---|
| 1724 | # This re-ordering must be done "in memory" by the cmorization process |
---|
| 1725 | # Anyway this is the best sequence using (ncpdq - nrcat - ncpdq) |
---|
| 1726 | # BEGIN reordering |
---|
| 1727 | |
---|
| 1728 | # Only LMDZ text output contains the exact ordering of the station. |
---|
| 1729 | # We isolate this in the code below: |
---|
| 1730 | # 0 38 -157.5000000000000 70.98591549295774 |
---|
| 1731 | # 0 54 27.49999999999999 67.18309859154928 |
---|
| 1732 | # 0 56 -62.50000000000001 82.39436619718309 |
---|
| 1733 | # 0 79 12.49999999999999 78.59154929577466 |
---|
| 1734 | # 0 116 -165.0000000000000 76.05633802816901 |
---|
| 1735 | # 0 117 130.0000000000000 70.98591549295774 |
---|
| 1736 | # 0 118 110.0000000000000 87.46478873239437 |
---|
| 1737 | # 1 40 4.999999999999995 51.97183098591550 |
---|
| 1738 | # typeset iStation iProc list_opt file_in file_out prefix_invert |
---|
| 1739 | # typeset -Z4 j4 |
---|
| 1740 | # typeset -Z3 j3 |
---|
| 1741 | |
---|
| 1742 | # unset list_opt |
---|
| 1743 | # set +A list_opt $@ |
---|
| 1744 | |
---|
| 1745 | # Filename after rebuild |
---|
| 1746 | # file_out=${list_opt[0]} |
---|
| 1747 | # Prefix of output files |
---|
| 1748 | # prefix_invert=$( basename ${file_out} .nc ) |
---|
| 1749 | # Number of procs |
---|
| 1750 | # num_proc=$( grep -i mpi_size ${PREFIX}_${Exe_Output} | wc -l ) |
---|
| 1751 | |
---|
| 1752 | # iProc=0 |
---|
| 1753 | # while [ ${iProc} -lt ${num_proc} ] ; do |
---|
| 1754 | # Array containing Station as a number |
---|
| 1755 | # unset proc_stn |
---|
| 1756 | # set +A proc_stn $( grep "iophy_mpi rank ip lon lat $iProc" ${PREFIX}_${Exe_Output} | sed -e "s/iophy_mpi rank ip lon lat //g" | awk ' {print $2}' ) |
---|
| 1757 | # Number of stations produced by processor proc |
---|
| 1758 | # stationLast=${#proc_stn[*]} |
---|
| 1759 | # Proc number on 4 digits |
---|
| 1760 | # j4=${iProc} |
---|
| 1761 | # Init |
---|
| 1762 | # iStation=0 |
---|
| 1763 | # while [ ${iStation} -lt ${stationLast} ] ; do |
---|
| 1764 | # Station number on 3 digits |
---|
| 1765 | # j3=${proc_stn[${iStation}]} |
---|
| 1766 | # Extract station |
---|
| 1767 | # Invert Axis : t,x -> x,t |
---|
| 1768 | # t,pres,x -> x,t,pres |
---|
| 1769 | # So that we can concatenate along x |
---|
| 1770 | # IGCM_sys_ncpdq -a x,time_counter -a x,time_counter,presnivs -d x,$iStation,$iStation ${prefix_invert}_${j4}.nc ${prefix_invert}_stn_${j3}.nc |
---|
| 1771 | # (( iStation = iStation + 1 )) |
---|
| 1772 | # done |
---|
| 1773 | # (( iProc = iProc + 1 )) |
---|
| 1774 | # done |
---|
| 1775 | |
---|
| 1776 | # Concatenate all station along x |
---|
| 1777 | # IGCM_sys_ncrcat ${prefix_invert}_stn_???.nc ${prefix_invert}_xt.nc |
---|
| 1778 | |
---|
| 1779 | # Re-invert file |
---|
| 1780 | # IGCM_sys_ncpdq -a time_counter,x -a time_counter,presnivs,x ${prefix_invert}_xt.nc ${file_out} |
---|
| 1781 | |
---|
| 1782 | # END reordering |
---|
| 1783 | |
---|
| 1784 | IGCM_debug_PopStack "IGCM_sys_rebuild_station" |
---|
| 1785 | } |
---|
| 1786 | |
---|
[222] | 1787 | ############################################################ |
---|
| 1788 | # Activate Running Environnment Variables |
---|
| 1789 | |
---|
| 1790 | function IGCM_sys_activ_variables { |
---|
[544] | 1791 | IGCM_debug_PushStack "IGCM_sys_activ_variables" |
---|
| 1792 | if ( $DEBUG_sys ) ; then |
---|
| 1793 | echo "IGCM_sys_activ_variables" |
---|
| 1794 | fi |
---|
[621] | 1795 | |
---|
| 1796 | ulimit -s unlimited |
---|
| 1797 | |
---|
[686] | 1798 | export KMP_STACKSIZE=3g |
---|
| 1799 | export KMP_LIBRARY=turnaround |
---|
| 1800 | export MKL_SERIAL=YES |
---|
| 1801 | unset MPI_PLACING_MODE |
---|
[623] | 1802 | |
---|
[687] | 1803 | # add module load nb of threads for core placement |
---|
| 1804 | (( max_omp = 0 )) |
---|
| 1805 | |
---|
| 1806 | for comp in ${config_ListOfComponents[*]} ; do |
---|
| 1807 | eval ExeNameIn=\${config_Executable_${comp}[0]} |
---|
| 1808 | eval ExeNameOut=\${config_Executable_${comp}[1]} |
---|
| 1809 | |
---|
| 1810 | # Only if we really have an executable for the component : |
---|
| 1811 | if ( [ "X${ExeNameOut}" != X\"\" ] && [ "X${comp}" != "XCPL" ] && [ "X${ExeNameOut}" != "Xinca.dat" ] ) ; then |
---|
| 1812 | eval comp_proc_omp_loc=\${${comp}_PROC_OMP} |
---|
| 1813 | if [ ${comp_proc_omp_loc} -gt ${max_omp} ] ; then |
---|
| 1814 | (( max_omp = comp_proc_omp_loc )) |
---|
| 1815 | fi |
---|
| 1816 | fi |
---|
| 1817 | done |
---|
| 1818 | |
---|
| 1819 | ( [ X${max_omp} = X4 ] || [ X${max_omp} = X8 ] ) && { module load openmp/${max_omp}thds ; IGCM_debug_Print 1 "module load openmp/${max_omp}thds" ; } |
---|
| 1820 | |
---|
[544] | 1821 | IGCM_debug_PopStack "IGCM_sys_activ_variables" |
---|
[222] | 1822 | } |
---|
| 1823 | |
---|
| 1824 | ############################################################ |
---|
| 1825 | # Desactivate Running Environnment Variables |
---|
| 1826 | |
---|
| 1827 | function IGCM_sys_desactiv_variables { |
---|
[544] | 1828 | IGCM_debug_PushStack "IGCM_sys_desactiv_variables" |
---|
| 1829 | if ( $DEBUG_sys ) ; then |
---|
| 1830 | echo "IGCM_sys_desactiv_variables" |
---|
| 1831 | fi |
---|
| 1832 | IGCM_debug_PopStack "IGCM_sys_desactiv_variables" |
---|
[222] | 1833 | } |
---|
| 1834 | |
---|
| 1835 | ############################################################ |
---|
[621] | 1836 | # Build MPI/OMP scripts run file (dummy function) |
---|
[222] | 1837 | |
---|
| 1838 | function IGCM_sys_build_run_file { |
---|
[621] | 1839 | |
---|
| 1840 | IGCM_debug_Print 3 " dummy function : IGCM_sys_build_run_file " |
---|
| 1841 | |
---|
| 1842 | } |
---|
| 1843 | |
---|
| 1844 | ############################################################ |
---|
| 1845 | # Build MPI/OMP scripts |
---|
[623] | 1846 | function IGCM_sys_build_execution_scripts |
---|
[621] | 1847 | { |
---|
| 1848 | IGCM_debug_PushStack "IGCM_sys_build_execution_scripts" $@ |
---|
[544] | 1849 | if ( $DEBUG_sys ) ; then |
---|
[621] | 1850 | echo "IGCM_sys_build_execution_scripts " $@ |
---|
[544] | 1851 | fi |
---|
[623] | 1852 | typeset nodes listnodes init_node start_num init_exec comp ExeNameIn ExeNameOut |
---|
| 1853 | typeset node_num_current node_current comp_proc_mpi_loc comp_proc_omp_loc |
---|
[621] | 1854 | typeset num_corempi nombre_restant_node nombre_restant_comp |
---|
[687] | 1855 | typeset IGCM_OMP |
---|
[395] | 1856 | |
---|
[621] | 1857 | if [ ! -f ${SUBMIT_DIR}/Job_${config_UserChoices_JobName} ] ; then |
---|
| 1858 | IGCM_debug_Exit "IGCM_sys_titane build_execution_scripts : Job_${config_UserChoices_JobName} doesn't exist in SUBMIT_DIR : ${SUBMIT_DIR} " |
---|
| 1859 | fi |
---|
[395] | 1860 | |
---|
[621] | 1861 | if ( ${OK_PARA_MPMD} ) ; then |
---|
| 1862 | |
---|
| 1863 | if [ -f run_file ] ; then |
---|
| 1864 | IGCM_sys_Rm -f run_file |
---|
| 1865 | fi |
---|
| 1866 | touch run_file |
---|
| 1867 | |
---|
| 1868 | if ( ${OK_PARA_OMP} ) ; then |
---|
| 1869 | |
---|
| 1870 | # Hosts treatment |
---|
| 1871 | |
---|
| 1872 | ${HOST_MPIRUN_COMMAND} hostname | sort | uniq > hosts.tmp |
---|
[623] | 1873 | |
---|
[621] | 1874 | i=0 |
---|
| 1875 | rm -f hosts |
---|
| 1876 | IGCM_debug_Print 1 "sys Titane, Hosts avaible :" |
---|
| 1877 | for nodes in `cat hosts.tmp` ; do |
---|
| 1878 | host[$i]=$nodes |
---|
| 1879 | echo "${host[$i]} slots=8 max_slots=8" >> hosts |
---|
| 1880 | IGCM_debug_Print 1 ${host[$i]} |
---|
| 1881 | i=$((i+1)) |
---|
| 1882 | done |
---|
| 1883 | rm -f hosts.tmp |
---|
[623] | 1884 | |
---|
[621] | 1885 | listnodes=${host[*]} |
---|
[623] | 1886 | |
---|
| 1887 | EXECUTION="${HOST_MPIRUN_COMMAND} -hostfile hosts" |
---|
| 1888 | |
---|
[621] | 1889 | # Initialisation |
---|
| 1890 | |
---|
| 1891 | init_node=y |
---|
| 1892 | node_num_current=0 |
---|
| 1893 | start_num=0 |
---|
| 1894 | init_exec=n |
---|
| 1895 | |
---|
| 1896 | # Test : if oasis is there, we put it at the first position |
---|
[623] | 1897 | |
---|
[621] | 1898 | for comp in ${config_ListOfComponents[*]} ; do |
---|
[623] | 1899 | |
---|
[621] | 1900 | if [ "X${comp}" = "XCPL" ] ; then |
---|
[623] | 1901 | |
---|
[621] | 1902 | eval ExeNameIn=\${config_Executable_${comp}[0]} |
---|
| 1903 | eval ExeNameOut=\${config_Executable_${comp}[1]} |
---|
[623] | 1904 | |
---|
[621] | 1905 | echo "#!/bin/ksh" > script_${ExeNameOut}.ksh |
---|
| 1906 | echo "" >> script_${ExeNameOut}.ksh |
---|
| 1907 | echo "export KMP_STACKSIZE=3g" >> script_${ExeNameOut}.ksh |
---|
| 1908 | echo "export KMP_LIBRARY=turnaround" >> script_${ExeNameOut}.ksh |
---|
| 1909 | echo "export MKL_SERIAL=YES" >> script_${ExeNameOut}.ksh |
---|
| 1910 | echo "./${ExeNameOut} > out_${ExeNameOut}.out 2>out_${ExeNameOut}.err" >> script_${ExeNameOut}.ksh |
---|
| 1911 | IGCM_sys_Chmod u+x script_${ExeNameOut}.ksh |
---|
[623] | 1912 | |
---|
[621] | 1913 | init_node=n |
---|
[623] | 1914 | |
---|
[621] | 1915 | (( nombre_restant_node = NUM_COREPERNODE - 1 )) |
---|
| 1916 | node_num_current=0 |
---|
| 1917 | node_current=${host[${node_num_current}]} |
---|
[623] | 1918 | |
---|
| 1919 | EXECUTION="${EXECUTION} -H ${node_current} -np 1 ./script_${ExeNameOut}.ksh" |
---|
| 1920 | |
---|
[621] | 1921 | init_exec=y |
---|
| 1922 | start_num=1 |
---|
[623] | 1923 | |
---|
[621] | 1924 | fi |
---|
[623] | 1925 | |
---|
[621] | 1926 | done |
---|
[623] | 1927 | |
---|
[621] | 1928 | # Then loop on the components (except for oasis) |
---|
| 1929 | |
---|
| 1930 | for comp in ${config_ListOfComponents[*]} ; do |
---|
[623] | 1931 | |
---|
[621] | 1932 | eval ExeNameIn=\${config_Executable_${comp}[0]} |
---|
| 1933 | eval ExeNameOut=\${config_Executable_${comp}[1]} |
---|
[623] | 1934 | |
---|
[621] | 1935 | # Only if we really have an executable for the component : |
---|
| 1936 | if ( [ "X${ExeNameOut}" != X\"\" ] && [ "X${comp}" != "XCPL" ] ) ; then |
---|
| 1937 | |
---|
| 1938 | eval comp_proc_mpi_loc=\${${comp}_PROC_MPI} |
---|
| 1939 | eval comp_proc_omp_loc=\${${comp}_PROC_OMP} |
---|
[623] | 1940 | |
---|
[621] | 1941 | echo "#!/bin/ksh" > script_${ExeNameOut}.ksh |
---|
| 1942 | # echo "set -vx" >> script_${ExeNameOut}.ksh |
---|
| 1943 | echo "" >> script_${ExeNameOut}.ksh |
---|
| 1944 | echo "export KMP_STACKSIZE=3g" >> script_${ExeNameOut}.ksh |
---|
| 1945 | echo "export KMP_LIBRARY=turnaround" >> script_${ExeNameOut}.ksh |
---|
| 1946 | echo "export MKL_SERIAL=YES" >> script_${ExeNameOut}.ksh |
---|
[686] | 1947 | echo "export OMP_NUM_THREADS=${comp_proc_omp_loc}" >> script_${ExeNameOut}.ksh |
---|
[621] | 1948 | echo "(( MYMPIRANK = OMPI_COMM_WORLD_RANK - ${start_num})) " >> script_${ExeNameOut}.ksh |
---|
| 1949 | echo "./${ExeNameOut} > out_${ExeNameOut}.out.\${MYMPIRANK} 2>out_${ExeNameOut}.err.\${MYMPIRANK}" >> script_${ExeNameOut}.ksh |
---|
| 1950 | IGCM_sys_Chmod u+x script_${ExeNameOut}.ksh |
---|
[623] | 1951 | |
---|
[621] | 1952 | node_num=0 |
---|
| 1953 | |
---|
[623] | 1954 | # We define the number of MPI process to be assigned for the component |
---|
| 1955 | |
---|
[621] | 1956 | nombre_restant_comp=${comp_proc_mpi_loc} |
---|
[623] | 1957 | |
---|
[621] | 1958 | # Loop on the allocated nodes |
---|
| 1959 | |
---|
| 1960 | for node in ${listnodes} ; do |
---|
| 1961 | |
---|
| 1962 | # We go to the current node |
---|
| 1963 | if [ ${node_num} = ${node_num_current} ] ; then |
---|
| 1964 | |
---|
[623] | 1965 | node_current=${host[${node_num_current}]} |
---|
[621] | 1966 | |
---|
[623] | 1967 | # If first time on the node : initialisation |
---|
[621] | 1968 | |
---|
| 1969 | if [ ${init_node} = y ] ; then |
---|
| 1970 | nombre_restant_node=${NUM_COREPERNODE} |
---|
[623] | 1971 | fi |
---|
| 1972 | |
---|
[621] | 1973 | # Test on the number of OMP threads |
---|
| 1974 | |
---|
[623] | 1975 | if [ ${comp_proc_omp_loc} -gt ${nombre_restant_node} ] ; then |
---|
[621] | 1976 | (( node_num = node_num + 1 )) |
---|
| 1977 | node_num_current=${node_num} |
---|
| 1978 | init_node=y |
---|
| 1979 | continue |
---|
| 1980 | fi |
---|
| 1981 | |
---|
| 1982 | # Number of MPI process to assign |
---|
| 1983 | |
---|
| 1984 | (( num_corempi = nombre_restant_node / comp_proc_omp_loc )) |
---|
[623] | 1985 | |
---|
| 1986 | if [ ${num_corempi} -gt ${nombre_restant_comp} ] ; then |
---|
[621] | 1987 | num_corempi=${nombre_restant_comp} |
---|
| 1988 | fi |
---|
| 1989 | |
---|
| 1990 | (( nombre_restant_node = nombre_restant_node - num_corempi * comp_proc_omp_loc )) |
---|
[623] | 1991 | (( nombre_restant_comp = nombre_restant_comp - num_corempi )) |
---|
| 1992 | |
---|
| 1993 | if [ ${init_exec} = y ] ; then |
---|
[621] | 1994 | EXECUTION="${EXECUTION} : -H ${node_current} -np ${num_corempi} ./script_${ExeNameOut}.ksh" |
---|
[623] | 1995 | else |
---|
[621] | 1996 | EXECUTION="${EXECUTION} -H ${node_current} -np ${num_corempi} ./script_${ExeNameOut}.ksh" |
---|
| 1997 | init_exec=y |
---|
| 1998 | fi |
---|
| 1999 | |
---|
| 2000 | (( start_num = num_corempi + start_num )) |
---|
[623] | 2001 | |
---|
[621] | 2002 | else |
---|
[623] | 2003 | |
---|
| 2004 | (( node_num = node_num + 1 )) |
---|
| 2005 | continue |
---|
[621] | 2006 | fi |
---|
[623] | 2007 | |
---|
| 2008 | # Test on the number of core/process remaining on the node/component |
---|
| 2009 | |
---|
[621] | 2010 | if [ ${nombre_restant_node} = 0 ] ; then |
---|
| 2011 | (( node_num = node_num + 1 )) |
---|
[623] | 2012 | node_num_current=${node_num} |
---|
| 2013 | init_node=y |
---|
[621] | 2014 | |
---|
| 2015 | if [ ${nombre_restant_comp} = 0 ] ; then |
---|
| 2016 | break 1 |
---|
| 2017 | fi |
---|
| 2018 | else |
---|
| 2019 | |
---|
| 2020 | node_num_current=${node_num} |
---|
[623] | 2021 | init_node=n |
---|
| 2022 | |
---|
| 2023 | if [ ${nombre_restant_comp} = 0 ] ; then |
---|
| 2024 | break 1 |
---|
| 2025 | fi |
---|
[621] | 2026 | fi |
---|
| 2027 | done |
---|
| 2028 | fi |
---|
| 2029 | done |
---|
[623] | 2030 | |
---|
[621] | 2031 | else |
---|
| 2032 | |
---|
| 2033 | # Then first loop on the components for the coupler ie oasis |
---|
| 2034 | |
---|
| 2035 | ## the coupler ie oasis must be the first one |
---|
[623] | 2036 | for comp in ${config_ListOfComponents[*]} ; do |
---|
[621] | 2037 | |
---|
[623] | 2038 | eval ExeNameOut=\${config_Executable_${comp}[1]} |
---|
| 2039 | |
---|
| 2040 | # for CPL component only |
---|
| 2041 | if [ "X${comp}" = "XCPL" ] ; then |
---|
| 2042 | eval comp_proc_mpi_loc=\${${comp}_PROC_MPI} |
---|
| 2043 | echo "-np ${comp_proc_mpi_loc} ./${ExeNameOut} " >> run_file |
---|
| 2044 | fi |
---|
| 2045 | done |
---|
| 2046 | |
---|
[621] | 2047 | # Then second loop on the components |
---|
| 2048 | |
---|
[623] | 2049 | for comp in ${config_ListOfComponents[*]} ; do |
---|
| 2050 | |
---|
| 2051 | eval ExeNameOut=\${config_Executable_${comp}[1]} |
---|
| 2052 | |
---|
[621] | 2053 | # Only if we really have an executable for the component and not the coupler ie oasis: |
---|
[623] | 2054 | if ( [ "X${ExeNameOut}" != X\"\" ] && [ "X${comp}" != "XCPL" ] ) ; then |
---|
| 2055 | eval comp_proc_mpi_loc=\${${comp}_PROC_MPI} |
---|
[629] | 2056 | echo "-np ${comp_proc_mpi_loc} ./${ExeNameOut}" >> run_file |
---|
[623] | 2057 | fi |
---|
| 2058 | done |
---|
| 2059 | IGCM_sys_Chmod u+x run_file |
---|
[621] | 2060 | |
---|
[623] | 2061 | EXECUTION="${HOST_MPIRUN_COMMAND} --app ./run_file" |
---|
| 2062 | |
---|
[621] | 2063 | fi |
---|
| 2064 | |
---|
[690] | 2065 | else # Only one executable. |
---|
| 2066 | # Check has to be added with : |
---|
[687] | 2067 | # Job : |
---|
| 2068 | # #MSUB -n 8 # reservation des processeurs pour le job |
---|
| 2069 | # #MSUB -N 4 # reservation des nodes pour le job |
---|
| 2070 | # BATCH_NUM_PROC_TOT=32 |
---|
| 2071 | # |
---|
| 2072 | # config.card : |
---|
| 2073 | # ATM= (gcm.e, lmdz.x, 8MPI, 4OMP) |
---|
[690] | 2074 | # |
---|
| 2075 | # tested with : |
---|
| 2076 | # Job : |
---|
| 2077 | # #MSUB -n 32 |
---|
| 2078 | # BATCH_NUM_PROC_TOT=32 |
---|
| 2079 | # |
---|
| 2080 | # config.card : |
---|
| 2081 | # ATM= (gcm.e, lmdz.x) |
---|
[621] | 2082 | |
---|
[690] | 2083 | |
---|
[621] | 2084 | for comp in ${config_ListOfComponents[*]} ; do |
---|
| 2085 | |
---|
| 2086 | # Only if we really have an executable for the component : |
---|
[623] | 2087 | eval ExeNameOut=\${config_Executable_${comp}[1]} |
---|
[664] | 2088 | ### if ( [ "X${ExeNameOut}" != X\"\" ] ) ; then |
---|
[662] | 2089 | if ( [ "X${ExeNameOut}" != X\"\" ] && [ "X${ExeNameOut}" != "Xinca.dat" ] ) ; then |
---|
[623] | 2090 | |
---|
[687] | 2091 | IGCM_OMP=1 |
---|
| 2092 | |
---|
[623] | 2093 | if ( ${OK_PARA_OMP} ) ; then |
---|
| 2094 | eval comp_proc_omp_loc=\${${comp}_PROC_OMP} |
---|
[686] | 2095 | export OMP_NUM_THREADS=${comp_proc_omp_loc} |
---|
[687] | 2096 | IGCMG_OMP=${comp_proc_omp_loc} |
---|
[623] | 2097 | fi |
---|
| 2098 | if ( ${OK_PARA_MPI} ) ; then |
---|
[686] | 2099 | eval comp_proc_mpi_loc=\${${comp}_PROC_MPI} |
---|
[621] | 2100 | # Default : mpirun used if nb_proc gt 1 |
---|
[686] | 2101 | # pour sortie out/err par process ? more test required |
---|
[623] | 2102 | # echo "./${ExeNameOut} > out_${ExeNameOut}.out.\${OMPI_COMM_WORLD_RANK} 2>out_${ExeNameOut}.err.\${OMPI_COMM_WORLD_RANK}" >> script_${ExeNameOut}.ksh |
---|
[686] | 2103 | EXECUTION="${HOST_MPIRUN_COMMAND} -np ${comp_proc_mpi_loc} ./${ExeNameOut}" |
---|
[623] | 2104 | else |
---|
[687] | 2105 | # Check if BATCH_NUM_PROC_TOT = IGCMG_OMP |
---|
| 2106 | if ( [ ${IGCM_OMP} -ne ${BATCH_NUM_PROC_TOT} ] ) ; then |
---|
| 2107 | IGCM_debug_Print 1 "sys Titane : BATCH_NUM_PROC_TOT <> ${comp}_PROC_OMP : ${BATCH_NUM_PROC_TOT} <> ${BRIDGE_MSUB_NPROC} " |
---|
| 2108 | IGCM_debug_Print 1 "sys Titane : Check #MSUB -n xx into Job" |
---|
| 2109 | IGCM_debug_Exit "IGCM_sys_build_execution_scripts" |
---|
| 2110 | fi |
---|
[623] | 2111 | # Default : mpirun is NOT used if nb_proc eq 1 |
---|
[686] | 2112 | # pour sortie out/err par process ? more test required |
---|
[623] | 2113 | # echo "./${ExeNameOut} > out_${ExeNameOut}.out 2>out_${ExeNameOut}.err" >> script_${ExeNameOut}.ksh |
---|
[687] | 2114 | EXECUTION="/usr/bin/time ./${ExeNameOut}" |
---|
[623] | 2115 | fi |
---|
| 2116 | fi |
---|
[621] | 2117 | done |
---|
[623] | 2118 | |
---|
[544] | 2119 | fi |
---|
[621] | 2120 | |
---|
| 2121 | IGCM_debug_Print 1 "sys Titane : La commande d execution est " |
---|
[686] | 2122 | IGCM_debug_Print 1 "$EXECUTION" |
---|
[621] | 2123 | |
---|
| 2124 | IGCM_debug_PopStack "IGCM_sys_build_execution_scripts" |
---|
[222] | 2125 | } |
---|
[451] | 2126 | |
---|
[651] | 2127 | ############################################################ |
---|
| 2128 | # Check of space available on temporary filesytems |
---|
| 2129 | function IGCM_sys_check_quota { |
---|
| 2130 | IGCM_debug_PushStack "IGCM_sys_check_quota" |
---|
| 2131 | if ( $DEBUG_sys ) ; then |
---|
| 2132 | echo "IGCM_sys_check_quota " |
---|
| 2133 | fi |
---|
| 2134 | # Limit of quota (in %) |
---|
| 2135 | limit_quota=90 |
---|
| 2136 | |
---|
| 2137 | # Check of the volume |
---|
| 2138 | volume_quota=$(ccc_quota | grep ' scratch' | awk '{print $2}') |
---|
| 2139 | volume_avail=$(ccc_quota | grep ' scratch' | awk '{print $3}') |
---|
| 2140 | |
---|
| 2141 | if ( [ ! X${volume_quota} = X ] && [ ! ${volume_quota} = "-" ] ) ; then |
---|
| 2142 | |
---|
| 2143 | unit_avail=${volume_avail: -1} |
---|
| 2144 | unit_quota=${volume_quota: -1} |
---|
| 2145 | |
---|
[696] | 2146 | if [ "${unit_quota}" = "*" ] ; then |
---|
| 2147 | IGCM_debug_Print 1 "Please, check your quota of volume on scratch" |
---|
| 2148 | IGCM_debug_Print 1 "More than 100% of your quota is used" |
---|
| 2149 | IGCM_debug_Print 1 "Use the ccc_quota command to check" |
---|
| 2150 | IGCM_debug_Print 1 "You must have more than 10% available to run" |
---|
| 2151 | IGCM_debug_Exit "Not enough space to run ! STOP HERE" |
---|
| 2152 | IGCM_debug_Verif_Exit |
---|
| 2153 | fi |
---|
| 2154 | |
---|
[651] | 2155 | temp_avail=${volume_avail%%${volume_avail: -1}*} |
---|
| 2156 | temp_quota=${volume_quota%%${volume_quota: -1}*} |
---|
| 2157 | |
---|
| 2158 | if [ ! ${unit_avail} = ${unit_quota} ] ; then |
---|
| 2159 | |
---|
| 2160 | # Convertion |
---|
| 2161 | if [ ${volume_avail: -1} = "T" ] ; then |
---|
| 2162 | (( temp_avail = temp_avail * 1000000000000 )) |
---|
| 2163 | elif [ ${volume_avail: -1} = "G" ] ; then |
---|
| 2164 | (( temp_avail = temp_avail * 1000000000 )) |
---|
| 2165 | elif [ ${volume_avail: -1} = "M" ] ; then |
---|
| 2166 | (( temp_avail = temp_avail * 1000000 )) |
---|
| 2167 | elif [ ${volume_avail: -1} = "k" ] ; then |
---|
| 2168 | (( temp_avail = temp_avail * 1000 )) |
---|
| 2169 | else |
---|
| 2170 | (( temp_avail = volume_avail )) |
---|
| 2171 | fi |
---|
| 2172 | if [ ${volume_quota: -1} = "T" ] ; then |
---|
| 2173 | (( temp_quota = temp_quota * 1000000000000 )) |
---|
| 2174 | elif [ ${volume_quota: -1} = "G" ] ; then |
---|
| 2175 | (( temp_quota = temp_quota * 1000000000 )) |
---|
| 2176 | elif [ ${volume_quota: -1} = "M" ] ; then |
---|
| 2177 | (( temp_quota = temp_quota * 1000000 )) |
---|
| 2178 | elif [ ${volume_quota: -1} = "k" ] ; then |
---|
| 2179 | (( temp_quota = temp_quota * 1000 )) |
---|
| 2180 | else |
---|
| 2181 | (( temp_quota = volume_quota )) |
---|
| 2182 | fi |
---|
| 2183 | fi |
---|
| 2184 | |
---|
| 2185 | quota_volume=$(echo "scale=2 ; $temp_quota/$temp_avail*100" | bc) |
---|
| 2186 | # echo "volume ratio is " $quota_volume |
---|
| 2187 | |
---|
| 2188 | if [ ${quota_volume} -ge ${limit_quota} ] ; then |
---|
| 2189 | IGCM_debug_Print 1 "Please, check your quota of volume on scratch" |
---|
[654] | 2190 | IGCM_debug_Print 1 "${quota_volume}% of your quota is used" |
---|
| 2191 | IGCM_debug_Print 1 "Use the ccc_quota command to check" |
---|
[651] | 2192 | IGCM_debug_Print 1 "You must have more than 10% available to run" |
---|
| 2193 | IGCM_debug_Exit "Not enough space to run ! STOP HERE" |
---|
| 2194 | IGCM_debug_Verif_Exit |
---|
| 2195 | fi |
---|
| 2196 | |
---|
| 2197 | fi |
---|
| 2198 | |
---|
| 2199 | # Check of the number of inodes |
---|
| 2200 | |
---|
| 2201 | inode_quota=$(ccc_quota | grep ' scratch' | awk '{print $6}') |
---|
| 2202 | inode_avail=$(ccc_quota | grep ' scratch' | awk '{print $7}') |
---|
| 2203 | |
---|
| 2204 | if ( [ ! X${inode_quota} = X ] && [ ! ${inode_quota} = "-" ] ) ; then |
---|
| 2205 | |
---|
| 2206 | unit_avail=${inode_avail: -1} |
---|
| 2207 | unit_quota=${inode_quota: -1} |
---|
| 2208 | |
---|
[696] | 2209 | if [ "${unit_quota}" = "*" ] ; then |
---|
| 2210 | IGCM_debug_Print 1 "Please, check your quota of inode on scratch" |
---|
| 2211 | IGCM_debug_Print 1 "More than 100% of your quota is used" |
---|
| 2212 | IGCM_debug_Print 1 "Use the ccc_quota command to check" |
---|
| 2213 | IGCM_debug_Print 1 "You must have more than 10% available to run" |
---|
| 2214 | IGCM_debug_Exit "Not enough space to run ! STOP HERE" |
---|
| 2215 | IGCM_debug_Verif_Exit |
---|
| 2216 | fi |
---|
| 2217 | |
---|
[651] | 2218 | temp_avail=${inode_avail%%${inode_avail: -1}*} |
---|
| 2219 | temp_quota=${inode_quota%%${inode_quota: -1}*} |
---|
| 2220 | |
---|
| 2221 | if [ ! ${unit_avail} = ${unit_quota} ] ; then |
---|
| 2222 | |
---|
| 2223 | # Convertion |
---|
| 2224 | if [ ${inode_avail: -1} = "T" ] ; then |
---|
| 2225 | (( temp_avail = temp_avail * 1000000000000 )) |
---|
| 2226 | elif [ ${inode_avail: -1} = "G" ] ; then |
---|
| 2227 | (( temp_avail = temp_avail * 1000000000 )) |
---|
| 2228 | elif [ ${inode_avail: -1} = "M" ] ; then |
---|
| 2229 | (( temp_avail = temp_avail * 1000000 )) |
---|
| 2230 | elif [ ${inode_avail: -1} = "k" ] ; then |
---|
| 2231 | (( temp_avail = temp_avail * 1000 )) |
---|
| 2232 | else |
---|
| 2233 | (( temp_avail = inode_avail )) |
---|
| 2234 | fi |
---|
| 2235 | |
---|
| 2236 | if [ ${inode_quota: -1} = "T" ] ; then |
---|
| 2237 | (( temp_quota = temp_quota * 1000000000000 )) |
---|
| 2238 | elif [ ${inode_quota: -1} = "G" ] ; then |
---|
| 2239 | (( temp_quota = temp_quota * 1000000000 )) |
---|
| 2240 | elif [ ${inode_quota: -1} = "M" ] ; then |
---|
| 2241 | (( temp_quota = temp_quota * 1000000 )) |
---|
| 2242 | elif [ ${inode_quota: -1} = "k" ] ; then |
---|
| 2243 | (( temp_quota = temp_quota * 1000 )) |
---|
| 2244 | else |
---|
| 2245 | (( temp_quota = inode_quota )) |
---|
| 2246 | fi |
---|
| 2247 | fi |
---|
| 2248 | quota_inode=$(echo "scale=2 ; $temp_quota/$temp_avail*100" | bc) |
---|
| 2249 | # echo "inode ratio is " $quota_inode |
---|
| 2250 | |
---|
| 2251 | if [ ${quota_inode} -ge ${limit_quota} ] ; then |
---|
| 2252 | IGCM_debug_Print 1 "Please, check your quota of inode on scratch" |
---|
[654] | 2253 | IGCM_debug_Print 1 "${quota_inode}% of your quota is used" |
---|
| 2254 | IGCM_debug_Print 1 "Use the ccc_quota command to check" |
---|
[651] | 2255 | IGCM_debug_Print 1 "You must have more than 10% available to run" |
---|
| 2256 | IGCM_debug_Exit "Not enough space to run ! STOP HERE" |
---|
| 2257 | IGCM_debug_Verif_Exit |
---|
| 2258 | fi |
---|
| 2259 | |
---|
| 2260 | fi |
---|
| 2261 | IGCM_debug_PopStack "IGCM_sys_check_quota" |
---|
| 2262 | } |
---|
| 2263 | |
---|
[451] | 2264 | ############################################################## |
---|
| 2265 | # NCO OPERATOR |
---|
| 2266 | |
---|
[544] | 2267 | function IGCM_sys_ncap2 { |
---|
| 2268 | IGCM_debug_PushStack "IGCM_sys_ncap2" -- $@ |
---|
| 2269 | if ( $DEBUG_sys ) ; then |
---|
| 2270 | echo "IGCM_sys_ncap2 :" $@ |
---|
| 2271 | fi |
---|
[714] | 2272 | |
---|
| 2273 | typeset NB_ESSAI DELAI status i |
---|
| 2274 | # number of tentative |
---|
| 2275 | NB_ESSAI=3 |
---|
| 2276 | # time delay between tentative |
---|
| 2277 | DELAI=2 |
---|
| 2278 | |
---|
| 2279 | i=0 |
---|
| 2280 | while [ $i -lt $NB_ESSAI ] ; do |
---|
| 2281 | ncap2 "$@" > out_rsync 2>&1 |
---|
| 2282 | status=$? |
---|
| 2283 | if [ ${status} -gt 0 ] ; then |
---|
| 2284 | IGCM_debug_Print 2 "IGCM_sys_ncap2 : error code ${status}" |
---|
| 2285 | cat out_rsync |
---|
| 2286 | \rm out_rsync |
---|
| 2287 | IGCM_debug_Print 2 "IGCM_sys_ncap2 : ${i}/${NB_ESSAI} sleep ${DELAI} seconds and try again." |
---|
| 2288 | else |
---|
| 2289 | \rm out_rsync |
---|
| 2290 | break |
---|
| 2291 | fi |
---|
| 2292 | (( i = i + 1 )) |
---|
| 2293 | done |
---|
| 2294 | |
---|
| 2295 | if [ ${status} -gt 0 ] ; then |
---|
| 2296 | echo "IGCM_sys_ncap2 : ncap2 error" |
---|
| 2297 | IGCM_debug_Exit "ncap2" |
---|
[544] | 2298 | fi |
---|
| 2299 | |
---|
| 2300 | IGCM_debug_PopStack "IGCM_sys_ncap2" |
---|
| 2301 | } |
---|
| 2302 | |
---|
[451] | 2303 | function IGCM_sys_ncatted { |
---|
[544] | 2304 | IGCM_debug_PushStack "IGCM_sys_ncatted" -- $@ |
---|
| 2305 | if ( $DEBUG_sys ) ; then |
---|
| 2306 | echo "IGCM_sys_ncatted :" $@ |
---|
| 2307 | fi |
---|
[714] | 2308 | |
---|
| 2309 | typeset NB_ESSAI DELAI status i |
---|
| 2310 | # number of tentative |
---|
| 2311 | NB_ESSAI=3 |
---|
| 2312 | # time delay between tentative |
---|
| 2313 | DELAI=2 |
---|
| 2314 | |
---|
| 2315 | i=0 |
---|
| 2316 | while [ $i -lt $NB_ESSAI ] ; do |
---|
| 2317 | ncatted "$@" > out_rsync 2>&1 |
---|
| 2318 | status=$? |
---|
| 2319 | if [ ${status} -gt 0 ] ; then |
---|
| 2320 | IGCM_debug_Print 2 "IGCM_sys_ncatted : error code ${status}" |
---|
| 2321 | cat out_rsync |
---|
| 2322 | \rm out_rsync |
---|
| 2323 | IGCM_debug_Print 2 "IGCM_sys_ncatted : ${i}/${NB_ESSAI} sleep ${DELAI} seconds and try again." |
---|
| 2324 | else |
---|
| 2325 | \rm out_rsync |
---|
| 2326 | break |
---|
| 2327 | fi |
---|
| 2328 | (( i = i + 1 )) |
---|
| 2329 | done |
---|
| 2330 | |
---|
| 2331 | if [ ${status} -gt 0 ] ; then |
---|
| 2332 | echo "IGCM_sys_ncatted : ncatted error" |
---|
| 2333 | IGCM_debug_Exit "ncatted" |
---|
[544] | 2334 | fi |
---|
[451] | 2335 | |
---|
[544] | 2336 | IGCM_debug_PopStack "IGCM_sys_ncatted" |
---|
[451] | 2337 | } |
---|
| 2338 | |
---|
| 2339 | function IGCM_sys_ncbo { |
---|
[544] | 2340 | IGCM_debug_PushStack "IGCM_sys_ncbo" -- $@ |
---|
| 2341 | if ( $DEBUG_sys ) ; then |
---|
| 2342 | echo "IGCM_sys_ncbo :" $@ |
---|
| 2343 | fi |
---|
[714] | 2344 | |
---|
| 2345 | typeset NB_ESSAI DELAI status i |
---|
| 2346 | # number of tentative |
---|
| 2347 | NB_ESSAI=3 |
---|
| 2348 | # time delay between tentative |
---|
| 2349 | DELAI=2 |
---|
| 2350 | |
---|
| 2351 | i=0 |
---|
| 2352 | while [ $i -lt $NB_ESSAI ] ; do |
---|
| 2353 | ncbo $@ > out_rsync 2>&1 |
---|
| 2354 | status=$? |
---|
| 2355 | if [ ${status} -gt 0 ] ; then |
---|
| 2356 | IGCM_debug_Print 2 "IGCM_sys_ncbo : error code ${status}" |
---|
| 2357 | cat out_rsync |
---|
| 2358 | \rm out_rsync |
---|
| 2359 | IGCM_debug_Print 2 "IGCM_sys_ncbo : ${i}/${NB_ESSAI} sleep ${DELAI} seconds and try again." |
---|
| 2360 | else |
---|
| 2361 | \rm out_rsync |
---|
| 2362 | break |
---|
| 2363 | fi |
---|
| 2364 | (( i = i + 1 )) |
---|
| 2365 | done |
---|
| 2366 | |
---|
| 2367 | if [ ${status} -gt 0 ] ; then |
---|
| 2368 | echo "IGCM_sys_ncbo : ncbo error" |
---|
| 2369 | IGCM_debug_Exit "ncbo" |
---|
[544] | 2370 | fi |
---|
[451] | 2371 | |
---|
[544] | 2372 | IGCM_debug_PopStack "IGCM_sys_ncbo" |
---|
[451] | 2373 | } |
---|
| 2374 | |
---|
| 2375 | function IGCM_sys_ncdiff { |
---|
[544] | 2376 | IGCM_debug_PushStack "IGCM_sys_ncdiff" -- $@ |
---|
| 2377 | if ( $DEBUG_sys ) ; then |
---|
| 2378 | echo "IGCM_sys_ncdiff :" $@ |
---|
| 2379 | fi |
---|
[714] | 2380 | |
---|
| 2381 | typeset NB_ESSAI DELAI status i |
---|
| 2382 | # number of tentative |
---|
| 2383 | NB_ESSAI=3 |
---|
| 2384 | # time delay between tentative |
---|
| 2385 | DELAI=2 |
---|
| 2386 | |
---|
| 2387 | i=0 |
---|
| 2388 | while [ $i -lt $NB_ESSAI ] ; do |
---|
| 2389 | ncdiff $@ > out_rsync 2>&1 |
---|
| 2390 | status=$? |
---|
| 2391 | if [ ${status} -gt 0 ] ; then |
---|
| 2392 | IGCM_debug_Print 2 "IGCM_sys_ncdiff : error code ${status}" |
---|
| 2393 | cat out_rsync |
---|
| 2394 | \rm out_rsync |
---|
| 2395 | IGCM_debug_Print 2 "IGCM_sys_ncdiff : ${i}/${NB_ESSAI} sleep ${DELAI} seconds and try again." |
---|
| 2396 | else |
---|
| 2397 | \rm out_rsync |
---|
| 2398 | break |
---|
| 2399 | fi |
---|
| 2400 | (( i = i + 1 )) |
---|
| 2401 | done |
---|
| 2402 | |
---|
| 2403 | if [ ${status} -gt 0 ] ; then |
---|
| 2404 | echo "IGCM_sys_ncdiff : ncdiff error" |
---|
| 2405 | IGCM_debug_Exit "ncdiff" |
---|
[544] | 2406 | fi |
---|
[451] | 2407 | |
---|
[544] | 2408 | IGCM_debug_PopStack "IGCM_sys_ncdiff" |
---|
[451] | 2409 | } |
---|
| 2410 | |
---|
| 2411 | function IGCM_sys_ncea { |
---|
[544] | 2412 | IGCM_debug_PushStack "IGCM_sys_ncea" -- $@ |
---|
| 2413 | if ( $DEBUG_sys ) ; then |
---|
| 2414 | echo "IGCM_sys_ncea :" $@ |
---|
| 2415 | fi |
---|
[714] | 2416 | |
---|
| 2417 | typeset NB_ESSAI DELAI status i |
---|
| 2418 | # number of tentative |
---|
| 2419 | NB_ESSAI=3 |
---|
| 2420 | # time delay between tentative |
---|
| 2421 | DELAI=2 |
---|
| 2422 | |
---|
| 2423 | i=0 |
---|
| 2424 | while [ $i -lt $NB_ESSAI ] ; do |
---|
| 2425 | ncea $@ > out_rsync 2>&1 |
---|
| 2426 | status=$? |
---|
| 2427 | if [ ${status} -gt 0 ] ; then |
---|
| 2428 | IGCM_debug_Print 2 "IGCM_sys_ncea : error code ${status}" |
---|
| 2429 | cat out_rsync |
---|
| 2430 | \rm out_rsync |
---|
| 2431 | IGCM_debug_Print 2 "IGCM_sys_ncea : ${i}/${NB_ESSAI} sleep ${DELAI} seconds and try again." |
---|
| 2432 | else |
---|
| 2433 | \rm out_rsync |
---|
| 2434 | break |
---|
| 2435 | fi |
---|
| 2436 | (( i = i + 1 )) |
---|
| 2437 | done |
---|
| 2438 | |
---|
| 2439 | if [ ${status} -gt 0 ] ; then |
---|
| 2440 | echo "IGCM_sys_ncea : ncea error" |
---|
| 2441 | IGCM_debug_Exit "ncea" |
---|
[544] | 2442 | fi |
---|
[451] | 2443 | |
---|
[544] | 2444 | IGCM_debug_PopStack "IGCM_sys_ncea" |
---|
[451] | 2445 | } |
---|
| 2446 | |
---|
| 2447 | function IGCM_sys_ncecat { |
---|
[544] | 2448 | IGCM_debug_PushStack "IGCM_sys_ncecat" -- $@ |
---|
| 2449 | if ( $DEBUG_sys ) ; then |
---|
| 2450 | echo "IGCM_sys_ncecat :" $@ |
---|
| 2451 | fi |
---|
[714] | 2452 | |
---|
| 2453 | typeset NB_ESSAI DELAI status i |
---|
| 2454 | # number of tentative |
---|
| 2455 | NB_ESSAI=3 |
---|
| 2456 | # time delay between tentative |
---|
| 2457 | DELAI=2 |
---|
| 2458 | |
---|
| 2459 | i=0 |
---|
| 2460 | while [ $i -lt $NB_ESSAI ] ; do |
---|
| 2461 | ncecat $@ > out_rsync 2>&1 |
---|
| 2462 | status=$? |
---|
| 2463 | if [ ${status} -gt 0 ] ; then |
---|
| 2464 | IGCM_debug_Print 2 "IGCM_sys_ncecat : error code ${status}" |
---|
| 2465 | cat out_rsync |
---|
| 2466 | \rm out_rsync |
---|
| 2467 | IGCM_debug_Print 2 "IGCM_sys_ncecat : ${i}/${NB_ESSAI} sleep ${DELAI} seconds and try again." |
---|
| 2468 | else |
---|
| 2469 | \rm out_rsync |
---|
| 2470 | break |
---|
| 2471 | fi |
---|
| 2472 | (( i = i + 1 )) |
---|
| 2473 | done |
---|
| 2474 | |
---|
| 2475 | if [ ${status} -gt 0 ] ; then |
---|
| 2476 | echo "IGCM_sys_ncecat : ncecat error" |
---|
| 2477 | IGCM_debug_Exit "ncecat" |
---|
[544] | 2478 | fi |
---|
[451] | 2479 | |
---|
[544] | 2480 | IGCM_debug_PopStack "IGCM_sys_ncecat" |
---|
[451] | 2481 | } |
---|
| 2482 | |
---|
| 2483 | function IGCM_sys_ncflint { |
---|
[544] | 2484 | IGCM_debug_PushStack "IGCM_sys_ncflint" -- $@ |
---|
| 2485 | if ( $DEBUG_sys ) ; then |
---|
| 2486 | echo "IGCM_sys_ncflint :" $@ |
---|
| 2487 | fi |
---|
[714] | 2488 | |
---|
| 2489 | typeset NB_ESSAI DELAI status i |
---|
| 2490 | # number of tentative |
---|
| 2491 | NB_ESSAI=3 |
---|
| 2492 | # time delay between tentative |
---|
| 2493 | DELAI=2 |
---|
| 2494 | |
---|
| 2495 | i=0 |
---|
| 2496 | while [ $i -lt $NB_ESSAI ] ; do |
---|
| 2497 | ncflint $@ > out_rsync 2>&1 |
---|
| 2498 | status=$? |
---|
| 2499 | if [ ${status} -gt 0 ] ; then |
---|
| 2500 | IGCM_debug_Print 2 "IGCM_sys_ncflint : error code ${status}" |
---|
| 2501 | cat out_rsync |
---|
| 2502 | \rm out_rsync |
---|
| 2503 | IGCM_debug_Print 2 "IGCM_sys_ncflint : ${i}/${NB_ESSAI} sleep ${DELAI} seconds and try again." |
---|
| 2504 | else |
---|
| 2505 | \rm out_rsync |
---|
| 2506 | break |
---|
| 2507 | fi |
---|
| 2508 | (( i = i + 1 )) |
---|
| 2509 | done |
---|
| 2510 | |
---|
| 2511 | if [ ${status} -gt 0 ] ; then |
---|
| 2512 | echo "IGCM_sys_ncflint : ncflint error" |
---|
| 2513 | IGCM_debug_Exit "ncflint" |
---|
[544] | 2514 | fi |
---|
[451] | 2515 | |
---|
[544] | 2516 | IGCM_debug_PopStack "IGCM_sys_ncflint" |
---|
[451] | 2517 | } |
---|
| 2518 | |
---|
| 2519 | function IGCM_sys_ncks { |
---|
[544] | 2520 | IGCM_debug_PushStack "IGCM_sys_ncks" -- $@ |
---|
| 2521 | if ( $DEBUG_sys ) ; then |
---|
| 2522 | echo "IGCM_sys_ncks :" $@ |
---|
| 2523 | fi |
---|
[714] | 2524 | |
---|
| 2525 | typeset NB_ESSAI DELAI status i |
---|
| 2526 | # number of tentative |
---|
| 2527 | NB_ESSAI=3 |
---|
| 2528 | # time delay between tentative |
---|
| 2529 | DELAI=2 |
---|
| 2530 | |
---|
| 2531 | i=0 |
---|
| 2532 | while [ $i -lt $NB_ESSAI ] ; do |
---|
| 2533 | ncks $@ > out_rsync 2>&1 |
---|
| 2534 | status=$? |
---|
| 2535 | if [ ${status} -gt 0 ] ; then |
---|
| 2536 | IGCM_debug_Print 2 "IGCM_sys_ncks : error code ${status}" |
---|
| 2537 | cat out_rsync |
---|
| 2538 | \rm out_rsync |
---|
| 2539 | IGCM_debug_Print 2 "IGCM_sys_ncks : ${i}/${NB_ESSAI} sleep ${DELAI} seconds and try again." |
---|
| 2540 | else |
---|
| 2541 | \rm out_rsync |
---|
| 2542 | break |
---|
| 2543 | fi |
---|
| 2544 | (( i = i + 1 )) |
---|
| 2545 | done |
---|
| 2546 | |
---|
| 2547 | if [ ${status} -gt 0 ] ; then |
---|
| 2548 | echo "IGCM_sys_ncks : ncks error" |
---|
| 2549 | IGCM_debug_Exit "ncks" |
---|
[544] | 2550 | fi |
---|
[451] | 2551 | |
---|
[544] | 2552 | IGCM_debug_PopStack "IGCM_sys_ncks" |
---|
[451] | 2553 | } |
---|
| 2554 | |
---|
| 2555 | function IGCM_sys_ncpdq { |
---|
[544] | 2556 | IGCM_debug_PushStack "IGCM_sys_ncpdq" -- $@ |
---|
| 2557 | if ( $DEBUG_sys ) ; then |
---|
| 2558 | echo "IGCM_sys_ncpdq :" $@ |
---|
| 2559 | fi |
---|
[714] | 2560 | |
---|
| 2561 | typeset NB_ESSAI DELAI status i |
---|
| 2562 | # number of tentative |
---|
| 2563 | NB_ESSAI=3 |
---|
| 2564 | # time delay between tentative |
---|
| 2565 | DELAI=2 |
---|
| 2566 | |
---|
| 2567 | i=0 |
---|
| 2568 | while [ $i -lt $NB_ESSAI ] ; do |
---|
| 2569 | ncpdq $@ > out_rsync 2>&1 |
---|
| 2570 | status=$? |
---|
| 2571 | if [ ${status} -gt 0 ] ; then |
---|
| 2572 | IGCM_debug_Print 2 "IGCM_sys_ncpdq : error code ${status}" |
---|
| 2573 | cat out_rsync |
---|
| 2574 | \rm out_rsync |
---|
| 2575 | IGCM_debug_Print 2 "IGCM_sys_ncpdq : ${i}/${NB_ESSAI} sleep ${DELAI} seconds and try again." |
---|
| 2576 | else |
---|
| 2577 | \rm out_rsync |
---|
| 2578 | break |
---|
| 2579 | fi |
---|
| 2580 | (( i = i + 1 )) |
---|
| 2581 | done |
---|
| 2582 | |
---|
| 2583 | if [ ${status} -gt 0 ] ; then |
---|
| 2584 | echo "IGCM_sys_ncpdq : ncpdq error" |
---|
| 2585 | IGCM_debug_Exit "ncpdq" |
---|
[544] | 2586 | fi |
---|
[451] | 2587 | |
---|
[544] | 2588 | IGCM_debug_PopStack "IGCM_sys_ncpdq" |
---|
[451] | 2589 | } |
---|
| 2590 | |
---|
| 2591 | function IGCM_sys_ncra { |
---|
[544] | 2592 | IGCM_debug_PushStack "IGCM_sys_ncra" -- $@ |
---|
| 2593 | if ( $DEBUG_sys ) ; then |
---|
| 2594 | echo "IGCM_sys_ncra :" $@ |
---|
| 2595 | fi |
---|
[714] | 2596 | |
---|
| 2597 | typeset NB_ESSAI DELAI status i |
---|
| 2598 | # number of tentative |
---|
| 2599 | NB_ESSAI=3 |
---|
| 2600 | # time delay between tentative |
---|
| 2601 | DELAI=2 |
---|
| 2602 | |
---|
| 2603 | i=0 |
---|
| 2604 | while [ $i -lt $NB_ESSAI ] ; do |
---|
| 2605 | ncra $@ > out_rsync 2>&1 |
---|
| 2606 | status=$? |
---|
| 2607 | if [ ${status} -gt 0 ] ; then |
---|
| 2608 | IGCM_debug_Print 2 "IGCM_sys_ncra : error code ${status}" |
---|
| 2609 | cat out_rsync |
---|
| 2610 | \rm out_rsync |
---|
| 2611 | IGCM_debug_Print 2 "IGCM_sys_ncra : ${i}/${NB_ESSAI} sleep ${DELAI} seconds and try again." |
---|
| 2612 | else |
---|
| 2613 | \rm out_rsync |
---|
| 2614 | break |
---|
| 2615 | fi |
---|
| 2616 | (( i = i + 1 )) |
---|
| 2617 | done |
---|
| 2618 | |
---|
| 2619 | if [ ${status} -gt 0 ] ; then |
---|
| 2620 | echo "IGCM_sys_ncra : ncra error" |
---|
| 2621 | IGCM_debug_Exit "ncra" |
---|
[544] | 2622 | fi |
---|
[451] | 2623 | |
---|
[544] | 2624 | IGCM_debug_PopStack "IGCM_sys_ncra" |
---|
[451] | 2625 | } |
---|
| 2626 | |
---|
| 2627 | function IGCM_sys_ncrcat { |
---|
[544] | 2628 | IGCM_debug_PushStack "IGCM_sys_ncrcat" -- $@ |
---|
| 2629 | if ( $DEBUG_sys ) ; then |
---|
| 2630 | echo "IGCM_sys_ncrcat :" $@ |
---|
| 2631 | fi |
---|
[714] | 2632 | |
---|
| 2633 | typeset NB_ESSAI DELAI status i |
---|
| 2634 | # number of tentative |
---|
| 2635 | NB_ESSAI=3 |
---|
| 2636 | # time delay between tentative |
---|
| 2637 | DELAI=2 |
---|
| 2638 | |
---|
| 2639 | i=0 |
---|
| 2640 | while [ $i -lt $NB_ESSAI ] ; do |
---|
| 2641 | ncrcat $@ > out_rsync 2>&1 |
---|
| 2642 | status=$? |
---|
| 2643 | if [ ${status} -gt 0 ] ; then |
---|
| 2644 | IGCM_debug_Print 2 "IGCM_sys_ncrcat : error code ${status}" |
---|
| 2645 | cat out_rsync |
---|
| 2646 | \rm out_rsync |
---|
| 2647 | IGCM_debug_Print 2 "IGCM_sys_ncrcat : ${i}/${NB_ESSAI} sleep ${DELAI} seconds and try again." |
---|
| 2648 | else |
---|
| 2649 | \rm out_rsync |
---|
| 2650 | break |
---|
| 2651 | fi |
---|
| 2652 | (( i = i + 1 )) |
---|
| 2653 | done |
---|
| 2654 | |
---|
| 2655 | if [ ${status} -gt 0 ] ; then |
---|
| 2656 | echo "IGCM_sys_ncrcat : ncrcat error" |
---|
| 2657 | #IGCM_debug_Exit "ncrcat" |
---|
[544] | 2658 | fi |
---|
[451] | 2659 | |
---|
[544] | 2660 | IGCM_debug_PopStack "IGCM_sys_ncrcat" |
---|
[451] | 2661 | } |
---|
| 2662 | |
---|
| 2663 | function IGCM_sys_ncrename { |
---|
[544] | 2664 | IGCM_debug_PushStack "IGCM_sys_ncrename" -- $@ |
---|
| 2665 | if ( $DEBUG_sys ) ; then |
---|
| 2666 | echo "IGCM_sys_ncrename :" $@ |
---|
| 2667 | fi |
---|
[714] | 2668 | |
---|
| 2669 | typeset NB_ESSAI DELAI status i |
---|
| 2670 | # number of tentative |
---|
| 2671 | NB_ESSAI=3 |
---|
| 2672 | # time delay between tentative |
---|
| 2673 | DELAI=2 |
---|
| 2674 | |
---|
| 2675 | i=0 |
---|
| 2676 | while [ $i -lt $NB_ESSAI ] ; do |
---|
| 2677 | ncrename $@ > out_rsync 2>&1 |
---|
| 2678 | status=$? |
---|
| 2679 | if [ ${status} -gt 0 ] ; then |
---|
| 2680 | IGCM_debug_Print 2 "IGCM_sys_ncrename : error code ${status}" |
---|
| 2681 | cat out_rsync |
---|
| 2682 | \rm out_rsync |
---|
| 2683 | IGCM_debug_Print 2 "IGCM_sys_ncrename : ${i}/${NB_ESSAI} sleep ${DELAI} seconds and try again." |
---|
| 2684 | else |
---|
| 2685 | \rm out_rsync |
---|
| 2686 | break |
---|
| 2687 | fi |
---|
| 2688 | (( i = i + 1 )) |
---|
| 2689 | done |
---|
| 2690 | |
---|
| 2691 | if [ ${status} -gt 0 ] ; then |
---|
| 2692 | echo "IGCM_sys_ncrename : ncrename error" |
---|
| 2693 | IGCM_debug_Exit "ncrename" |
---|
[544] | 2694 | fi |
---|
[451] | 2695 | |
---|
[544] | 2696 | IGCM_debug_PopStack "IGCM_sys_ncrename" |
---|
[451] | 2697 | } |
---|
| 2698 | |
---|
| 2699 | function IGCM_sys_ncwa { |
---|
[544] | 2700 | IGCM_debug_PushStack "IGCM_sys_ncwa" -- $@ |
---|
| 2701 | if ( $DEBUG_sys ) ; then |
---|
| 2702 | echo "IGCM_sys_ncwa :" $@ |
---|
| 2703 | fi |
---|
[714] | 2704 | |
---|
| 2705 | typeset NB_ESSAI DELAI status i |
---|
| 2706 | # number of tentative |
---|
| 2707 | NB_ESSAI=3 |
---|
| 2708 | # time delay between tentative |
---|
| 2709 | DELAI=2 |
---|
| 2710 | |
---|
| 2711 | i=0 |
---|
| 2712 | while [ $i -lt $NB_ESSAI ] ; do |
---|
| 2713 | ncwa $@ > out_rsync 2>&1 |
---|
| 2714 | status=$? |
---|
| 2715 | if [ ${status} -gt 0 ] ; then |
---|
| 2716 | IGCM_debug_Print 2 "IGCM_sys_ncwa : error code ${status}" |
---|
| 2717 | cat out_rsync |
---|
| 2718 | \rm out_rsync |
---|
| 2719 | IGCM_debug_Print 2 "IGCM_sys_ncwa : ${i}/${NB_ESSAI} sleep ${DELAI} seconds and try again." |
---|
| 2720 | else |
---|
| 2721 | \rm out_rsync |
---|
| 2722 | break |
---|
| 2723 | fi |
---|
| 2724 | (( i = i + 1 )) |
---|
| 2725 | done |
---|
| 2726 | |
---|
| 2727 | if [ ${status} -gt 0 ] ; then |
---|
| 2728 | echo "IGCM_sys_ncwa : ncwa error" |
---|
| 2729 | IGCM_debug_Exit "ncwa" |
---|
[544] | 2730 | fi |
---|
[451] | 2731 | |
---|
[544] | 2732 | IGCM_debug_PopStack "IGCM_sys_ncwa" |
---|
[451] | 2733 | } |
---|
[544] | 2734 | |
---|
| 2735 | ############################################################## |
---|
| 2736 | # CDO OPERATOR |
---|
| 2737 | |
---|
| 2738 | function IGCM_sys_cdo { |
---|
| 2739 | IGCM_debug_PushStack "IGCM_sys_cdo" -- $@ |
---|
| 2740 | if ( $DEBUG_sys ) ; then |
---|
| 2741 | echo "IGCM_sys_cdo :" $@ |
---|
| 2742 | fi |
---|
[714] | 2743 | |
---|
| 2744 | typeset status |
---|
| 2745 | |
---|
| 2746 | \cdo $@ > out_rsync 2>&1 |
---|
| 2747 | status=$? |
---|
| 2748 | if [ ${status} -gt 0 ] ; then |
---|
| 2749 | echo "IGCM_sys_cdo : error code ${status}" |
---|
| 2750 | cat out_rsync |
---|
| 2751 | \rm out_rsync |
---|
[544] | 2752 | IGCM_debug_PopStack "IGCM_sys_cdo" |
---|
| 2753 | return 1 |
---|
| 2754 | else |
---|
| 2755 | IGCM_debug_PopStack "IGCM_sys_cdo" |
---|
| 2756 | return 0 |
---|
| 2757 | fi |
---|
| 2758 | |
---|
| 2759 | IGCM_debug_PopStack "IGCM_sys_cdo" |
---|
| 2760 | } |
---|